Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443350 | sp|Q6P819|CNOT9_XENTR | 45.339 | 236 | 88 | 2 | 61 | 257 | 9 | 242 | 5.14e-60 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443350 | G7I8I6 | 77.559 | 254 | 18 | 1 | 55 | 269 | 12 | 265 | 1.33e-132 | 385 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1443350 | TR | Rcd1-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162710 | Msa1443350 | 0.963577 | 2.956451e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443350 | MtrunA17_Chr1g0177151 | 77.559 | 254 | 18 | 1 | 55 | 269 | 12 | 265 | 2.56e-136 | 385 |
| Msa1443350 | MtrunA17_Chr7g0224601 | 53.571 | 224 | 61 | 2 | 77 | 257 | 28 | 251 | 1.37e-74 | 229 |
| Msa1443350 | MtrunA17_Chr3g0099561 | 55.000 | 220 | 60 | 1 | 77 | 257 | 26 | 245 | 6.00e-74 | 228 |
| Msa1443350 | MtrunA17_Chr6g0477171 | 50.754 | 199 | 59 | 1 | 101 | 260 | 48 | 246 | 1.30e-56 | 182 |
| Msa1443350 | MtrunA17_Chr5g0444621 | 47.340 | 188 | 60 | 1 | 109 | 257 | 52 | 239 | 1.14e-52 | 172 |
| Msa1443350 | MtrunA17_Chr8g0392781 | 58.599 | 157 | 60 | 1 | 51 | 202 | 7 | 163 | 6.39e-51 | 170 |
| Msa1443350 | MtrunA17_Chr8g0392781 | 56.338 | 71 | 28 | 1 | 200 | 267 | 234 | 304 | 8.61e-20 | 87.4 |
| Msa1443350 | MtrunA17_Chr3g0083821 | 55.263 | 114 | 51 | 0 | 95 | 208 | 12 | 125 | 9.01e-37 | 127 |
| Msa1443350 | MtrunA17_Chr5g0444631 | 63.462 | 52 | 19 | 0 | 151 | 202 | 4 | 55 | 1.75e-17 | 74.7 |
| Msa1443350 | MtrunA17_Chr3g0083811 | 53.226 | 62 | 29 | 0 | 196 | 257 | 11 | 72 | 3.69e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443350 | AT3G20800.1 | 52.479 | 242 | 70 | 3 | 61 | 257 | 17 | 258 | 9.11e-74 | 228 |
| Msa1443350 | AT5G12980.1 | 52.000 | 225 | 69 | 1 | 72 | 257 | 30 | 254 | 1.68e-71 | 222 |
| Msa1443350 | AT2G32550.2 | 30.556 | 216 | 97 | 4 | 92 | 257 | 67 | 279 | 1.63e-21 | 92.4 |
| Msa1443350 | AT2G32550.3 | 30.244 | 205 | 90 | 4 | 103 | 257 | 39 | 240 | 3.81e-20 | 87.8 |
Find 47 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTCATTTGCTCTCTA+AGG | 0.219918 | tig0030427:+32849 | Msa1443350:CDS |
| ATGAATGAAAACTTTGTGTT+AGG | 0.318229 | tig0030427:-34566 | None:intergenic |
| CAATACTCTTGCTCTACTTC+AGG | 0.377796 | tig0030427:+34384 | Msa1443350:CDS |
| CCGTTATTGTGGACTTCAAT+TGG | 0.388452 | tig0030427:+33871 | Msa1443350:CDS |
| AGCAGTTAAGATGGTGGAGT+TGG | 0.389913 | tig0030427:-36066 | None:intergenic |
| AGAAAGGGATACAAATATAT+AGG | 0.395209 | tig0030427:-35420 | None:intergenic |
| GATTTAAGACTTGCCAGTCT+TGG | 0.402589 | tig0030427:+35474 | Msa1443350:CDS |
| CTTACTTGATGTATTAAGAA+AGG | 0.404067 | tig0030427:-35436 | None:intergenic |
| TAAGATGGTGGAGTTGGGTT+CGG | 0.419375 | tig0030427:-36060 | None:intergenic |
| TTACTTGATGTATTAAGAAA+GGG | 0.448647 | tig0030427:-35435 | None:intergenic |
| TTCTTCAAGGAGGGTGATTG+AGG | 0.449123 | tig0030427:-31610 | None:intergenic |
| TTTGTCAGATGATGATGGTT+TGG | 0.451681 | tig0030427:+35885 | Msa1443350:CDS |
| GAGGAAGGAAGCAGTTAAGA+TGG | 0.457991 | tig0030427:-36075 | None:intergenic |
| TGCTCTTCATTTGCTCTCCA+AGG | 0.461860 | tig0030427:+31738 | Msa1443350:CDS |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | tig0030427:-31646 | None:intergenic |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | tig0030427:-32757 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | tig0030427:-31662 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | tig0030427:-32773 | None:intergenic |
| TGAATGAAAACTTTGTGTTA+GGG | 0.469491 | tig0030427:-34565 | None:intergenic |
| CAGTTGGTCGAGCTTTGGAC+AGG | 0.472419 | tig0030427:+35941 | Msa1443350:CDS |
| GCAAGTCTTAAATCTTCAAA+TGG | 0.486164 | tig0030427:-35465 | None:intergenic |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | tig0030427:+31652 | Msa1443350:CDS |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | tig0030427:+32763 | Msa1443350:CDS |
| GCAGTTAAGATGGTGGAGTT+GGG | 0.497274 | tig0030427:-36065 | None:intergenic |
| AAGAACTCGCACCGTTATTG+TGG | 0.516389 | tig0030427:+33860 | Msa1443350:CDS |
| TCTTCAAGGAGGGTGATTGA+GGG | 0.516540 | tig0030427:-31609 | None:intergenic |
| GGCAGCAATGACTCCAAGAC+TGG | 0.526684 | tig0030427:-35487 | None:intergenic |
| TCGAGCTTTGGACAGGATGT+TGG | 0.529344 | tig0030427:+35948 | Msa1443350:CDS |
| AGTCATTGCTGCCATGGTAA+AGG | 0.543352 | tig0030427:+35497 | Msa1443350:CDS |
| GAAGGAAGCAGTTAAGATGG+TGG | 0.550389 | tig0030427:-36072 | None:intergenic |
| CCAATTGAAGTCCACAATAA+CGG | 0.550671 | tig0030427:-33871 | None:intergenic |
| TCTTGGAGTCATTGCTGCCA+TGG | 0.555856 | tig0030427:+35491 | Msa1443350:CDS |
| AATTCATTATTCTTCAAGGA+GGG | 0.558130 | tig0030427:-31619 | None:intergenic |
| TTCAAGGAGGGTGATTGAGG+GGG | 0.561905 | tig0030427:-31607 | None:intergenic |
| AGCTTTAAAAGACGAGGTGA+AGG | 0.570450 | tig0030427:-35988 | None:intergenic |
| ATGAAAACTTTGTGTTAGGG+TGG | 0.574572 | tig0030427:-34562 | None:intergenic |
| TCAAGGAGGGTGATTGAGGG+GGG | 0.591467 | tig0030427:-31606 | None:intergenic |
| ATACAACATCTTGTTGCCAA+TGG | 0.605197 | tig0030427:-32779 | None:intergenic |
| GTACAACATCTTGTTGCCAA+TGG | 0.613212 | tig0030427:-31668 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | tig0030427:-31659 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | tig0030427:-32770 | None:intergenic |
| TGAAAACTTTGTGTTAGGGT+GGG | 0.623871 | tig0030427:-34561 | None:intergenic |
| AAATTCATTATTCTTCAAGG+AGG | 0.632490 | tig0030427:-31620 | None:intergenic |
| ATAGAATAATACCTTTACCA+TGG | 0.642599 | tig0030427:-35508 | None:intergenic |
| CTTCAAGGAGGGTGATTGAG+GGG | 0.647804 | tig0030427:-31608 | None:intergenic |
| ATCATAAGCTTTAAAAGACG+AGG | 0.660763 | tig0030427:-35994 | None:intergenic |
| TTTGTGAGACTTGTATAACA+CGG | 0.661280 | tig0030427:-36018 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTAAAAAAATATAAAT+GGG | - | tig0030427:31926-31945 | None:intergenic | 10.0% |
| !! | ATTGAGTAAAAAAATATAAA+TGG | - | tig0030427:31927-31946 | None:intergenic | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | + | tig0030427:32030-32049 | Msa1443350:intron | 10.0% |
| !!! | GATTAACATAATATTTTTTT+TGG | - | tig0030427:32268-32287 | None:intergenic | 10.0% |
| !! | TTGAGTAAAAAAATATAAAT+GGG | - | tig0030427:31926-31945 | None:intergenic | 10.0% |
| !! | ATTGAGTAAAAAAATATAAA+TGG | - | tig0030427:31927-31946 | None:intergenic | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | + | tig0030427:32030-32049 | Msa1443350:intron | 10.0% |
| !!! | TATTTTTTATATGAAATACA+AGG | + | tig0030427:35281-35300 | Msa1443350:intron | 10.0% |
| !!! | ATTTTTTATATGAAATACAA+GGG | + | tig0030427:35282-35301 | Msa1443350:intron | 10.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | - | tig0030427:31626-31645 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | - | tig0030427:31925-31944 | None:intergenic | 15.0% |
| !!! | AATGATATTTTTGGTAAAAT+AGG | + | tig0030427:32221-32240 | Msa1443350:intron | 15.0% |
| !!! | ATGATATTTTTGGTAAAATA+GGG | + | tig0030427:32222-32241 | Msa1443350:intron | 15.0% |
| !! | AACAAAAATAATAAAAGAGT+CGG | + | tig0030427:32416-32435 | Msa1443350:intron | 15.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | - | tig0030427:31626-31645 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | - | tig0030427:31925-31944 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTATAGTGAAGT+GGG | - | tig0030427:33512-33531 | None:intergenic | 15.0% |
| !!! | AATTTTTTATTATAGTGAAG+TGG | - | tig0030427:33513-33532 | None:intergenic | 15.0% |
| !!! | ATATATATCATTGATTTCAA+TGG | + | tig0030427:33646-33665 | Msa1443350:intron | 15.0% |
| !! | AAATATTTGTGTTAACAAAT+AGG | - | tig0030427:34040-34059 | None:intergenic | 15.0% |
| !!! | AAATTTAAAATTTCACTTCA+TGG | - | tig0030427:34289-34308 | None:intergenic | 15.0% |
| !! | TAAGAAGAAAATAAAAACAA+CGG | - | tig0030427:34482-34501 | None:intergenic | 15.0% |
| !! | TACCAAAAAAAAAAAAAAGA+AGG | - | tig0030427:35012-35031 | None:intergenic | 15.0% |
| !!! | ATTTTATTAGAGAATAAAGA+AGG | - | tig0030427:35046-35065 | None:intergenic | 15.0% |
| !!! | GACTTTTTTTTGTATAAAAA+TGG | + | tig0030427:35066-35085 | Msa1443350:intron | 15.0% |
| !!! | TTTTTTATATGAAATACAAG+GGG | + | tig0030427:35283-35302 | Msa1443350:intron | 15.0% |
| !!! | ATTTTTTTTTTCATGATTGA+TGG | + | tig0030427:35529-35548 | Msa1443350:intron | 15.0% |
| !! | AATTCTTACAAAATACCAAA+TGG | - | tig0030427:31954-31973 | None:intergenic | 20.0% |
| !!! | TTTGGTATTTTGTAAGAATT+AGG | + | tig0030427:31954-31973 | Msa1443350:intron | 20.0% |
| !!! | CAAATATTTTTCCCTAAAAA+TGG | - | tig0030427:32130-32149 | None:intergenic | 20.0% |
| !!! | TGATATTTTTGGTAAAATAG+GGG | + | tig0030427:32223-32242 | Msa1443350:intron | 20.0% |
| !!! | ATGAAAAACAACATTGATTT+AGG | + | tig0030427:32327-32346 | Msa1443350:intron | 20.0% |
| !! | ACAAAAATAATAAAAGAGTC+GGG | + | tig0030427:32417-32436 | Msa1443350:intron | 20.0% |
| !! | TTCTTACAAAATATACCAAA+TGG | - | tig0030427:33072-33091 | None:intergenic | 20.0% |
| !!! | TGGTATATTTTGTAAGAATT+AGG | + | tig0030427:33074-33093 | Msa1443350:intron | 20.0% |
| !! | TTAACGCATATAAGAATATT+TGG | - | tig0030427:33270-33289 | None:intergenic | 20.0% |
| !!! | ATTCTTTTATTAACTAGCTT+TGG | + | tig0030427:33290-33309 | Msa1443350:intron | 20.0% |
| !! | GAACAATGAAATATGAAATT+AGG | + | tig0030427:33463-33482 | Msa1443350:intron | 20.0% |
| !!! | TACTATTGCAATATTTTTAC+AGG | + | tig0030427:33894-33913 | Msa1443350:CDS | 20.0% |
| !! | TTATTTACAGTAGAATTTCT+AGG | + | tig0030427:33958-33977 | Msa1443350:intron | 20.0% |
| !!! | CTTTATTTTTCTTTCTCTTT+TGG | + | tig0030427:34014-34033 | Msa1443350:intron | 20.0% |
| !! | TGGAAACAAAAAACATAAAA+TGG | - | tig0030427:34065-34084 | None:intergenic | 20.0% |
| !! | TTAAATAGTTCACTCTATAT+TGG | + | tig0030427:34180-34199 | Msa1443350:intron | 20.0% |
| !!! | TGAAATTTTAAATTTCTCTC+AGG | + | tig0030427:34294-34313 | Msa1443350:intron | 20.0% |
| !! | TTGATAAGTACAATAATAGT+TGG | - | tig0030427:34636-34655 | None:intergenic | 20.0% |
| !! | ATTTATAATTGCTAGAAATG+AGG | + | tig0030427:34803-34822 | Msa1443350:intron | 20.0% |
| !! | TTTATAATTGCTAGAAATGA+GGG | + | tig0030427:34804-34823 | Msa1443350:intron | 20.0% |
| !! | AAATATGTCACATAAATTGA+TGG | + | tig0030427:34890-34909 | Msa1443350:intron | 20.0% |
| !!! | TGCCTTCTTTTTTTTTTTTT+TGG | + | tig0030427:35007-35026 | Msa1443350:intron | 20.0% |
| !! | TTACTTGATGTATTAAGAAA+GGG | - | tig0030427:35438-35457 | None:intergenic | 20.0% |
| !!! | TGTAGTTTTTATCAAAATTG+TGG | - | tig0030427:35763-35782 | None:intergenic | 20.0% |
| !! | ATTTCATTAGGAGTTATAAT+TGG | - | tig0030427:35823-35842 | None:intergenic | 20.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | - | tig0030427:31622-31641 | None:intergenic | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | - | tig0030427:31623-31642 | None:intergenic | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | - | tig0030427:31770-31789 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | + | tig0030427:31768-31787 | Msa1443350:intron | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | + | tig0030427:31769-31788 | Msa1443350:intron | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | + | tig0030427:31862-31881 | Msa1443350:intron | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | + | tig0030427:31863-31882 | Msa1443350:intron | 25.0% |
| !! | TTTTACTCAATTCAACCATT+TGG | + | tig0030427:31936-31955 | Msa1443350:intron | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | + | tig0030427:31960-31979 | Msa1443350:intron | 25.0% |
| !!! | TATAGCTTTTTGACTCATTT+GGG | - | tig0030427:31993-32012 | None:intergenic | 25.0% |
| !!! | ATATAGCTTTTTGACTCATT+TGG | - | tig0030427:31994-32013 | None:intergenic | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | - | tig0030427:32077-32096 | None:intergenic | 25.0% |
| !!! | TTTATCTTGTTGCCATTTTT+AGG | + | tig0030427:32115-32134 | Msa1443350:intron | 25.0% |
| !!! | TTATCTTGTTGCCATTTTTA+GGG | + | tig0030427:32116-32135 | Msa1443350:intron | 25.0% |
| ! | TTAGGGAAAAATATTTGAGT+TGG | + | tig0030427:32133-32152 | Msa1443350:intron | 25.0% |
| !! | TAGGGAAAAATATTTGAGTT+GGG | + | tig0030427:32134-32153 | Msa1443350:intron | 25.0% |
| !! | CAAAACTTGAATTTTGAACT+GGG | + | tig0030427:32190-32209 | Msa1443350:intron | 25.0% |
| !! | AAAACTTGAATTTTGAACTG+GGG | + | tig0030427:32191-32210 | Msa1443350:intron | 25.0% |
| ! | CAAAAATAATAAAAGAGTCG+GGG | + | tig0030427:32418-32437 | Msa1443350:intron | 25.0% |
| ! | GAATTTCAACTTTCTTTATG+TGG | + | tig0030427:32469-32488 | Msa1443350:intron | 25.0% |
| ! | AAATAAATCTCATCCATCAA+TGG | + | tig0030427:32687-32706 | Msa1443350:intron | 25.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | - | tig0030427:31622-31641 | None:intergenic | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | - | tig0030427:31623-31642 | None:intergenic | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | - | tig0030427:31770-31789 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | + | tig0030427:31768-31787 | Msa1443350:intron | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | + | tig0030427:31769-31788 | Msa1443350:intron | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | + | tig0030427:31862-31881 | Msa1443350:intron | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | + | tig0030427:31863-31882 | Msa1443350:intron | 25.0% |
| !! | TTTTACTCAATTCAACCATT+TGG | + | tig0030427:31936-31955 | Msa1443350:intron | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | + | tig0030427:31960-31979 | Msa1443350:intron | 25.0% |
| !!! | TATAGCTTTTTGACTCATTT+GGG | - | tig0030427:31993-32012 | None:intergenic | 25.0% |
| !!! | ATATAGCTTTTTGACTCATT+TGG | - | tig0030427:31994-32013 | None:intergenic | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | - | tig0030427:32077-32096 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAAAATCA+TGG | - | tig0030427:33365-33384 | None:intergenic | 25.0% |
| ! | GAAGAAATACATGTAGTTAA+AGG | + | tig0030427:33391-33410 | Msa1443350:intron | 25.0% |
| !!! | AATCCATTTCTAAAATCACT+TGG | + | tig0030427:33684-33703 | Msa1443350:intron | 25.0% |
| !!! | ATCCATTTCTAAAATCACTT+GGG | + | tig0030427:33685-33704 | Msa1443350:intron | 25.0% |
| ! | AAACAAATTAAGCATTAGCA+AGG | - | tig0030427:34215-34234 | None:intergenic | 25.0% |
| !! | TCTTTTACAATTGTGCTTAT+TGG | + | tig0030427:34249-34268 | Msa1443350:intron | 25.0% |
| !! | AACAAGATACAAAACTTGTT+AGG | - | tig0030427:34424-34443 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGTATCTTGTTTA+AGG | + | tig0030427:34426-34445 | Msa1443350:intron | 25.0% |
| ! | TGAATGAAAACTTTGTGTTA+GGG | - | tig0030427:34568-34587 | None:intergenic | 25.0% |
| ! | ATGAATGAAAACTTTGTGTT+AGG | - | tig0030427:34569-34588 | None:intergenic | 25.0% |
| !! | ACAAAGTTTTCATTCATGAA+AGG | + | tig0030427:34572-34591 | Msa1443350:CDS | 25.0% |
| !! | TTAAGTTGTTAGTATCTTCA+TGG | - | tig0030427:34713-34732 | None:intergenic | 25.0% |
| ! | ATGAGTGGAATAATATCTAA+CGG | - | tig0030427:34929-34948 | None:intergenic | 25.0% |
| ! | GATAAAAAAGTTTAGATGAG+TGG | - | tig0030427:34944-34963 | None:intergenic | 25.0% |
| !!! | TTCTCTCTAATTTATTTTGC+AGG | + | tig0030427:35150-35169 | Msa1443350:intron | 25.0% |
| !!! | CATCATTTTTCCTCATAAAA+AGG | + | tig0030427:35327-35346 | Msa1443350:intron | 25.0% |
| ! | AGAAAGGGATACAAATATAT+AGG | - | tig0030427:35423-35442 | None:intergenic | 25.0% |
| ! | CTTACTTGATGTATTAAGAA+AGG | - | tig0030427:35439-35458 | None:intergenic | 25.0% |
| ! | ATAGAATAATACCTTTACCA+TGG | - | tig0030427:35511-35530 | None:intergenic | 25.0% |
| ! | GAATATCATGTATCAACAAA+TGG | - | tig0030427:35618-35637 | None:intergenic | 25.0% |
| !! | AGTTTTTATCAAAATTGTGG+TGG | - | tig0030427:35760-35779 | None:intergenic | 25.0% |
| !! | ATTGGTAACTAAATTACAAG+TGG | - | tig0030427:35805-35824 | None:intergenic | 25.0% |
| ! | AGTGATATACACATTTCATT+AGG | - | tig0030427:35835-35854 | None:intergenic | 25.0% |
| !! | AAAATTTTGTCAGATGATGA+TGG | + | tig0030427:35880-35899 | Msa1443350:CDS | 25.0% |
| CCCATACATCTTTCAATTTA+TGG | + | tig0030427:31767-31786 | Msa1443350:intron | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | - | tig0030427:31771-31790 | None:intergenic | 30.0% | |
| !! | CCAGTTCAAAATTCAAGTTT+TGG | - | tig0030427:32192-32211 | None:intergenic | 30.0% |
| ! | CCAAAACTTGAATTTTGAAC+TGG | + | tig0030427:32189-32208 | Msa1443350:intron | 30.0% |
| ! | AAACTTGAATTTTGAACTGG+GGG | + | tig0030427:32192-32211 | Msa1443350:intron | 30.0% |
| ! | GGGGACTAAAATGATATTTT+TGG | + | tig0030427:32212-32231 | Msa1443350:intron | 30.0% |
| TTATCATAGCCTATAGTCAA+TGG | + | tig0030427:32513-32532 | Msa1443350:intron | 30.0% | |
| GTTTGTTCGAATTTATCACT+TGG | - | tig0030427:32664-32683 | None:intergenic | 30.0% | |
| CCCATACATCTTTCAATTTA+TGG | + | tig0030427:31767-31786 | Msa1443350:intron | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | - | tig0030427:31771-31790 | None:intergenic | 30.0% | |
| !! | TAACTAGCTTTGGATAACTA+TGG | + | tig0030427:33300-33319 | Msa1443350:intron | 30.0% |
| GACAATGAATATGAGGAAAA+AGG | + | tig0030427:33433-33452 | Msa1443350:intron | 30.0% | |
| !! | AACCCAAGTGATTTTAGAAA+TGG | - | tig0030427:33690-33709 | None:intergenic | 30.0% |
| GTTACAATCTTGTTAGTACT+TGG | + | tig0030427:33755-33774 | Msa1443350:intron | 30.0% | |
| GAATTGTGAAAGTAAAAGGT+TGG | - | tig0030427:34085-34104 | None:intergenic | 30.0% | |
| GTTGGAATTGTGAAAGTAAA+AGG | - | tig0030427:34089-34108 | None:intergenic | 30.0% | |
| GAGGGAAAGTTAAAACTAAA+TGG | + | tig0030427:34129-34148 | Msa1443350:intron | 30.0% | |
| TAATTTACCACTATCCTTCA+AGG | + | tig0030427:34768-34787 | Msa1443350:intron | 30.0% | |
| TATCCTTCAAGGAAATTTGT+TGG | + | tig0030427:34779-34798 | Msa1443350:intron | 30.0% | |
| ! | ATCCTTCAAGGAAATTTGTT+GGG | + | tig0030427:34780-34799 | Msa1443350:intron | 30.0% |
| ! | TCAAATGTTGCCTTTTTATG+AGG | - | tig0030427:35340-35359 | None:intergenic | 30.0% |
| TGTTAGCTGCATATAAGAAA+AGG | - | tig0030427:35398-35417 | None:intergenic | 30.0% | |
| GCAAGTCTTAAATCTTCAAA+TGG | - | tig0030427:35468-35487 | None:intergenic | 30.0% | |
| TGTTGATACATGATATTCAC+AGG | + | tig0030427:35620-35639 | Msa1443350:intron | 30.0% | |
| ATATTCACAGGTTAAGACTA+AGG | + | tig0030427:35632-35651 | Msa1443350:intron | 30.0% | |
| TGAAATGTGTATATCACTAC+AGG | + | tig0030427:35837-35856 | Msa1443350:intron | 30.0% | |
| !! | ATCATAAGCTTTAAAAGACG+AGG | - | tig0030427:35997-36016 | None:intergenic | 30.0% |
| TTTGTGAGACTTGTATAACA+CGG | - | tig0030427:36021-36040 | None:intergenic | 30.0% | |
| ACAAGTCTCACAAAAAATGT+AGG | + | tig0030427:36027-36046 | Msa1443350:CDS | 30.0% | |
| CAAGTCTCACAAAAAATGTA+GGG | + | tig0030427:36028-36047 | Msa1443350:CDS | 30.0% | |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | - | tig0030427:31725-31744 | None:intergenic | 35.0% |
| TGTGTCAACTTGTATAGGAT+TGG | - | tig0030427:31835-31854 | None:intergenic | 35.0% | |
| TAGTGTGTGTCAACTTGTAT+AGG | - | tig0030427:31840-31859 | None:intergenic | 35.0% | |
| ! | AACTTGAATTTTGAACTGGG+GGG | + | tig0030427:32193-32212 | Msa1443350:intron | 35.0% |
| GAAATTCGAGCAATTAGCAT+TGG | - | tig0030427:32456-32475 | None:intergenic | 35.0% | |
| GACTATAGGCTATGATAACA+AGG | - | tig0030427:32511-32530 | None:intergenic | 35.0% | |
| TAAGTGAGAAAATGATGAGC+GGG | - | tig0030427:32597-32616 | None:intergenic | 35.0% | |
| GTAAGTGAGAAAATGATGAG+CGG | - | tig0030427:32598-32617 | None:intergenic | 35.0% | |
| ATACAACATCTTGTTGCCAA+TGG | - | tig0030427:32782-32801 | None:intergenic | 35.0% | |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | - | tig0030427:31725-31744 | None:intergenic | 35.0% |
| TAGTGTGTGTGAACTTGTAT+GGG | - | tig0030427:32958-32977 | None:intergenic | 35.0% | |
| ATAGTGTGTGTGAACTTGTA+TGG | - | tig0030427:32959-32978 | None:intergenic | 35.0% | |
| AGAGTGTGACAATGAATATG+AGG | + | tig0030427:33426-33445 | Msa1443350:intron | 35.0% | |
| ATTTCATCCATGTAGTCATC+TGG | + | tig0030427:33534-33553 | Msa1443350:intron | 35.0% | |
| ACTTAAACCAGATGACTACA+TGG | - | tig0030427:33544-33563 | None:intergenic | 35.0% | |
| ATGTGATCGACAATGTGAAT+TGG | + | tig0030427:33578-33597 | Msa1443350:intron | 35.0% | |
| TGTGATCGACAATGTGAATT+GGG | + | tig0030427:33579-33598 | Msa1443350:intron | 35.0% | |
| CCAATTGAAGTCCACAATAA+CGG | - | tig0030427:33874-33893 | None:intergenic | 35.0% | |
| ! | CAATACAAAGTCACTTTGGT+TGG | - | tig0030427:34107-34126 | None:intergenic | 35.0% |
| TCGTCAATACAAAGTCACTT+TGG | - | tig0030427:34111-34130 | None:intergenic | 35.0% | |
| ! | AAAGTGACTTTGTATTGACG+AGG | + | tig0030427:34110-34129 | Msa1443350:intron | 35.0% |
| ! | AAGTGACTTTGTATTGACGA+GGG | + | tig0030427:34111-34130 | Msa1443350:intron | 35.0% |
| ! | CATGATTTTGTTACAGTGTG+TGG | + | tig0030427:34535-34554 | Msa1443350:intron | 35.0% |
| TGAAAACTTTGTGTTAGGGT+GGG | - | tig0030427:34564-34583 | None:intergenic | 35.0% | |
| ATGAAAACTTTGTGTTAGGG+TGG | - | tig0030427:34565-34584 | None:intergenic | 35.0% | |
| CAAATTTCCTTGAAGGATAG+TGG | - | tig0030427:34778-34797 | None:intergenic | 35.0% | |
| ATCCCAACAAATTTCCTTGA+AGG | - | tig0030427:34785-34804 | None:intergenic | 35.0% | |
| !! | CTCAAACTACACATTGACTT+GGG | + | tig0030427:34847-34866 | Msa1443350:intron | 35.0% |
| GTGGAATAATATCTAACGGA+GGG | - | tig0030427:34925-34944 | None:intergenic | 35.0% | |
| AGTGGAATAATATCTAACGG+AGG | - | tig0030427:34926-34945 | None:intergenic | 35.0% | |
| GGATATACCAACTACAAAGT+AGG | + | tig0030427:35087-35106 | Msa1443350:intron | 35.0% | |
| ATCAAAATTGTGGTGGTTCA+TGG | - | tig0030427:35753-35772 | None:intergenic | 35.0% | |
| !! | TTTGTCAGATGATGATGGTT+TGG | + | tig0030427:35885-35904 | Msa1443350:CDS | 35.0% |
| GTACAACATCTTGTTGCCAA+TGG | - | tig0030427:31671-31690 | None:intergenic | 40.0% | |
| !! | AGAGCATTTTCTCGTAGATC+GGG | - | tig0030427:31724-31743 | None:intergenic | 40.0% |
| AGATGTATGGGTACAAACCT+TGG | - | tig0030427:31758-31777 | None:intergenic | 40.0% | |
| TCGCAACAATACGTGAAACT+GGG | + | tig0030427:32164-32183 | Msa1443350:intron | 40.0% | |
| ! | TGGGACTATCCATTGACTAT+AGG | - | tig0030427:32525-32544 | None:intergenic | 40.0% |
| !! | AGAGCATTTTCTCGTAGATC+GGG | - | tig0030427:31724-31743 | None:intergenic | 40.0% |
| TGCTCTTCATTTGCTCTCTA+AGG | + | tig0030427:32849-32868 | Msa1443350:CDS | 40.0% | |
| TGTGTGAACTTGTATGGGAT+TGG | - | tig0030427:32953-32972 | None:intergenic | 40.0% | |
| CCGTTATTGTGGACTTCAAT+TGG | + | tig0030427:33871-33890 | Msa1443350:CDS | 40.0% | |
| TTCACTTCATGGTAAGTGCA+AGG | - | tig0030427:34278-34297 | None:intergenic | 40.0% | |
| !! | AGATTTTCTGGTGAAAGAGC+AGG | - | tig0030427:34337-34356 | None:intergenic | 40.0% |
| ! | TGTGCAGCAGTAAGATTTTC+TGG | - | tig0030427:34349-34368 | None:intergenic | 40.0% |
| CAATACTCTTGCTCTACTTC+AGG | + | tig0030427:34384-34403 | Msa1443350:CDS | 40.0% | |
| GGGTTAGAAACCAAACAAAC+AGG | + | tig0030427:34824-34843 | Msa1443350:intron | 40.0% | |
| GTAGTTTGAGCCTGTTTGTT+TGG | - | tig0030427:34837-34856 | None:intergenic | 40.0% | |
| ! | GCTCAAACTACACATTGACT+TGG | + | tig0030427:34846-34865 | Msa1443350:intron | 40.0% |
| GAATAATATCTAACGGAGGG+AGG | - | tig0030427:34922-34941 | None:intergenic | 40.0% | |
| CCTAAGACCTACTTTGTAGT+TGG | - | tig0030427:35097-35116 | None:intergenic | 40.0% | |
| CCAACTACAAAGTAGGTCTT+AGG | + | tig0030427:35094-35113 | Msa1443350:intron | 40.0% | |
| ! | GATTTAAGACTTGCCAGTCT+TGG | + | tig0030427:35474-35493 | Msa1443350:CDS | 40.0% |
| GTTAAGACTAAGGAAGCGAT+AGG | + | tig0030427:35642-35661 | Msa1443350:intron | 40.0% | |
| TGCCTACGCAATATGGAAAT+TGG | + | tig0030427:35696-35715 | Msa1443350:intron | 40.0% | |
| TGCCAATTTCCATATTGCGT+AGG | - | tig0030427:35701-35720 | None:intergenic | 40.0% | |
| CCAACTGCAAAAAAACGATC+TGG | - | tig0030427:35928-35947 | None:intergenic | 40.0% | |
| !!! | CCAGATCGTTTTTTTGCAGT+TGG | + | tig0030427:35925-35944 | Msa1443350:CDS | 40.0% |
| !! | AGCTTTAAAAGACGAGGTGA+AGG | - | tig0030427:35991-36010 | None:intergenic | 40.0% |
| TCTTCAAGGAGGGTGATTGA+GGG | - | tig0030427:31612-31631 | None:intergenic | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | - | tig0030427:31613-31632 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | - | tig0030427:31723-31742 | None:intergenic | 45.0% |
| TGCTCTTCATTTGCTCTCCA+AGG | + | tig0030427:31738-31757 | Msa1443350:CDS | 45.0% | |
| AGTCTCGTAACATGGTGCAT+CGG | - | tig0030427:31900-31919 | None:intergenic | 45.0% | |
| GTCGCAACAATACGTGAAAC+TGG | + | tig0030427:32163-32182 | Msa1443350:intron | 45.0% | |
| CGCAACAATACGTGAAACTG+GGG | + | tig0030427:32165-32184 | Msa1443350:intron | 45.0% | |
| TAGTCAATGGATAGTCCCAC+TGG | + | tig0030427:32526-32545 | Msa1443350:intron | 45.0% | |
| TCTTCAAGGAGGGTGATTGA+GGG | - | tig0030427:31612-31631 | None:intergenic | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | - | tig0030427:31613-31632 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | - | tig0030427:31723-31742 | None:intergenic | 45.0% |
| AGTCTCGTAACATGGTGCAT+CGG | - | tig0030427:31900-31919 | None:intergenic | 45.0% | |
| AAGAACTCGCACCGTTATTG+TGG | + | tig0030427:33860-33879 | Msa1443350:CDS | 45.0% | |
| AGTCATTGCTGCCATGGTAA+AGG | + | tig0030427:35497-35516 | Msa1443350:CDS | 45.0% | |
| GCATTACTTCAGTTGCGAGA+AGG | - | tig0030427:35671-35690 | None:intergenic | 45.0% | |
| TCCATATTGCGTAGGCACAA+CGG | - | tig0030427:35693-35712 | None:intergenic | 45.0% | |
| ! | TTTTGCAGTTGGTCGAGCTT+TGG | + | tig0030427:35936-35955 | Msa1443350:CDS | 45.0% |
| !! | TAAGATGGTGGAGTTGGGTT+CGG | - | tig0030427:36063-36082 | None:intergenic | 45.0% |
| !!! | TTTTCATAATTATAATTTTA+TGG | - | tig0030427:32314-32333 | None:intergenic | 5.0% |
| !! | AAAATTATAATATTTATGTA+TGG | - | tig0030427:34455-34474 | None:intergenic | 5.0% |
| TTCAAGGAGGGTGATTGAGG+GGG | - | tig0030427:31610-31629 | None:intergenic | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | - | tig0030427:31611-31630 | None:intergenic | 50.0% | |
| CATCTTGTTGCCAATGGTGC+TGG | - | tig0030427:31665-31684 | None:intergenic | 50.0% | |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | - | tig0030427:31908-31927 | None:intergenic | 50.0% |
| ! | CACGTGTTTTGCATGCCAGT+GGG | - | tig0030427:32544-32563 | None:intergenic | 50.0% |
| ! | ACACGTGTTTTGCATGCCAG+TGG | - | tig0030427:32545-32564 | None:intergenic | 50.0% |
| CTGGCATGCAAAACACGTGT+TGG | + | tig0030427:32545-32564 | Msa1443350:intron | 50.0% | |
| AAATGATGAGCGGGCAAGTG+TGG | - | tig0030427:32588-32607 | None:intergenic | 50.0% | |
| TTCAAGGAGGGTGATTGAGG+GGG | - | tig0030427:31610-31629 | None:intergenic | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | - | tig0030427:31611-31630 | None:intergenic | 50.0% | |
| CATCTTGTTGCCAATGGTGC+TGG | - | tig0030427:31665-31684 | None:intergenic | 50.0% | |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | - | tig0030427:31908-31927 | None:intergenic | 50.0% |
| TCTTGGAGTCATTGCTGCCA+TGG | + | tig0030427:35491-35510 | Msa1443350:CDS | 50.0% | |
| !! | TCGAGCTTTGGACAGGATGT+TGG | + | tig0030427:35948-35967 | Msa1443350:CDS | 50.0% |
| TCAAGGAGGGTGATTGAGGG+GGG | - | tig0030427:31609-31628 | None:intergenic | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | - | tig0030427:31649-31668 | None:intergenic | 55.0% | |
| ACATCTGCCTCCAGCACCAT+TGG | + | tig0030427:31652-31671 | Msa1443350:CDS | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | - | tig0030427:31662-31681 | None:intergenic | 55.0% |
| AGCGGGCAAGTGTGGCAATA+TGG | - | tig0030427:32580-32599 | None:intergenic | 55.0% | |
| GGGGGGAAATTCGCCATTGA+TGG | - | tig0030427:32703-32722 | None:intergenic | 55.0% | |
| TCAAGGAGGGTGATTGAGGG+GGG | - | tig0030427:31609-31628 | None:intergenic | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | - | tig0030427:31649-31668 | None:intergenic | 55.0% | |
| ACATCTGCCTCCAGCACCAT+TGG | + | tig0030427:31652-31671 | Msa1443350:CDS | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | - | tig0030427:31662-31681 | None:intergenic | 55.0% |
| GGCAGCAATGACTCCAAGAC+TGG | - | tig0030427:35490-35509 | None:intergenic | 55.0% | |
| GCCGTTGTGCCTACGCAATA+TGG | + | tig0030427:35689-35708 | Msa1443350:intron | 55.0% | |
| !! | CAGTTGGTCGAGCTTTGGAC+AGG | + | tig0030427:35941-35960 | Msa1443350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030427 | gene | 31595 | 36083 | 31595 | ID=Msa1443350;Name=Msa1443350 |
| tig0030427 | mRNA | 31595 | 36083 | 31595 | ID=Msa1443350-mRNA-1;Parent=Msa1443350;Name=Msa1443350-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.66|0.71|7|0|269 |
| tig0030427 | exon | 31595 | 31759 | 31595 | ID=Msa1443350-mRNA-1:exon:13855;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 32742 | 32870 | 32742 | ID=Msa1443350-mRNA-1:exon:13856;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 33844 | 33915 | 33844 | ID=Msa1443350-mRNA-1:exon:13857;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 34316 | 34405 | 34316 | ID=Msa1443350-mRNA-1:exon:13858;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 34551 | 34593 | 34551 | ID=Msa1443350-mRNA-1:exon:13859;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 35412 | 35518 | 35412 | ID=Msa1443350-mRNA-1:exon:13860;Parent=Msa1443350-mRNA-1 |
| tig0030427 | exon | 35880 | 36083 | 35880 | ID=Msa1443350-mRNA-1:exon:13861;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 31595 | 31759 | 31595 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 32742 | 32870 | 32742 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 33844 | 33915 | 33844 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 34316 | 34405 | 34316 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 34551 | 34593 | 34551 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 35412 | 35518 | 35412 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| tig0030427 | CDS | 35880 | 36083 | 35880 | ID=Msa1443350-mRNA-1:cds;Parent=Msa1443350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
