Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162870 | XP_013441806.1 | 88.846 | 260 | 6 | 1 | 1 | 237 | 1 | 260 | 2.33e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162870 | sp|Q54GN8|NSA2_DICDI | 64.615 | 260 | 69 | 1 | 1 | 237 | 1 | 260 | 1.29e-118 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162870 | A0A072TF50 | 88.846 | 260 | 6 | 1 | 1 | 237 | 1 | 260 | 1.12e-163 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162870 | Msa0601130 | 0.821459 | 3.991907e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162870 | MtrunA17_Chr1g0177701 | 88.846 | 260 | 6 | 1 | 1 | 237 | 1 | 260 | 2.15e-167 | 462 |
| Msa0162870 | MtrunA17_Chr3g0125641 | 83.077 | 260 | 21 | 1 | 1 | 237 | 1 | 260 | 4.44e-152 | 423 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0162870 | AT5G06360.1 | 78.846 | 260 | 32 | 1 | 1 | 237 | 1 | 260 | 3.50e-150 | 419 |
Find 90 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTATTGTTCTGTTTATT+TGG | 0.106001 | 1_4:-40434779 | Msa0162870:three_prime_UTR |
| ACATTCAATCTTGAAATTAT+TGG | 0.186081 | 1_4:-40435738 | Msa0162870:CDS |
| AGCTGTTCCTGCTTATCTTT+TGG | 0.213713 | 1_4:-40436817 | Msa0162870:CDS |
| TCAAGTATGGGAGGCGGCTT+AGG | 0.277832 | 1_4:+40438393 | None:intergenic |
| GACCGTCACATAAAAGAAAA+TGG | 0.314189 | 1_4:-40437376 | Msa0162870:CDS |
| AGCCTCTCTCTTGCGCTTGC+GGG | 0.318070 | 1_4:+40437333 | None:intergenic |
| TATAAATCTGTCAGATTCAT+TGG | 0.319614 | 1_4:+40434707 | None:intergenic |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.331661 | 1_4:+40435013 | None:intergenic |
| GAAACAGACTATTGGTCTTA+AGG | 0.339662 | 1_4:-40437164 | Msa0162870:intron |
| GAGGTGTACATGGGGCCATT+AGG | 0.355093 | 1_4:+40435702 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 1_4:+40435753 | None:intergenic |
| GTCGAGAAGCTACTCTCGTT+GGG | 0.361027 | 1_4:+40438365 | None:intergenic |
| CAGGTGAATGTTAGCGAACT+TGG | 0.365974 | 1_4:-40435167 | Msa0162870:CDS |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 1_4:-40435683 | Msa0162870:CDS |
| GGTTCACAACCACTCTAAAA+AGG | 0.386198 | 1_4:-40437305 | Msa0162870:CDS |
| ATTCAAGTGAAACAGACTAT+TGG | 0.387024 | 1_4:-40437172 | Msa0162870:intron |
| AGGTGTACATGGGGCCATTA+GGG | 0.387835 | 1_4:+40435703 | None:intergenic |
| TTATTTCTTCTTGCACTTGA+AGG | 0.391906 | 1_4:-40434740 | Msa0162870:three_prime_UTR |
| AAACAGACTATTGGTCTTAA+GGG | 0.408363 | 1_4:-40437163 | Msa0162870:intron |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.409405 | 1_4:+40435014 | None:intergenic |
| CGAATGAATCGCTCATACTT+TGG | 0.413112 | 1_4:+40435816 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 1_4:-40436844 | Msa0162870:CDS |
| GAATGTTAGCGAACTTGGTT+TGG | 0.420005 | 1_4:-40435162 | Msa0162870:CDS |
| TTGAGTACCTTGGTGTTAAA+CGG | 0.420705 | 1_4:+40438311 | None:intergenic |
| AAACTAGTTCAGTTTATAAC+GGG | 0.426344 | 1_4:+40437599 | None:intergenic |
| GGAAAAGGGTTAAACCTTCT+GGG | 0.431363 | 1_4:+40437282 | None:intergenic |
| GTTACAAAAGCAACATTTGT+TGG | 0.433060 | 1_4:-40435861 | Msa0162870:CDS |
| CTTGGTTTGGTTACACCTGC+AGG | 0.433801 | 1_4:-40435149 | Msa0162870:CDS |
| AAAACTAGTTCAGTTTATAA+CGG | 0.449796 | 1_4:+40437598 | None:intergenic |
| TTACAAAAGCAACATTTGTT+GGG | 0.454651 | 1_4:-40435860 | Msa0162870:CDS |
| GGCCCCATGTACACCTCTCT+TGG | 0.465138 | 1_4:-40435696 | Msa0162870:CDS |
| GGTGTTAAACGGTGGCAGTC+TGG | 0.468442 | 1_4:+40438322 | None:intergenic |
| GAGCCTCTCTCTTGCGCTTG+CGG | 0.475580 | 1_4:+40437332 | None:intergenic |
| AGACAAAATCTTAGGTATCA+AGG | 0.477192 | 1_4:+40434853 | None:intergenic |
| AAAGCAACATTTGTTGGGCC+TGG | 0.494371 | 1_4:-40435855 | Msa0162870:CDS |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 1_4:+40436351 | None:intergenic |
| CAAGTATGGGAGGCGGCTTA+GGG | 0.498970 | 1_4:+40438394 | None:intergenic |
| TTCCACAACATGACAGTGTC+CGG | 0.500060 | 1_4:+40434801 | None:intergenic |
| GAGCGATTCATTCGTCCCAC+TGG | 0.500866 | 1_4:-40435807 | Msa0162870:CDS |
| ATGAATCGCTCATACTTTGG+TGG | 0.502666 | 1_4:+40435819 | None:intergenic |
| TGTCGAGAAGCTACTCTCGT+TGG | 0.503204 | 1_4:+40438364 | None:intergenic |
| CCCCACACAACTTTCCCTGC+AGG | 0.510551 | 1_4:+40435134 | None:intergenic |
| TCACGATCCAAAAGATAAGC+AGG | 0.510830 | 1_4:+40436810 | None:intergenic |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 1_4:+40435665 | None:intergenic |
| ACCTGCAGGGAAAGTTGTGT+GGG | 0.521487 | 1_4:-40435135 | Msa0162870:CDS |
| GGGGATTCAAGTATGGGAGG+CGG | 0.522070 | 1_4:+40438387 | None:intergenic |
| GACACCAAGAGAGGTGTACA+TGG | 0.523657 | 1_4:+40435692 | None:intergenic |
| TGCGGGTTTCGTGATCGAAA+CGG | 0.524765 | 1_4:+40437350 | None:intergenic |
| CTATTGGTCTTAAGGGAAAG+AGG | 0.536215 | 1_4:-40437156 | Msa0162870:CDS |
| GCACGACCATACCTTTGCTC+TGG | 0.540809 | 1_4:+40436779 | None:intergenic |
| CACCTGCAGGGAAAGTTGTG+TGG | 0.542031 | 1_4:-40435136 | Msa0162870:CDS |
| TTTAAGGTCAGATCGAGCAT+TGG | 0.550320 | 1_4:-40434960 | Msa0162870:exon |
| AACCCGCAAGCGCAAGAGAG+AGG | 0.557787 | 1_4:-40437335 | Msa0162870:CDS |
| ATAACGGGACTCTTTCGCCT+CGG | 0.563585 | 1_4:+40437614 | None:intergenic |
| AAGGTCAGATCGAGCATTGG+AGG | 0.565790 | 1_4:-40434957 | Msa0162870:three_prime_UTR |
| ATTTCCTCAGGTACGTCCTG+TGG | 0.566309 | 1_4:-40436367 | Msa0162870:intron |
| TCGAGAAGCTACTCTCGTTG+GGG | 0.570830 | 1_4:+40438366 | None:intergenic |
| GCGCAAGAGAGAGGCTCGTG+AGG | 0.578621 | 1_4:-40437326 | Msa0162870:CDS |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 1_4:-40436333 | Msa0162870:CDS |
| TTCCAGTGGTATTGAAGGTG+TGG | 0.581269 | 1_4:-40437659 | Msa0162870:intron |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 1_4:-40435667 | Msa0162870:intron |
| AGCTAAGCAATGGAAGAGAA+TGG | 0.593298 | 1_4:-40435883 | Msa0162870:CDS |
| ACCAACAACCCAGAAAATGA+TGG | 0.595399 | 1_4:-40435006 | Msa0162870:CDS |
| TTGGTTTGGTTACACCTGCA+GGG | 0.596442 | 1_4:-40435148 | Msa0162870:CDS |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 1_4:-40435682 | Msa0162870:CDS |
| GAATGCAGGTAAATACGCCC+AGG | 0.601372 | 1_4:-40435031 | Msa0162870:intron |
| CATCGAATGTTTGACAGTGG+CGG | 0.605930 | 1_4:+40434887 | None:intergenic |
| CGAGAAGCTACTCTCGTTGG+GGG | 0.607653 | 1_4:+40438367 | None:intergenic |
| TTTCATCGAATGTTTGACAG+TGG | 0.618780 | 1_4:+40434884 | None:intergenic |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 1_4:-40435681 | Msa0162870:CDS |
| TGCATGAAGAGTCAACATCT+AGG | 0.620336 | 1_4:-40436869 | Msa0162870:CDS |
| ATCCGGACACTGTCATGTTG+TGG | 0.622174 | 1_4:-40434803 | Msa0162870:three_prime_UTR |
| GTTAAACGGTGGCAGTCTGG+CGG | 0.629453 | 1_4:+40438325 | None:intergenic |
| ACACCAAGAGAGGTGTACAT+GGG | 0.632419 | 1_4:+40435693 | None:intergenic |
| TTTAGTGAAACGCAATCCAG+TGG | 0.635182 | 1_4:+40435791 | None:intergenic |
| TGAAAACACGACCAGAGCAA+AGG | 0.642977 | 1_4:-40436790 | Msa0162870:intron |
| TTGCACTTGAAGGTAACTAG+TGG | 0.649988 | 1_4:-40434730 | Msa0162870:three_prime_UTR |
| AGAGTCAACATCTAGGCGCA+AGG | 0.652247 | 1_4:-40436862 | Msa0162870:CDS |
| GCTGATGATAATGTTCAGGA+AGG | 0.654350 | 1_4:-40436840 | Msa0162870:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 1_4:+40435683 | None:intergenic |
| CAACACATGCTATAAAGCCG+AGG | 0.665525 | 1_4:-40437631 | Msa0162870:five_prime_UTR |
| GAGAAGCTACTCTCGTTGGG+GGG | 0.670279 | 1_4:+40438368 | None:intergenic |
| TTAGTGAAACGCAATCCAGT+GGG | 0.670436 | 1_4:+40435792 | None:intergenic |
| CGGTCTATATGATCTCCTTG+AGG | 0.680493 | 1_4:+40437394 | None:intergenic |
| CACCAAGAGAGGTGTACATG+GGG | 0.684428 | 1_4:+40435694 | None:intergenic |
| AGTACCTTGGTGTTAAACGG+TGG | 0.687544 | 1_4:+40438314 | None:intergenic |
| GGGTTTCGTGATCGAAACGG+CGG | 0.704227 | 1_4:+40437353 | None:intergenic |
| ACTGCCACCGTTTAACACCA+AGG | 0.704788 | 1_4:-40438318 | Msa0162870:intron |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 1_4:-40436343 | Msa0162870:CDS |
| CCTGCAGGGAAAGTTGTGTG+GGG | 0.734788 | 1_4:-40435134 | Msa0162870:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTATTTCTTAATTAT+AGG | - | chr1_4:40436101-40436120 | Msa0162870:intron | 10.0% |
| !!! | AAATCTAAAATCAAATTTTG+TGG | - | chr1_4:40434045-40434064 | Msa0162870:intron | 15.0% |
| !!! | ATTTTGTGGTTTTTATAATT+TGG | - | chr1_4:40434059-40434078 | Msa0162870:intron | 15.0% |
| !!! | CAATCTTTTAAAATTATAAC+CGG | - | chr1_4:40434323-40434342 | Msa0162870:intron | 15.0% |
| !!! | AATCTTTTAAAATTATAACC+GGG | - | chr1_4:40434324-40434343 | Msa0162870:intron | 15.0% |
| !!! | TAAGAAATAAACATATTTTC+TGG | + | chr1_4:40436096-40436115 | None:intergenic | 15.0% |
| !! | TATTCTATAAGCAATTAATA+AGG | - | chr1_4:40436922-40436941 | Msa0162870:intron | 15.0% |
| !!! | TAGATTGCAATTTTTAAATA+TGG | - | chr1_4:40438205-40438224 | Msa0162870:intron | 15.0% |
| !! | ATTCGATAAATTTGAAGATT+AGG | + | chr1_4:40433982-40434001 | None:intergenic | 20.0% |
| !!! | TTAAAATTACATTTTTCCAG+TGG | - | chr1_4:40434549-40434568 | Msa0162870:intron | 20.0% |
| !! | AAAACTAGTTCAGTTTATAA+CGG | + | chr1_4:40434627-40434646 | None:intergenic | 20.0% |
| !! | GCATAAAATGTTAAAGTAAT+TGG | + | chr1_4:40434991-40435010 | None:intergenic | 20.0% |
| !! | TATATTGTCATAAATCTAAC+TGG | - | chr1_4:40435016-40435035 | Msa0162870:CDS | 20.0% |
| !! | ATATTGTCATAAATCTAACT+GGG | - | chr1_4:40435017-40435036 | Msa0162870:CDS | 20.0% |
| !! | TGTTATATTTCATGTGTTTA+TGG | - | chr1_4:40435170-40435189 | Msa0162870:intron | 20.0% |
| !!! | TAAGTAAGTTTTGATAGATA+TGG | - | chr1_4:40435271-40435290 | Msa0162870:intron | 20.0% |
| !! | ACGTTATTATAACTCAAAAA+AGG | + | chr1_4:40435819-40435838 | None:intergenic | 20.0% |
| !! | TATTGTTAGTATCAAATTCA+TGG | - | chr1_4:40435992-40436011 | Msa0162870:intron | 20.0% |
| !!! | TTTTGATGTTATCATATGAT+GGG | - | chr1_4:40436183-40436202 | Msa0162870:intron | 20.0% |
| !! | ACATTCAATCTTGAAATTAT+TGG | - | chr1_4:40436484-40436503 | Msa0162870:intron | 20.0% |
| !! | AAAACAACTTAGAACTTATA+TGG | - | chr1_4:40436828-40436847 | Msa0162870:CDS | 20.0% |
| !! | ATTATTTGGCACTTATATAT+TGG | - | chr1_4:40437115-40437134 | Msa0162870:CDS | 20.0% |
| !! | ATACTATTGTTCTGTTTATT+TGG | - | chr1_4:40437443-40437462 | Msa0162870:intron | 20.0% |
| !!! | ATTGTATGAAACATTTTAAG+TGG | - | chr1_4:40437553-40437572 | Msa0162870:exon | 20.0% |
| !! | AATGAAATTATTTACCACAT+TGG | - | chr1_4:40438028-40438047 | Msa0162870:intron | 20.0% |
| !! | GATAAATGATGAACTAATAA+TGG | + | chr1_4:40438179-40438198 | None:intergenic | 20.0% |
| !! | TTTTTATAATTTGGACCGTT+TGG | - | chr1_4:40434068-40434087 | Msa0162870:intron | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | + | chr1_4:40434086-40434105 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGAGCTTATGAA+CGG | - | chr1_4:40434096-40434115 | Msa0162870:intron | 25.0% |
| ! | TAAGCTGCATAAACTATAAA+GGG | + | chr1_4:40434140-40434159 | None:intergenic | 25.0% |
| ! | ATAATAGAATGTAACCACAT+GGG | + | chr1_4:40434302-40434321 | None:intergenic | 25.0% |
| ! | AAACTAGTTCAGTTTATAAC+GGG | + | chr1_4:40434626-40434645 | None:intergenic | 25.0% |
| !!! | AACTAGTTTTGTGTTTTTAC+TGG | - | chr1_4:40434637-40434656 | Msa0162870:intron | 25.0% |
| ! | ATAAACATCATCAAATGAAG+GGG | + | chr1_4:40434712-40434731 | None:intergenic | 25.0% |
| ! | CATAAACATCATCAAATGAA+GGG | + | chr1_4:40434713-40434732 | None:intergenic | 25.0% |
| ! | ACATAAACATCATCAAATGA+AGG | + | chr1_4:40434714-40434733 | None:intergenic | 25.0% |
| !!! | TTACATCCCTATTTTGATTT+TGG | - | chr1_4:40434775-40434794 | Msa0162870:three_prime_UTR | 25.0% |
| ! | ACGAAACCAAAATCAAAATA+GGG | + | chr1_4:40434784-40434803 | None:intergenic | 25.0% |
| !!! | TTTTTCGGCATAATTTTTCT+TGG | + | chr1_4:40435096-40435115 | None:intergenic | 25.0% |
| !! | TTAGTGTATTCAAGAGTTTT+TGG | - | chr1_4:40435234-40435253 | Msa0162870:intron | 25.0% |
| ! | TTTGATAGATATGGATTTGT+CGG | - | chr1_4:40435280-40435299 | Msa0162870:intron | 25.0% |
| ! | AAGAAAAACAAATACAGAGT+GGG | + | chr1_4:40435757-40435776 | None:intergenic | 25.0% |
| ! | AAAGAAAAACAAATACAGAG+TGG | + | chr1_4:40435758-40435777 | None:intergenic | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr1_4:40435911-40435930 | None:intergenic | 25.0% |
| ! | AAGAGTAAGTATTACATCTA+TGG | - | chr1_4:40435919-40435938 | Msa0162870:intron | 25.0% |
| !!! | GTTTTGATGTTATCATATGA+TGG | - | chr1_4:40436182-40436201 | Msa0162870:intron | 25.0% |
| ! | AATACATTGTAAGCACATTA+CGG | - | chr1_4:40436247-40436266 | Msa0162870:intron | 25.0% |
| ! | TTACAAAAGCAACATTTGTT+GGG | - | chr1_4:40436362-40436381 | Msa0162870:intron | 25.0% |
| ! | ATTTCATGCACTTATAATTG+AGG | - | chr1_4:40436585-40436604 | Msa0162870:intron | 25.0% |
| !!! | AAATATAGCTTTAGTCTGTT+TGG | - | chr1_4:40436696-40436715 | Msa0162870:intron | 25.0% |
| !!! | ATATATTGGTTTCATCATCA+TGG | - | chr1_4:40437129-40437148 | Msa0162870:CDS | 25.0% |
| ! | TTTAACTGATATTGATGCAT+TGG | - | chr1_4:40437158-40437177 | Msa0162870:CDS | 25.0% |
| !! | TTGGATTTTTATATGAATGC+AGG | - | chr1_4:40437177-40437196 | Msa0162870:intron | 25.0% |
| !!! | AATGCTGTTTTACTTGTTTA+AGG | - | chr1_4:40437246-40437265 | Msa0162870:intron | 25.0% |
| !! | AATGGCAAAGAATTTTTGTT+TGG | - | chr1_4:40437396-40437415 | Msa0162870:CDS | 25.0% |
| !!! | AAAGAATTTTTGTTTGGATC+CGG | - | chr1_4:40437402-40437421 | Msa0162870:intron | 25.0% |
| ! | TATAAATCTGTCAGATTCAT+TGG | + | chr1_4:40437518-40437537 | None:intergenic | 25.0% |
| ! | TTCATATACCAAAACAAACT+CGG | - | chr1_4:40437697-40437716 | Msa0162870:intron | 25.0% |
| !!! | TCGGGTTTAAAATATTTTGA+GGG | - | chr1_4:40437716-40437735 | Msa0162870:intron | 25.0% |
| !!! | AAAATGCTCTTTTGAGAAAA+TGG | - | chr1_4:40437760-40437779 | Msa0162870:intron | 25.0% |
| ! | TAAAAGATGAAAATACCCAT+CGG | + | chr1_4:40437938-40437957 | None:intergenic | 25.0% |
| ! | TAATTTCATTCCTCTTGAAA+CGG | + | chr1_4:40438018-40438037 | None:intergenic | 25.0% |
| TAGAATTCCAATAACAAGAG+AGG | + | chr1_4:40434026-40434045 | None:intergenic | 30.0% | |
| CTAAGCTGCATAAACTATAA+AGG | + | chr1_4:40434141-40434160 | None:intergenic | 30.0% | |
| CATAATAGAATGTAACCACA+TGG | + | chr1_4:40434303-40434322 | None:intergenic | 30.0% | |
| !!! | TTCGACAGTTTCACATTTTT+TGG | - | chr1_4:40434467-40434486 | Msa0162870:intron | 30.0% |
| !! | TTGTGTTTTTACTGGTTACT+TGG | - | chr1_4:40434645-40434664 | Msa0162870:intron | 30.0% |
| !! | TCATTTTCAAGAGACAACAA+TGG | - | chr1_4:40434671-40434690 | Msa0162870:intron | 30.0% |
| ACAGTAACAGAAAATTCTTG+AGG | + | chr1_4:40434747-40434766 | None:intergenic | 30.0% | |
| GACGAAACCAAAATCAAAAT+AGG | + | chr1_4:40434785-40434804 | None:intergenic | 30.0% | |
| !! | TTTGTATCATTTTAGCCTCA+AGG | - | chr1_4:40434813-40434832 | Msa0162870:three_prime_UTR | 30.0% |
| ATTCAAGTGAAACAGACTAT+TGG | - | chr1_4:40435050-40435069 | Msa0162870:intron | 30.0% | |
| !! | AAACAGACTATTGGTCTTAA+GGG | - | chr1_4:40435059-40435078 | Msa0162870:intron | 30.0% |
| !!! | NTCCTTCCTTTTTTGCTTAA+TGG | + | chr1_4:40435562-40435581 | None:intergenic | 30.0% |
| ! | ATGTGTATTTTCATTTCCTC+AGG | - | chr1_4:40435843-40435862 | Msa0162870:CDS | 30.0% |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr1_4:40435879-40435898 | Msa0162870:CDS | 30.0% | |
| ! | GGCTTCTAGTATTATGATTT+TGG | - | chr1_4:40435940-40435959 | Msa0162870:intron | 30.0% |
| ATTTCAATCATGTCATCACA+TGG | + | chr1_4:40435968-40435987 | None:intergenic | 30.0% | |
| ATGTGATGACATGATTGAAA+TGG | - | chr1_4:40435967-40435986 | Msa0162870:intron | 30.0% | |
| TGTGATGACATGATTGAAAT+GGG | - | chr1_4:40435968-40435987 | Msa0162870:intron | 30.0% | |
| CTACATCCATAAACAAAAAG+GGG | + | chr1_4:40436073-40436092 | None:intergenic | 30.0% | |
| GCTACATCCATAAACAAAAA+GGG | + | chr1_4:40436074-40436093 | None:intergenic | 30.0% | |
| ! | TTGAGATGCTGAAATTTTTG+TGG | - | chr1_4:40436124-40436143 | Msa0162870:intron | 30.0% |
| ! | TGAGATGCTGAAATTTTTGT+GGG | - | chr1_4:40436125-40436144 | Msa0162870:intron | 30.0% |
| AAAACACAATGACTTAGAGT+TGG | + | chr1_4:40436167-40436186 | None:intergenic | 30.0% | |
| ATACATTGTAAGCACATTAC+GGG | - | chr1_4:40436248-40436267 | Msa0162870:intron | 30.0% | |
| ATCAATATGCATGCAATCTA+AGG | + | chr1_4:40436275-40436294 | None:intergenic | 30.0% | |
| GTTACAAAAGCAACATTTGT+TGG | - | chr1_4:40436361-40436380 | Msa0162870:intron | 30.0% | |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr1_4:40436472-40436491 | None:intergenic | 30.0% |
| ! | TTTTCCGTTCTCACAATTTA+AGG | - | chr1_4:40436615-40436634 | Msa0162870:intron | 30.0% |
| !! | GTTGTTTTCATAATCTATCC+TGG | + | chr1_4:40436816-40436835 | None:intergenic | 30.0% |
| AGTACGTGAGTAAATGAAAA+GGG | + | chr1_4:40436966-40436985 | None:intergenic | 30.0% | |
| AAGTACGTGAGTAAATGAAA+AGG | + | chr1_4:40436967-40436986 | None:intergenic | 30.0% | |
| GAATCATTATCAAAACGTGT+TGG | - | chr1_4:40437009-40437028 | Msa0162870:intron | 30.0% | |
| ! | TTATGCAACCATCATTTTCT+GGG | + | chr1_4:40437227-40437246 | None:intergenic | 30.0% |
| ! | TTTATGCAACCATCATTTTC+TGG | + | chr1_4:40437228-40437247 | None:intergenic | 30.0% |
| TACGAGACTACAAAAATCAT+GGG | + | chr1_4:40437303-40437322 | None:intergenic | 30.0% | |
| AGACAAAATCTTAGGTATCA+AGG | + | chr1_4:40437372-40437391 | None:intergenic | 30.0% | |
| ! | TTGATACCTAAGATTTTGTC+TGG | - | chr1_4:40437371-40437390 | Msa0162870:CDS | 30.0% |
| ! | CATTTTCCAGACAAAATCTT+AGG | + | chr1_4:40437380-40437399 | None:intergenic | 30.0% |
| ! | CTAAGATTTTGTCTGGAAAA+TGG | - | chr1_4:40437378-40437397 | Msa0162870:CDS | 30.0% |
| ! | TTATTTCTTCTTGCACTTGA+AGG | - | chr1_4:40437482-40437501 | Msa0162870:intron | 30.0% |
| TCATATACCAAAACAAACTC+GGG | - | chr1_4:40437698-40437717 | Msa0162870:intron | 30.0% | |
| !! | TTTTAAACCCGAGTTTGTTT+TGG | + | chr1_4:40437708-40437727 | None:intergenic | 30.0% |
| !! | CTCGGGTTTAAAATATTTTG+AGG | - | chr1_4:40437715-40437734 | Msa0162870:intron | 30.0% |
| GGGTTATATTGGTAAATTAC+TGG | + | chr1_4:40437867-40437886 | None:intergenic | 30.0% | |
| ! | ACTGTCGATGAATTTTTAAC+CGG | - | chr1_4:40437899-40437918 | Msa0162870:intron | 30.0% |
| AATTTCATTCCTCTTGAAAC+GGG | + | chr1_4:40438017-40438036 | None:intergenic | 30.0% | |
| ! | TTATTTACCACATTGGCTAT+TGG | - | chr1_4:40438035-40438054 | Msa0162870:intron | 30.0% |
| AAATATCCAACACTATGTAG+TGG | - | chr1_4:40438067-40438086 | Msa0162870:intron | 30.0% | |
| ! | TTGAATCAATGTGAGACTTT+TGG | - | chr1_4:40438236-40438255 | Msa0162870:intron | 30.0% |
| ! | GTTTGAAGATTCTTAAGTTG+TGG | - | chr1_4:40438324-40438343 | Msa0162870:five_prime_UTR | 30.0% |
| !! | TTGAGTACCTTGGTGTTAAA+CGG | + | chr1_4:40433914-40433933 | None:intergenic | 35.0% |
| GTTTATGCAGCTTAGTGAAT+TGG | - | chr1_4:40434146-40434165 | Msa0162870:intron | 35.0% | |
| TCATACTTTCTCTGTAGCAA+CGG | - | chr1_4:40434257-40434276 | Msa0162870:intron | 35.0% | |
| CAGATTAGACATCTCTAACT+TGG | + | chr1_4:40434406-40434425 | None:intergenic | 35.0% | |
| !!! | GACAGTTTCACATTTTTTGG+TGG | - | chr1_4:40434470-40434489 | Msa0162870:intron | 35.0% |
| !! | CATTTTTCCAGTGGTATTGA+AGG | - | chr1_4:40434558-40434577 | Msa0162870:intron | 35.0% |
| GACCGTCACATAAAAGAAAA+TGG | - | chr1_4:40434846-40434865 | Msa0162870:three_prime_UTR | 35.0% | |
| !! | GGCCATTTTCTTTTATGTGA+CGG | + | chr1_4:40434851-40434870 | None:intergenic | 35.0% |
| TCGATAGAAGAAGAGGAAAA+GGG | + | chr1_4:40434957-40434976 | None:intergenic | 35.0% | |
| TTCGATAGAAGAAGAGGAAA+AGG | + | chr1_4:40434958-40434977 | None:intergenic | 35.0% | |
| ! | AAAGTGTTCGATAGAAGAAG+AGG | + | chr1_4:40434964-40434983 | None:intergenic | 35.0% |
| !! | GAAACAGACTATTGGTCTTA+AGG | - | chr1_4:40435058-40435077 | Msa0162870:intron | 35.0% |
| !! | CCTTTTCATCTGTGCTTTTT+CGG | + | chr1_4:40435111-40435130 | None:intergenic | 35.0% |
| GCAACACCATTAAGCAAAAA+AGG | - | chr1_4:40435553-40435572 | Msa0162870:intron | 35.0% | |
| CACCATTAAGCAAAAAAGGA+AGG | - | chr1_4:40435557-40435576 | Msa0162870:intron | 35.0% | |
| AACAAATACAGAGTGGGAAT+TGG | + | chr1_4:40435751-40435770 | None:intergenic | 35.0% | |
| TCTTTAGCAAAGAAAGAAGC+AGG | - | chr1_4:40435773-40435792 | Msa0162870:CDS | 35.0% | |
| CTTTAGCAAAGAAAGAAGCA+GGG | - | chr1_4:40435774-40435793 | Msa0162870:CDS | 35.0% | |
| ATCCATAAACAAAAAGGGGA+GGG | + | chr1_4:40436069-40436088 | None:intergenic | 35.0% | |
| GGCTACATCCATAAACAAAA+AGG | + | chr1_4:40436075-40436094 | None:intergenic | 35.0% | |
| TACATTGTAAGCACATTACG+GGG | - | chr1_4:40436249-40436268 | Msa0162870:intron | 35.0% | |
| GAAGCAGATCTGATTGTATA+TGG | - | chr1_4:40436303-40436322 | Msa0162870:intron | 35.0% | |
| ! | ATCATTTTGCAGCTAAGCAA+TGG | - | chr1_4:40436329-40436348 | Msa0162870:CDS | 35.0% |
| GATGCCTTAAATTGTGAGAA+CGG | + | chr1_4:40436622-40436641 | None:intergenic | 35.0% | |
| AGTGATTGAAAAGGTCATGT+GGG | + | chr1_4:40436654-40436673 | None:intergenic | 35.0% | |
| GTACATGTCAGTGATTGAAA+AGG | + | chr1_4:40436663-40436682 | None:intergenic | 35.0% | |
| TAAATGAAAAGGGTTCTGTG+TGG | + | chr1_4:40436956-40436975 | None:intergenic | 35.0% | |
| TTGTGTGGGGTAAGATTATT+TGG | - | chr1_4:40437101-40437120 | Msa0162870:intron | 35.0% | |
| CTACGAGACTACAAAAATCA+TGG | + | chr1_4:40437304-40437323 | None:intergenic | 35.0% | |
| ! | CATGATTTTTGTAGTCTCGT+AGG | - | chr1_4:40437302-40437321 | Msa0162870:CDS | 35.0% |
| TTTCATCGAATGTTTGACAG+TGG | + | chr1_4:40437341-40437360 | None:intergenic | 35.0% | |
| !! | CATTTTAAGTGGCTACATGT+TGG | - | chr1_4:40437564-40437583 | Msa0162870:five_prime_UTR | 35.0% |
| GTTATGCATTGCCAAATCAA+AGG | - | chr1_4:40437644-40437663 | Msa0162870:five_prime_UTR | 35.0% | |
| !! | GCTCTTTTGAGAAAATGGAT+TGG | - | chr1_4:40437765-40437784 | Msa0162870:intron | 35.0% |
| ATGAAAACCAATAGCCAATG+TGG | + | chr1_4:40438045-40438064 | None:intergenic | 35.0% | |
| !!! | ACATTGGCTATTGGTTTTCA+TGG | - | chr1_4:40438044-40438063 | Msa0162870:intron | 35.0% |
| ! | TCTTTTCCACTACATAGTGT+TGG | + | chr1_4:40438076-40438095 | None:intergenic | 35.0% |
| AAATTCGATAGCTGAAATCG+TGG | - | chr1_4:40438137-40438156 | Msa0162870:intron | 35.0% | |
| TCACATTTGTATGCAACACT+AGG | - | chr1_4:40438275-40438294 | Msa0162870:intron | 35.0% | |
| GAAGCGAAAATTGAGTACCT+TGG | + | chr1_4:40433924-40433943 | None:intergenic | 40.0% | |
| GCAGCTTAGTGAATTGGATT+AGG | - | chr1_4:40434152-40434171 | Msa0162870:intron | 40.0% | |
| TAGAATGTAACCACATGGGT+CGG | + | chr1_4:40434298-40434317 | None:intergenic | 40.0% | |
| TAACTTGGCAACAAACAGAG+AGG | + | chr1_4:40434391-40434410 | None:intergenic | 40.0% | |
| ! | GGTTCACAACCACTCTAAAA+AGG | - | chr1_4:40434917-40434936 | Msa0162870:three_prime_UTR | 40.0% |
| GGAAAAGGGTTAAACCTTCT+GGG | + | chr1_4:40434943-40434962 | None:intergenic | 40.0% | |
| AGGAAAAGGGTTAAACCTTC+TGG | + | chr1_4:40434944-40434963 | None:intergenic | 40.0% | |
| !! | CTATTGGTCTTAAGGGAAAG+AGG | - | chr1_4:40435066-40435085 | Msa0162870:intron | 40.0% |
| ! | CCGAAAAAGCACAGATGAAA+AGG | - | chr1_4:40435108-40435127 | Msa0162870:intron | 40.0% |
| TGCATGAAGAGTCAACATCT+AGG | - | chr1_4:40435353-40435372 | Msa0162870:intron | 40.0% | |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr1_4:40435378-40435397 | Msa0162870:intron | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+AGG | - | chr1_4:40435382-40435401 | Msa0162870:intron | 40.0% |
| ! | AGCTGTTCCTGCTTATCTTT+TGG | - | chr1_4:40435405-40435424 | Msa0162870:intron | 40.0% |
| TCACGATCCAAAAGATAAGC+AGG | + | chr1_4:40435415-40435434 | None:intergenic | 40.0% | |
| AACTGTCTTCCAAAACAGCA+TGG | + | chr1_4:40435468-40435487 | None:intergenic | 40.0% | |
| TTGATTCTCTTGCACACTCT+AGG | - | chr1_4:40435495-40435514 | Msa0162870:intron | 40.0% | |
| TGAATGTGCAATCTCACCTT+AGG | + | chr1_4:40435712-40435731 | None:intergenic | 40.0% | |
| AAGCAGGGAAAGACATGAAA+CGG | - | chr1_4:40435789-40435808 | Msa0162870:CDS | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr1_4:40435874-40435893 | None:intergenic | 40.0% | |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr1_4:40435906-40435925 | None:intergenic | 40.0% |
| TCCATAAACAAAAAGGGGAG+GGG | + | chr1_4:40436068-40436087 | None:intergenic | 40.0% | |
| CATCCATAAACAAAAAGGGG+AGG | + | chr1_4:40436070-40436089 | None:intergenic | 40.0% | |
| ! | GATGCTGAAATTTTTGTGGG+CGG | - | chr1_4:40436128-40436147 | Msa0162870:intron | 40.0% |
| AGCTAAGCAATGGAAGAGAA+TGG | - | chr1_4:40436339-40436358 | Msa0162870:CDS | 40.0% | |
| !! | CTCATACTTTGGTGGTTTTC+TGG | + | chr1_4:40436398-40436417 | None:intergenic | 40.0% |
| ATGAATCGCTCATACTTTGG+TGG | + | chr1_4:40436406-40436425 | None:intergenic | 40.0% | |
| CGAATGAATCGCTCATACTT+TGG | + | chr1_4:40436409-40436428 | None:intergenic | 40.0% | |
| TTAGTGAAACGCAATCCAGT+GGG | + | chr1_4:40436433-40436452 | None:intergenic | 40.0% | |
| TTTAGTGAAACGCAATCCAG+TGG | + | chr1_4:40436434-40436453 | None:intergenic | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr1_4:40436505-40436524 | Msa0162870:intron | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr1_4:40436555-40436574 | Msa0162870:intron | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr1_4:40436560-40436579 | None:intergenic | 40.0% | |
| CAGTGATTGAAAAGGTCATG+TGG | + | chr1_4:40436655-40436674 | None:intergenic | 40.0% | |
| TCTCTTGCTTACTGTGATTC+AGG | - | chr1_4:40437036-40437055 | Msa0162870:intron | 40.0% | |
| GAATGTTAGCGAACTTGGTT+TGG | - | chr1_4:40437060-40437079 | Msa0162870:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr1_4:40437216-40437235 | Msa0162870:intron | 40.0% | |
| ! | ACCATCATTTTCTGGGTTGT+TGG | + | chr1_4:40437220-40437239 | None:intergenic | 40.0% |
| ! | TTTAAGGTCAGATCGAGCAT+TGG | - | chr1_4:40437262-40437281 | Msa0162870:intron | 40.0% |
| ACTACAAAAATCATGGGAGG+AGG | + | chr1_4:40437297-40437316 | None:intergenic | 40.0% | |
| GAGACTACAAAAATCATGGG+AGG | + | chr1_4:40437300-40437319 | None:intergenic | 40.0% | |
| TTGCACTTGAAGGTAACTAG+TGG | - | chr1_4:40437492-40437511 | Msa0162870:intron | 40.0% | |
| TGCCAAATCAAAGGATGAGT+CGG | - | chr1_4:40437653-40437672 | Msa0162870:five_prime_UTR | 40.0% | |
| TGGCCATTTGCATAGAAGAA+TGG | - | chr1_4:40437785-40437804 | Msa0162870:intron | 40.0% | |
| ACGCCATTCTTCTATGCAAA+TGG | + | chr1_4:40437791-40437810 | None:intergenic | 40.0% | |
| ! | TAGAAGAATGGCGTTGAATC+AGG | - | chr1_4:40437797-40437816 | Msa0162870:intron | 40.0% |
| AAGAATGCTGTTGACACATG+TGG | - | chr1_4:40437826-40437845 | Msa0162870:intron | 40.0% | |
| AACTGTCGATGGGGTTATAT+TGG | + | chr1_4:40437878-40437897 | None:intergenic | 40.0% | |
| ATCGACAGTTAACTGTCGAT+GGG | + | chr1_4:40437888-40437907 | None:intergenic | 40.0% | |
| ! | GTCGATGAATTTTTAACCGG+CGG | - | chr1_4:40437902-40437921 | Msa0162870:intron | 40.0% |
| ! | AAGATTGCTGTTGACACATG+TGG | + | chr1_4:40437980-40437999 | None:intergenic | 40.0% |
| !! | AGTACCTTGGTGTTAAACGG+TGG | + | chr1_4:40433911-40433930 | None:intergenic | 45.0% |
| ! | CCAATAACAAGAGAGGTGTG+AGG | + | chr1_4:40434019-40434038 | None:intergenic | 45.0% |
| ! | CCTCACACCTCTCTTGTTAT+TGG | - | chr1_4:40434016-40434035 | Msa0162870:intron | 45.0% |
| TTACTGACACGAACACATCC+CGG | + | chr1_4:40434345-40434364 | None:intergenic | 45.0% | |
| ! | TTCCAGTGGTATTGAAGGTG+TGG | - | chr1_4:40434563-40434582 | Msa0162870:intron | 45.0% |
| CAACACATGCTATAAAGCCG+AGG | - | chr1_4:40434591-40434610 | Msa0162870:intron | 45.0% | |
| CGGTCTATATGATCTCCTTG+AGG | + | chr1_4:40434831-40434850 | None:intergenic | 45.0% | |
| GCTCTTGTCTGTCAACAGTT+TGG | - | chr1_4:40435327-40435346 | Msa0162870:intron | 45.0% | |
| TGAAAACACGACCAGAGCAA+AGG | - | chr1_4:40435432-40435451 | Msa0162870:intron | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr1_4:40435693-40435712 | Msa0162870:CDS | 45.0% | |
| TGCAATCTCACCTTAGGTAG+AGG | + | chr1_4:40435706-40435725 | None:intergenic | 45.0% | |
| AGCAGGGAAAGACATGAAAC+GGG | - | chr1_4:40435790-40435809 | Msa0162870:CDS | 45.0% | |
| GGAGGGGACAAAGAATGATA+AGG | + | chr1_4:40436052-40436071 | None:intergenic | 45.0% | |
| !! | TCCCCTCCCCTTTTTGTTTA+TGG | - | chr1_4:40436064-40436083 | Msa0162870:intron | 45.0% |
| ! | AAAGCAACATTTGTTGGGCC+TGG | - | chr1_4:40436367-40436386 | Msa0162870:intron | 45.0% |
| !! | GGTGGTTTTCTGGTAAAACC+AGG | + | chr1_4:40436388-40436407 | None:intergenic | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+GGG | + | chr1_4:40436532-40436551 | None:intergenic | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr1_4:40436540-40436559 | Msa0162870:intron | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr1_4:40436541-40436560 | Msa0162870:intron | 45.0% |
| ACAATGTTCATACGCTCTCC+AGG | - | chr1_4:40436795-40436814 | Msa0162870:CDS | 45.0% | |
| CAGGTGAATGTTAGCGAACT+TGG | - | chr1_4:40437055-40437074 | Msa0162870:intron | 45.0% | |
| !! | TTGGTTTGGTTACACCTGCA+GGG | - | chr1_4:40437074-40437093 | Msa0162870:intron | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr1_4:40437211-40437230 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr1_4:40437212-40437231 | None:intergenic | 45.0% |
| CATCGAATGTTTGACAGTGG+CGG | + | chr1_4:40437338-40437357 | None:intergenic | 45.0% | |
| TTCCACAACATGACAGTGTC+CGG | + | chr1_4:40437424-40437443 | None:intergenic | 45.0% | |
| !! | CACCGACTCATCCTTTGATT+TGG | + | chr1_4:40437658-40437677 | None:intergenic | 45.0% |
| TGCTGTTGACACATGTGGTT+TGG | - | chr1_4:40437831-40437850 | Msa0162870:intron | 45.0% | |
| TCGACAGTTAACTGTCGATG+GGG | + | chr1_4:40437889-40437908 | None:intergenic | 45.0% | |
| CATCGACAGTTAACTGTCGA+TGG | + | chr1_4:40437887-40437906 | None:intergenic | 45.0% | |
| TGCTGTTGACACATGTGGTT+TGG | + | chr1_4:40437831-40437850 | None:intergenic | 45.0% | |
| TGTGTCAACAGCAATCTTCC+AGG | - | chr1_4:40437982-40438001 | Msa0162870:intron | 45.0% | |
| AAAGACTGACCCGTTTCAAG+AGG | - | chr1_4:40438005-40438024 | Msa0162870:intron | 45.0% | |
| CGTTGGGGGGATTCAAGTAT+GGG | + | chr1_4:40433844-40433863 | None:intergenic | 50.0% | |
| TCGTTGGGGGGATTCAAGTA+TGG | + | chr1_4:40433845-40433864 | None:intergenic | 50.0% | |
| TCGAGAAGCTACTCTCGTTG+GGG | + | chr1_4:40433859-40433878 | None:intergenic | 50.0% | |
| GTCGAGAAGCTACTCTCGTT+GGG | + | chr1_4:40433860-40433879 | None:intergenic | 50.0% | |
| TGTCGAGAAGCTACTCTCGT+TGG | + | chr1_4:40433861-40433880 | None:intergenic | 50.0% | |
| ACTGCCACCGTTTAACACCA+AGG | - | chr1_4:40433904-40433923 | Msa0162870:intron | 50.0% | |
| GAACGGAACATCGTCTGAGA+CGG | - | chr1_4:40434113-40434132 | Msa0162870:intron | 50.0% | |
| ! | AACGGAACATCGTCTGAGAC+GGG | - | chr1_4:40434114-40434133 | Msa0162870:intron | 50.0% |
| CACCACACCTTCAATACCAC+TGG | + | chr1_4:40434568-40434587 | None:intergenic | 50.0% | |
| ! | ATAACGGGACTCTTTCGCCT+CGG | + | chr1_4:40434611-40434630 | None:intergenic | 50.0% |
| TGCGGGTTTCGTGATCGAAA+CGG | + | chr1_4:40434875-40434894 | None:intergenic | 50.0% | |
| !! | CCTTCTGGGCCTTTTTAGAG+TGG | + | chr1_4:40434929-40434948 | None:intergenic | 50.0% |
| ! | CCACTCTAAAAAGGCCCAGA+AGG | - | chr1_4:40434926-40434945 | Msa0162870:three_prime_UTR | 50.0% |
| AGAGTCAACATCTAGGCGCA+AGG | - | chr1_4:40435360-40435379 | Msa0162870:intron | 50.0% | |
| ACACGACCAGAGCAAAGGTA+TGG | - | chr1_4:40435437-40435456 | Msa0162870:intron | 50.0% | |
| !! | ATGGTCGTGCCATGCTGTTT+TGG | - | chr1_4:40435456-40435475 | Msa0162870:intron | 50.0% |
| GCAGGGAAAGACATGAAACG+GGG | - | chr1_4:40435791-40435810 | Msa0162870:CDS | 50.0% | |
| ATTTCCTCAGGTACGTCCTG+TGG | - | chr1_4:40435855-40435874 | Msa0162870:CDS | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr1_4:40435889-40435908 | Msa0162870:intron | 50.0% | |
| AGGTGTACATGGGGCCATTA+GGG | + | chr1_4:40436522-40436541 | None:intergenic | 50.0% | |
| ! | CACCAAGAGAGGTGTACATG+GGG | + | chr1_4:40436531-40436550 | None:intergenic | 50.0% |
| ! | GACACCAAGAGAGGTGTACA+TGG | + | chr1_4:40436533-40436552 | None:intergenic | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr1_4:40436542-40436561 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr1_4:40436539-40436558 | Msa0162870:intron | 50.0% |
| !! | CTTGGTTTGGTTACACCTGC+AGG | - | chr1_4:40437073-40437092 | Msa0162870:intron | 50.0% |
| ACCTGCAGGGAAAGTTGTGT+GGG | - | chr1_4:40437087-40437106 | Msa0162870:intron | 50.0% | |
| GAATGCAGGTAAATACGCCC+AGG | - | chr1_4:40437191-40437210 | Msa0162870:intron | 50.0% | |
| !! | AAGGTCAGATCGAGCATTGG+AGG | - | chr1_4:40437265-40437284 | Msa0162870:intron | 50.0% |
| ATCCGGACACTGTCATGTTG+TGG | - | chr1_4:40437419-40437438 | Msa0162870:intron | 50.0% | |
| TGAAACGGGTCAGTCTTTCC+TGG | + | chr1_4:40438003-40438022 | None:intergenic | 50.0% | |
| CAAGTATGGGAGGCGGCTTA+GGG | + | chr1_4:40433831-40433850 | None:intergenic | 55.0% | |
| TCAAGTATGGGAGGCGGCTT+AGG | + | chr1_4:40433832-40433851 | None:intergenic | 55.0% | |
| GGGGATTCAAGTATGGGAGG+CGG | + | chr1_4:40433838-40433857 | None:intergenic | 55.0% | |
| TGGGGGGATTCAAGTATGGG+AGG | + | chr1_4:40433841-40433860 | None:intergenic | 55.0% | |
| GAGAAGCTACTCTCGTTGGG+GGG | + | chr1_4:40433857-40433876 | None:intergenic | 55.0% | |
| CGAGAAGCTACTCTCGTTGG+GGG | + | chr1_4:40433858-40433877 | None:intergenic | 55.0% | |
| GTTAAACGGTGGCAGTCTGG+CGG | + | chr1_4:40433900-40433919 | None:intergenic | 55.0% | |
| GGTGTTAAACGGTGGCAGTC+TGG | + | chr1_4:40433903-40433922 | None:intergenic | 55.0% | |
| TTGCTAGACACCGACCCATG+TGG | - | chr1_4:40434285-40434304 | Msa0162870:intron | 55.0% | |
| GGGTTTCGTGATCGAAACGG+CGG | + | chr1_4:40434872-40434891 | None:intergenic | 55.0% | |
| GCACGACCATACCTTTGCTC+TGG | + | chr1_4:40435446-40435465 | None:intergenic | 55.0% | |
| GAGCGATTCATTCGTCCCAC+TGG | - | chr1_4:40436415-40436434 | Msa0162870:intron | 55.0% | |
| GAGGTGTACATGGGGCCATT+AGG | + | chr1_4:40436523-40436542 | None:intergenic | 55.0% | |
| CACCTGCAGGGAAAGTTGTG+TGG | - | chr1_4:40437086-40437105 | Msa0162870:intron | 55.0% | |
| CCTGCAGGGAAAGTTGTGTG+GGG | - | chr1_4:40437088-40437107 | Msa0162870:intron | 55.0% | |
| CATCGGCAGTTTACTACCGC+CGG | + | chr1_4:40437921-40437940 | None:intergenic | 55.0% | |
| GGCGGTAGTAAACTGCCGAT+GGG | - | chr1_4:40437920-40437939 | Msa0162870:intron | 55.0% | |
| AACCCGCAAGCGCAAGAGAG+AGG | - | chr1_4:40434887-40434906 | Msa0162870:three_prime_UTR | 60.0% | |
| AGCCTCTCTCTTGCGCTTGC+GGG | + | chr1_4:40434892-40434911 | None:intergenic | 60.0% | |
| GAGCCTCTCTCTTGCGCTTG+CGG | + | chr1_4:40434893-40434912 | None:intergenic | 60.0% | |
| TCAGCCACAGGACGTACCTG+AGG | + | chr1_4:40435862-40435881 | None:intergenic | 60.0% | |
| GGCCCCATGTACACCTCTCT+TGG | - | chr1_4:40436526-40436545 | Msa0162870:intron | 60.0% | |
| CCCCACACAACTTTCCCTGC+AGG | + | chr1_4:40437091-40437110 | None:intergenic | 60.0% | |
| CGGCGGTAGTAAACTGCCGA+TGG | - | chr1_4:40437919-40437938 | Msa0162870:intron | 60.0% | |
| GCGCAAGAGAGAGGCTCGTG+AGG | - | chr1_4:40434896-40434915 | Msa0162870:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 40433791 | 40438453 | 40433791 | ID=Msa0162870;Name=Msa0162870 |
| chr1_4 | mRNA | 40433791 | 40438453 | 40433791 | ID=Msa0162870-mRNA-1;Parent=Msa0162870;Name=Msa0162870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=256|0.88|1|1|0.77|0.6|10|329|237 |
| chr1_4 | exon | 40433791 | 40433818 | 40433791 | ID=Msa0162870-mRNA-1:exon:11707;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40434677 | 40435045 | 40434677 | ID=Msa0162870-mRNA-1:exon:11706;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40435135 | 40435186 | 40435135 | ID=Msa0162870-mRNA-1:exon:11705;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40435668 | 40435903 | 40435668 | ID=Msa0162870-mRNA-1:exon:11704;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40436322 | 40436379 | 40436322 | ID=Msa0162870-mRNA-1:exon:11703;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40436791 | 40436899 | 40436791 | ID=Msa0162870-mRNA-1:exon:11702;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40437112 | 40437179 | 40437112 | ID=Msa0162870-mRNA-1:exon:11701;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40437297 | 40437416 | 40437297 | ID=Msa0162870-mRNA-1:exon:11700;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40437552 | 40437675 | 40437552 | ID=Msa0162870-mRNA-1:exon:11699;Parent=Msa0162870-mRNA-1 |
| chr1_4 | exon | 40438319 | 40438453 | 40438319 | ID=Msa0162870-mRNA-1:exon:11698;Parent=Msa0162870-mRNA-1 |
| chr1_4 | five_prime_UTR | 40438319 | 40438453 | 40438319 | ID=Msa0162870-mRNA-1:five_prime_utr;Parent=Msa0162870-mRNA-1 |
| chr1_4 | five_prime_UTR | 40437555 | 40437675 | 40437555 | ID=Msa0162870-mRNA-1:five_prime_utr;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40437552 | 40437554 | 40437552 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40437297 | 40437416 | 40437297 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40437112 | 40437179 | 40437112 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40436791 | 40436899 | 40436791 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40436322 | 40436379 | 40436322 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40435668 | 40435903 | 40435668 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40435135 | 40435186 | 40435135 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | CDS | 40434978 | 40435045 | 40434978 | ID=Msa0162870-mRNA-1:cds;Parent=Msa0162870-mRNA-1 |
| chr1_4 | three_prime_UTR | 40434677 | 40434977 | 40434677 | ID=Msa0162870-mRNA-1:three_prime_utr;Parent=Msa0162870-mRNA-1 |
| chr1_4 | three_prime_UTR | 40433791 | 40433818 | 40433791 | ID=Msa0162870-mRNA-1:three_prime_utr;Parent=Msa0162870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
