Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162710 | XP_024638784.2 | 77.559 | 254 | 18 | 1 | 55 | 269 | 12 | 265 | 2.78e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162710 | sp|Q6P819|CNOT9_XENTR | 45.339 | 236 | 88 | 2 | 61 | 257 | 9 | 242 | 5.14e-60 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162710 | G7I8I6 | 77.559 | 254 | 18 | 1 | 55 | 269 | 12 | 265 | 1.33e-132 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0162710 | TR | Rcd1-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162710 | Msa1443350 | 0.963577 | 2.956451e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162710 | MtrunA17_Chr1g0177151 | 77.559 | 254 | 18 | 1 | 55 | 269 | 12 | 265 | 2.56e-136 | 385 |
| Msa0162710 | MtrunA17_Chr7g0224601 | 53.571 | 224 | 61 | 2 | 77 | 257 | 28 | 251 | 1.37e-74 | 229 |
| Msa0162710 | MtrunA17_Chr3g0099561 | 55.000 | 220 | 60 | 1 | 77 | 257 | 26 | 245 | 6.00e-74 | 228 |
| Msa0162710 | MtrunA17_Chr6g0477171 | 50.754 | 199 | 59 | 1 | 101 | 260 | 48 | 246 | 1.30e-56 | 182 |
| Msa0162710 | MtrunA17_Chr5g0444621 | 47.340 | 188 | 60 | 1 | 109 | 257 | 52 | 239 | 1.14e-52 | 172 |
| Msa0162710 | MtrunA17_Chr8g0392781 | 58.599 | 157 | 60 | 1 | 51 | 202 | 7 | 163 | 6.39e-51 | 170 |
| Msa0162710 | MtrunA17_Chr8g0392781 | 56.338 | 71 | 28 | 1 | 200 | 267 | 234 | 304 | 8.61e-20 | 87.4 |
| Msa0162710 | MtrunA17_Chr3g0083821 | 55.263 | 114 | 51 | 0 | 95 | 208 | 12 | 125 | 9.01e-37 | 127 |
| Msa0162710 | MtrunA17_Chr5g0444631 | 63.462 | 52 | 19 | 0 | 151 | 202 | 4 | 55 | 1.75e-17 | 74.7 |
| Msa0162710 | MtrunA17_Chr3g0083811 | 53.226 | 62 | 29 | 0 | 196 | 257 | 11 | 72 | 3.69e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162710 | AT3G20800.1 | 52.479 | 242 | 70 | 3 | 61 | 257 | 17 | 258 | 9.11e-74 | 228 |
| Msa0162710 | AT5G12980.1 | 52.000 | 225 | 69 | 1 | 72 | 257 | 30 | 254 | 1.68e-71 | 222 |
| Msa0162710 | AT2G32550.2 | 30.556 | 216 | 97 | 4 | 92 | 257 | 67 | 279 | 1.63e-21 | 92.4 |
| Msa0162710 | AT2G32550.3 | 30.244 | 205 | 90 | 4 | 103 | 257 | 39 | 240 | 3.81e-20 | 87.8 |
Find 47 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTCATTTGCTCTCTA+AGG | 0.219918 | 1_4:-39995528 | Msa0162710:intron |
| ATGAATGAAAACTTTGTGTT+AGG | 0.318229 | 1_4:+39993811 | None:intergenic |
| CAATACTCTTGCTCTACTTC+AGG | 0.377796 | 1_4:-39993993 | Msa0162710:intron |
| CCGTTATTGTGGACTTCAAT+TGG | 0.388452 | 1_4:-39994506 | Msa0162710:CDS |
| AGCAGTTAAGATGGTGGAGT+TGG | 0.389913 | 1_4:+39992310 | None:intergenic |
| AGAAAGGGATACAAATATAT+AGG | 0.395209 | 1_4:+39992956 | None:intergenic |
| GATTTAAGACTTGCCAGTCT+TGG | 0.402589 | 1_4:-39992902 | Msa0162710:CDS |
| CTTACTTGATGTATTAAGAA+AGG | 0.404067 | 1_4:+39992940 | None:intergenic |
| TAAGATGGTGGAGTTGGGTT+CGG | 0.419375 | 1_4:+39992316 | None:intergenic |
| TTACTTGATGTATTAAGAAA+GGG | 0.448647 | 1_4:+39992941 | None:intergenic |
| TTCTTCAAGGAGGGTGATTG+AGG | 0.449123 | 1_4:+39996767 | None:intergenic |
| TTTGTCAGATGATGATGGTT+TGG | 0.451681 | 1_4:-39992491 | Msa0162710:CDS |
| GAGGAAGGAAGCAGTTAAGA+TGG | 0.457991 | 1_4:+39992301 | None:intergenic |
| TGCTCTTCATTTGCTCTCCA+AGG | 0.461860 | 1_4:-39996639 | Msa0162710:intron |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | 1_4:+39995620 | None:intergenic |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | 1_4:+39996731 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | 1_4:+39995604 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | 1_4:+39996715 | None:intergenic |
| TGAATGAAAACTTTGTGTTA+GGG | 0.469491 | 1_4:+39993812 | None:intergenic |
| CAGTTGGTCGAGCTTTGGAC+AGG | 0.472419 | 1_4:-39992435 | Msa0162710:CDS |
| GCAAGTCTTAAATCTTCAAA+TGG | 0.486164 | 1_4:+39992911 | None:intergenic |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | 1_4:-39995614 | Msa0162710:CDS |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | 1_4:-39996725 | Msa0162710:CDS |
| GCAGTTAAGATGGTGGAGTT+GGG | 0.497274 | 1_4:+39992311 | None:intergenic |
| AAGAACTCGCACCGTTATTG+TGG | 0.516389 | 1_4:-39994517 | Msa0162710:CDS |
| TCTTCAAGGAGGGTGATTGA+GGG | 0.516540 | 1_4:+39996768 | None:intergenic |
| GGCAGCAATGACTCCAAGAC+TGG | 0.526684 | 1_4:+39992889 | None:intergenic |
| TCGAGCTTTGGACAGGATGT+TGG | 0.529344 | 1_4:-39992428 | Msa0162710:CDS |
| AGTCATTGCTGCCATGGTAA+AGG | 0.543352 | 1_4:-39992879 | Msa0162710:intron |
| GAAGGAAGCAGTTAAGATGG+TGG | 0.550389 | 1_4:+39992304 | None:intergenic |
| CCAATTGAAGTCCACAATAA+CGG | 0.550671 | 1_4:+39994506 | None:intergenic |
| TCTTGGAGTCATTGCTGCCA+TGG | 0.555856 | 1_4:-39992885 | Msa0162710:CDS |
| AATTCATTATTCTTCAAGGA+GGG | 0.558130 | 1_4:+39996758 | None:intergenic |
| TTCAAGGAGGGTGATTGAGG+GGG | 0.561905 | 1_4:+39996770 | None:intergenic |
| AGCTTTAAAAGACGAGGTGA+AGG | 0.570450 | 1_4:+39992388 | None:intergenic |
| ATGAAAACTTTGTGTTAGGG+TGG | 0.574572 | 1_4:+39993815 | None:intergenic |
| TCAAGGAGGGTGATTGAGGG+GGG | 0.591467 | 1_4:+39996771 | None:intergenic |
| ATACAACATCTTGTTGCCAA+TGG | 0.605197 | 1_4:+39995598 | None:intergenic |
| GTACAACATCTTGTTGCCAA+TGG | 0.613212 | 1_4:+39996709 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | 1_4:+39995607 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | 1_4:+39996718 | None:intergenic |
| TGAAAACTTTGTGTTAGGGT+GGG | 0.623871 | 1_4:+39993816 | None:intergenic |
| AAATTCATTATTCTTCAAGG+AGG | 0.632490 | 1_4:+39996757 | None:intergenic |
| ATAGAATAATACCTTTACCA+TGG | 0.642599 | 1_4:+39992868 | None:intergenic |
| CTTCAAGGAGGGTGATTGAG+GGG | 0.647804 | 1_4:+39996769 | None:intergenic |
| ATCATAAGCTTTAAAAGACG+AGG | 0.660763 | 1_4:+39992382 | None:intergenic |
| TTTGTGAGACTTGTATAACA+CGG | 0.661280 | 1_4:+39992358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTAAAAAAATATAAAT+GGG | + | chr1_4:39992646-39992665 | None:intergenic | 10.0% |
| !! | ATTGAGTAAAAAAATATAAA+TGG | + | chr1_4:39992647-39992666 | None:intergenic | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | - | chr1_4:39992750-39992769 | Msa0162710:intron | 10.0% |
| !!! | GATTAACATAATATTTTTTT+TGG | + | chr1_4:39992988-39993007 | None:intergenic | 10.0% |
| !! | TTGAGTAAAAAAATATAAAT+GGG | + | chr1_4:39992646-39992665 | None:intergenic | 10.0% |
| !! | ATTGAGTAAAAAAATATAAA+TGG | + | chr1_4:39992647-39992666 | None:intergenic | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | - | chr1_4:39992750-39992769 | Msa0162710:intron | 10.0% |
| !!! | TATTTTTTATATGAAATACA+AGG | - | chr1_4:39996002-39996021 | Msa0162710:intron | 10.0% |
| !!! | ATTTTTTATATGAAATACAA+GGG | - | chr1_4:39996003-39996022 | Msa0162710:intron | 10.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | + | chr1_4:39992346-39992365 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | + | chr1_4:39992645-39992664 | None:intergenic | 15.0% |
| !!! | AATGATATTTTTGGTAAAAT+AGG | - | chr1_4:39992941-39992960 | Msa0162710:CDS | 15.0% |
| !!! | ATGATATTTTTGGTAAAATA+GGG | - | chr1_4:39992942-39992961 | Msa0162710:CDS | 15.0% |
| !! | AACAAAAATAATAAAAGAGT+CGG | - | chr1_4:39993136-39993155 | Msa0162710:intron | 15.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | + | chr1_4:39992346-39992365 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | + | chr1_4:39992645-39992664 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTATAGTGAAGT+GGG | + | chr1_4:39994232-39994251 | None:intergenic | 15.0% |
| !!! | AATTTTTTATTATAGTGAAG+TGG | + | chr1_4:39994233-39994252 | None:intergenic | 15.0% |
| !!! | ATATATATCATTGATTTCAA+TGG | - | chr1_4:39994366-39994385 | Msa0162710:intron | 15.0% |
| !! | AAATATTTGTGTTAACAAAT+AGG | + | chr1_4:39994760-39994779 | None:intergenic | 15.0% |
| !!! | AAATTTAAAATTTCACTTCA+TGG | + | chr1_4:39995009-39995028 | None:intergenic | 15.0% |
| !! | TAAGAAGAAAATAAAAACAA+CGG | + | chr1_4:39995202-39995221 | None:intergenic | 15.0% |
| !! | ACCAAAAAAAAAAAAAAAGA+AGG | + | chr1_4:39995732-39995751 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGAATAAAGA+AGG | + | chr1_4:39995767-39995786 | None:intergenic | 15.0% |
| !!! | GACTTTTTTTTGTATAAAAA+TGG | - | chr1_4:39995787-39995806 | Msa0162710:intron | 15.0% |
| !!! | TTTTTTATATGAAATACAAG+GGG | - | chr1_4:39996004-39996023 | Msa0162710:intron | 15.0% |
| !!! | ATTTTTTTTTTCATGATTGA+TGG | - | chr1_4:39996250-39996269 | Msa0162710:intron | 15.0% |
| !! | AATTCTTACAAAATACCAAA+TGG | + | chr1_4:39992674-39992693 | None:intergenic | 20.0% |
| !!! | TTTGGTATTTTGTAAGAATT+AGG | - | chr1_4:39992674-39992693 | Msa0162710:intron | 20.0% |
| !!! | CAAATATTTTTCCCTAAAAA+TGG | + | chr1_4:39992850-39992869 | None:intergenic | 20.0% |
| !!! | TGATATTTTTGGTAAAATAG+GGG | - | chr1_4:39992943-39992962 | Msa0162710:CDS | 20.0% |
| !!! | ATGAAAAACAACATTGATTT+AGG | - | chr1_4:39993047-39993066 | Msa0162710:intron | 20.0% |
| !! | ACAAAAATAATAAAAGAGTC+GGG | - | chr1_4:39993137-39993156 | Msa0162710:intron | 20.0% |
| !! | TTCTTACAAAATATACCAAA+TGG | + | chr1_4:39993792-39993811 | None:intergenic | 20.0% |
| !!! | TGGTATATTTTGTAAGAATT+AGG | - | chr1_4:39993794-39993813 | Msa0162710:intron | 20.0% |
| !! | TTAACGCATATAAGAATATT+TGG | + | chr1_4:39993990-39994009 | None:intergenic | 20.0% |
| !!! | ATTCTTTTATTAACTAGCTT+TGG | - | chr1_4:39994010-39994029 | Msa0162710:CDS | 20.0% |
| !! | GAACAATGAAATATGAAATT+AGG | - | chr1_4:39994183-39994202 | Msa0162710:intron | 20.0% |
| !!! | TACTATTGCAATATTTTTAC+AGG | - | chr1_4:39994614-39994633 | Msa0162710:intron | 20.0% |
| !! | TTATTTACAGTAGAATTTCT+AGG | - | chr1_4:39994678-39994697 | Msa0162710:intron | 20.0% |
| !!! | CTTTATTTTTCTTTCTCTTT+TGG | - | chr1_4:39994734-39994753 | Msa0162710:intron | 20.0% |
| !! | TGGAAACAAAAAACATAAAA+TGG | + | chr1_4:39994785-39994804 | None:intergenic | 20.0% |
| !! | TTAAATAGTTCACTCTATAT+TGG | - | chr1_4:39994900-39994919 | Msa0162710:intron | 20.0% |
| !!! | TGAAATTTTAAATTTCTCTC+AGG | - | chr1_4:39995014-39995033 | Msa0162710:intron | 20.0% |
| !! | TTGATAAGTACAATAATAGT+TGG | + | chr1_4:39995356-39995375 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCTAGAAATG+AGG | - | chr1_4:39995523-39995542 | Msa0162710:intron | 20.0% |
| !! | TTTATAATTGCTAGAAATGA+GGG | - | chr1_4:39995524-39995543 | Msa0162710:intron | 20.0% |
| !! | AAATATGTCACATAAATTGA+TGG | - | chr1_4:39995610-39995629 | Msa0162710:CDS | 20.0% |
| !!! | GCCTTCTTTTTTTTTTTTTT+TGG | - | chr1_4:39995728-39995747 | Msa0162710:intron | 20.0% |
| !! | TTACTTGATGTATTAAGAAA+GGG | + | chr1_4:39996159-39996178 | None:intergenic | 20.0% |
| !!! | TGTAGTTTTTATCAAAATTG+TGG | + | chr1_4:39996484-39996503 | None:intergenic | 20.0% |
| !! | ATTTCATTAGGAGTTATAAT+TGG | + | chr1_4:39996544-39996563 | None:intergenic | 20.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | + | chr1_4:39992342-39992361 | None:intergenic | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | + | chr1_4:39992343-39992362 | None:intergenic | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | + | chr1_4:39992490-39992509 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | - | chr1_4:39992488-39992507 | Msa0162710:CDS | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | - | chr1_4:39992489-39992508 | Msa0162710:CDS | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | - | chr1_4:39992582-39992601 | Msa0162710:intron | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | - | chr1_4:39992583-39992602 | Msa0162710:intron | 25.0% |
| !! | TTTTACTCAATTCAACCATT+TGG | - | chr1_4:39992656-39992675 | Msa0162710:intron | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | - | chr1_4:39992680-39992699 | Msa0162710:intron | 25.0% |
| !!! | TATAGCTTTTTGACTCATTT+GGG | + | chr1_4:39992713-39992732 | None:intergenic | 25.0% |
| !!! | ATATAGCTTTTTGACTCATT+TGG | + | chr1_4:39992714-39992733 | None:intergenic | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | + | chr1_4:39992797-39992816 | None:intergenic | 25.0% |
| !!! | TTTATCTTGTTGCCATTTTT+AGG | - | chr1_4:39992835-39992854 | Msa0162710:intron | 25.0% |
| !!! | TTATCTTGTTGCCATTTTTA+GGG | - | chr1_4:39992836-39992855 | Msa0162710:intron | 25.0% |
| ! | TTAGGGAAAAATATTTGAGT+TGG | - | chr1_4:39992853-39992872 | Msa0162710:intron | 25.0% |
| !! | TAGGGAAAAATATTTGAGTT+GGG | - | chr1_4:39992854-39992873 | Msa0162710:intron | 25.0% |
| !! | CAAAACTTGAATTTTGAACT+GGG | - | chr1_4:39992910-39992929 | Msa0162710:CDS | 25.0% |
| !! | AAAACTTGAATTTTGAACTG+GGG | - | chr1_4:39992911-39992930 | Msa0162710:CDS | 25.0% |
| ! | CAAAAATAATAAAAGAGTCG+GGG | - | chr1_4:39993138-39993157 | Msa0162710:intron | 25.0% |
| ! | GAATTTCAACTTTCTTTATG+TGG | - | chr1_4:39993189-39993208 | Msa0162710:intron | 25.0% |
| ! | AAATAAATCTCATCCATCAA+TGG | - | chr1_4:39993407-39993426 | Msa0162710:intron | 25.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | + | chr1_4:39992342-39992361 | None:intergenic | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | + | chr1_4:39992343-39992362 | None:intergenic | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | + | chr1_4:39992490-39992509 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | - | chr1_4:39992488-39992507 | Msa0162710:CDS | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | - | chr1_4:39992489-39992508 | Msa0162710:CDS | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | - | chr1_4:39992582-39992601 | Msa0162710:intron | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | - | chr1_4:39992583-39992602 | Msa0162710:intron | 25.0% |
| !! | TTTTACTCAATTCAACCATT+TGG | - | chr1_4:39992656-39992675 | Msa0162710:intron | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | - | chr1_4:39992680-39992699 | Msa0162710:intron | 25.0% |
| !!! | TATAGCTTTTTGACTCATTT+GGG | + | chr1_4:39992713-39992732 | None:intergenic | 25.0% |
| !!! | ATATAGCTTTTTGACTCATT+TGG | + | chr1_4:39992714-39992733 | None:intergenic | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | + | chr1_4:39992797-39992816 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAAAATCA+TGG | + | chr1_4:39994085-39994104 | None:intergenic | 25.0% |
| ! | GAAGAAATACATGTAGTTAA+AGG | - | chr1_4:39994111-39994130 | Msa0162710:intron | 25.0% |
| !!! | AATCCATTTCTAAAATCACT+TGG | - | chr1_4:39994404-39994423 | Msa0162710:intron | 25.0% |
| !!! | ATCCATTTCTAAAATCACTT+GGG | - | chr1_4:39994405-39994424 | Msa0162710:intron | 25.0% |
| ! | AAACAAATTAAGCATTAGCA+AGG | + | chr1_4:39994935-39994954 | None:intergenic | 25.0% |
| !! | TCTTTTACAATTGTGCTTAT+TGG | - | chr1_4:39994969-39994988 | Msa0162710:intron | 25.0% |
| !! | AACAAGATACAAAACTTGTT+AGG | + | chr1_4:39995144-39995163 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGTATCTTGTTTA+AGG | - | chr1_4:39995146-39995165 | Msa0162710:intron | 25.0% |
| ! | TGAATGAAAACTTTGTGTTA+GGG | + | chr1_4:39995288-39995307 | None:intergenic | 25.0% |
| ! | ATGAATGAAAACTTTGTGTT+AGG | + | chr1_4:39995289-39995308 | None:intergenic | 25.0% |
| !! | ACAAAGTTTTCATTCATGAA+AGG | - | chr1_4:39995292-39995311 | Msa0162710:intron | 25.0% |
| !! | TTAAGTTGTTAGTATCTTCA+TGG | + | chr1_4:39995433-39995452 | None:intergenic | 25.0% |
| ! | ATGAGTGGAATAATATCTAA+CGG | + | chr1_4:39995649-39995668 | None:intergenic | 25.0% |
| ! | GATAAAAAAGTTTAGATGAG+TGG | + | chr1_4:39995664-39995683 | None:intergenic | 25.0% |
| !!! | TTCTCTCTAATTTATTTTGC+AGG | - | chr1_4:39995871-39995890 | Msa0162710:intron | 25.0% |
| !!! | CATCATTTTTCCTCATAAAA+AGG | - | chr1_4:39996048-39996067 | Msa0162710:intron | 25.0% |
| ! | AGAAAGGGATACAAATATAT+AGG | + | chr1_4:39996144-39996163 | None:intergenic | 25.0% |
| ! | CTTACTTGATGTATTAAGAA+AGG | + | chr1_4:39996160-39996179 | None:intergenic | 25.0% |
| ! | ATAGAATAATACCTTTACCA+TGG | + | chr1_4:39996232-39996251 | None:intergenic | 25.0% |
| ! | GAATATCATGTATCAACAAA+TGG | + | chr1_4:39996339-39996358 | None:intergenic | 25.0% |
| !! | AGTTTTTATCAAAATTGTGG+TGG | + | chr1_4:39996481-39996500 | None:intergenic | 25.0% |
| !! | ATTGGTAACTAAATTACAAG+TGG | + | chr1_4:39996526-39996545 | None:intergenic | 25.0% |
| ! | AGTGATATACACATTTCATT+AGG | + | chr1_4:39996556-39996575 | None:intergenic | 25.0% |
| !! | AAAATTTTGTCAGATGATGA+TGG | - | chr1_4:39996601-39996620 | Msa0162710:intron | 25.0% |
| CCCATACATCTTTCAATTTA+TGG | - | chr1_4:39992487-39992506 | Msa0162710:CDS | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | + | chr1_4:39992491-39992510 | None:intergenic | 30.0% | |
| !! | CCAGTTCAAAATTCAAGTTT+TGG | + | chr1_4:39992912-39992931 | None:intergenic | 30.0% |
| ! | CCAAAACTTGAATTTTGAAC+TGG | - | chr1_4:39992909-39992928 | Msa0162710:CDS | 30.0% |
| ! | AAACTTGAATTTTGAACTGG+GGG | - | chr1_4:39992912-39992931 | Msa0162710:CDS | 30.0% |
| ! | GGGGACTAAAATGATATTTT+TGG | - | chr1_4:39992932-39992951 | Msa0162710:CDS | 30.0% |
| TTATCATAGCCTATAGTCAA+TGG | - | chr1_4:39993233-39993252 | Msa0162710:intron | 30.0% | |
| GTTTGTTCGAATTTATCACT+TGG | + | chr1_4:39993384-39993403 | None:intergenic | 30.0% | |
| CCCATACATCTTTCAATTTA+TGG | - | chr1_4:39992487-39992506 | Msa0162710:CDS | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | + | chr1_4:39992491-39992510 | None:intergenic | 30.0% | |
| !! | TAACTAGCTTTGGATAACTA+TGG | - | chr1_4:39994020-39994039 | Msa0162710:CDS | 30.0% |
| GACAATGAATATGAGGAAAA+AGG | - | chr1_4:39994153-39994172 | Msa0162710:intron | 30.0% | |
| !! | AACCCAAGTGATTTTAGAAA+TGG | + | chr1_4:39994410-39994429 | None:intergenic | 30.0% |
| GTTACAATCTTGTTAGTACT+TGG | - | chr1_4:39994475-39994494 | Msa0162710:intron | 30.0% | |
| GAATTGTGAAAGTAAAAGGT+TGG | + | chr1_4:39994805-39994824 | None:intergenic | 30.0% | |
| GTTGGAATTGTGAAAGTAAA+AGG | + | chr1_4:39994809-39994828 | None:intergenic | 30.0% | |
| GAGGGAAAGTTAAAACTAAA+TGG | - | chr1_4:39994849-39994868 | Msa0162710:intron | 30.0% | |
| TAATTTACCACTATCCTTCA+AGG | - | chr1_4:39995488-39995507 | Msa0162710:intron | 30.0% | |
| TATCCTTCAAGGAAATTTGT+TGG | - | chr1_4:39995499-39995518 | Msa0162710:intron | 30.0% | |
| ! | ATCCTTCAAGGAAATTTGTT+GGG | - | chr1_4:39995500-39995519 | Msa0162710:intron | 30.0% |
| ! | TCAAATGTTGCCTTTTTATG+AGG | + | chr1_4:39996061-39996080 | None:intergenic | 30.0% |
| TGTTAGCTGCATATAAGAAA+AGG | + | chr1_4:39996119-39996138 | None:intergenic | 30.0% | |
| GCAAGTCTTAAATCTTCAAA+TGG | + | chr1_4:39996189-39996208 | None:intergenic | 30.0% | |
| TGTTGATACATGATATTCAC+AGG | - | chr1_4:39996341-39996360 | Msa0162710:intron | 30.0% | |
| ATATTCACAGGTTAAGACTA+AGG | - | chr1_4:39996353-39996372 | Msa0162710:intron | 30.0% | |
| TGAAATGTGTATATCACTAC+AGG | - | chr1_4:39996558-39996577 | Msa0162710:intron | 30.0% | |
| !! | ATCATAAGCTTTAAAAGACG+AGG | + | chr1_4:39996718-39996737 | None:intergenic | 30.0% |
| TTTGTGAGACTTGTATAACA+CGG | + | chr1_4:39996742-39996761 | None:intergenic | 30.0% | |
| ACAAGTCTCACAAAAAATGT+AGG | - | chr1_4:39996748-39996767 | Msa0162710:CDS | 30.0% | |
| CAAGTCTCACAAAAAATGTA+GGG | - | chr1_4:39996749-39996768 | Msa0162710:CDS | 30.0% | |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | + | chr1_4:39992445-39992464 | None:intergenic | 35.0% |
| TGTGTCAACTTGTATAGGAT+TGG | + | chr1_4:39992555-39992574 | None:intergenic | 35.0% | |
| TAGTGTGTGTCAACTTGTAT+AGG | + | chr1_4:39992560-39992579 | None:intergenic | 35.0% | |
| ! | AACTTGAATTTTGAACTGGG+GGG | - | chr1_4:39992913-39992932 | Msa0162710:CDS | 35.0% |
| GAAATTCGAGCAATTAGCAT+TGG | + | chr1_4:39993176-39993195 | None:intergenic | 35.0% | |
| GACTATAGGCTATGATAACA+AGG | + | chr1_4:39993231-39993250 | None:intergenic | 35.0% | |
| TAAGTGAGAAAATGATGAGC+GGG | + | chr1_4:39993317-39993336 | None:intergenic | 35.0% | |
| GTAAGTGAGAAAATGATGAG+CGG | + | chr1_4:39993318-39993337 | None:intergenic | 35.0% | |
| ATACAACATCTTGTTGCCAA+TGG | + | chr1_4:39993502-39993521 | None:intergenic | 35.0% | |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | + | chr1_4:39992445-39992464 | None:intergenic | 35.0% |
| TAGTGTGTGTGAACTTGTAT+GGG | + | chr1_4:39993678-39993697 | None:intergenic | 35.0% | |
| ATAGTGTGTGTGAACTTGTA+TGG | + | chr1_4:39993679-39993698 | None:intergenic | 35.0% | |
| AGAGTGTGACAATGAATATG+AGG | - | chr1_4:39994146-39994165 | Msa0162710:intron | 35.0% | |
| ATTTCATCCATGTAGTCATC+TGG | - | chr1_4:39994254-39994273 | Msa0162710:intron | 35.0% | |
| ACTTAAACCAGATGACTACA+TGG | + | chr1_4:39994264-39994283 | None:intergenic | 35.0% | |
| ATGTGATCGACAATGTGAAT+TGG | - | chr1_4:39994298-39994317 | Msa0162710:intron | 35.0% | |
| TGTGATCGACAATGTGAATT+GGG | - | chr1_4:39994299-39994318 | Msa0162710:intron | 35.0% | |
| CCAATTGAAGTCCACAATAA+CGG | + | chr1_4:39994594-39994613 | None:intergenic | 35.0% | |
| ! | CAATACAAAGTCACTTTGGT+TGG | + | chr1_4:39994827-39994846 | None:intergenic | 35.0% |
| TCGTCAATACAAAGTCACTT+TGG | + | chr1_4:39994831-39994850 | None:intergenic | 35.0% | |
| ! | AAAGTGACTTTGTATTGACG+AGG | - | chr1_4:39994830-39994849 | Msa0162710:intron | 35.0% |
| ! | AAGTGACTTTGTATTGACGA+GGG | - | chr1_4:39994831-39994850 | Msa0162710:intron | 35.0% |
| ! | CATGATTTTGTTACAGTGTG+TGG | - | chr1_4:39995255-39995274 | Msa0162710:intron | 35.0% |
| TGAAAACTTTGTGTTAGGGT+GGG | + | chr1_4:39995284-39995303 | None:intergenic | 35.0% | |
| ATGAAAACTTTGTGTTAGGG+TGG | + | chr1_4:39995285-39995304 | None:intergenic | 35.0% | |
| CAAATTTCCTTGAAGGATAG+TGG | + | chr1_4:39995498-39995517 | None:intergenic | 35.0% | |
| ATCCCAACAAATTTCCTTGA+AGG | + | chr1_4:39995505-39995524 | None:intergenic | 35.0% | |
| !! | CTCAAACTACACATTGACTT+GGG | - | chr1_4:39995567-39995586 | Msa0162710:CDS | 35.0% |
| GTGGAATAATATCTAACGGA+GGG | + | chr1_4:39995645-39995664 | None:intergenic | 35.0% | |
| AGTGGAATAATATCTAACGG+AGG | + | chr1_4:39995646-39995665 | None:intergenic | 35.0% | |
| GGATATACCAACTACAAAGT+AGG | - | chr1_4:39995808-39995827 | Msa0162710:intron | 35.0% | |
| ATCAAAATTGTGGTGGTTCA+TGG | + | chr1_4:39996474-39996493 | None:intergenic | 35.0% | |
| !! | TTTGTCAGATGATGATGGTT+TGG | - | chr1_4:39996606-39996625 | Msa0162710:intron | 35.0% |
| GTACAACATCTTGTTGCCAA+TGG | + | chr1_4:39992391-39992410 | None:intergenic | 40.0% | |
| !! | AGAGCATTTTCTCGTAGATC+GGG | + | chr1_4:39992444-39992463 | None:intergenic | 40.0% |
| AGATGTATGGGTACAAACCT+TGG | + | chr1_4:39992478-39992497 | None:intergenic | 40.0% | |
| TCGCAACAATACGTGAAACT+GGG | - | chr1_4:39992884-39992903 | Msa0162710:CDS | 40.0% | |
| ! | TGGGACTATCCATTGACTAT+AGG | + | chr1_4:39993245-39993264 | None:intergenic | 40.0% |
| !! | AGAGCATTTTCTCGTAGATC+GGG | + | chr1_4:39992444-39992463 | None:intergenic | 40.0% |
| TGCTCTTCATTTGCTCTCTA+AGG | - | chr1_4:39993569-39993588 | Msa0162710:intron | 40.0% | |
| TGTGTGAACTTGTATGGGAT+TGG | + | chr1_4:39993673-39993692 | None:intergenic | 40.0% | |
| CCGTTATTGTGGACTTCAAT+TGG | - | chr1_4:39994591-39994610 | Msa0162710:intron | 40.0% | |
| TTCACTTCATGGTAAGTGCA+AGG | + | chr1_4:39994998-39995017 | None:intergenic | 40.0% | |
| !! | AGATTTTCTGGTGAAAGAGC+AGG | + | chr1_4:39995057-39995076 | None:intergenic | 40.0% |
| ! | TGTGCAGCAGTAAGATTTTC+TGG | + | chr1_4:39995069-39995088 | None:intergenic | 40.0% |
| CAATACTCTTGCTCTACTTC+AGG | - | chr1_4:39995104-39995123 | Msa0162710:intron | 40.0% | |
| GGGTTAGAAACCAAACAAAC+AGG | - | chr1_4:39995544-39995563 | Msa0162710:CDS | 40.0% | |
| GTAGTTTGAGCCTGTTTGTT+TGG | + | chr1_4:39995557-39995576 | None:intergenic | 40.0% | |
| ! | GCTCAAACTACACATTGACT+TGG | - | chr1_4:39995566-39995585 | Msa0162710:CDS | 40.0% |
| GAATAATATCTAACGGAGGG+AGG | + | chr1_4:39995642-39995661 | None:intergenic | 40.0% | |
| CCTAAGACCTACTTTGTAGT+TGG | + | chr1_4:39995818-39995837 | None:intergenic | 40.0% | |
| CCAACTACAAAGTAGGTCTT+AGG | - | chr1_4:39995815-39995834 | Msa0162710:intron | 40.0% | |
| ! | GATTTAAGACTTGCCAGTCT+TGG | - | chr1_4:39996195-39996214 | Msa0162710:intron | 40.0% |
| GTTAAGACTAAGGAAGCGAT+AGG | - | chr1_4:39996363-39996382 | Msa0162710:intron | 40.0% | |
| TGCCTACGCAATATGGAAAT+TGG | - | chr1_4:39996417-39996436 | Msa0162710:intron | 40.0% | |
| TGCCAATTTCCATATTGCGT+AGG | + | chr1_4:39996422-39996441 | None:intergenic | 40.0% | |
| CCAACTGCAAAAAAACGATC+TGG | + | chr1_4:39996649-39996668 | None:intergenic | 40.0% | |
| !!! | CCAGATCGTTTTTTTGCAGT+TGG | - | chr1_4:39996646-39996665 | Msa0162710:CDS | 40.0% |
| !! | AGCTTTAAAAGACGAGGTGA+AGG | + | chr1_4:39996712-39996731 | None:intergenic | 40.0% |
| TCTTCAAGGAGGGTGATTGA+GGG | + | chr1_4:39992332-39992351 | None:intergenic | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | + | chr1_4:39992333-39992352 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | + | chr1_4:39992443-39992462 | None:intergenic | 45.0% |
| TGCTCTTCATTTGCTCTCCA+AGG | - | chr1_4:39992458-39992477 | Msa0162710:CDS | 45.0% | |
| AGTCTCGTAACATGGTGCAT+CGG | + | chr1_4:39992620-39992639 | None:intergenic | 45.0% | |
| GTCGCAACAATACGTGAAAC+TGG | - | chr1_4:39992883-39992902 | Msa0162710:CDS | 45.0% | |
| CGCAACAATACGTGAAACTG+GGG | - | chr1_4:39992885-39992904 | Msa0162710:CDS | 45.0% | |
| TAGTCAATGGATAGTCCCAC+TGG | - | chr1_4:39993246-39993265 | Msa0162710:intron | 45.0% | |
| TCTTCAAGGAGGGTGATTGA+GGG | + | chr1_4:39992332-39992351 | None:intergenic | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | + | chr1_4:39992333-39992352 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | + | chr1_4:39992443-39992462 | None:intergenic | 45.0% |
| AGTCTCGTAACATGGTGCAT+CGG | + | chr1_4:39992620-39992639 | None:intergenic | 45.0% | |
| AAGAACTCGCACCGTTATTG+TGG | - | chr1_4:39994580-39994599 | Msa0162710:intron | 45.0% | |
| AGTCATTGCTGCCATGGTAA+AGG | - | chr1_4:39996218-39996237 | Msa0162710:intron | 45.0% | |
| GCATTACTTCAGTTGCGAGA+AGG | + | chr1_4:39996392-39996411 | None:intergenic | 45.0% | |
| TCCATATTGCGTAGGCACAA+CGG | + | chr1_4:39996414-39996433 | None:intergenic | 45.0% | |
| ! | TTTTGCAGTTGGTCGAGCTT+TGG | - | chr1_4:39996657-39996676 | Msa0162710:CDS | 45.0% |
| !! | TAAGATGGTGGAGTTGGGTT+CGG | + | chr1_4:39996784-39996803 | None:intergenic | 45.0% |
| !!! | TTTTCATAATTATAATTTTA+TGG | + | chr1_4:39993034-39993053 | None:intergenic | 5.0% |
| !! | AAAATTATAATATTTATGTA+TGG | + | chr1_4:39995175-39995194 | None:intergenic | 5.0% |
| TTCAAGGAGGGTGATTGAGG+GGG | + | chr1_4:39992330-39992349 | None:intergenic | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | + | chr1_4:39992331-39992350 | None:intergenic | 50.0% | |
| CATCTTGTTGCCAATGGTGC+TGG | + | chr1_4:39992385-39992404 | None:intergenic | 50.0% | |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | + | chr1_4:39992628-39992647 | None:intergenic | 50.0% |
| ! | CACGTGTTTTGCATGCCAGT+GGG | + | chr1_4:39993264-39993283 | None:intergenic | 50.0% |
| ! | ACACGTGTTTTGCATGCCAG+TGG | + | chr1_4:39993265-39993284 | None:intergenic | 50.0% |
| CTGGCATGCAAAACACGTGT+TGG | - | chr1_4:39993265-39993284 | Msa0162710:intron | 50.0% | |
| AAATGATGAGCGGGCAAGTG+TGG | + | chr1_4:39993308-39993327 | None:intergenic | 50.0% | |
| TTCAAGGAGGGTGATTGAGG+GGG | + | chr1_4:39992330-39992349 | None:intergenic | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | + | chr1_4:39992331-39992350 | None:intergenic | 50.0% | |
| CATCTTGTTGCCAATGGTGC+TGG | + | chr1_4:39992385-39992404 | None:intergenic | 50.0% | |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | + | chr1_4:39992628-39992647 | None:intergenic | 50.0% |
| TCTTGGAGTCATTGCTGCCA+TGG | - | chr1_4:39996212-39996231 | Msa0162710:intron | 50.0% | |
| !! | TCGAGCTTTGGACAGGATGT+TGG | - | chr1_4:39996669-39996688 | Msa0162710:CDS | 50.0% |
| TCAAGGAGGGTGATTGAGGG+GGG | + | chr1_4:39992329-39992348 | None:intergenic | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | + | chr1_4:39992369-39992388 | None:intergenic | 55.0% | |
| ACATCTGCCTCCAGCACCAT+TGG | - | chr1_4:39992372-39992391 | Msa0162710:CDS | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | + | chr1_4:39992382-39992401 | None:intergenic | 55.0% |
| AGCGGGCAAGTGTGGCAATA+TGG | + | chr1_4:39993300-39993319 | None:intergenic | 55.0% | |
| GGGGGGAAATTCGCCATTGA+TGG | + | chr1_4:39993423-39993442 | None:intergenic | 55.0% | |
| TCAAGGAGGGTGATTGAGGG+GGG | + | chr1_4:39992329-39992348 | None:intergenic | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | + | chr1_4:39992369-39992388 | None:intergenic | 55.0% | |
| ACATCTGCCTCCAGCACCAT+TGG | - | chr1_4:39992372-39992391 | Msa0162710:CDS | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | + | chr1_4:39992382-39992401 | None:intergenic | 55.0% |
| GGCAGCAATGACTCCAAGAC+TGG | + | chr1_4:39996211-39996230 | None:intergenic | 55.0% | |
| GCCGTTGTGCCTACGCAATA+TGG | - | chr1_4:39996410-39996429 | Msa0162710:intron | 55.0% | |
| !! | CAGTTGGTCGAGCTTTGGAC+AGG | - | chr1_4:39996662-39996681 | Msa0162710:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 39992315 | 39996804 | 39992315 | ID=Msa0162710;Name=Msa0162710 |
| chr1_4 | mRNA | 39992315 | 39996804 | 39992315 | ID=Msa0162710-mRNA-1;Parent=Msa0162710;Name=Msa0162710-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0|0|1|0.66|0.71|7|0|269 |
| chr1_4 | exon | 39996640 | 39996804 | 39996640 | ID=Msa0162710-mRNA-1:exon:11625;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39995529 | 39995657 | 39995529 | ID=Msa0162710-mRNA-1:exon:11624;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39994484 | 39994555 | 39994484 | ID=Msa0162710-mRNA-1:exon:11623;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39993994 | 39994083 | 39993994 | ID=Msa0162710-mRNA-1:exon:11622;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39993806 | 39993848 | 39993806 | ID=Msa0162710-mRNA-1:exon:11621;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39992880 | 39992986 | 39992880 | ID=Msa0162710-mRNA-1:exon:11620;Parent=Msa0162710-mRNA-1 |
| chr1_4 | exon | 39992315 | 39992518 | 39992315 | ID=Msa0162710-mRNA-1:exon:11619;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39996640 | 39996804 | 39996640 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39995529 | 39995657 | 39995529 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39994484 | 39994555 | 39994484 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39993994 | 39994083 | 39993994 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39993806 | 39993848 | 39993806 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39992880 | 39992986 | 39992880 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| chr1_4 | CDS | 39992315 | 39992518 | 39992315 | ID=Msa0162710-mRNA-1:cds;Parent=Msa0162710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
