Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162800 | XP_013467848.1 | 91.133 | 406 | 12 | 1 | 1 | 382 | 1 | 406 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162800 | sp|Q9SF15|PUB24_ARATH | 38.514 | 444 | 201 | 8 | 2 | 379 | 6 | 443 | 2.59e-99 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162800 | A0A072VUZ2 | 91.133 | 406 | 12 | 1 | 1 | 382 | 1 | 406 | 0.0 | 750 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162800 | Msa1349860 | 0.801467 | 8.879743e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162800 | MtrunA17_Chr1g0177301 | 91.133 | 406 | 12 | 1 | 1 | 382 | 1 | 406 | 0.0 | 750 |
| Msa0162800 | MtrunA17_Chr4g0025501 | 42.222 | 405 | 201 | 7 | 1 | 374 | 1 | 403 | 5.20e-98 | 297 |
| Msa0162800 | MtrunA17_Chr7g0267501 | 40.385 | 416 | 209 | 7 | 2 | 381 | 4 | 416 | 1.80e-96 | 294 |
| Msa0162800 | MtrunA17_Chr1g0177281 | 39.578 | 427 | 200 | 8 | 3 | 375 | 4 | 426 | 2.28e-95 | 291 |
| Msa0162800 | MtrunA17_Chr1g0177261 | 39.344 | 427 | 201 | 8 | 3 | 375 | 4 | 426 | 2.98e-94 | 288 |
| Msa0162800 | MtrunA17_Chr2g0322021 | 41.832 | 404 | 197 | 9 | 1 | 375 | 1 | 395 | 5.12e-90 | 276 |
| Msa0162800 | MtrunA17_Chr1g0177271 | 39.110 | 427 | 202 | 8 | 3 | 375 | 4 | 426 | 9.55e-86 | 266 |
| Msa0162800 | MtrunA17_Chr5g0434171 | 30.288 | 416 | 237 | 14 | 3 | 379 | 32 | 433 | 1.45e-49 | 172 |
| Msa0162800 | MtrunA17_Chr3g0110121 | 30.051 | 396 | 233 | 11 | 1 | 362 | 31 | 416 | 2.88e-42 | 153 |
| Msa0162800 | MtrunA17_Chr6g0479261 | 29.851 | 402 | 231 | 12 | 3 | 362 | 22 | 414 | 4.48e-38 | 142 |
| Msa0162800 | MtrunA17_Chr5g0420471 | 29.353 | 402 | 233 | 12 | 3 | 362 | 22 | 414 | 1.46e-37 | 140 |
| Msa0162800 | MtrunA17_Chr4g0044631 | 30.303 | 396 | 231 | 15 | 4 | 368 | 12 | 393 | 3.34e-33 | 128 |
| Msa0162800 | MtrunA17_Chr3g0129811 | 25.250 | 400 | 255 | 13 | 4 | 366 | 81 | 473 | 6.45e-23 | 100 |
| Msa0162800 | MtrunA17_Chr8g0384041 | 26.238 | 404 | 248 | 13 | 4 | 366 | 8 | 402 | 1.41e-22 | 98.6 |
| Msa0162800 | MtrunA17_Chr5g0400971 | 27.649 | 387 | 234 | 14 | 5 | 365 | 66 | 432 | 3.54e-21 | 94.7 |
| Msa0162800 | MtrunA17_Chr4g0031431 | 27.083 | 336 | 196 | 11 | 6 | 329 | 255 | 553 | 2.74e-18 | 86.7 |
| Msa0162800 | MtrunA17_Chr7g0248251 | 36.496 | 137 | 78 | 5 | 6 | 136 | 274 | 407 | 4.69e-18 | 85.9 |
| Msa0162800 | MtrunA17_Chr3g0122721 | 48.837 | 86 | 36 | 3 | 7 | 92 | 281 | 358 | 1.52e-17 | 84.7 |
| Msa0162800 | MtrunA17_Chr1g0152291 | 39.310 | 145 | 66 | 6 | 1 | 136 | 39 | 170 | 3.49e-17 | 82.8 |
| Msa0162800 | MtrunA17_Chr4g0044411 | 49.351 | 77 | 37 | 2 | 2 | 78 | 269 | 343 | 4.46e-17 | 83.2 |
| Msa0162800 | MtrunA17_Chr7g0237931 | 36.424 | 151 | 84 | 5 | 6 | 146 | 237 | 385 | 1.68e-16 | 81.3 |
| Msa0162800 | MtrunA17_Chr4g0048811 | 52.174 | 69 | 32 | 1 | 6 | 74 | 5 | 72 | 2.26e-16 | 79.3 |
| Msa0162800 | MtrunA17_Chr1g0199321 | 36.620 | 142 | 78 | 4 | 6 | 137 | 247 | 386 | 2.58e-16 | 80.5 |
| Msa0162800 | MtrunA17_Chr2g0284461 | 34.211 | 152 | 78 | 6 | 4 | 137 | 290 | 437 | 4.02e-16 | 80.1 |
| Msa0162800 | MtrunA17_Chr4g0059201 | 52.055 | 73 | 33 | 2 | 7 | 79 | 320 | 390 | 6.30e-16 | 79.7 |
| Msa0162800 | MtrunA17_Chr8g0377151 | 45.349 | 86 | 39 | 3 | 7 | 92 | 283 | 360 | 1.98e-15 | 78.2 |
| Msa0162800 | MtrunA17_Chr5g0437411 | 29.245 | 212 | 106 | 7 | 1 | 186 | 288 | 481 | 2.07e-15 | 77.8 |
| Msa0162800 | MtrunA17_Chr1g0196911 | 50.000 | 76 | 37 | 1 | 7 | 82 | 507 | 581 | 2.72e-15 | 77.8 |
| Msa0162800 | MtrunA17_Chr4g0013091 | 48.000 | 75 | 37 | 2 | 3 | 77 | 310 | 382 | 4.32e-15 | 77.0 |
| Msa0162800 | MtrunA17_Chr5g0413681 | 54.286 | 70 | 30 | 2 | 10 | 79 | 284 | 351 | 4.56e-15 | 77.0 |
| Msa0162800 | MtrunA17_Chr7g0261371 | 45.333 | 75 | 39 | 2 | 4 | 78 | 239 | 311 | 2.57e-14 | 74.7 |
| Msa0162800 | MtrunA17_Chr3g0117851 | 29.183 | 257 | 122 | 11 | 7 | 211 | 276 | 524 | 3.13e-14 | 74.3 |
| Msa0162800 | MtrunA17_Chr7g0275081 | 36.054 | 147 | 73 | 6 | 2 | 136 | 74 | 211 | 3.81e-14 | 73.6 |
| Msa0162800 | MtrunA17_Chr2g0280671 | 30.000 | 240 | 148 | 9 | 8 | 242 | 17 | 241 | 5.15e-14 | 72.8 |
| Msa0162800 | MtrunA17_Chr8g0390311 | 45.946 | 74 | 39 | 1 | 7 | 80 | 396 | 468 | 3.21e-13 | 71.6 |
| Msa0162800 | MtrunA17_Chr1g0183781 | 44.444 | 72 | 38 | 2 | 4 | 75 | 239 | 308 | 3.75e-13 | 70.9 |
| Msa0162800 | MtrunA17_Chr7g0234671 | 47.059 | 68 | 34 | 2 | 7 | 74 | 79 | 144 | 1.52e-12 | 68.6 |
| Msa0162800 | MtrunA17_Chr3g0106931 | 42.667 | 75 | 41 | 2 | 4 | 78 | 231 | 303 | 4.09e-12 | 67.8 |
| Msa0162800 | MtrunA17_Chr5g0404311 | 40.909 | 88 | 46 | 4 | 2 | 89 | 269 | 350 | 6.06e-12 | 67.4 |
| Msa0162800 | MtrunA17_Chr3g0144071 | 27.222 | 180 | 109 | 5 | 10 | 185 | 34 | 195 | 1.38e-11 | 66.2 |
| Msa0162800 | MtrunA17_Chr8g0373031 | 42.169 | 83 | 42 | 3 | 7 | 89 | 276 | 352 | 2.50e-11 | 65.5 |
| Msa0162800 | MtrunA17_Chr7g0275961 | 33.577 | 137 | 74 | 6 | 4 | 138 | 253 | 374 | 5.65e-11 | 64.3 |
| Msa0162800 | MtrunA17_Chr2g0328101 | 45.205 | 73 | 38 | 2 | 2 | 74 | 736 | 806 | 6.52e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162800 | AT3G11840.1 | 38.514 | 444 | 201 | 8 | 2 | 379 | 6 | 443 | 2.63e-100 | 305 |
| Msa0162800 | AT2G35930.1 | 40.000 | 410 | 207 | 9 | 2 | 381 | 8 | 408 | 1.23e-90 | 279 |
| Msa0162800 | AT3G52450.1 | 36.156 | 437 | 215 | 12 | 1 | 380 | 1 | 430 | 7.75e-79 | 249 |
| Msa0162800 | AT3G19380.1 | 31.662 | 379 | 215 | 12 | 4 | 348 | 12 | 380 | 1.47e-39 | 145 |
| Msa0162800 | AT1G66160.1 | 28.608 | 395 | 239 | 10 | 3 | 369 | 30 | 409 | 5.02e-35 | 134 |
| Msa0162800 | AT1G49780.1 | 29.630 | 405 | 235 | 13 | 4 | 370 | 12 | 404 | 2.17e-34 | 132 |
| Msa0162800 | AT5G37490.1 | 27.053 | 414 | 216 | 15 | 3 | 362 | 28 | 409 | 1.12e-33 | 130 |
| Msa0162800 | AT3G18710.1 | 29.293 | 396 | 231 | 14 | 4 | 362 | 10 | 393 | 3.87e-28 | 114 |
| Msa0162800 | AT1G66160.2 | 26.329 | 395 | 232 | 11 | 3 | 369 | 30 | 393 | 1.43e-24 | 104 |
| Msa0162800 | AT5G64660.1 | 26.341 | 410 | 240 | 16 | 4 | 365 | 8 | 403 | 2.29e-21 | 95.5 |
| Msa0162800 | AT5G09800.1 | 24.874 | 398 | 247 | 14 | 6 | 366 | 11 | 393 | 6.76e-21 | 94.0 |
| Msa0162800 | AT3G49810.1 | 26.598 | 391 | 235 | 13 | 1 | 362 | 59 | 426 | 7.58e-18 | 85.1 |
| Msa0162800 | AT5G65920.1 | 25.831 | 391 | 248 | 12 | 5 | 371 | 59 | 431 | 2.82e-17 | 83.6 |
| Msa0162800 | AT5G65920.2 | 25.831 | 391 | 248 | 12 | 5 | 371 | 59 | 431 | 2.82e-17 | 83.6 |
| Msa0162800 | AT3G54850.1 | 51.351 | 74 | 34 | 2 | 6 | 79 | 248 | 319 | 3.34e-17 | 84.0 |
| Msa0162800 | AT1G67530.3 | 49.412 | 85 | 37 | 3 | 7 | 91 | 273 | 351 | 5.12e-17 | 83.2 |
| Msa0162800 | AT1G67530.2 | 49.412 | 85 | 37 | 3 | 7 | 91 | 273 | 351 | 6.41e-17 | 83.2 |
| Msa0162800 | AT1G67530.1 | 49.412 | 85 | 37 | 3 | 7 | 91 | 273 | 351 | 6.41e-17 | 83.2 |
| Msa0162800 | AT1G67530.4 | 49.412 | 85 | 37 | 3 | 7 | 91 | 273 | 351 | 6.41e-17 | 83.2 |
| Msa0162800 | AT3G46510.1 | 47.126 | 87 | 38 | 3 | 6 | 92 | 256 | 334 | 7.24e-17 | 82.8 |
| Msa0162800 | AT1G71020.2 | 48.684 | 76 | 37 | 2 | 2 | 77 | 91 | 164 | 1.25e-16 | 81.6 |
| Msa0162800 | AT1G29340.1 | 36.000 | 150 | 77 | 6 | 4 | 137 | 303 | 449 | 1.56e-16 | 82.0 |
| Msa0162800 | AT1G71020.1 | 48.052 | 77 | 38 | 2 | 2 | 78 | 239 | 313 | 1.88e-16 | 81.6 |
| Msa0162800 | AT1G23030.1 | 48.684 | 76 | 37 | 2 | 2 | 77 | 237 | 310 | 2.21e-16 | 81.3 |
| Msa0162800 | AT1G24330.1 | 50.588 | 85 | 36 | 4 | 7 | 91 | 276 | 354 | 5.20e-16 | 80.5 |
| Msa0162800 | AT1G24330.2 | 50.588 | 85 | 36 | 4 | 7 | 91 | 276 | 354 | 5.20e-16 | 80.5 |
| Msa0162800 | AT5G42340.1 | 26.236 | 263 | 178 | 7 | 6 | 265 | 290 | 539 | 2.08e-15 | 78.2 |
| Msa0162800 | AT4G21350.1 | 33.333 | 150 | 93 | 3 | 5 | 150 | 4 | 150 | 5.01e-15 | 76.3 |
| Msa0162800 | AT3G07360.1 | 43.038 | 79 | 43 | 2 | 1 | 79 | 69 | 145 | 1.09e-14 | 75.9 |
| Msa0162800 | AT2G28830.1 | 45.349 | 86 | 39 | 3 | 7 | 92 | 185 | 262 | 1.19e-14 | 75.9 |
| Msa0162800 | AT5G01830.1 | 32.051 | 156 | 96 | 5 | 1 | 148 | 269 | 422 | 3.76e-14 | 74.3 |
| Msa0162800 | AT1G27910.1 | 49.315 | 73 | 35 | 2 | 7 | 79 | 280 | 350 | 6.42e-14 | 73.9 |
| Msa0162800 | AT1G01660.2 | 43.836 | 73 | 39 | 2 | 7 | 79 | 499 | 569 | 8.82e-14 | 73.2 |
| Msa0162800 | AT1G01660.1 | 43.836 | 73 | 39 | 2 | 7 | 79 | 498 | 568 | 9.21e-14 | 73.2 |
| Msa0162800 | AT2G45920.1 | 45.455 | 77 | 40 | 2 | 5 | 81 | 324 | 398 | 1.86e-13 | 71.6 |
| Msa0162800 | AT3G54790.2 | 44.000 | 75 | 40 | 2 | 4 | 78 | 200 | 272 | 2.56e-12 | 68.9 |
| Msa0162800 | AT3G54790.3 | 44.000 | 75 | 40 | 2 | 4 | 78 | 236 | 308 | 3.45e-12 | 68.6 |
| Msa0162800 | AT3G54790.1 | 44.000 | 75 | 40 | 2 | 4 | 78 | 236 | 308 | 3.45e-12 | 68.6 |
| Msa0162800 | AT5G65500.2 | 42.500 | 80 | 42 | 3 | 2 | 80 | 719 | 795 | 4.56e-12 | 68.2 |
| Msa0162800 | AT5G65500.1 | 42.500 | 80 | 42 | 3 | 2 | 80 | 711 | 787 | 4.58e-12 | 68.2 |
| Msa0162800 | AT3G61390.4 | 47.143 | 70 | 35 | 2 | 5 | 74 | 277 | 344 | 4.59e-12 | 67.4 |
| Msa0162800 | AT3G61390.2 | 47.143 | 70 | 35 | 2 | 5 | 74 | 352 | 419 | 6.16e-12 | 67.0 |
| Msa0162800 | AT5G57035.1 | 42.466 | 73 | 40 | 2 | 6 | 78 | 708 | 778 | 7.54e-12 | 67.4 |
| Msa0162800 | AT1G60190.1 | 32.867 | 143 | 80 | 6 | 12 | 142 | 284 | 422 | 1.31e-11 | 66.6 |
| Msa0162800 | AT1G01680.1 | 43.478 | 69 | 37 | 2 | 10 | 78 | 237 | 303 | 2.53e-11 | 64.7 |
| Msa0162800 | AT5G51270.2 | 43.056 | 72 | 38 | 2 | 7 | 78 | 736 | 804 | 3.60e-11 | 65.5 |
| Msa0162800 | AT5G51270.1 | 43.056 | 72 | 38 | 2 | 7 | 78 | 736 | 804 | 3.60e-11 | 65.5 |
| Msa0162800 | AT1G20780.1 | 27.869 | 183 | 108 | 7 | 8 | 185 | 25 | 188 | 5.12e-11 | 64.7 |
| Msa0162800 | AT1G20780.2 | 27.869 | 183 | 108 | 7 | 8 | 185 | 25 | 188 | 5.12e-11 | 64.7 |
| Msa0162800 | AT1G20780.3 | 27.869 | 183 | 108 | 7 | 8 | 185 | 25 | 188 | 5.12e-11 | 64.7 |
Find 42 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACAGGATCTTTCATTATT+TGG | 0.118442 | 1_4:+40287030 | None:intergenic |
| TTCATTATTTGGAGTGATAT+TGG | 0.189499 | 1_4:+40287041 | None:intergenic |
| CACAATTCTTTCGAAGAATT+CGG | 0.199521 | 1_4:+40286395 | None:intergenic |
| ACTAATAGAGATTGAATTAA+TGG | 0.226085 | 1_4:-40286150 | Msa0162800:CDS |
| TGATTCCTTTGAGAAGCTTT+TGG | 0.238517 | 1_4:+40286784 | None:intergenic |
| TAAAGTGATGGAAATATTTA+AGG | 0.243590 | 1_4:-40285841 | Msa0162800:CDS |
| TTCTGCTACAAAGATGGTTT+TGG | 0.311443 | 1_4:-40285940 | Msa0162800:CDS |
| ATTTGAAAATAATCAAATAC+TGG | 0.314035 | 1_4:-40286541 | Msa0162800:CDS |
| TCATTATTTGGAGTGATATT+GGG | 0.316730 | 1_4:+40287042 | None:intergenic |
| ATTCCTGTTATAGCAGTAAC+AGG | 0.346346 | 1_4:+40287014 | None:intergenic |
| TTAAGGCTCATTCTGAGGTT+TGG | 0.366681 | 1_4:-40285824 | Msa0162800:CDS |
| GATCCTGTTACTGCTATAAC+AGG | 0.386049 | 1_4:-40287017 | Msa0162800:CDS |
| GTTGACTGAGAGATTCTTCA+AGG | 0.402733 | 1_4:-40286018 | Msa0162800:CDS |
| CATTTATGTTCTTGTGCAAA+TGG | 0.411329 | 1_4:-40286080 | Msa0162800:CDS |
| TTGGATGAGATGTTAAAAGT+TGG | 0.415505 | 1_4:-40285921 | Msa0162800:CDS |
| GGTGTTAAATCAGAATCTAA+TGG | 0.418840 | 1_4:+40286912 | None:intergenic |
| TCTCAAGAGTTTAATGCAGT+TGG | 0.418910 | 1_4:-40286745 | Msa0162800:CDS |
| ATTGTGAAAGTTCTAAGAAA+TGG | 0.433892 | 1_4:-40286378 | Msa0162800:CDS |
| ACAATTCTTTCGAAGAATTC+GGG | 0.437523 | 1_4:+40286396 | None:intergenic |
| ATGAACATAATCATCTCTTT+CGG | 0.450958 | 1_4:+40286666 | None:intergenic |
| TTCGTCGTTTGATTCAATCT+TGG | 0.454949 | 1_4:-40286878 | Msa0162800:CDS |
| AGAATCACAGAACTCACATT+TGG | 0.479777 | 1_4:-40286113 | Msa0162800:CDS |
| GAAGGTATTGAAGAAGCTCT+TGG | 0.482882 | 1_4:-40286612 | Msa0162800:CDS |
| AAACTCTTGAGATGAACCTT+AGG | 0.486218 | 1_4:+40286756 | None:intergenic |
| CAAAGGAATCAAAGATCCTA+AGG | 0.507179 | 1_4:-40286772 | Msa0162800:CDS |
| AGAGATGTTTGAGGAAAACA+AGG | 0.510086 | 1_4:+40285792 | None:intergenic |
| AGATTCTTCACTTCTTCTGT+AGG | 0.513088 | 1_4:+40286567 | None:intergenic |
| AAACGACGAAGTGTGTGATT+TGG | 0.523610 | 1_4:+40286891 | None:intergenic |
| GGAAGAGGTTGTTGTGTGAC+AGG | 0.532069 | 1_4:+40286933 | None:intergenic |
| TGCACACAAAATGCTTCACT+TGG | 0.539364 | 1_4:-40286855 | Msa0162800:CDS |
| AATATTTAAGGCTCATTCTG+AGG | 0.547702 | 1_4:-40285829 | Msa0162800:CDS |
| AAATCAGAATCTAATGGAAG+AGG | 0.553606 | 1_4:+40286918 | None:intergenic |
| CTTCAAGGTTTCAATGACAG+TGG | 0.556204 | 1_4:-40286003 | Msa0162800:CDS |
| AAATACTGGATTCTTTAACA+TGG | 0.565062 | 1_4:-40286527 | Msa0162800:CDS |
| CTAGCATAGAGAGATGTTTG+AGG | 0.570126 | 1_4:+40285783 | None:intergenic |
| CTCAAACATCTCTCTATGCT+AGG | 0.570560 | 1_4:-40285782 | Msa0162800:CDS |
| ATCGAGACAGCATTGAACAT+TGG | 0.589905 | 1_4:-40286983 | Msa0162800:CDS |
| CAAGTCCAAAAGCTTCTCAA+AGG | 0.606638 | 1_4:-40286789 | Msa0162800:CDS |
| ATTGGGCAAATGAAGTATTG+TGG | 0.626661 | 1_4:+40287059 | None:intergenic |
| GTATTTGAAAGATAAAGTGA+TGG | 0.642403 | 1_4:-40285853 | Msa0162800:CDS |
| AATGGTGTAATAACGCAACA+AGG | 0.660881 | 1_4:-40286360 | Msa0162800:intron |
| GGTTACTGTGAAATCGCATG+CGG | 0.706124 | 1_4:-40286478 | Msa0162800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAATAATCAAATAC+TGG | - | chr1_4:40286315-40286334 | Msa0162800:intron | 15.0% |
| !! | ATTTGAAAATAATCAAATAC+TGG | - | chr1_4:40286315-40286334 | Msa0162800:intron | 15.0% |
| !! | ATAGTTGATTGTTACAAAAA+AGG | - | chr1_4:40286211-40286230 | Msa0162800:intron | 20.0% |
| !! | ACTAATAGAGATTGAATTAA+TGG | - | chr1_4:40286706-40286725 | Msa0162800:CDS | 20.0% |
| !!! | TAAAGTGATGGAAATATTTA+AGG | - | chr1_4:40287015-40287034 | Msa0162800:CDS | 20.0% |
| !! | ATAGTTGATTGTTACAAAAA+AGG | - | chr1_4:40286211-40286230 | Msa0162800:intron | 20.0% |
| !! | ACTAATAGAGATTGAATTAA+TGG | - | chr1_4:40286706-40286725 | Msa0162800:CDS | 20.0% |
| !!! | TAAAGTGATGGAAATATTTA+AGG | - | chr1_4:40287015-40287034 | Msa0162800:CDS | 20.0% |
| !! | TCATTATTTGGAGTGATATT+GGG | + | chr1_4:40285817-40285836 | None:intergenic | 25.0% |
| !! | TTCATTATTTGGAGTGATAT+TGG | + | chr1_4:40285818-40285837 | None:intergenic | 25.0% |
| ! | TAACAGGATCTTTCATTATT+TGG | + | chr1_4:40285829-40285848 | None:intergenic | 25.0% |
| !! | AGAAAGATTTTGTTGGAAAA+TGG | - | chr1_4:40286163-40286182 | Msa0162800:CDS | 25.0% |
| ! | ATGAACATAATCATCTCTTT+CGG | + | chr1_4:40286193-40286212 | None:intergenic | 25.0% |
| ! | AAAAAAGGCGAAATTTATGA+AGG | - | chr1_4:40286226-40286245 | Msa0162800:intron | 25.0% |
| ! | AAATACTGGATTCTTTAACA+TGG | - | chr1_4:40286329-40286348 | Msa0162800:intron | 25.0% |
| !!! | ATTGTGAAAGTTCTAAGAAA+TGG | - | chr1_4:40286478-40286497 | Msa0162800:CDS | 25.0% |
| !! | TAAATTTTCTGCTACAAAGA+TGG | - | chr1_4:40286910-40286929 | Msa0162800:CDS | 25.0% |
| ! | GTATTTGAAAGATAAAGTGA+TGG | - | chr1_4:40287003-40287022 | Msa0162800:CDS | 25.0% |
| !! | TCATTATTTGGAGTGATATT+GGG | + | chr1_4:40285817-40285836 | None:intergenic | 25.0% |
| !! | TTCATTATTTGGAGTGATAT+TGG | + | chr1_4:40285818-40285837 | None:intergenic | 25.0% |
| ! | TAACAGGATCTTTCATTATT+TGG | + | chr1_4:40285829-40285848 | None:intergenic | 25.0% |
| !! | AGAAAGATTTTGTTGGAAAA+TGG | - | chr1_4:40286163-40286182 | Msa0162800:CDS | 25.0% |
| ! | ATGAACATAATCATCTCTTT+CGG | + | chr1_4:40286193-40286212 | None:intergenic | 25.0% |
| ! | AAAAAAGGCGAAATTTATGA+AGG | - | chr1_4:40286226-40286245 | Msa0162800:intron | 25.0% |
| ! | AAATACTGGATTCTTTAACA+TGG | - | chr1_4:40286329-40286348 | Msa0162800:intron | 25.0% |
| !!! | ATTGTGAAAGTTCTAAGAAA+TGG | - | chr1_4:40286478-40286497 | Msa0162800:CDS | 25.0% |
| !! | TAAATTTTCTGCTACAAAGA+TGG | - | chr1_4:40286910-40286929 | Msa0162800:CDS | 25.0% |
| ! | GTATTTGAAAGATAAAGTGA+TGG | - | chr1_4:40287003-40287022 | Msa0162800:CDS | 25.0% |
| AAATCAGAATCTAATGGAAG+AGG | + | chr1_4:40285941-40285960 | None:intergenic | 30.0% | |
| GGTGTTAAATCAGAATCTAA+TGG | + | chr1_4:40285947-40285966 | None:intergenic | 30.0% | |
| ! | GAGCAATAGAAAGATTTTGT+TGG | - | chr1_4:40286156-40286175 | Msa0162800:CDS | 30.0% |
| ACAATTCTTTCGAAGAATTC+GGG | + | chr1_4:40286463-40286482 | None:intergenic | 30.0% | |
| CACAATTCTTTCGAAGAATT+CGG | + | chr1_4:40286464-40286483 | None:intergenic | 30.0% | |
| TTTACTATGTTGTTGTCCTT+TGG | - | chr1_4:40286640-40286659 | Msa0162800:CDS | 30.0% | |
| TTACTATGTTGTTGTCCTTT+GGG | - | chr1_4:40286641-40286660 | Msa0162800:CDS | 30.0% | |
| ! | ATTAACCTATTTCTTCCCAA+AGG | + | chr1_4:40286659-40286678 | None:intergenic | 30.0% |
| CATTTATGTTCTTGTGCAAA+TGG | - | chr1_4:40286776-40286795 | Msa0162800:CDS | 30.0% | |
| !!! | TTTCAGTTTTTGAGTCATCA+AGG | - | chr1_4:40286803-40286822 | Msa0162800:CDS | 30.0% |
| TTGGATGAGATGTTAAAAGT+TGG | - | chr1_4:40286935-40286954 | Msa0162800:CDS | 30.0% | |
| ! | AATATTTAAGGCTCATTCTG+AGG | - | chr1_4:40287027-40287046 | Msa0162800:CDS | 30.0% |
| AAATCAGAATCTAATGGAAG+AGG | + | chr1_4:40285941-40285960 | None:intergenic | 30.0% | |
| GGTGTTAAATCAGAATCTAA+TGG | + | chr1_4:40285947-40285966 | None:intergenic | 30.0% | |
| ! | GAGCAATAGAAAGATTTTGT+TGG | - | chr1_4:40286156-40286175 | Msa0162800:CDS | 30.0% |
| ACAATTCTTTCGAAGAATTC+GGG | + | chr1_4:40286463-40286482 | None:intergenic | 30.0% | |
| CACAATTCTTTCGAAGAATT+CGG | + | chr1_4:40286464-40286483 | None:intergenic | 30.0% | |
| TTTACTATGTTGTTGTCCTT+TGG | - | chr1_4:40286640-40286659 | Msa0162800:CDS | 30.0% | |
| TTACTATGTTGTTGTCCTTT+GGG | - | chr1_4:40286641-40286660 | Msa0162800:CDS | 30.0% | |
| ! | ATTAACCTATTTCTTCCCAA+AGG | + | chr1_4:40286659-40286678 | None:intergenic | 30.0% |
| CATTTATGTTCTTGTGCAAA+TGG | - | chr1_4:40286776-40286795 | Msa0162800:CDS | 30.0% | |
| !!! | TTTCAGTTTTTGAGTCATCA+AGG | - | chr1_4:40286803-40286822 | Msa0162800:CDS | 30.0% |
| TTGGATGAGATGTTAAAAGT+TGG | - | chr1_4:40286935-40286954 | Msa0162800:CDS | 30.0% | |
| ! | AATATTTAAGGCTCATTCTG+AGG | - | chr1_4:40287027-40287046 | Msa0162800:CDS | 30.0% |
| !! | ATTGGGCAAATGAAGTATTG+TGG | + | chr1_4:40285800-40285819 | None:intergenic | 35.0% |
| ATTCCTGTTATAGCAGTAAC+AGG | + | chr1_4:40285845-40285864 | None:intergenic | 35.0% | |
| TTCGTCGTTTGATTCAATCT+TGG | - | chr1_4:40285978-40285997 | Msa0162800:CDS | 35.0% | |
| ! | ATTTTTGTGAGTGGTGGTTT+TGG | + | chr1_4:40286046-40286065 | None:intergenic | 35.0% |
| ! | ACTTGAATTTTTGTGAGTGG+TGG | + | chr1_4:40286052-40286071 | None:intergenic | 35.0% |
| ! | TGGACTTGAATTTTTGTGAG+TGG | + | chr1_4:40286055-40286074 | None:intergenic | 35.0% |
| !! | TGATTCCTTTGAGAAGCTTT+TGG | + | chr1_4:40286075-40286094 | None:intergenic | 35.0% |
| CAAAGGAATCAAAGATCCTA+AGG | - | chr1_4:40286084-40286103 | Msa0162800:CDS | 35.0% | |
| AAACTCTTGAGATGAACCTT+AGG | + | chr1_4:40286103-40286122 | None:intergenic | 35.0% | |
| TCTCAAGAGTTTAATGCAGT+TGG | - | chr1_4:40286111-40286130 | Msa0162800:CDS | 35.0% | |
| AGATTCTTCACTTCTTCTGT+AGG | + | chr1_4:40286292-40286311 | None:intergenic | 35.0% | |
| AGTTTCCGAGATGAAAAACT+CGG | - | chr1_4:40286357-40286376 | Msa0162800:intron | 35.0% | |
| ! | AGTAACCGAGTTTTTCATCT+CGG | + | chr1_4:40286365-40286384 | None:intergenic | 35.0% |
| AATGGTGTAATAACGCAACA+AGG | - | chr1_4:40286496-40286515 | Msa0162800:CDS | 35.0% | |
| GGGAAGAAATAGGTTAATGA+TGG | - | chr1_4:40286661-40286680 | Msa0162800:CDS | 35.0% | |
| AGAATCACAGAACTCACATT+TGG | - | chr1_4:40286743-40286762 | Msa0162800:CDS | 35.0% | |
| ! | TTCTGCTACAAAGATGGTTT+TGG | - | chr1_4:40286916-40286935 | Msa0162800:CDS | 35.0% |
| AGAGATGTTTGAGGAAAACA+AGG | + | chr1_4:40287067-40287086 | None:intergenic | 35.0% | |
| !! | ATTGGGCAAATGAAGTATTG+TGG | + | chr1_4:40285800-40285819 | None:intergenic | 35.0% |
| ATTCCTGTTATAGCAGTAAC+AGG | + | chr1_4:40285845-40285864 | None:intergenic | 35.0% | |
| TTCGTCGTTTGATTCAATCT+TGG | - | chr1_4:40285978-40285997 | Msa0162800:CDS | 35.0% | |
| ! | ATTTTTGTGAGTGGTGGTTT+TGG | + | chr1_4:40286046-40286065 | None:intergenic | 35.0% |
| ! | ACTTGAATTTTTGTGAGTGG+TGG | + | chr1_4:40286052-40286071 | None:intergenic | 35.0% |
| ! | TGGACTTGAATTTTTGTGAG+TGG | + | chr1_4:40286055-40286074 | None:intergenic | 35.0% |
| !! | TGATTCCTTTGAGAAGCTTT+TGG | + | chr1_4:40286075-40286094 | None:intergenic | 35.0% |
| CAAAGGAATCAAAGATCCTA+AGG | - | chr1_4:40286084-40286103 | Msa0162800:CDS | 35.0% | |
| AAACTCTTGAGATGAACCTT+AGG | + | chr1_4:40286103-40286122 | None:intergenic | 35.0% | |
| TCTCAAGAGTTTAATGCAGT+TGG | - | chr1_4:40286111-40286130 | Msa0162800:CDS | 35.0% | |
| AGATTCTTCACTTCTTCTGT+AGG | + | chr1_4:40286292-40286311 | None:intergenic | 35.0% | |
| AGTTTCCGAGATGAAAAACT+CGG | - | chr1_4:40286357-40286376 | Msa0162800:intron | 35.0% | |
| ! | AGTAACCGAGTTTTTCATCT+CGG | + | chr1_4:40286365-40286384 | None:intergenic | 35.0% |
| AATGGTGTAATAACGCAACA+AGG | - | chr1_4:40286496-40286515 | Msa0162800:CDS | 35.0% | |
| GGGAAGAAATAGGTTAATGA+TGG | - | chr1_4:40286661-40286680 | Msa0162800:CDS | 35.0% | |
| AGAATCACAGAACTCACATT+TGG | - | chr1_4:40286743-40286762 | Msa0162800:CDS | 35.0% | |
| ! | TTCTGCTACAAAGATGGTTT+TGG | - | chr1_4:40286916-40286935 | Msa0162800:CDS | 35.0% |
| AGAGATGTTTGAGGAAAACA+AGG | + | chr1_4:40287067-40287086 | None:intergenic | 35.0% | |
| GATCCTGTTACTGCTATAAC+AGG | - | chr1_4:40285839-40285858 | Msa0162800:CDS | 40.0% | |
| ! | ATCGAGACAGCATTGAACAT+TGG | - | chr1_4:40285873-40285892 | Msa0162800:CDS | 40.0% |
| AAACGACGAAGTGTGTGATT+TGG | + | chr1_4:40285968-40285987 | None:intergenic | 40.0% | |
| TGCACACAAAATGCTTCACT+TGG | - | chr1_4:40286001-40286020 | Msa0162800:CDS | 40.0% | |
| CAAGTCCAAAAGCTTCTCAA+AGG | - | chr1_4:40286067-40286086 | Msa0162800:CDS | 40.0% | |
| !! | GAAGGTATTGAAGAAGCTCT+TGG | - | chr1_4:40286244-40286263 | Msa0162800:intron | 40.0% |
| !!! | GCGATTCAATCGTTTTAGAG+AGG | - | chr1_4:40286431-40286450 | Msa0162800:CDS | 40.0% |
| ! | GTTGTCCTTTGGGAAGAAAT+AGG | - | chr1_4:40286651-40286670 | Msa0162800:CDS | 40.0% |
| AGGTTAATGATGGTTGAAGC+TGG | - | chr1_4:40286671-40286690 | Msa0162800:CDS | 40.0% | |
| GTTGACTGAGAGATTCTTCA+AGG | - | chr1_4:40286838-40286857 | Msa0162800:CDS | 40.0% | |
| CTTCAAGGTTTCAATGACAG+TGG | - | chr1_4:40286853-40286872 | Msa0162800:CDS | 40.0% | |
| !! | TTAAGGCTCATTCTGAGGTT+TGG | - | chr1_4:40287032-40287051 | Msa0162800:CDS | 40.0% |
| CTAGCATAGAGAGATGTTTG+AGG | + | chr1_4:40287076-40287095 | None:intergenic | 40.0% | |
| CTCAAACATCTCTCTATGCT+AGG | - | chr1_4:40287074-40287093 | Msa0162800:CDS | 40.0% | |
| GATCCTGTTACTGCTATAAC+AGG | - | chr1_4:40285839-40285858 | Msa0162800:CDS | 40.0% | |
| ! | ATCGAGACAGCATTGAACAT+TGG | - | chr1_4:40285873-40285892 | Msa0162800:CDS | 40.0% |
| AAACGACGAAGTGTGTGATT+TGG | + | chr1_4:40285968-40285987 | None:intergenic | 40.0% | |
| TGCACACAAAATGCTTCACT+TGG | - | chr1_4:40286001-40286020 | Msa0162800:CDS | 40.0% | |
| CAAGTCCAAAAGCTTCTCAA+AGG | - | chr1_4:40286067-40286086 | Msa0162800:CDS | 40.0% | |
| !! | GAAGGTATTGAAGAAGCTCT+TGG | - | chr1_4:40286244-40286263 | Msa0162800:intron | 40.0% |
| !!! | GCGATTCAATCGTTTTAGAG+AGG | - | chr1_4:40286431-40286450 | Msa0162800:CDS | 40.0% |
| ! | GTTGTCCTTTGGGAAGAAAT+AGG | - | chr1_4:40286651-40286670 | Msa0162800:CDS | 40.0% |
| AGGTTAATGATGGTTGAAGC+TGG | - | chr1_4:40286671-40286690 | Msa0162800:CDS | 40.0% | |
| GTTGACTGAGAGATTCTTCA+AGG | - | chr1_4:40286838-40286857 | Msa0162800:CDS | 40.0% | |
| CTTCAAGGTTTCAATGACAG+TGG | - | chr1_4:40286853-40286872 | Msa0162800:CDS | 40.0% | |
| !! | TTAAGGCTCATTCTGAGGTT+TGG | - | chr1_4:40287032-40287051 | Msa0162800:CDS | 40.0% |
| CTAGCATAGAGAGATGTTTG+AGG | + | chr1_4:40287076-40287095 | None:intergenic | 40.0% | |
| CTCAAACATCTCTCTATGCT+AGG | - | chr1_4:40287074-40287093 | Msa0162800:CDS | 40.0% | |
| !!! | TGAGTGGTGGTTTTGGTGTT+GGG | + | chr1_4:40286039-40286058 | None:intergenic | 45.0% |
| GGTTACTGTGAAATCGCATG+CGG | - | chr1_4:40286378-40286397 | Msa0162800:CDS | 45.0% | |
| !!! | TGAGTGGTGGTTTTGGTGTT+GGG | + | chr1_4:40286039-40286058 | None:intergenic | 45.0% |
| GGTTACTGTGAAATCGCATG+CGG | - | chr1_4:40286378-40286397 | Msa0162800:CDS | 45.0% | |
| GGAAGAGGTTGTTGTGTGAC+AGG | + | chr1_4:40285926-40285945 | None:intergenic | 50.0% | |
| !!! | GTGAGTGGTGGTTTTGGTGT+TGG | + | chr1_4:40286040-40286059 | None:intergenic | 50.0% |
| GGAAGAGGTTGTTGTGTGAC+AGG | + | chr1_4:40285926-40285945 | None:intergenic | 50.0% | |
| !!! | GTGAGTGGTGGTTTTGGTGT+TGG | + | chr1_4:40286040-40286059 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 40285779 | 40287099 | 40285779 | ID=Msa0162800;Name=Msa0162800 |
| chr1_4 | mRNA | 40285779 | 40287099 | 40285779 | ID=Msa0162800-mRNA-1;Parent=Msa0162800;Name=Msa0162800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|382 |
| chr1_4 | exon | 40286361 | 40287099 | 40286361 | ID=Msa0162800-mRNA-1:exon:11660;Parent=Msa0162800-mRNA-1 |
| chr1_4 | exon | 40285779 | 40286188 | 40285779 | ID=Msa0162800-mRNA-1:exon:11659;Parent=Msa0162800-mRNA-1 |
| chr1_4 | CDS | 40286361 | 40287099 | 40286361 | ID=Msa0162800-mRNA-1:cds;Parent=Msa0162800-mRNA-1 |
| chr1_4 | CDS | 40285779 | 40286188 | 40285779 | ID=Msa0162800-mRNA-1:cds;Parent=Msa0162800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
