AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349860 MtrunA17_Chr8g0391471 94.647 467 14 5 1 460 1 463 0.0 827
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349860 AT2G01650.2 61.684 475 146 7 1 457 1 457 0.0 550
Msa1349860 AT2G01650.1 61.684 475 146 7 1 457 1 457 0.0 550
Msa1349860 AT2G01650.3 59.649 399 125 7 1 381 1 381 1.32e-153 441

Find 118 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATATCCCCACCATTTA+AGG 0.138844 tig0011086:+18219 None:intergenic
TCTATTGGTACTTATGTTTC+AGG 0.140987 tig0011086:-20264 Msa1349860:CDS
GTAGGTTTGGGTTTGGGATT+AGG 0.175605 tig0011086:+20561 None:intergenic
CGAAAGGGTTGTTTACAAAT+TGG 0.223879 tig0011086:+20405 None:intergenic
CCCACAGCTTCTTTAATCTT+TGG 0.237677 tig0011086:+20141 None:intergenic
TTGTTCTTCATAGTCGAAAA+TGG 0.244653 tig0011086:-20763 Msa1349860:exon
CTAGGGGCTTGAACTTGATT+AGG 0.247442 tig0011086:+18383 None:intergenic
GGTGTTAAAGTTTCTCTCTT+TGG 0.252715 tig0011086:+19958 None:intergenic
TAGGTTTGGGTTTGGGATTA+GGG 0.259606 tig0011086:+20562 None:intergenic
GATACACAAGAACTATTATT+AGG 0.271026 tig0011086:-18827 Msa1349860:CDS
TGAGAAGAGAAGCTGAATTA+AGG 0.273073 tig0011086:-18926 Msa1349860:CDS
GGTGGAGTAGGTTTGGGTTT+GGG 0.283318 tig0011086:+20555 None:intergenic
GTCTTCTTCCTCTATCGTTT+TGG 0.294303 tig0011086:+18420 None:intergenic
ATCAGTGAACCACTTGTAAA+TGG 0.308403 tig0011086:-18313 Msa1349860:CDS
GAAGCTGTGGGCGAGGTTAT+TGG 0.314917 tig0011086:-20129 Msa1349860:CDS
ACTGAATTGGAGATTTCTAT+TGG 0.324761 tig0011086:-20279 Msa1349860:CDS
TGCTTTAAAAGAATCATGTT+TGG 0.332951 tig0011086:-18515 Msa1349860:CDS
AAACAACAGAATCTGTTTCT+AGG 0.337000 tig0011086:+18365 None:intergenic
CGGTGGAGTAGGTTTGGGTT+TGG 0.338165 tig0011086:+20554 None:intergenic
TTCCTAAACTTAACATTCTC+AGG 0.339946 tig0011086:+20180 None:intergenic
GTTGAATTGCTGAGTTTGTT+AGG 0.350477 tig0011086:-20102 Msa1349860:CDS
CGGAGAGACATGGGCATTCA+TGG 0.352162 tig0011086:-20058 Msa1349860:CDS
TTCTGAGTCTAATACTGAAT+TGG 0.356720 tig0011086:-20292 Msa1349860:CDS
TTCAGCTGAACGTTTGTAGA+AGG 0.363666 tig0011086:+18953 None:intergenic
TCTTCTCAAAGATCTCAAAA+TGG 0.368840 tig0011086:-20453 Msa1349860:CDS
AGCGATCGGTGGAGTAGGTT+TGG 0.369595 tig0011086:+20548 None:intergenic
ATGTTAAGTTTAGGAAGATT+AGG 0.375559 tig0011086:-20173 Msa1349860:CDS
CAAGAAAGCAATTGTGTTGT+TGG 0.381393 tig0011086:-20004 Msa1349860:CDS
GCGATCGGTGGAGTAGGTTT+GGG 0.384107 tig0011086:+20549 None:intergenic
TAGGGGCTTGAACTTGATTA+GGG 0.388598 tig0011086:+18384 None:intergenic
GGGGTAGGAATGGAATTTGC+AGG 0.422062 tig0011086:+20606 None:intergenic
TCAGATGGAGTTGTACTTCA+AGG 0.423651 tig0011086:-18795 Msa1349860:CDS
AACCTGAGAATGTTAAGTTT+AGG 0.430889 tig0011086:-20182 Msa1349860:CDS
AAAGGCCAAGGTCGAGTCTT+GGG 0.431284 tig0011086:-20657 Msa1349860:CDS
ATTGTTGAGGAATATTGTTA+AGG 0.431444 tig0011086:-20205 Msa1349860:CDS
AACAACAGAATCTGTTTCTA+GGG 0.439799 tig0011086:+18366 None:intergenic
TCATGAATGTAGGTAGGAAT+TGG 0.442163 tig0011086:+18099 None:intergenic
GAACGTTTGTAGAAGGAATC+TGG 0.447302 tig0011086:+18960 None:intergenic
TCTATATCCCCACCATTTAA+GGG 0.448956 tig0011086:+18220 None:intergenic
CTATTGGTACTTATGTTTCA+GGG 0.450380 tig0011086:-20263 Msa1349860:CDS
AAAGAGAATAGTGAAAAGTA+AGG 0.457100 tig0011086:+18249 None:intergenic
TGTGTTGTTGGAACCACAAT+TGG 0.459857 tig0011086:-19992 Msa1349860:CDS
GGCTACTTTCTCAGCGGAAA+TGG 0.460122 tig0011086:+19933 None:intergenic
ATCCCATGTTTCCCAAAAGC+AGG 0.471596 tig0011086:-18451 Msa1349860:CDS
TCTGAGAAGGACGAGGGGTA+GGG 0.472504 tig0011086:+20586 None:intergenic
TCTTCTTCTGGTAAATTCAA+AGG 0.474590 tig0011086:-20675 Msa1349860:CDS
CAAAGGCCAAGGTCGAGTCT+TGG 0.475772 tig0011086:-20658 Msa1349860:CDS
TTCTGAGAAGGACGAGGGGT+AGG 0.483289 tig0011086:+20585 None:intergenic
CTGAGAAGGACGAGGGGTAG+GGG 0.483771 tig0011086:+20587 None:intergenic
GTTAGGATTTGAACTTAAAG+AGG 0.484850 tig0011086:-20085 Msa1349860:CDS
AACCTCGTCCTCGGATCGAA+AGG 0.485306 tig0011086:+20389 None:intergenic
ACCAACTACTGCTCTGTATG+AGG 0.485891 tig0011086:-18754 Msa1349860:intron
TTCAAGGTGTATTTGCTCCA+TGG 0.496010 tig0011086:-18779 Msa1349860:CDS
TAAGTTTAGGAAGATTAGGA+TGG 0.496165 tig0011086:-20169 Msa1349860:CDS
CAAAATTATGAATGAAAATG+AGG 0.497430 tig0011086:+18186 None:intergenic
ACCCTTTCGATCCGAGGACG+AGG 0.506482 tig0011086:-20391 Msa1349860:CDS
CTACAAACGTTCAGCTGAAG+AGG 0.515065 tig0011086:-18949 Msa1349860:CDS
TCAAGGTGTATTTGCTCCAT+GGG 0.515302 tig0011086:-18778 Msa1349860:CDS
GAAGTGACGAATGAATCAAA+TGG 0.527530 tig0011086:+20474 None:intergenic
ACCTCGTCCTCGGATCGAAA+GGG 0.530145 tig0011086:+20390 None:intergenic
GTGTTCAGAAACCTCGTCCT+CGG 0.530401 tig0011086:+20380 None:intergenic
GTGGGGATATAGACACAATT+CGG 0.531118 tig0011086:-18210 Msa1349860:three_prime_UTR
ATATTGTTCTTAAATTGTTG+AGG 0.534264 tig0011086:-20218 Msa1349860:CDS
AAGAGGAGAACGGAGAGACA+TGG 0.535036 tig0011086:-20068 Msa1349860:CDS
AAGCCATCTGCGGGTTTGCG+TGG 0.535106 tig0011086:+20501 None:intergenic
TTGCTTTGATCTGAAGCGAT+CGG 0.538206 tig0011086:+20534 None:intergenic
CTTTGATCTGAAGCGATCGG+TGG 0.538600 tig0011086:+20537 None:intergenic
AGAGCAGTAGTTGGTTCCCA+TGG 0.544179 tig0011086:+18762 None:intergenic
ACACGCCGTTGAACAACTAC+AGG 0.546054 tig0011086:+18475 None:intergenic
TCTGGTAAATTCAAAGGCCA+AGG 0.550240 tig0011086:-20669 Msa1349860:CDS
GAAGGACGAGGGGTAGGGGT+AGG 0.552141 tig0011086:+20591 None:intergenic
TGATTAGGGCAGAAGGCACC+AGG 0.553360 tig0011086:+18398 None:intergenic
TCCAAAGATTAAAGAAGCTG+TGG 0.555466 tig0011086:-20142 Msa1349860:CDS
GATTAAAGAAGCTGTGGGCG+AGG 0.555589 tig0011086:-20136 Msa1349860:CDS
ACGAGGGGTAGGGGTAGGAA+TGG 0.557142 tig0011086:+20596 None:intergenic
AAATTAACTTTCTCCTCGGT+AGG 0.559081 tig0011086:+20030 None:intergenic
TTGGGATTAGGGTTCTGAGA+AGG 0.565323 tig0011086:+20573 None:intergenic
AAGTTTAGGAAGATTAGGAT+GGG 0.568581 tig0011086:-20168 Msa1349860:CDS
ATATATTGCCTCATGAATGT+AGG 0.569788 tig0011086:+18089 None:intergenic
GGAGTATCTTGAACCAATTG+TGG 0.569841 tig0011086:+19979 None:intergenic
AATGGATCAAAGCCATCTGC+GGG 0.571592 tig0011086:+20492 None:intergenic
AATGCTTAACCATTTACAAG+TGG 0.577084 tig0011086:+18304 None:intergenic
TCTGAAGCGATCGGTGGAGT+AGG 0.577813 tig0011086:+20543 None:intergenic
GATCAAATTAACTTTCTCCT+CGG 0.582104 tig0011086:+20026 None:intergenic
TTGAACTTGATTAGGGCAGA+AGG 0.585290 tig0011086:+18391 None:intergenic
TAAACAACCCTTTCGATCCG+AGG 0.585535 tig0011086:-20397 Msa1349860:CDS
GATGTAAAAGACAAGATGAA+AGG 0.585648 tig0011086:-20738 Msa1349860:CDS
GTTTCAGGGAATCCGTCTGA+AGG 0.588125 tig0011086:-20249 Msa1349860:CDS
AAGAACCCAAGACTCGACCT+TGG 0.590087 tig0011086:+20652 None:intergenic
ACCTCATACAGAGCAGTAGT+TGG 0.594344 tig0011086:+18753 None:intergenic
CGGAATAGATGAAATAGAGA+GGG 0.594503 tig0011086:+20860 None:intergenic
TTTGAACTTAAAGAGGAGAA+CGG 0.595229 tig0011086:-20078 Msa1349860:CDS
TGCATCCTGTAGTTGTTCAA+CGG 0.598631 tig0011086:-18480 Msa1349860:CDS
AGAGGAGAACGGAGAGACAT+GGG 0.598709 tig0011086:-20067 Msa1349860:CDS
TTAGGGTTCTGAGAAGGACG+AGG 0.599978 tig0011086:+20579 None:intergenic
AACGATAGAGGAAGAAGACC+TGG 0.600898 tig0011086:-18416 Msa1349860:CDS
AAATGGATCAAAGCCATCTG+CGG 0.612029 tig0011086:+20491 None:intergenic
AAACCACGCAAACCCGCAGA+TGG 0.614242 tig0011086:-20504 Msa1349860:CDS
TCCCATGTTTCCCAAAAGCA+GGG 0.615985 tig0011086:-18450 Msa1349860:CDS
ACTTTCTCAGCGGAAATGGT+AGG 0.622064 tig0011086:+19937 None:intergenic
CTATATCCCCACCATTTAAG+GGG 0.622105 tig0011086:+18221 None:intergenic
CCAAAGATTAAAGAAGCTGT+GGG 0.630530 tig0011086:-20141 Msa1349860:CDS
ACAACAGAATCTGTTTCTAG+GGG 0.631709 tig0011086:+18367 None:intergenic
ATTGCCTCATGAATGTAGGT+AGG 0.633785 tig0011086:+18093 None:intergenic
TAGGGTTCTGAGAAGGACGA+GGG 0.637909 tig0011086:+20580 None:intergenic
TTCCGCTGAGAAAGTAGCCG+AGG 0.648892 tig0011086:-19929 Msa1349860:CDS
ACGGAATAGATGAAATAGAG+AGG 0.650951 tig0011086:+20859 None:intergenic
GGATAAGAAACAAACACGCA+CGG 0.657948 tig0011086:+20840 None:intergenic
GCTGTGGGCGAGGTTATTGG+TGG 0.660528 tig0011086:-20126 Msa1349860:CDS
GAATAGATGAAATAGAGAGG+GGG 0.668449 tig0011086:+20862 None:intergenic
AATTCCTACCTACATTCATG+AGG 0.671047 tig0011086:-18097 Msa1349860:three_prime_UTR
ATATCAACAGAACCTTCAGA+CGG 0.678273 tig0011086:+20237 None:intergenic
ATTCATGGAGGTTCCTACCG+AGG 0.688667 tig0011086:-20043 Msa1349860:CDS
GGACGAGGTTTCTGAACACG+TGG 0.689204 tig0011086:-20376 Msa1349860:CDS
GGAATAGATGAAATAGAGAG+GGG 0.691713 tig0011086:+20861 None:intergenic
AGAGACATGGGCATTCATGG+AGG 0.712922 tig0011086:-20055 Msa1349860:CDS
GGCCTCGGCTACTTTCTCAG+CGG 0.713672 tig0011086:+19927 None:intergenic
AGGGTTCTGAGAAGGACGAG+GGG 0.727880 tig0011086:+20581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTTTTTTATTGTATT+AGG + tig0011086:19499-19518 None:intergenic 10.0%
!! AAGTTAAAATCAAATAGAAA+AGG + tig0011086:20260-20279 None:intergenic 15.0%
!! ATATTGTTCTTAAATTGTTG+AGG - tig0011086:18765-18784 Msa1349860:CDS 20.0%
!!! TTGAATATTTGGTTTAAACT+TGG - tig0011086:19208-19227 Msa1349860:intron 20.0%
!!! ATATACTGAAATTTGTTGAT+AGG - tig0011086:19298-19317 Msa1349860:intron 20.0%
!!! TTTGTATGTTGGTTTAAATT+TGG - tig0011086:19333-19352 Msa1349860:intron 20.0%
!!! ATAAAAACTATTTTCAACCA+AGG - tig0011086:19542-19561 Msa1349860:intron 20.0%
!!! TAAAAACTATTTTCAACCAA+GGG - tig0011086:19543-19562 Msa1349860:intron 20.0%
!! ACTAAAATACTCAAAGAAAA+AGG + tig0011086:19830-19849 None:intergenic 20.0%
!! CATAATCAATCTAAAGAATT+AGG + tig0011086:19918-19937 None:intergenic 20.0%
!! CAAAATTATGAATGAAAATG+AGG + tig0011086:20800-20819 None:intergenic 20.0%
!!! GAAAGAAGTGATTGTTTTAA+GGG + tig0011086:18167-18186 None:intergenic 25.0%
! ATTGTTGAGGAATATTGTTA+AGG - tig0011086:18778-18797 Msa1349860:CDS 25.0%
! ATGTTAAGTTTAGGAAGATT+AGG - tig0011086:18810-18829 Msa1349860:CDS 25.0%
! AAACTTGGTTGTATAAATAG+AGG - tig0011086:19223-19242 Msa1349860:intron 25.0%
! AACTTGGTTGTATAAATAGA+GGG - tig0011086:19224-19243 Msa1349860:intron 25.0%
! TTAAACCAACATACAAAAGT+TGG + tig0011086:19330-19349 None:intergenic 25.0%
! TTGCATAAAAGTAGAAAAGT+CGG - tig0011086:19517-19536 Msa1349860:intron 25.0%
! CAATATAGCTTATGAAAACA+GGG + tig0011086:19638-19657 None:intergenic 25.0%
!!! ATGTCATAAGCTATTTTCAT+AGG - tig0011086:19705-19724 Msa1349860:intron 25.0%
!!! CTTTGAGTATTTTAGTTTGA+TGG - tig0011086:19834-19853 Msa1349860:intron 25.0%
! GATACACAAGAACTATTATT+AGG - tig0011086:20156-20175 Msa1349860:CDS 25.0%
!!! CAAACGTAAATTGTTATTTG+GGG + tig0011086:20326-20345 None:intergenic 25.0%
!!! CCAAACGTAAATTGTTATTT+GGG + tig0011086:20327-20346 None:intergenic 25.0%
!! TCCAAACGTAAATTGTTATT+TGG + tig0011086:20328-20347 None:intergenic 25.0%
!!! TGCTTTAAAAGAATCATGTT+TGG - tig0011086:20468-20487 Msa1349860:CDS 25.0%
! AAAGAGAATAGTGAAAAGTA+AGG + tig0011086:20737-20756 None:intergenic 25.0%
!! CGAAAGAAGTGATTGTTTTA+AGG + tig0011086:18168-18187 None:intergenic 30.0%
TTGTTCTTCATAGTCGAAAA+TGG - tig0011086:18220-18239 Msa1349860:three_prime_UTR 30.0%
GATGTAAAAGACAAGATGAA+AGG - tig0011086:18245-18264 Msa1349860:three_prime_UTR 30.0%
AAGAAGAAGAAGAAGTGAAA+GGG + tig0011086:18292-18311 None:intergenic 30.0%
TCTTCTTCTGGTAAATTCAA+AGG - tig0011086:18308-18327 Msa1349860:exon 30.0%
TCTTCTCAAAGATCTCAAAA+TGG - tig0011086:18530-18549 Msa1349860:intron 30.0%
! CATCATCATCGTTTTCAATT+GGG + tig0011086:18649-18668 None:intergenic 30.0%
! TCATCATCATCGTTTTCAAT+TGG + tig0011086:18650-18669 None:intergenic 30.0%
TTCTGAGTCTAATACTGAAT+TGG - tig0011086:18691-18710 Msa1349860:intron 30.0%
ACTGAATTGGAGATTTCTAT+TGG - tig0011086:18704-18723 Msa1349860:intron 30.0%
TCTATTGGTACTTATGTTTC+AGG - tig0011086:18719-18738 Msa1349860:intron 30.0%
CTATTGGTACTTATGTTTCA+GGG - tig0011086:18720-18739 Msa1349860:intron 30.0%
AACCTGAGAATGTTAAGTTT+AGG - tig0011086:18801-18820 Msa1349860:CDS 30.0%
TTCCTAAACTTAACATTCTC+AGG + tig0011086:18806-18825 None:intergenic 30.0%
TAAGTTTAGGAAGATTAGGA+TGG - tig0011086:18814-18833 Msa1349860:CDS 30.0%
AAGTTTAGGAAGATTAGGAT+GGG - tig0011086:18815-18834 Msa1349860:CDS 30.0%
GTTAGGATTTGAACTTAAAG+AGG - tig0011086:18898-18917 Msa1349860:CDS 30.0%
TTTGAACTTAAAGAGGAGAA+CGG - tig0011086:18905-18924 Msa1349860:CDS 30.0%
GATCAAATTAACTTTCTCCT+CGG + tig0011086:18960-18979 None:intergenic 30.0%
!!! TCTGTCAATCTTTTTTGGTT+CGG + tig0011086:19080-19099 None:intergenic 30.0%
ACTTGGTTGTATAAATAGAG+GGG - tig0011086:19225-19244 Msa1349860:intron 30.0%
! TTTGTCCAACTTTTGTATGT+TGG - tig0011086:19322-19341 Msa1349860:intron 30.0%
TTAAATTTGGCTGTAATGCA+AGG - tig0011086:19346-19365 Msa1349860:intron 30.0%
TGCTTAAACCTTTACTTGAT+AGG + tig0011086:19415-19434 None:intergenic 30.0%
! CAAGGGTATACTTTGTTTAT+GGG - tig0011086:19560-19579 Msa1349860:intron 30.0%
CCAATATAGCTTATGAAAAC+AGG + tig0011086:19639-19658 None:intergenic 30.0%
! CCTGTTTTCATAAGCTATAT+TGG - tig0011086:19636-19655 Msa1349860:intron 30.0%
! CCTTATTTGAGTTTATCTAC+TGG + tig0011086:19761-19780 None:intergenic 30.0%
CCAGTAGATAAACTCAAATA+AGG - tig0011086:19758-19777 Msa1349860:intron 30.0%
TCAAATAAGGTAATCCAAAC+AGG - tig0011086:19771-19790 Msa1349860:intron 30.0%
! TTTTTCATAAAGAGCCTGTT+TGG + tig0011086:19788-19807 None:intergenic 30.0%
GATTCAAATTTACCTCTTTC+AGG - tig0011086:19950-19969 Msa1349860:CDS 30.0%
! GCTTTTCTTTAAGTGACTTT+GGG + tig0011086:20115-20134 None:intergenic 30.0%
! TGCTTTTCTTTAAGTGACTT+TGG + tig0011086:20116-20135 None:intergenic 30.0%
! ATTAGGATTCAGTTTTCAGA+TGG - tig0011086:20173-20192 Msa1349860:CDS 30.0%
TAACTTATGCCTTTCAATTG+TGG - tig0011086:20274-20293 Msa1349860:CDS 30.0%
GGTTAATTTCCACAATTGAA+AGG + tig0011086:20286-20305 None:intergenic 30.0%
CCCAAATAACAATTTACGTT+TGG - tig0011086:20324-20343 Msa1349860:CDS 30.0%
!! AACAACAGAATCTGTTTCTA+GGG + tig0011086:20620-20639 None:intergenic 30.0%
! AAACAACAGAATCTGTTTCT+AGG + tig0011086:20621-20640 None:intergenic 30.0%
AATGCTTAACCATTTACAAG+TGG + tig0011086:20682-20701 None:intergenic 30.0%
!!! CTCTTTTTTTTCCCCTTAAA+TGG - tig0011086:20751-20770 Msa1349860:exon 30.0%
!!! TTTTTTTTCCCCTTAAATGG+TGG - tig0011086:20754-20773 Msa1349860:exon 30.0%
!!! TTTTTTTCCCCTTAAATGGT+GGG - tig0011086:20755-20774 Msa1349860:exon 30.0%
GAATAGATGAAATAGAGAGG+GGG + tig0011086:18124-18143 None:intergenic 35.0%
GGAATAGATGAAATAGAGAG+GGG + tig0011086:18125-18144 None:intergenic 35.0%
CGGAATAGATGAAATAGAGA+GGG + tig0011086:18126-18145 None:intergenic 35.0%
ACGGAATAGATGAAATAGAG+AGG + tig0011086:18127-18146 None:intergenic 35.0%
GAAGAAGAAGAAGAAGTGAA+AGG + tig0011086:18293-18312 None:intergenic 35.0%
ACTTCTTCTTCTTCTTCTTC+TGG - tig0011086:18296-18315 Msa1349860:exon 35.0%
GAAGTGACGAATGAATCAAA+TGG + tig0011086:18512-18531 None:intergenic 35.0%
CGAAAGGGTTGTTTACAAAT+TGG + tig0011086:18581-18600 None:intergenic 35.0%
ATATCAACAGAACCTTCAGA+CGG + tig0011086:18749-18768 None:intergenic 35.0%
TCCAAAGATTAAAGAAGCTG+TGG - tig0011086:18841-18860 Msa1349860:CDS 35.0%
CCAAAGATTAAAGAAGCTGT+GGG - tig0011086:18842-18861 Msa1349860:CDS 35.0%
! GTTGAATTGCTGAGTTTGTT+AGG - tig0011086:18881-18900 Msa1349860:CDS 35.0%
AAATTAACTTTCTCCTCGGT+AGG + tig0011086:18956-18975 None:intergenic 35.0%
CAAGAAAGCAATTGTGTTGT+TGG - tig0011086:18979-18998 Msa1349860:CDS 35.0%
GGTGTTAAAGTTTCTCTCTT+TGG + tig0011086:19028-19047 None:intergenic 35.0%
ACCAAAAAAGATTGACAGAC+AGG - tig0011086:19081-19100 Msa1349860:intron 35.0%
!!! ACCTGTCTGTCAATCTTTTT+TGG + tig0011086:19085-19104 None:intergenic 35.0%
!! TTTTGCACAGTTTGAGACTA+GGG - tig0011086:19184-19203 Msa1349860:intron 35.0%
TGTTGGGAAGTAATTGTGTA+GGG - tig0011086:19267-19286 Msa1349860:intron 35.0%
TTACTTGATAGGATTGTGGA+TGG + tig0011086:19404-19423 None:intergenic 35.0%
TCCACAATCCTATCAAGTAA+AGG - tig0011086:19404-19423 Msa1349860:intron 35.0%
ACCTTTACTTGATAGGATTG+TGG + tig0011086:19408-19427 None:intergenic 35.0%
CTACTAAGCTGAAGAAGTTA+TGG - tig0011086:19438-19457 Msa1349860:intron 35.0%
CGTAGGGTGTAAATATACTT+GGG + tig0011086:19466-19485 None:intergenic 35.0%
TCGTAGGGTGTAAATATACT+TGG + tig0011086:19467-19486 None:intergenic 35.0%
ATTAGGATGAGTTTCTCGTA+GGG + tig0011086:19482-19501 None:intergenic 35.0%
TATTAGGATGAGTTTCTCGT+AGG + tig0011086:19483-19502 None:intergenic 35.0%
CCATAAACAAAGTATACCCT+TGG + tig0011086:19562-19581 None:intergenic 35.0%
! CCAAGGGTATACTTTGTTTA+TGG - tig0011086:19559-19578 Msa1349860:intron 35.0%
! AATTTACCTCTTTCAGGTGA+AGG - tig0011086:19956-19975 Msa1349860:CDS 35.0%
TGAGAAGAGAAGCTGAATTA+AGG - tig0011086:20057-20076 Msa1349860:CDS 35.0%
ACAGTAAGACACTAACACTT+GGG + tig0011086:20383-20402 None:intergenic 35.0%
AACAGTAAGACACTAACACT+TGG + tig0011086:20384-20403 None:intergenic 35.0%
TCTTACTGTTTATTCCGAGT+TGG - tig0011086:20394-20413 Msa1349860:CDS 35.0%
CACAAACTGCATTATCAACA+TGG + tig0011086:20443-20462 None:intergenic 35.0%
!! ACAACAGAATCTGTTTCTAG+GGG + tig0011086:20619-20638 None:intergenic 35.0%
!!! ACAGATTCTGTTGTTTTCAC+CGG - tig0011086:20625-20644 Msa1349860:CDS 35.0%
!!! CAGCAATTCATTTTTGAGAC+CGG + tig0011086:20647-20666 None:intergenic 35.0%
ATCAGTGAACCACTTGTAAA+TGG - tig0011086:20670-20689 Msa1349860:CDS 35.0%
!!! TTTTTTCCCCTTAAATGGTG+GGG - tig0011086:20756-20775 Msa1349860:exon 35.0%
TCTATATCCCCACCATTTAA+GGG + tig0011086:20766-20785 None:intergenic 35.0%
TCATGAATGTAGGTAGGAAT+TGG + tig0011086:20887-20906 None:intergenic 35.0%
AATTCCTACCTACATTCATG+AGG - tig0011086:20886-20905 Msa1349860:five_prime_UTR 35.0%
GGATAAGAAACAAACACGCA+CGG + tig0011086:18146-18165 None:intergenic 40.0%
TCTGGTAAATTCAAAGGCCA+AGG - tig0011086:18314-18333 Msa1349860:CDS 40.0%
! TAGGTTTGGGTTTGGGATTA+GGG + tig0011086:18424-18443 None:intergenic 40.0%
! TTGCTTTGATCTGAAGCGAT+CGG + tig0011086:18452-18471 None:intergenic 40.0%
AAATGGATCAAAGCCATCTG+CGG + tig0011086:18495-18514 None:intergenic 40.0%
CCCACAGCTTCTTTAATCTT+TGG + tig0011086:18845-18864 None:intergenic 40.0%
! TGTGTTGTTGGAACCACAAT+TGG - tig0011086:18991-19010 Msa1349860:CDS 40.0%
! GGAGTATCTTGAACCAATTG+TGG + tig0011086:19007-19026 None:intergenic 40.0%
!!! AATCTTTTTTGGTTCGGCCT+CGG + tig0011086:19074-19093 None:intergenic 40.0%
!! GTTTTGCACAGTTTGAGACT+AGG - tig0011086:19183-19202 Msa1349860:intron 40.0%
GAGACTAGGGCTTGAATATT+TGG - tig0011086:19197-19216 Msa1349860:intron 40.0%
TAGAGGGGAAAAGTAAACTG+TGG - tig0011086:19240-19259 Msa1349860:intron 40.0%
AGAGGGGAAAAGTAAACTGT+GGG - tig0011086:19241-19260 Msa1349860:intron 40.0%
AAGTAAACTGTGGGTTCTGT+TGG - tig0011086:19250-19269 Msa1349860:intron 40.0%
AGTAAACTGTGGGTTCTGTT+GGG - tig0011086:19251-19270 Msa1349860:intron 40.0%
CTGTTGGGAAGTAATTGTGT+AGG - tig0011086:19266-19285 Msa1349860:intron 40.0%
AGCTTATGAAAACAGGGTCA+TGG + tig0011086:19632-19651 None:intergenic 40.0%
AAGCAATTGTGAGACTGTTC+GGG + tig0011086:19735-19754 None:intergenic 40.0%
CAAGCAATTGTGAGACTGTT+CGG + tig0011086:19736-19755 None:intergenic 40.0%
TAATGACACACATGCTCTGT+GGG + tig0011086:19872-19891 None:intergenic 40.0%
TTAATGACACACATGCTCTG+TGG + tig0011086:19873-19892 None:intergenic 40.0%
GAACGTTTGTAGAAGGAATC+TGG + tig0011086:20026-20045 None:intergenic 40.0%
TTCAGCTGAACGTTTGTAGA+AGG + tig0011086:20033-20052 None:intergenic 40.0%
TCAGATGGAGTTGTACTTCA+AGG - tig0011086:20188-20207 Msa1349860:CDS 40.0%
TTCAAGGTGTATTTGCTCCA+TGG - tig0011086:20204-20223 Msa1349860:CDS 40.0%
TCAAGGTGTATTTGCTCCAT+GGG - tig0011086:20205-20224 Msa1349860:CDS 40.0%
! GGGGAACTTTTATGTCAGAA+CGG + tig0011086:20307-20326 None:intergenic 40.0%
TGCATCCTGTAGTTGTTCAA+CGG - tig0011086:20503-20522 Msa1349860:CDS 40.0%
GCAAAAAGCCAAAACGATAG+AGG - tig0011086:20555-20574 Msa1349860:CDS 40.0%
! GTCTTCTTCCTCTATCGTTT+TGG + tig0011086:20566-20585 None:intergenic 40.0%
TTGAACTTGATTAGGGCAGA+AGG + tig0011086:20595-20614 None:intergenic 40.0%
TAGGGGCTTGAACTTGATTA+GGG + tig0011086:20602-20621 None:intergenic 40.0%
CGGTCTCAAAAATGAATTGC+TGG - tig0011086:20645-20664 Msa1349860:CDS 40.0%
CTATATCCCCACCATTTAAG+GGG + tig0011086:20765-20784 None:intergenic 40.0%
GTCTATATCCCCACCATTTA+AGG + tig0011086:20767-20786 None:intergenic 40.0%
GTGGGGATATAGACACAATT+CGG - tig0011086:20773-20792 Msa1349860:five_prime_UTR 40.0%
ATTGCCTCATGAATGTAGGT+AGG + tig0011086:20893-20912 None:intergenic 40.0%
!! TTGGGATTAGGGTTCTGAGA+AGG + tig0011086:18413-18432 None:intergenic 45.0%
! GTAGGTTTGGGTTTGGGATT+AGG + tig0011086:18425-18444 None:intergenic 45.0%
AATGGATCAAAGCCATCTGC+GGG + tig0011086:18494-18513 None:intergenic 45.0%
TAAACAACCCTTTCGATCCG+AGG - tig0011086:18586-18605 Msa1349860:intron 45.0%
ACTTTCTCAGCGGAAATGGT+AGG + tig0011086:19049-19068 None:intergenic 45.0%
GGGAAGTAATTGTGTAGGGT+TGG - tig0011086:19271-19290 Msa1349860:intron 45.0%
AGAAGACCTTCACCTGAAAG+AGG + tig0011086:19965-19984 None:intergenic 45.0%
CTACAAACGTTCAGCTGAAG+AGG - tig0011086:20034-20053 Msa1349860:CDS 45.0%
ACCAACTACTGCTCTGTATG+AGG - tig0011086:20229-20248 Msa1349860:CDS 45.0%
ACCTCATACAGAGCAGTAGT+TGG + tig0011086:20233-20252 None:intergenic 45.0%
ACAATGCTGAGTTGCCAACT+CGG + tig0011086:20411-20430 None:intergenic 45.0%
ATCCCATGTTTCCCAAAAGC+AGG - tig0011086:20532-20551 Msa1349860:CDS 45.0%
TCCCATGTTTCCCAAAAGCA+GGG - tig0011086:20533-20552 Msa1349860:CDS 45.0%
!! TGGCTTTTTGCCCTGCTTTT+GGG + tig0011086:20546-20565 None:intergenic 45.0%
!! TTGGCTTTTTGCCCTGCTTT+TGG + tig0011086:20547-20566 None:intergenic 45.0%
AACGATAGAGGAAGAAGACC+TGG - tig0011086:20567-20586 Msa1349860:CDS 45.0%
CTAGGGGCTTGAACTTGATT+AGG + tig0011086:20603-20622 None:intergenic 45.0%
AAAGGCCAAGGTCGAGTCTT+GGG - tig0011086:18326-18345 Msa1349860:CDS 50.0%
AAGAACCCAAGACTCGACCT+TGG + tig0011086:18334-18353 None:intergenic 50.0%
GGGGTAGGAATGGAATTTGC+AGG + tig0011086:18380-18399 None:intergenic 50.0%
!! TAGGGTTCTGAGAAGGACGA+GGG + tig0011086:18406-18425 None:intergenic 50.0%
!! TTAGGGTTCTGAGAAGGACG+AGG + tig0011086:18407-18426 None:intergenic 50.0%
! GGTGGAGTAGGTTTGGGTTT+GGG + tig0011086:18431-18450 None:intergenic 50.0%
! CTTTGATCTGAAGCGATCGG+TGG + tig0011086:18449-18468 None:intergenic 50.0%
GTGTTCAGAAACCTCGTCCT+CGG + tig0011086:18606-18625 None:intergenic 50.0%
GTTTCAGGGAATCCGTCTGA+AGG - tig0011086:18734-18753 Msa1349860:intron 50.0%
GATTAAAGAAGCTGTGGGCG+AGG - tig0011086:18847-18866 Msa1349860:CDS 50.0%
AAGAGGAGAACGGAGAGACA+TGG - tig0011086:18915-18934 Msa1349860:CDS 50.0%
AGAGGAGAACGGAGAGACAT+GGG - tig0011086:18916-18935 Msa1349860:CDS 50.0%
AGAGACATGGGCATTCATGG+AGG - tig0011086:18928-18947 Msa1349860:CDS 50.0%
ATTCATGGAGGTTCCTACCG+AGG - tig0011086:18940-18959 Msa1349860:CDS 50.0%
! GGCTACTTTCTCAGCGGAAA+TGG + tig0011086:19053-19072 None:intergenic 50.0%
! AGAGCAGTAGTTGGTTCCCA+TGG + tig0011086:20224-20243 None:intergenic 50.0%
ACACGCCGTTGAACAACTAC+AGG + tig0011086:20511-20530 None:intergenic 50.0%
!! GCCCTGCTTTTGGGAAACAT+GGG + tig0011086:20537-20556 None:intergenic 50.0%
!! TGCCCTGCTTTTGGGAAACA+TGG + tig0011086:20538-20557 None:intergenic 50.0%
CAAAGGCCAAGGTCGAGTCT+TGG - tig0011086:18325-18344 Msa1349860:CDS 55.0%
TCTGAGAAGGACGAGGGGTA+GGG + tig0011086:18400-18419 None:intergenic 55.0%
! TTCTGAGAAGGACGAGGGGT+AGG + tig0011086:18401-18420 None:intergenic 55.0%
!! AGGGTTCTGAGAAGGACGAG+GGG + tig0011086:18405-18424 None:intergenic 55.0%
! CGGTGGAGTAGGTTTGGGTT+TGG + tig0011086:18432-18451 None:intergenic 55.0%
GCGATCGGTGGAGTAGGTTT+GGG + tig0011086:18437-18456 None:intergenic 55.0%
AGCGATCGGTGGAGTAGGTT+TGG + tig0011086:18438-18457 None:intergenic 55.0%
! TCTGAAGCGATCGGTGGAGT+AGG + tig0011086:18443-18462 None:intergenic 55.0%
AAACCACGCAAACCCGCAGA+TGG - tig0011086:18479-18498 Msa1349860:CDS 55.0%
ACCTCGTCCTCGGATCGAAA+GGG + tig0011086:18596-18615 None:intergenic 55.0%
AACCTCGTCCTCGGATCGAA+AGG + tig0011086:18597-18616 None:intergenic 55.0%
GGACGAGGTTTCTGAACACG+TGG - tig0011086:18607-18626 Msa1349860:intron 55.0%
GAAGCTGTGGGCGAGGTTAT+TGG - tig0011086:18854-18873 Msa1349860:CDS 55.0%
CGGAGAGACATGGGCATTCA+TGG - tig0011086:18925-18944 Msa1349860:CDS 55.0%
TTCCGCTGAGAAAGTAGCCG+AGG - tig0011086:19054-19073 Msa1349860:intron 55.0%
!! TGATTAGGGCAGAAGGCACC+AGG + tig0011086:20588-20607 None:intergenic 55.0%
ACGAGGGGTAGGGGTAGGAA+TGG + tig0011086:18390-18409 None:intergenic 60.0%
CTGAGAAGGACGAGGGGTAG+GGG + tig0011086:18399-18418 None:intergenic 60.0%
AAGCCATCTGCGGGTTTGCG+TGG + tig0011086:18485-18504 None:intergenic 60.0%
ACCCTTTCGATCCGAGGACG+AGG - tig0011086:18592-18611 Msa1349860:intron 60.0%
GCTGTGGGCGAGGTTATTGG+TGG - tig0011086:18857-18876 Msa1349860:CDS 60.0%
! GGCCTCGGCTACTTTCTCAG+CGG + tig0011086:19059-19078 None:intergenic 60.0%
GAAGGACGAGGGGTAGGGGT+AGG + tig0011086:18395-18414 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0011086 gene 18091 20914 18091 ID=Msa1349860;Name=Msa1349860
tig0011086 mRNA 18091 20914 18091 ID=Msa1349860-mRNA-1;Parent=Msa1349860;Name=Msa1349860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=148|1|1|1|1|1|3|218|460
tig0011086 exon 18091 18548 18091 ID=Msa1349860-mRNA-1:exon:7171;Parent=Msa1349860-mRNA-1
tig0011086 exon 18755 19033 18755 ID=Msa1349860-mRNA-1:exon:7170;Parent=Msa1349860-mRNA-1
tig0011086 exon 19903 20914 19903 ID=Msa1349860-mRNA-1:exon:7169;Parent=Msa1349860-mRNA-1
tig0011086 five_prime_UTR 20767 20914 20767 ID=Msa1349860-mRNA-1:five_prime_utr;Parent=Msa1349860-mRNA-1
tig0011086 CDS 19903 20766 19903 ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1
tig0011086 CDS 18755 19033 18755 ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1
tig0011086 CDS 18309 18548 18309 ID=Msa1349860-mRNA-1:cds;Parent=Msa1349860-mRNA-1
tig0011086 three_prime_UTR 18091 18308 18091 ID=Msa1349860-mRNA-1:three_prime_utr;Parent=Msa1349860-mRNA-1
Gene Sequence

>Msa1349860

ATGGACGATGTAAAAGACAAGATGAAAGGATTCATCAAGAAAGTTAACAACCCTTTCACTTCTTCTTCTTCTTCTTCTGGTAAATTCAAAGGCCAAGGTCGAGTCTTGGGTTCTTCTTCTTCTTCTTCTTCTTCTACACCTGCAAATTCCATTCCTACCCCTACCCCTCGTCCTTCTCAGAACCCTAATCCCAAACCCAAACCTACTCCACCGATCGCTTCAGATCAAAGCAAAATCGATAAACCACGCAAACCCGCAGATGGCTTTGATCCATTTGATTCATTCGTCACTTCTTCTCAAAGATCTCAAAATGGCTATTCACTCAACGTATATGAATGTCCAATTTGTAAACAACCCTTTCGATCCGAGGACGAGGTTTCTGAACACGTGGAATCTTGTTTGAGTAACCCAATTGAAAACGATGATGATGAAAAATTGAAAGAGAGTCAAGTTTCTGAGTCTAATACTGAATTGGAGATTTCTATTGGTACTTATGTTTCAGGGAATCCGTCTGAAGGTTCTGTTGATATTGTTCTTAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGGGTAATCCAAAGATTAAAGAAGCTGTGGGCGAGGTTATTGGTGGTGTTGAATTGCTGAGTTTGTTAGGATTTGAACTTAAAGAGGAGAACGGAGAGACATGGGCATTCATGGAGGTTCCTACCGAGGAGAAAGTTAATTTGATCAAGAAAGCAATTGTGTTGTTGGAACCACAATTGGTTCAAGATACTCCAAAGAGAGAAACTTTAACACCTACCATTTCCGCTGAGAAAGTAGCCGAGGCCGAACCAAAAAAGATTGACAGACAGGTGAAGGTCTTCTTTGCTGTCTCTGAAAGTGTTGCAGCTAGAATTGAGCTACCAGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATCCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCGAAGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTTCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTCTGTATGAGTTTGTGAGCTCTGCTTTAAAAGAATCATGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTTCAACGGCGTGTAATCCCATGTTTCCCAAAAGCAGGGCAAAAAGCCAAAACGATAGAGGAAGAAGACCTGGTGCCTTCTGCCCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTGGAAATCAGTGAACCACTTGTAAATGGTTAA

Protein sequence

>Msa1349860

MDDVKDKMKGFIKKVNNPFTSSSSSSGKFKGQGRVLGSSSSSSSSTPANSIPTPTPRPSQNPNPKPKPTPPIASDQSKIDKPRKPADGFDPFDSFVTSSQRSQNGYSLNVYECPICKQPFRSEDEVSEHVESCLSNPIENDDDEKLKESQVSESNTELEISIGTYVSGNPSEGSVDIVLKLLRNIVKEPENVKFRKIRMGNPKIKEAVGEVIGGVELLSLLGFELKEENGETWAFMEVPTEEKVNLIKKAIVLLEPQLVQDTPKRETLTPTISAEKVAEAEPKKIDRQVKVFFAVSESVAARIELPDSFYKRSAEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTRTIIRIQFSDGVVLQGVFAPWEPTTALYEFVSSALKESCLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG*