Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1349860 | XP_003630914.1 | 94.647 | 467 | 14 | 5 | 1 | 460 | 1 | 463 | 0.0 | 827 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1349860 | sp|Q9ZU93|PUX2_ARATH | 61.684 | 475 | 146 | 7 | 1 | 457 | 1 | 457 | 0.0 | 550 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1349860 | G7LAI2 | 94.647 | 467 | 14 | 5 | 1 | 460 | 1 | 463 | 0.0 | 827 |
Gene ID | Type | Classification |
---|---|---|
Msa1349860 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012710 | Msa1349860 | 0.807720 | 4.403183e-50 | -8.615850e-47 |
Msa0119440 | Msa1349860 | 0.810381 | 1.185658e-50 | -8.615850e-47 |
Msa0631320 | Msa1349860 | 0.803595 | 3.234922e-49 | -8.615850e-47 |
Msa0649100 | Msa1349860 | 0.810386 | 1.182693e-50 | -8.615850e-47 |
Msa0659790 | Msa1349860 | 0.814212 | 1.728381e-51 | -8.615850e-47 |
Msa0769720 | Msa1349860 | 0.800573 | 1.353021e-48 | -8.615850e-47 |
Msa0162800 | Msa1349860 | 0.801467 | 8.879743e-49 | -8.615850e-47 |
Msa0171980 | Msa1349860 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
Msa0187310 | Msa1349860 | 0.810753 | 9.853614e-51 | -8.615850e-47 |
Msa0189610 | Msa1349860 | 0.825600 | 4.289929e-54 | -8.615850e-47 |
Msa0229360 | Msa1349860 | 0.802405 | 5.698451e-49 | -8.615850e-47 |
Msa1285200 | Msa1349860 | 0.819762 | 9.794392e-53 | -8.615850e-47 |
Msa0382400 | Msa1349860 | 0.824122 | 9.577579e-54 | -8.615850e-47 |
Msa0274100 | Msa1349860 | 0.806394 | 8.404422e-50 | -8.615850e-47 |
Msa0319290 | Msa1349860 | 0.828779 | 7.434959e-55 | -8.615850e-47 |
Msa1156820 | Msa1349860 | 0.815100 | 1.098809e-51 | -8.615850e-47 |
Msa1220880 | Msa1349860 | 0.805434 | 1.337425e-49 | -8.615850e-47 |
Msa0582280 | Msa1349860 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
Msa0930940 | Msa1349860 | 0.877164 | 7.826754e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1349860 | MtrunA17_Chr8g0391471 | 94.647 | 467 | 14 | 5 | 1 | 460 | 1 | 463 | 0.0 | 827 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1349860 | AT2G01650.2 | 61.684 | 475 | 146 | 7 | 1 | 457 | 1 | 457 | 0.0 | 550 |
Msa1349860 | AT2G01650.1 | 61.684 | 475 | 146 | 7 | 1 | 457 | 1 | 457 | 0.0 | 550 |
Msa1349860 | AT2G01650.3 | 59.649 | 399 | 125 | 7 | 1 | 381 | 1 | 381 | 1.32e-153 | 441 |
Find 118 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTATATCCCCACCATTTA+AGG | 0.138844 | tig0011086:+18219 | None:intergenic |
TCTATTGGTACTTATGTTTC+AGG | 0.140987 | tig0011086:-20264 | Msa1349860:CDS |
GTAGGTTTGGGTTTGGGATT+AGG | 0.175605 | tig0011086:+20561 | None:intergenic |
CGAAAGGGTTGTTTACAAAT+TGG | 0.223879 | tig0011086:+20405 | None:intergenic |
CCCACAGCTTCTTTAATCTT+TGG | 0.237677 | tig0011086:+20141 | None:intergenic |
TTGTTCTTCATAGTCGAAAA+TGG | 0.244653 | tig0011086:-20763 | Msa1349860:exon |
CTAGGGGCTTGAACTTGATT+AGG | 0.247442 | tig0011086:+18383 | None:intergenic |
GGTGTTAAAGTTTCTCTCTT+TGG | 0.252715 | tig0011086:+19958 | None:intergenic |
TAGGTTTGGGTTTGGGATTA+GGG | 0.259606 | tig0011086:+20562 | None:intergenic |
GATACACAAGAACTATTATT+AGG | 0.271026 | tig0011086:-18827 | Msa1349860:CDS |
TGAGAAGAGAAGCTGAATTA+AGG | 0.273073 | tig0011086:-18926 | Msa1349860:CDS |
GGTGGAGTAGGTTTGGGTTT+GGG | 0.283318 | tig0011086:+20555 | None:intergenic |
GTCTTCTTCCTCTATCGTTT+TGG | 0.294303 | tig0011086:+18420 | None:intergenic |
ATCAGTGAACCACTTGTAAA+TGG | 0.308403 | tig0011086:-18313 | Msa1349860:CDS |
GAAGCTGTGGGCGAGGTTAT+TGG | 0.314917 | tig0011086:-20129 | Msa1349860:CDS |
ACTGAATTGGAGATTTCTAT+TGG | 0.324761 | tig0011086:-20279 | Msa1349860:CDS |
TGCTTTAAAAGAATCATGTT+TGG | 0.332951 | tig0011086:-18515 | Msa1349860:CDS |
AAACAACAGAATCTGTTTCT+AGG | 0.337000 | tig0011086:+18365 | None:intergenic |
CGGTGGAGTAGGTTTGGGTT+TGG | 0.338165 | tig0011086:+20554 | None:intergenic |
TTCCTAAACTTAACATTCTC+AGG | 0.339946 | tig0011086:+20180 | None:intergenic |
GTTGAATTGCTGAGTTTGTT+AGG | 0.350477 | tig0011086:-20102 | Msa1349860:CDS |
CGGAGAGACATGGGCATTCA+TGG | 0.352162 | tig0011086:-20058 | Msa1349860:CDS |
TTCTGAGTCTAATACTGAAT+TGG | 0.356720 | tig0011086:-20292 | Msa1349860:CDS |
TTCAGCTGAACGTTTGTAGA+AGG | 0.363666 | tig0011086:+18953 | None:intergenic |
TCTTCTCAAAGATCTCAAAA+TGG | 0.368840 | tig0011086:-20453 | Msa1349860:CDS |
AGCGATCGGTGGAGTAGGTT+TGG | 0.369595 | tig0011086:+20548 | None:intergenic |
ATGTTAAGTTTAGGAAGATT+AGG | 0.375559 | tig0011086:-20173 | Msa1349860:CDS |
CAAGAAAGCAATTGTGTTGT+TGG | 0.381393 | tig0011086:-20004 | Msa1349860:CDS |
GCGATCGGTGGAGTAGGTTT+GGG | 0.384107 | tig0011086:+20549 | None:intergenic |
TAGGGGCTTGAACTTGATTA+GGG | 0.388598 | tig0011086:+18384 | None:intergenic |
GGGGTAGGAATGGAATTTGC+AGG | 0.422062 | tig0011086:+20606 | None:intergenic |
TCAGATGGAGTTGTACTTCA+AGG | 0.423651 | tig0011086:-18795 | Msa1349860:CDS |
AACCTGAGAATGTTAAGTTT+AGG | 0.430889 | tig0011086:-20182 | Msa1349860:CDS |
AAAGGCCAAGGTCGAGTCTT+GGG | 0.431284 | tig0011086:-20657 | Msa1349860:CDS |
ATTGTTGAGGAATATTGTTA+AGG | 0.431444 | tig0011086:-20205 | Msa1349860:CDS |
AACAACAGAATCTGTTTCTA+GGG | 0.439799 | tig0011086:+18366 | None:intergenic |
TCATGAATGTAGGTAGGAAT+TGG | 0.442163 | tig0011086:+18099 | None:intergenic |
GAACGTTTGTAGAAGGAATC+TGG | 0.447302 | tig0011086:+18960 | None:intergenic |
TCTATATCCCCACCATTTAA+GGG | 0.448956 | tig0011086:+18220 | None:intergenic |
CTATTGGTACTTATGTTTCA+GGG | 0.450380 | tig0011086:-20263 | Msa1349860:CDS |
AAAGAGAATAGTGAAAAGTA+AGG | 0.457100 | tig0011086:+18249 | None:intergenic |
TGTGTTGTTGGAACCACAAT+TGG | 0.459857 | tig0011086:-19992 | Msa1349860:CDS |
GGCTACTTTCTCAGCGGAAA+TGG | 0.460122 | tig0011086:+19933 | None:intergenic |
ATCCCATGTTTCCCAAAAGC+AGG | 0.471596 | tig0011086:-18451 | Msa1349860:CDS |
TCTGAGAAGGACGAGGGGTA+GGG | 0.472504 | tig0011086:+20586 | None:intergenic |
TCTTCTTCTGGTAAATTCAA+AGG | 0.474590 | tig0011086:-20675 | Msa1349860:CDS |
CAAAGGCCAAGGTCGAGTCT+TGG | 0.475772 | tig0011086:-20658 | Msa1349860:CDS |
TTCTGAGAAGGACGAGGGGT+AGG | 0.483289 | tig0011086:+20585 | None:intergenic |
CTGAGAAGGACGAGGGGTAG+GGG | 0.483771 | tig0011086:+20587 | None:intergenic |
GTTAGGATTTGAACTTAAAG+AGG | 0.484850 | tig0011086:-20085 | Msa1349860:CDS |
AACCTCGTCCTCGGATCGAA+AGG | 0.485306 | tig0011086:+20389 | None:intergenic |
ACCAACTACTGCTCTGTATG+AGG | 0.485891 | tig0011086:-18754 | Msa1349860:intron |
TTCAAGGTGTATTTGCTCCA+TGG | 0.496010 | tig0011086:-18779 | Msa1349860:CDS |
TAAGTTTAGGAAGATTAGGA+TGG | 0.496165 | tig0011086:-20169 | Msa1349860:CDS |
CAAAATTATGAATGAAAATG+AGG | 0.497430 | tig0011086:+18186 | None:intergenic |
ACCCTTTCGATCCGAGGACG+AGG | 0.506482 | tig0011086:-20391 | Msa1349860:CDS |
CTACAAACGTTCAGCTGAAG+AGG | 0.515065 | tig0011086:-18949 | Msa1349860:CDS |
TCAAGGTGTATTTGCTCCAT+GGG | 0.515302 | tig0011086:-18778 | Msa1349860:CDS |
GAAGTGACGAATGAATCAAA+TGG | 0.527530 | tig0011086:+20474 | None:intergenic |
ACCTCGTCCTCGGATCGAAA+GGG | 0.530145 | tig0011086:+20390 | None:intergenic |
GTGTTCAGAAACCTCGTCCT+CGG | 0.530401 | tig0011086:+20380 | None:intergenic |
GTGGGGATATAGACACAATT+CGG | 0.531118 | tig0011086:-18210 | Msa1349860:three_prime_UTR |
ATATTGTTCTTAAATTGTTG+AGG | 0.534264 | tig0011086:-20218 | Msa1349860:CDS |
AAGAGGAGAACGGAGAGACA+TGG | 0.535036 | tig0011086:-20068 | Msa1349860:CDS |
AAGCCATCTGCGGGTTTGCG+TGG | 0.535106 | tig0011086:+20501 | None:intergenic |
TTGCTTTGATCTGAAGCGAT+CGG | 0.538206 | tig0011086:+20534 | None:intergenic |
CTTTGATCTGAAGCGATCGG+TGG | 0.538600 | tig0011086:+20537 | None:intergenic |
AGAGCAGTAGTTGGTTCCCA+TGG | 0.544179 | tig0011086:+18762 | None:intergenic |
ACACGCCGTTGAACAACTAC+AGG | 0.546054 | tig0011086:+18475 | None:intergenic |
TCTGGTAAATTCAAAGGCCA+AGG | 0.550240 | tig0011086:-20669 | Msa1349860:CDS |
GAAGGACGAGGGGTAGGGGT+AGG | 0.552141 | tig0011086:+20591 | None:intergenic |
TGATTAGGGCAGAAGGCACC+AGG | 0.553360 | tig0011086:+18398 | None:intergenic |
TCCAAAGATTAAAGAAGCTG+TGG | 0.555466 | tig0011086:-20142 | Msa1349860:CDS |
GATTAAAGAAGCTGTGGGCG+AGG | 0.555589 | tig0011086:-20136 | Msa1349860:CDS |
ACGAGGGGTAGGGGTAGGAA+TGG | 0.557142 | tig0011086:+20596 | None:intergenic |
AAATTAACTTTCTCCTCGGT+AGG | 0.559081 | tig0011086:+20030 | None:intergenic |
TTGGGATTAGGGTTCTGAGA+AGG | 0.565323 | tig0011086:+20573 | None:intergenic |
AAGTTTAGGAAGATTAGGAT+GGG | 0.568581 | tig0011086:-20168 | Msa1349860:CDS |
ATATATTGCCTCATGAATGT+AGG | 0.569788 | tig0011086:+18089 | None:intergenic |
GGAGTATCTTGAACCAATTG+TGG | 0.569841 | tig0011086:+19979 | None:intergenic |
AATGGATCAAAGCCATCTGC+GGG | 0.571592 | tig0011086:+20492 | None:intergenic |
AATGCTTAACCATTTACAAG+TGG | 0.577084 | tig0011086:+18304 | None:intergenic |
TCTGAAGCGATCGGTGGAGT+AGG | 0.577813 | tig0011086:+20543 | None:intergenic |
GATCAAATTAACTTTCTCCT+CGG | 0.582104 | tig0011086:+20026 | None:intergenic |
TTGAACTTGATTAGGGCAGA+AGG | 0.585290 | tig0011086:+18391 | None:intergenic |
TAAACAACCCTTTCGATCCG+AGG | 0.585535 | tig0011086:-20397 | Msa1349860:CDS |
GATGTAAAAGACAAGATGAA+AGG | 0.585648 | tig0011086:-20738 | Msa1349860:CDS |
GTTTCAGGGAATCCGTCTGA+AGG | 0.588125 | tig0011086:-20249 | Msa1349860:CDS |
AAGAACCCAAGACTCGACCT+TGG | 0.590087 | tig0011086:+20652 | None:intergenic |
ACCTCATACAGAGCAGTAGT+TGG | 0.594344 | tig0011086:+18753 | None:intergenic |
CGGAATAGATGAAATAGAGA+GGG | 0.594503 | tig0011086:+20860 | None:intergenic |
TTTGAACTTAAAGAGGAGAA+CGG | 0.595229 | tig0011086:-20078 | Msa1349860:CDS |
TGCATCCTGTAGTTGTTCAA+CGG | 0.598631 | tig0011086:-18480 | Msa1349860:CDS |
AGAGGAGAACGGAGAGACAT+GGG | 0.598709 | tig0011086:-20067 | Msa1349860:CDS |
TTAGGGTTCTGAGAAGGACG+AGG | 0.599978 | tig0011086:+20579 | None:intergenic |
AACGATAGAGGAAGAAGACC+TGG | 0.600898 | tig0011086:-18416 | Msa1349860:CDS |
AAATGGATCAAAGCCATCTG+CGG | 0.612029 | tig0011086:+20491 | None:intergenic |
AAACCACGCAAACCCGCAGA+TGG | 0.614242 | tig0011086:-20504 | Msa1349860:CDS |
TCCCATGTTTCCCAAAAGCA+GGG | 0.615985 | tig0011086:-18450 | Msa1349860:CDS |
ACTTTCTCAGCGGAAATGGT+AGG | 0.622064 | tig0011086:+19937 | None:intergenic |
CTATATCCCCACCATTTAAG+GGG | 0.622105 | tig0011086:+18221 | None:intergenic |
CCAAAGATTAAAGAAGCTGT+GGG | 0.630530 | tig0011086:-20141 | Msa1349860:CDS |
ACAACAGAATCTGTTTCTAG+GGG | 0.631709 | tig0011086:+18367 | None:intergenic |
ATTGCCTCATGAATGTAGGT+AGG | 0.633785 | tig0011086:+18093 | None:intergenic |
TAGGGTTCTGAGAAGGACGA+GGG | 0.637909 | tig0011086:+20580 | None:intergenic |
TTCCGCTGAGAAAGTAGCCG+AGG | 0.648892 | tig0011086:-19929 | Msa1349860:CDS |
ACGGAATAGATGAAATAGAG+AGG | 0.650951 | tig0011086:+20859 | None:intergenic |
GGATAAGAAACAAACACGCA+CGG | 0.657948 | tig0011086:+20840 | None:intergenic |
GCTGTGGGCGAGGTTATTGG+TGG | 0.660528 | tig0011086:-20126 | Msa1349860:CDS |
GAATAGATGAAATAGAGAGG+GGG | 0.668449 | tig0011086:+20862 | None:intergenic |
AATTCCTACCTACATTCATG+AGG | 0.671047 | tig0011086:-18097 | Msa1349860:three_prime_UTR |
ATATCAACAGAACCTTCAGA+CGG | 0.678273 | tig0011086:+20237 | None:intergenic |
ATTCATGGAGGTTCCTACCG+AGG | 0.688667 | tig0011086:-20043 | Msa1349860:CDS |
GGACGAGGTTTCTGAACACG+TGG | 0.689204 | tig0011086:-20376 | Msa1349860:CDS |
GGAATAGATGAAATAGAGAG+GGG | 0.691713 | tig0011086:+20861 | None:intergenic |
AGAGACATGGGCATTCATGG+AGG | 0.712922 | tig0011086:-20055 | Msa1349860:CDS |
GGCCTCGGCTACTTTCTCAG+CGG | 0.713672 | tig0011086:+19927 | None:intergenic |
AGGGTTCTGAGAAGGACGAG+GGG | 0.727880 | tig0011086:+20581 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGATTTTTTTTATTGTATT+AGG | + | tig0011086:19499-19518 | None:intergenic | 10.0% |
!! | AAGTTAAAATCAAATAGAAA+AGG | + | tig0011086:20260-20279 | None:intergenic | 15.0% |
!! | ATATTGTTCTTAAATTGTTG+AGG | - | tig0011086:18765-18784 | Msa1349860:CDS | 20.0% |
!!! | TTGAATATTTGGTTTAAACT+TGG | - | tig0011086:19208-19227 | Msa1349860:intron | 20.0% |
!!! | ATATACTGAAATTTGTTGAT+AGG | - | tig0011086:19298-19317 | Msa1349860:intron | 20.0% |
!!! | TTTGTATGTTGGTTTAAATT+TGG | - | tig0011086:19333-19352 | Msa1349860:intron | 20.0% |
!!! | ATAAAAACTATTTTCAACCA+AGG | - | tig0011086:19542-19561 | Msa1349860:intron | 20.0% |
!!! | TAAAAACTATTTTCAACCAA+GGG | - | tig0011086:19543-19562 | Msa1349860:intron | 20.0% |
!! | ACTAAAATACTCAAAGAAAA+AGG | + | tig0011086:19830-19849 | None:intergenic | 20.0% |
!! | CATAATCAATCTAAAGAATT+AGG | + | tig0011086:19918-19937 | None:intergenic | 20.0% |
!! | CAAAATTATGAATGAAAATG+AGG | + | tig0011086:20800-20819 | None:intergenic | 20.0% |
!!! | GAAAGAAGTGATTGTTTTAA+GGG | + | tig0011086:18167-18186 | None:intergenic | 25.0% |
! | ATTGTTGAGGAATATTGTTA+AGG | - | tig0011086:18778-18797 | Msa1349860:CDS | 25.0% |
! | ATGTTAAGTTTAGGAAGATT+AGG | - | tig0011086:18810-18829 | Msa1349860:CDS | 25.0% |
! | AAACTTGGTTGTATAAATAG+AGG | - | tig0011086:19223-19242 | Msa1349860:intron | 25.0% |
! | AACTTGGTTGTATAAATAGA+GGG | - | tig0011086:19224-19243 | Msa1349860:intron | 25.0% |
! | TTAAACCAACATACAAAAGT+TGG | + | tig0011086:19330-19349 | None:intergenic | 25.0% |
! | TTGCATAAAAGTAGAAAAGT+CGG | - | tig0011086:19517-19536 | Msa1349860:intron | 25.0% |
! | CAATATAGCTTATGAAAACA+GGG | + | tig0011086:19638-19657 | None:intergenic | 25.0% |
!!! | ATGTCATAAGCTATTTTCAT+AGG | - | tig0011086:19705-19724 | Msa1349860:intron | 25.0% |
!!! | CTTTGAGTATTTTAGTTTGA+TGG | - | tig0011086:19834-19853 | Msa1349860:intron | 25.0% |
! | GATACACAAGAACTATTATT+AGG | - | tig0011086:20156-20175 | Msa1349860:CDS | 25.0% |
!!! | CAAACGTAAATTGTTATTTG+GGG | + | tig0011086:20326-20345 | None:intergenic | 25.0% |
!!! | CCAAACGTAAATTGTTATTT+GGG | + | tig0011086:20327-20346 | None:intergenic | 25.0% |
!! | TCCAAACGTAAATTGTTATT+TGG | + | tig0011086:20328-20347 | None:intergenic | 25.0% |
!!! | TGCTTTAAAAGAATCATGTT+TGG | - | tig0011086:20468-20487 | Msa1349860:CDS | 25.0% |
! | AAAGAGAATAGTGAAAAGTA+AGG | + | tig0011086:20737-20756 | None:intergenic | 25.0% |
!! | CGAAAGAAGTGATTGTTTTA+AGG | + | tig0011086:18168-18187 | None:intergenic | 30.0% |
TTGTTCTTCATAGTCGAAAA+TGG | - | tig0011086:18220-18239 | Msa1349860:three_prime_UTR | 30.0% | |
GATGTAAAAGACAAGATGAA+AGG | - | tig0011086:18245-18264 | Msa1349860:three_prime_UTR | 30.0% | |
AAGAAGAAGAAGAAGTGAAA+GGG | + | tig0011086:18292-18311 | None:intergenic | 30.0% | |
TCTTCTTCTGGTAAATTCAA+AGG | - | tig0011086:18308-18327 | Msa1349860:exon | 30.0% | |
TCTTCTCAAAGATCTCAAAA+TGG | - | tig0011086:18530-18549 | Msa1349860:intron | 30.0% | |
! | CATCATCATCGTTTTCAATT+GGG | + | tig0011086:18649-18668 | None:intergenic | 30.0% |
! | TCATCATCATCGTTTTCAAT+TGG | + | tig0011086:18650-18669 | None:intergenic | 30.0% |
TTCTGAGTCTAATACTGAAT+TGG | - | tig0011086:18691-18710 | Msa1349860:intron | 30.0% | |
ACTGAATTGGAGATTTCTAT+TGG | - | tig0011086:18704-18723 | Msa1349860:intron | 30.0% | |
TCTATTGGTACTTATGTTTC+AGG | - | tig0011086:18719-18738 | Msa1349860:intron | 30.0% | |
CTATTGGTACTTATGTTTCA+GGG | - | tig0011086:18720-18739 | Msa1349860:intron | 30.0% | |
AACCTGAGAATGTTAAGTTT+AGG | - | tig0011086:18801-18820 | Msa1349860:CDS | 30.0% | |
TTCCTAAACTTAACATTCTC+AGG | + | tig0011086:18806-18825 | None:intergenic | 30.0% | |
TAAGTTTAGGAAGATTAGGA+TGG | - | tig0011086:18814-18833 | Msa1349860:CDS | 30.0% | |
AAGTTTAGGAAGATTAGGAT+GGG | - | tig0011086:18815-18834 | Msa1349860:CDS | 30.0% | |
GTTAGGATTTGAACTTAAAG+AGG | - | tig0011086:18898-18917 | Msa1349860:CDS | 30.0% | |
TTTGAACTTAAAGAGGAGAA+CGG | - | tig0011086:18905-18924 | Msa1349860:CDS | 30.0% | |
GATCAAATTAACTTTCTCCT+CGG | + | tig0011086:18960-18979 | None:intergenic | 30.0% | |
!!! | TCTGTCAATCTTTTTTGGTT+CGG | + | tig0011086:19080-19099 | None:intergenic | 30.0% |
ACTTGGTTGTATAAATAGAG+GGG | - | tig0011086:19225-19244 | Msa1349860:intron | 30.0% | |
! | TTTGTCCAACTTTTGTATGT+TGG | - | tig0011086:19322-19341 | Msa1349860:intron | 30.0% |
TTAAATTTGGCTGTAATGCA+AGG | - | tig0011086:19346-19365 | Msa1349860:intron | 30.0% | |
TGCTTAAACCTTTACTTGAT+AGG | + | tig0011086:19415-19434 | None:intergenic | 30.0% | |
! | CAAGGGTATACTTTGTTTAT+GGG | - | tig0011086:19560-19579 | Msa1349860:intron | 30.0% |
CCAATATAGCTTATGAAAAC+AGG | + | tig0011086:19639-19658 | None:intergenic | 30.0% | |
! | CCTGTTTTCATAAGCTATAT+TGG | - | tig0011086:19636-19655 | Msa1349860:intron | 30.0% |
! | CCTTATTTGAGTTTATCTAC+TGG | + | tig0011086:19761-19780 | None:intergenic | 30.0% |
CCAGTAGATAAACTCAAATA+AGG | - | tig0011086:19758-19777 | Msa1349860:intron | 30.0% | |
TCAAATAAGGTAATCCAAAC+AGG | - | tig0011086:19771-19790 | Msa1349860:intron | 30.0% | |
! | TTTTTCATAAAGAGCCTGTT+TGG | + | tig0011086:19788-19807 | None:intergenic | 30.0% |
GATTCAAATTTACCTCTTTC+AGG | - | tig0011086:19950-19969 | Msa1349860:CDS | 30.0% | |
! | GCTTTTCTTTAAGTGACTTT+GGG | + | tig0011086:20115-20134 | None:intergenic | 30.0% |
! | TGCTTTTCTTTAAGTGACTT+TGG | + | tig0011086:20116-20135 | None:intergenic | 30.0% |
! | ATTAGGATTCAGTTTTCAGA+TGG | - | tig0011086:20173-20192 | Msa1349860:CDS | 30.0% |
TAACTTATGCCTTTCAATTG+TGG | - | tig0011086:20274-20293 | Msa1349860:CDS | 30.0% | |
GGTTAATTTCCACAATTGAA+AGG | + | tig0011086:20286-20305 | None:intergenic | 30.0% | |
CCCAAATAACAATTTACGTT+TGG | - | tig0011086:20324-20343 | Msa1349860:CDS | 30.0% | |
!! | AACAACAGAATCTGTTTCTA+GGG | + | tig0011086:20620-20639 | None:intergenic | 30.0% |
! | AAACAACAGAATCTGTTTCT+AGG | + | tig0011086:20621-20640 | None:intergenic | 30.0% |
AATGCTTAACCATTTACAAG+TGG | + | tig0011086:20682-20701 | None:intergenic | 30.0% | |
!!! | CTCTTTTTTTTCCCCTTAAA+TGG | - | tig0011086:20751-20770 | Msa1349860:exon | 30.0% |
!!! | TTTTTTTTCCCCTTAAATGG+TGG | - | tig0011086:20754-20773 | Msa1349860:exon | 30.0% |
!!! | TTTTTTTCCCCTTAAATGGT+GGG | - | tig0011086:20755-20774 | Msa1349860:exon | 30.0% |
GAATAGATGAAATAGAGAGG+GGG | + | tig0011086:18124-18143 | None:intergenic | 35.0% | |
GGAATAGATGAAATAGAGAG+GGG | + | tig0011086:18125-18144 | None:intergenic | 35.0% | |
CGGAATAGATGAAATAGAGA+GGG | + | tig0011086:18126-18145 | None:intergenic | 35.0% | |
ACGGAATAGATGAAATAGAG+AGG | + | tig0011086:18127-18146 | None:intergenic | 35.0% | |
GAAGAAGAAGAAGAAGTGAA+AGG | + | tig0011086:18293-18312 | None:intergenic | 35.0% | |
ACTTCTTCTTCTTCTTCTTC+TGG | - | tig0011086:18296-18315 | Msa1349860:exon | 35.0% | |
GAAGTGACGAATGAATCAAA+TGG | + | tig0011086:18512-18531 | None:intergenic | 35.0% | |
CGAAAGGGTTGTTTACAAAT+TGG | + | tig0011086:18581-18600 | None:intergenic | 35.0% | |
ATATCAACAGAACCTTCAGA+CGG | + | tig0011086:18749-18768 | None:intergenic | 35.0% | |
TCCAAAGATTAAAGAAGCTG+TGG | - | tig0011086:18841-18860 | Msa1349860:CDS | 35.0% | |
CCAAAGATTAAAGAAGCTGT+GGG | - | tig0011086:18842-18861 | Msa1349860:CDS | 35.0% | |
! | GTTGAATTGCTGAGTTTGTT+AGG | - | tig0011086:18881-18900 | Msa1349860:CDS | 35.0% |
AAATTAACTTTCTCCTCGGT+AGG | + | tig0011086:18956-18975 | None:intergenic | 35.0% | |
CAAGAAAGCAATTGTGTTGT+TGG | - | tig0011086:18979-18998 | Msa1349860:CDS | 35.0% | |
GGTGTTAAAGTTTCTCTCTT+TGG | + | tig0011086:19028-19047 | None:intergenic | 35.0% | |
ACCAAAAAAGATTGACAGAC+AGG | - | tig0011086:19081-19100 | Msa1349860:intron | 35.0% | |
!!! | ACCTGTCTGTCAATCTTTTT+TGG | + | tig0011086:19085-19104 | None:intergenic | 35.0% |
!! | TTTTGCACAGTTTGAGACTA+GGG | - | tig0011086:19184-19203 | Msa1349860:intron | 35.0% |
TGTTGGGAAGTAATTGTGTA+GGG | - | tig0011086:19267-19286 | Msa1349860:intron | 35.0% | |
TTACTTGATAGGATTGTGGA+TGG | + | tig0011086:19404-19423 | None:intergenic | 35.0% | |
TCCACAATCCTATCAAGTAA+AGG | - | tig0011086:19404-19423 | Msa1349860:intron | 35.0% | |
ACCTTTACTTGATAGGATTG+TGG | + | tig0011086:19408-19427 | None:intergenic | 35.0% | |
CTACTAAGCTGAAGAAGTTA+TGG | - | tig0011086:19438-19457 | Msa1349860:intron | 35.0% | |
CGTAGGGTGTAAATATACTT+GGG | + | tig0011086:19466-19485 | None:intergenic | 35.0% | |
TCGTAGGGTGTAAATATACT+TGG | + | tig0011086:19467-19486 | None:intergenic | 35.0% | |
ATTAGGATGAGTTTCTCGTA+GGG | + | tig0011086:19482-19501 | None:intergenic | 35.0% | |
TATTAGGATGAGTTTCTCGT+AGG | + | tig0011086:19483-19502 | None:intergenic | 35.0% | |
CCATAAACAAAGTATACCCT+TGG | + | tig0011086:19562-19581 | None:intergenic | 35.0% | |
! | CCAAGGGTATACTTTGTTTA+TGG | - | tig0011086:19559-19578 | Msa1349860:intron | 35.0% |
! | AATTTACCTCTTTCAGGTGA+AGG | - | tig0011086:19956-19975 | Msa1349860:CDS | 35.0% |
TGAGAAGAGAAGCTGAATTA+AGG | - | tig0011086:20057-20076 | Msa1349860:CDS | 35.0% | |
ACAGTAAGACACTAACACTT+GGG | + | tig0011086:20383-20402 | None:intergenic | 35.0% | |
AACAGTAAGACACTAACACT+TGG | + | tig0011086:20384-20403 | None:intergenic | 35.0% | |
TCTTACTGTTTATTCCGAGT+TGG | - | tig0011086:20394-20413 | Msa1349860:CDS | 35.0% | |
CACAAACTGCATTATCAACA+TGG | + | tig0011086:20443-20462 | None:intergenic | 35.0% | |
!! | ACAACAGAATCTGTTTCTAG+GGG | + | tig0011086:20619-20638 | None:intergenic | 35.0% |
!!! | ACAGATTCTGTTGTTTTCAC+CGG | - | tig0011086:20625-20644 | Msa1349860:CDS | 35.0% |
!!! | CAGCAATTCATTTTTGAGAC+CGG | + | tig0011086:20647-20666 | None:intergenic | 35.0% |
ATCAGTGAACCACTTGTAAA+TGG | - | tig0011086:20670-20689 | Msa1349860:CDS | 35.0% | |
!!! | TTTTTTCCCCTTAAATGGTG+GGG | - | tig0011086:20756-20775 | Msa1349860:exon | 35.0% |
TCTATATCCCCACCATTTAA+GGG | + | tig0011086:20766-20785 | None:intergenic | 35.0% | |
TCATGAATGTAGGTAGGAAT+TGG | + | tig0011086:20887-20906 | None:intergenic | 35.0% | |
AATTCCTACCTACATTCATG+AGG | - | tig0011086:20886-20905 | Msa1349860:five_prime_UTR | 35.0% | |
GGATAAGAAACAAACACGCA+CGG | + | tig0011086:18146-18165 | None:intergenic | 40.0% | |
TCTGGTAAATTCAAAGGCCA+AGG | - | tig0011086:18314-18333 | Msa1349860:CDS | 40.0% | |
! | TAGGTTTGGGTTTGGGATTA+GGG | + | tig0011086:18424-18443 | None:intergenic | 40.0% |
! | TTGCTTTGATCTGAAGCGAT+CGG | + | tig0011086:18452-18471 | None:intergenic | 40.0% |
AAATGGATCAAAGCCATCTG+CGG | + | tig0011086:18495-18514 | None:intergenic | 40.0% | |
CCCACAGCTTCTTTAATCTT+TGG | + | tig0011086:18845-18864 | None:intergenic | 40.0% | |
! | TGTGTTGTTGGAACCACAAT+TGG | - | tig0011086:18991-19010 | Msa1349860:CDS | 40.0% |
! | GGAGTATCTTGAACCAATTG+TGG | + | tig0011086:19007-19026 | None:intergenic | 40.0% |
!!! | AATCTTTTTTGGTTCGGCCT+CGG | + | tig0011086:19074-19093 | None:intergenic | 40.0% |
!! | GTTTTGCACAGTTTGAGACT+AGG | - | tig0011086:19183-19202 | Msa1349860:intron | 40.0% |
GAGACTAGGGCTTGAATATT+TGG | - | tig0011086:19197-19216 | Msa1349860:intron | 40.0% | |
TAGAGGGGAAAAGTAAACTG+TGG | - | tig0011086:19240-19259 | Msa1349860:intron | 40.0% | |
AGAGGGGAAAAGTAAACTGT+GGG | - | tig0011086:19241-19260 | Msa1349860:intron | 40.0% | |
AAGTAAACTGTGGGTTCTGT+TGG | - | tig0011086:19250-19269 | Msa1349860:intron | 40.0% | |
AGTAAACTGTGGGTTCTGTT+GGG | - | tig0011086:19251-19270 | Msa1349860:intron | 40.0% | |
CTGTTGGGAAGTAATTGTGT+AGG | - | tig0011086:19266-19285 | Msa1349860:intron | 40.0% | |
AGCTTATGAAAACAGGGTCA+TGG | + | tig0011086:19632-19651 | None:intergenic | 40.0% | |
AAGCAATTGTGAGACTGTTC+GGG | + | tig0011086:19735-19754 | None:intergenic | 40.0% | |
CAAGCAATTGTGAGACTGTT+CGG | + | tig0011086:19736-19755 | None:intergenic | 40.0% | |
TAATGACACACATGCTCTGT+GGG | + | tig0011086:19872-19891 | None:intergenic | 40.0% | |
TTAATGACACACATGCTCTG+TGG | + | tig0011086:19873-19892 | None:intergenic | 40.0% | |
GAACGTTTGTAGAAGGAATC+TGG | + | tig0011086:20026-20045 | None:intergenic | 40.0% | |
TTCAGCTGAACGTTTGTAGA+AGG | + | tig0011086:20033-20052 | None:intergenic | 40.0% | |
TCAGATGGAGTTGTACTTCA+AGG | - | tig0011086:20188-20207 | Msa1349860:CDS | 40.0% | |
TTCAAGGTGTATTTGCTCCA+TGG | - | tig0011086:20204-20223 | Msa1349860:CDS | 40.0% | |
TCAAGGTGTATTTGCTCCAT+GGG | - | tig0011086:20205-20224 | Msa1349860:CDS | 40.0% | |
! | GGGGAACTTTTATGTCAGAA+CGG | + | tig0011086:20307-20326 | None:intergenic | 40.0% |
TGCATCCTGTAGTTGTTCAA+CGG | - | tig0011086:20503-20522 | Msa1349860:CDS | 40.0% | |
GCAAAAAGCCAAAACGATAG+AGG | - | tig0011086:20555-20574 | Msa1349860:CDS | 40.0% | |
! | GTCTTCTTCCTCTATCGTTT+TGG | + | tig0011086:20566-20585 | None:intergenic | 40.0% |
TTGAACTTGATTAGGGCAGA+AGG | + | tig0011086:20595-20614 | None:intergenic | 40.0% | |
TAGGGGCTTGAACTTGATTA+GGG | + | tig0011086:20602-20621 | None:intergenic | 40.0% | |
CGGTCTCAAAAATGAATTGC+TGG | - | tig0011086:20645-20664 | Msa1349860:CDS | 40.0% | |
CTATATCCCCACCATTTAAG+GGG | + | tig0011086:20765-20784 | None:intergenic | 40.0% | |
GTCTATATCCCCACCATTTA+AGG | + | tig0011086:20767-20786 | None:intergenic | 40.0% | |
GTGGGGATATAGACACAATT+CGG | - | tig0011086:20773-20792 | Msa1349860:five_prime_UTR | 40.0% | |
ATTGCCTCATGAATGTAGGT+AGG | + | tig0011086:20893-20912 | None:intergenic | 40.0% | |
!! | TTGGGATTAGGGTTCTGAGA+AGG | + | tig0011086:18413-18432 | None:intergenic | 45.0% |
! | GTAGGTTTGGGTTTGGGATT+AGG | + | tig0011086:18425-18444 | None:intergenic | 45.0% |
AATGGATCAAAGCCATCTGC+GGG | + | tig0011086:18494-18513 | None:intergenic | 45.0% | |
TAAACAACCCTTTCGATCCG+AGG | - | tig0011086:18586-18605 | Msa1349860:intron | 45.0% | |
ACTTTCTCAGCGGAAATGGT+AGG | + | tig0011086:19049-19068 | None:intergenic | 45.0% | |
GGGAAGTAATTGTGTAGGGT+TGG | - | tig0011086:19271-19290 | Msa1349860:intron | 45.0% | |
AGAAGACCTTCACCTGAAAG+AGG | + | tig0011086:19965-19984 | None:intergenic | 45.0% | |
CTACAAACGTTCAGCTGAAG+AGG | - | tig0011086:20034-20053 | Msa1349860:CDS | 45.0% | |
ACCAACTACTGCTCTGTATG+AGG | - | tig0011086:20229-20248 | Msa1349860:CDS | 45.0% | |
ACCTCATACAGAGCAGTAGT+TGG | + | tig0011086:20233-20252 | None:intergenic | 45.0% | |
ACAATGCTGAGTTGCCAACT+CGG | + | tig0011086:20411-20430 | None:intergenic | 45.0% | |
ATCCCATGTTTCCCAAAAGC+AGG | - | tig0011086:20532-20551 | Msa1349860:CDS | 45.0% | |
TCCCATGTTTCCCAAAAGCA+GGG | - | tig0011086:20533-20552 | Msa1349860:CDS | 45.0% | |
!! | TGGCTTTTTGCCCTGCTTTT+GGG | + | tig0011086:20546-20565 | None:intergenic | 45.0% |
!! | TTGGCTTTTTGCCCTGCTTT+TGG | + | tig0011086:20547-20566 | None:intergenic | 45.0% |
AACGATAGAGGAAGAAGACC+TGG | - | tig0011086:20567-20586 | Msa1349860:CDS | 45.0% | |
CTAGGGGCTTGAACTTGATT+AGG | + | tig0011086:20603-20622 | None:intergenic | 45.0% | |
AAAGGCCAAGGTCGAGTCTT+GGG | - | tig0011086:18326-18345 | Msa1349860:CDS | 50.0% | |
AAGAACCCAAGACTCGACCT+TGG | + | tig0011086:18334-18353 | None:intergenic | 50.0% | |
GGGGTAGGAATGGAATTTGC+AGG | + | tig0011086:18380-18399 | None:intergenic | 50.0% | |
!! | TAGGGTTCTGAGAAGGACGA+GGG | + | tig0011086:18406-18425 | None:intergenic | 50.0% |
!! | TTAGGGTTCTGAGAAGGACG+AGG | + | tig0011086:18407-18426 | None:intergenic | 50.0% |
! | GGTGGAGTAGGTTTGGGTTT+GGG | + | tig0011086:18431-18450 | None:intergenic | 50.0% |
! | CTTTGATCTGAAGCGATCGG+TGG | + | tig0011086:18449-18468 | None:intergenic | 50.0% |
GTGTTCAGAAACCTCGTCCT+CGG | + | tig0011086:18606-18625 | None:intergenic | 50.0% | |
GTTTCAGGGAATCCGTCTGA+AGG | - | tig0011086:18734-18753 | Msa1349860:intron | 50.0% | |
GATTAAAGAAGCTGTGGGCG+AGG | - | tig0011086:18847-18866 | Msa1349860:CDS | 50.0% | |
AAGAGGAGAACGGAGAGACA+TGG | - | tig0011086:18915-18934 | Msa1349860:CDS | 50.0% | |
AGAGGAGAACGGAGAGACAT+GGG | - | tig0011086:18916-18935 | Msa1349860:CDS | 50.0% | |
AGAGACATGGGCATTCATGG+AGG | - | tig0011086:18928-18947 | Msa1349860:CDS | 50.0% | |
ATTCATGGAGGTTCCTACCG+AGG | - | tig0011086:18940-18959 | Msa1349860:CDS | 50.0% | |
! | GGCTACTTTCTCAGCGGAAA+TGG | + | tig0011086:19053-19072 | None:intergenic | 50.0% |
! | AGAGCAGTAGTTGGTTCCCA+TGG | + | tig0011086:20224-20243 | None:intergenic | 50.0% |
ACACGCCGTTGAACAACTAC+AGG | + | tig0011086:20511-20530 | None:intergenic | 50.0% | |
!! | GCCCTGCTTTTGGGAAACAT+GGG | + | tig0011086:20537-20556 | None:intergenic | 50.0% |
!! | TGCCCTGCTTTTGGGAAACA+TGG | + | tig0011086:20538-20557 | None:intergenic | 50.0% |
CAAAGGCCAAGGTCGAGTCT+TGG | - | tig0011086:18325-18344 | Msa1349860:CDS | 55.0% | |
TCTGAGAAGGACGAGGGGTA+GGG | + | tig0011086:18400-18419 | None:intergenic | 55.0% | |
! | TTCTGAGAAGGACGAGGGGT+AGG | + | tig0011086:18401-18420 | None:intergenic | 55.0% |
!! | AGGGTTCTGAGAAGGACGAG+GGG | + | tig0011086:18405-18424 | None:intergenic | 55.0% |
! | CGGTGGAGTAGGTTTGGGTT+TGG | + | tig0011086:18432-18451 | None:intergenic | 55.0% |
GCGATCGGTGGAGTAGGTTT+GGG | + | tig0011086:18437-18456 | None:intergenic | 55.0% | |
AGCGATCGGTGGAGTAGGTT+TGG | + | tig0011086:18438-18457 | None:intergenic | 55.0% | |
! | TCTGAAGCGATCGGTGGAGT+AGG | + | tig0011086:18443-18462 | None:intergenic | 55.0% |
AAACCACGCAAACCCGCAGA+TGG | - | tig0011086:18479-18498 | Msa1349860:CDS | 55.0% | |
ACCTCGTCCTCGGATCGAAA+GGG | + | tig0011086:18596-18615 | None:intergenic | 55.0% | |
AACCTCGTCCTCGGATCGAA+AGG | + | tig0011086:18597-18616 | None:intergenic | 55.0% | |
GGACGAGGTTTCTGAACACG+TGG | - | tig0011086:18607-18626 | Msa1349860:intron | 55.0% | |
GAAGCTGTGGGCGAGGTTAT+TGG | - | tig0011086:18854-18873 | Msa1349860:CDS | 55.0% | |
CGGAGAGACATGGGCATTCA+TGG | - | tig0011086:18925-18944 | Msa1349860:CDS | 55.0% | |
TTCCGCTGAGAAAGTAGCCG+AGG | - | tig0011086:19054-19073 | Msa1349860:intron | 55.0% | |
!! | TGATTAGGGCAGAAGGCACC+AGG | + | tig0011086:20588-20607 | None:intergenic | 55.0% |
ACGAGGGGTAGGGGTAGGAA+TGG | + | tig0011086:18390-18409 | None:intergenic | 60.0% | |
CTGAGAAGGACGAGGGGTAG+GGG | + | tig0011086:18399-18418 | None:intergenic | 60.0% | |
AAGCCATCTGCGGGTTTGCG+TGG | + | tig0011086:18485-18504 | None:intergenic | 60.0% | |
ACCCTTTCGATCCGAGGACG+AGG | - | tig0011086:18592-18611 | Msa1349860:intron | 60.0% | |
GCTGTGGGCGAGGTTATTGG+TGG | - | tig0011086:18857-18876 | Msa1349860:CDS | 60.0% | |
! | GGCCTCGGCTACTTTCTCAG+CGG | + | tig0011086:19059-19078 | None:intergenic | 60.0% |
GAAGGACGAGGGGTAGGGGT+AGG | + | tig0011086:18395-18414 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0011086 | gene | 18091 | 20914 | 18091 | ID=Msa1349860;Name=Msa1349860 |
tig0011086 | mRNA | 18091 | 20914 | 18091 | ID=Msa1349860-mRNA-1;Parent=Msa1349860;Name=Msa1349860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=148|1|1|1|1|1|3|218|460 |
tig0011086 | exon | 18091 | 18548 | 18091 | ID=Msa1349860-mRNA-1:exon:7171;Parent=Msa1349860-mRNA-1 |
tig0011086 | exon | 18755 | 19033 | 18755 | ID=Msa1349860-mRNA-1:exon:7170;Parent=Msa1349860-mRNA-1 |
tig0011086 | exon | 19903 | 20914 | 19903 | ID=Msa1349860-mRNA-1:exon:7169;Parent=Msa1349860-mRNA-1 |
tig0011086 | five_prime_UTR | 20767 | 20914 | 20767 | ID=Msa1349860-mRNA-1:five_prime_utr;Parent=Msa1349860-mRNA-1 |
tig0011086 | CDS | 19903 | 20766 | 19903 | ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1 |
tig0011086 | CDS | 18755 | 19033 | 18755 | ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1 |
tig0011086 | CDS | 18309 | 18548 | 18309 | ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1 |
tig0011086 | three_prime_UTR | 18091 | 18308 | 18091 | ID=Msa1349860-mRNA-1:three_prime_utr;Parent=Msa1349860-mRNA-1 |
Gene Sequence |
Protein sequence |