Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163900 | GAU37388.1 | 76.812 | 345 | 46 | 1 | 1 | 345 | 1 | 311 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163900 | sp|Q9SR62|RLPH2_ARATH | 58.235 | 340 | 108 | 1 | 4 | 343 | 2 | 307 | 4.83e-146 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163900 | A0A2Z6MXU0 | 76.812 | 345 | 46 | 1 | 1 | 345 | 1 | 311 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072320 | Msa0163900 | 0.918579 | 1.308447e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163900 | MtrunA17_Chr1g0179141 | 73.043 | 345 | 59 | 1 | 1 | 345 | 1 | 311 | 0.0 | 505 |
| Msa0163900 | MtrunA17_Chr1g0179131 | 95.376 | 173 | 8 | 0 | 1 | 173 | 1 | 173 | 2.68e-125 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163900 | AT3G09970.1 | 58.235 | 340 | 108 | 1 | 4 | 343 | 2 | 307 | 4.90e-147 | 417 |
| Msa0163900 | AT3G09960.1 | 55.752 | 339 | 115 | 2 | 4 | 341 | 3 | 307 | 2.31e-137 | 393 |
| Msa0163900 | AT3G09970.2 | 55.944 | 286 | 92 | 1 | 4 | 289 | 2 | 253 | 6.65e-117 | 339 |
Find 89 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAATTTCTTGCGAATT+TGG | 0.143154 | 1_4:+42313879 | Msa0163900:CDS |
| CGCAGGGTGGCGGGAGGAGG+TGG | 0.275927 | 1_4:-42309196 | None:intergenic |
| GAGAGAGAAGGGTGGTTTAC+TGG | 0.282278 | 1_4:+42309266 | Msa0163900:CDS |
| CAATTCATTGCATGCAGATT+TGG | 0.299945 | 1_4:+42313834 | Msa0163900:CDS |
| ATTCGTGATACAGATCTATT+AGG | 0.313950 | 1_4:+42314456 | Msa0163900:CDS |
| ACAGCCACTATCATCTTCTT+AGG | 0.333203 | 1_4:+42309044 | Msa0163900:CDS |
| AATTTCTTGCGAATTTGGTT+TGG | 0.357446 | 1_4:+42313884 | Msa0163900:CDS |
| AACTCCATGTTGAAGGCTTA+AGG | 0.360440 | 1_4:+42314361 | Msa0163900:CDS |
| GGAAGAATAATTGCAGCTAT+TGG | 0.364132 | 1_4:-42314420 | None:intergenic |
| AGAAATTTCTTATGCTCATC+AGG | 0.364876 | 1_4:-42313868 | None:intergenic |
| AGATAAATTAGTACTCTCTA+AGG | 0.365007 | 1_4:+42313809 | Msa0163900:intron |
| AGCTTGAACCATAGGACTTC+GGG | 0.368046 | 1_4:-42314162 | None:intergenic |
| CGTCGCAGGGTGGCGGGAGG+AGG | 0.368315 | 1_4:-42309199 | None:intergenic |
| TGTATCACGAATAATCTTCA+TGG | 0.369384 | 1_4:-42314445 | None:intergenic |
| ATTTCTTGCGAATTTGGTTT+GGG | 0.378397 | 1_4:+42313885 | Msa0163900:CDS |
| AAGTTGATTGCTGTCCATGC+TGG | 0.382258 | 1_4:+42314083 | Msa0163900:CDS |
| AGGGTGGCGGGAGGAGGTGG+AGG | 0.385820 | 1_4:-42309193 | None:intergenic |
| TAAGTGGTAGAAAGAATGTA+TGG | 0.406045 | 1_4:+42314186 | Msa0163900:CDS |
| CTCCTCCCGCCACCCTGCGA+CGG | 0.424125 | 1_4:+42309200 | Msa0163900:CDS |
| AGTTCAACCATCATTGTTAG+TGG | 0.435708 | 1_4:+42314327 | Msa0163900:CDS |
| CAGTCCTATGGAGTTTCTCA+TGG | 0.437308 | 1_4:+42309410 | Msa0163900:CDS |
| AGCATTGTGAGGAGAGAGAA+GGG | 0.442648 | 1_4:+42309255 | Msa0163900:CDS |
| AGCATACGATCCTTGCTTCA+TGG | 0.444015 | 1_4:-42308935 | None:intergenic |
| AGAAAATTCTGACCCGTCGC+AGG | 0.447690 | 1_4:-42309213 | None:intergenic |
| GACTAAATTTAATGTTGCTA+AGG | 0.450224 | 1_4:+42309343 | Msa0163900:CDS |
| GAGGTGGAGGAAGGCGGCGA+AGG | 0.455694 | 1_4:-42309180 | None:intergenic |
| CGGGAGGAGGTGGAGGAAGG+CGG | 0.456011 | 1_4:-42309186 | None:intergenic |
| TCTGACCCGTCGCAGGGTGG+CGG | 0.457196 | 1_4:-42309206 | None:intergenic |
| CGAAGTCATGGTTTCCAGCT+AGG | 0.462451 | 1_4:-42309157 | None:intergenic |
| TCCTCCCGCCACCCTGCGAC+GGG | 0.467836 | 1_4:+42309201 | Msa0163900:CDS |
| ATATGTCGGGACATACTTAC+CGG | 0.469552 | 1_4:-42309438 | None:intergenic |
| CATGCAAAACTCCATGTTGA+AGG | 0.471442 | 1_4:+42314354 | Msa0163900:CDS |
| AAGAAAATCAATTACTCGGC+GGG | 0.474527 | 1_4:-42309093 | None:intergenic |
| GTCTTTATAAACATTGATGA+TGG | 0.479812 | 1_4:+42314047 | Msa0163900:CDS |
| CTGACCCGTCGCAGGGTGGC+GGG | 0.487506 | 1_4:-42309205 | None:intergenic |
| ATTGCATGCAGATTTGGTTA+AGG | 0.487545 | 1_4:+42313840 | Msa0163900:CDS |
| TTTGAATTGTGATGGTTTGA+CGG | 0.488650 | 1_4:-42309021 | None:intergenic |
| TCGAGATACCCGAAGTCCTA+TGG | 0.490954 | 1_4:+42314154 | Msa0163900:CDS |
| GGAGTTTCTCATGGTTCTGC+CGG | 0.493883 | 1_4:+42309419 | Msa0163900:CDS |
| ACTAAATTTAATGTTGCTAA+GGG | 0.501234 | 1_4:+42309344 | Msa0163900:CDS |
| CCACTTAGAGCTTGAACCAT+AGG | 0.508217 | 1_4:-42314170 | None:intergenic |
| GAGCTTGAACCATAGGACTT+CGG | 0.510904 | 1_4:-42314163 | None:intergenic |
| AAGCATTGTGAGGAGAGAGA+AGG | 0.511990 | 1_4:+42309254 | Msa0163900:CDS |
| TACTTAAGACGATTATATGT+CGG | 0.512593 | 1_4:-42309452 | None:intergenic |
| TTAGGTGATTACTGTGACAG+AGG | 0.513807 | 1_4:+42309062 | Msa0163900:CDS |
| ACTTAAGACGATTATATGTC+GGG | 0.514628 | 1_4:-42309451 | None:intergenic |
| GCATACGATCCTTGCTTCAT+GGG | 0.516271 | 1_4:-42308934 | None:intergenic |
| TGGCGGGAGGAGGTGGAGGA+AGG | 0.517276 | 1_4:-42309189 | None:intergenic |
| CAAGGTTCTGTAAATGATGC+TGG | 0.521943 | 1_4:+42309377 | Msa0163900:CDS |
| CTATAAGAAAATCAATTACT+CGG | 0.524185 | 1_4:-42309097 | None:intergenic |
| GCTTCTGCCTGTGTTGGCAA+TGG | 0.529818 | 1_4:+42313459 | Msa0163900:intron |
| TATGCAGCTTCTGCCTGTGT+TGG | 0.537174 | 1_4:+42313453 | Msa0163900:intron |
| AGTTGATTGCTGTCCATGCT+GGG | 0.538411 | 1_4:+42314084 | Msa0163900:CDS |
| TTAAGGTTGATAATTGATGA+AGG | 0.545370 | 1_4:+42314378 | Msa0163900:CDS |
| TTTGGTTTGGGTTCATGAAG+AGG | 0.545936 | 1_4:+42313897 | Msa0163900:CDS |
| GCAAGGATCGTATGCTGCAT+CGG | 0.547959 | 1_4:+42308942 | Msa0163900:CDS |
| GCTAAGGGTCGTGTGTATCA+AGG | 0.548845 | 1_4:+42309359 | Msa0163900:CDS |
| GTCCATGCTGGGTTGGAGAA+AGG | 0.556867 | 1_4:+42314095 | Msa0163900:CDS |
| TGCCTTTCTCCAACCCAGCA+TGG | 0.558579 | 1_4:-42314097 | None:intergenic |
| GAAGGGTGGTTTACTGGTGA+CGG | 0.570581 | 1_4:+42309272 | Msa0163900:CDS |
| ACCCGTCGCAGGGTGGCGGG+AGG | 0.572448 | 1_4:-42309202 | None:intergenic |
| ATCACCTAAGAAGATGATAG+TGG | 0.572823 | 1_4:-42309048 | None:intergenic |
| AGGCGGCGAAGGCGAAGTCA+TGG | 0.581598 | 1_4:-42309169 | None:intergenic |
| TTGATAATTGATGAAGGTGG+TGG | 0.585017 | 1_4:+42314384 | Msa0163900:CDS |
| TGCTGCATCGGTGACATCCA+CGG | 0.585229 | 1_4:+42308954 | Msa0163900:CDS |
| GATTGCTGTCCATGCTGGGT+TGG | 0.586278 | 1_4:+42314088 | Msa0163900:CDS |
| AACTCCATAGGACTGAAAAG+TGG | 0.592591 | 1_4:-42309402 | None:intergenic |
| AGATGCATGTGCAAGGCAGA+AGG | 0.592829 | 1_4:+42309303 | Msa0163900:CDS |
| GAAAATTCTGACCCGTCGCA+GGG | 0.595212 | 1_4:-42309212 | None:intergenic |
| AAGTGGTAGAAAGAATGTAT+GGG | 0.600330 | 1_4:+42314187 | Msa0163900:CDS |
| TCAATTACTCGGCGGGTGTG+AGG | 0.600480 | 1_4:-42309086 | None:intergenic |
| ACTCCATAGGACTGAAAAGT+GGG | 0.605303 | 1_4:-42309401 | None:intergenic |
| TGCATGTGCAAGGCAGAAGG+TGG | 0.605884 | 1_4:+42309306 | Msa0163900:CDS |
| TCACGAATAATCTTCATGGA+AGG | 0.612634 | 1_4:-42314441 | None:intergenic |
| TATGAGAAGATGCATGTGCA+AGG | 0.618350 | 1_4:+42309296 | Msa0163900:CDS |
| GATGGAGTTTAAGCATTGTG+AGG | 0.619332 | 1_4:+42309244 | Msa0163900:CDS |
| ACACATACCATTGCCAACAC+AGG | 0.619468 | 1_4:-42313466 | None:intergenic |
| GTGCAAGGCAGAAGGTGGAG+TGG | 0.622956 | 1_4:+42309311 | Msa0163900:CDS |
| CCTATGGTTCAAGCTCTAAG+TGG | 0.624904 | 1_4:+42314170 | Msa0163900:CDS |
| TGTCAGAATCCCATGAAGCA+AGG | 0.627610 | 1_4:+42308925 | Msa0163900:CDS |
| TCAACCTTAAGCCTTCAACA+TGG | 0.637711 | 1_4:-42314365 | None:intergenic |
| ATGGTGACCACTAACAATGA+TGG | 0.654637 | 1_4:-42314334 | None:intergenic |
| TAAGAAAATCAATTACTCGG+CGG | 0.667038 | 1_4:-42309094 | None:intergenic |
| AGAACCATGAGAAACTCCAT+AGG | 0.669495 | 1_4:-42309414 | None:intergenic |
| ATTGTGAGGAGAGAGAAGGG+TGG | 0.669873 | 1_4:+42309258 | Msa0163900:CDS |
| TTAGCTTGTCAATGAAACCG+TGG | 0.680796 | 1_4:-42308971 | None:intergenic |
| AATTCTGACCCGTCGCAGGG+TGG | 0.692479 | 1_4:-42309209 | None:intergenic |
| GAATGTATGGGATATTCCAG+AGG | 0.693556 | 1_4:+42314199 | Msa0163900:CDS |
| AGGTTGATAATTGATGAAGG+TGG | 0.714328 | 1_4:+42314381 | Msa0163900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACAATTTTTAAAAAGTA+AGG | - | chr1_4:42309521-42309540 | None:intergenic | 10.0% |
| !!! | ATAATTTTGATACATTATTT+GGG | - | chr1_4:42310020-42310039 | None:intergenic | 10.0% |
| !!! | AATAATTTTGATACATTATT+TGG | - | chr1_4:42310021-42310040 | None:intergenic | 10.0% |
| !! | AATCAATTAAATAATTAAGA+CGG | + | chr1_4:42312740-42312759 | Msa0163900:intron | 10.0% |
| !! | TTATTAAATGATATGTATGT+AGG | + | chr1_4:42309984-42310003 | Msa0163900:intron | 15.0% |
| !!! | TAATTTTGATACATTATTTG+GGG | - | chr1_4:42310019-42310038 | None:intergenic | 15.0% |
| !!! | TAATAAAACTGTTATTTCTT+TGG | - | chr1_4:42310377-42310396 | None:intergenic | 15.0% |
| !! | ATTAAGAAATATGATAGAAT+AGG | + | chr1_4:42310393-42310412 | Msa0163900:intron | 15.0% |
| !!! | TTAAATGAGATTTTTATGTT+GGG | - | chr1_4:42310524-42310543 | None:intergenic | 15.0% |
| !!! | TTTAAATGAGATTTTTATGT+TGG | - | chr1_4:42310525-42310544 | None:intergenic | 15.0% |
| !! | AAATAACATATCATCATTAA+AGG | + | chr1_4:42311702-42311721 | Msa0163900:intron | 15.0% |
| !! | AATAACATATCATCATTAAA+GGG | + | chr1_4:42311703-42311722 | Msa0163900:intron | 15.0% |
| !!! | ATTATTTAATTGATTCAATG+AGG | - | chr1_4:42312735-42312754 | None:intergenic | 15.0% |
| !! | ATCAATTAAATAATTAAGAC+GGG | + | chr1_4:42312741-42312760 | Msa0163900:intron | 15.0% |
| !!! | ATTTAGATTTTAGATACAAT+TGG | - | chr1_4:42313259-42313278 | None:intergenic | 15.0% |
| !! | TATAATCAAAAGATAGAATA+TGG | - | chr1_4:42313719-42313738 | None:intergenic | 15.0% |
| !! | CTATAAGAAAATCAATTACT+CGG | - | chr1_4:42309100-42309119 | None:intergenic | 20.0% |
| !! | ACTAAATTTAATGTTGCTAA+GGG | + | chr1_4:42309344-42309363 | Msa0163900:CDS | 20.0% |
| !! | TTTAGTTAAGTGATTATGTT+TGG | + | chr1_4:42309744-42309763 | Msa0163900:intron | 20.0% |
| !! | TTAGTTAAGTGATTATGTTT+GGG | + | chr1_4:42309745-42309764 | Msa0163900:intron | 20.0% |
| !!! | ATTACAAAAGAGAGTTTTAA+AGG | + | chr1_4:42309823-42309842 | Msa0163900:intron | 20.0% |
| !!! | TTACAAAAGAGAGTTTTAAA+GGG | + | chr1_4:42309824-42309843 | Msa0163900:intron | 20.0% |
| !!! | TCAGAGTATTTAATTCATAA+CGG | + | chr1_4:42310545-42310564 | Msa0163900:intron | 20.0% |
| !! | ATTATCAAAATATCATCATC+AGG | + | chr1_4:42311081-42311100 | Msa0163900:intron | 20.0% |
| !! | TTATCAAAATATCATCATCA+GGG | + | chr1_4:42311082-42311101 | Msa0163900:intron | 20.0% |
| !! | GAATTGAATTTAACATGATT+AGG | - | chr1_4:42312266-42312285 | None:intergenic | 20.0% |
| !! | TTTCAATATAATTAAGGGTA+TGG | - | chr1_4:42312295-42312314 | None:intergenic | 20.0% |
| !!! | CTAGCTTTCAATATAATTAA+GGG | - | chr1_4:42312300-42312319 | None:intergenic | 20.0% |
| !!! | ACTAGCTTTCAATATAATTA+AGG | - | chr1_4:42312301-42312320 | None:intergenic | 20.0% |
| !! | AATCTAAATAACCAAACAAA+AGG | + | chr1_4:42313270-42313289 | Msa0163900:intron | 20.0% |
| !! | ATTGTTAATTTAATCGACAA+TGG | - | chr1_4:42313990-42314009 | None:intergenic | 20.0% |
| !!! | AGGAAAACATGTTTTTGATT+CGG | - | chr1_4:42309140-42309159 | None:intergenic | 25.0% |
| ! | GACTAAATTTAATGTTGCTA+AGG | + | chr1_4:42309343-42309362 | Msa0163900:CDS | 25.0% |
| ! | TACTTAAGACGATTATATGT+CGG | - | chr1_4:42309455-42309474 | None:intergenic | 25.0% |
| !!! | TACAAAAGAGAGTTTTAAAG+GGG | + | chr1_4:42309825-42309844 | Msa0163900:intron | 25.0% |
| !! | ACAAAGATGGAGAAAAATTT+TGG | + | chr1_4:42309873-42309892 | Msa0163900:intron | 25.0% |
| !!! | TAAGTGTTTTATTTGGTTAG+TGG | - | chr1_4:42310157-42310176 | None:intergenic | 25.0% |
| !!! | GGAAGATTAAGTGTTTTATT+TGG | - | chr1_4:42310164-42310183 | None:intergenic | 25.0% |
| !! | ATTTTTATGTTGGGAAAAAC+GGG | - | chr1_4:42310515-42310534 | None:intergenic | 25.0% |
| !! | GATTTTTATGTTGGGAAAAA+CGG | - | chr1_4:42310516-42310535 | None:intergenic | 25.0% |
| ! | GTTCAACATAATAAAAGTCT+TGG | + | chr1_4:42310665-42310684 | Msa0163900:intron | 25.0% |
| ! | GATGTCTTATGATGATTATT+AGG | - | chr1_4:42311142-42311161 | None:intergenic | 25.0% |
| !!! | TTAAGTTGATAAGAGTTGTT+TGG | - | chr1_4:42311208-42311227 | None:intergenic | 25.0% |
| ! | ATTGCATACTCATTAAAGTT+GGG | - | chr1_4:42311517-42311536 | None:intergenic | 25.0% |
| !! | GATGAAAAGTTGTGATTTTT+AGG | - | chr1_4:42312088-42312107 | None:intergenic | 25.0% |
| ! | GATGATAATTAGATGCTATT+TGG | - | chr1_4:42312131-42312150 | None:intergenic | 25.0% |
| ! | TAGCATCTAATTATCATCTT+AGG | + | chr1_4:42312133-42312152 | Msa0163900:intron | 25.0% |
| !! | ATCAATCTAACATCTTTTCA+TGG | + | chr1_4:42312186-42312205 | Msa0163900:intron | 25.0% |
| ! | TCATGGTTTAATCATCAAAT+CGG | + | chr1_4:42312203-42312222 | Msa0163900:intron | 25.0% |
| !! | GTTAGATTGAGAAAAGTTTT+AGG | - | chr1_4:42312421-42312440 | None:intergenic | 25.0% |
| ! | GAAGTGAGGTTATAAATAAA+AGG | - | chr1_4:42312445-42312464 | None:intergenic | 25.0% |
| ! | CATACAAAAAATCATTGTGA+GGG | + | chr1_4:42313019-42313038 | Msa0163900:intron | 25.0% |
| ! | CAGAAGAGTAAAATAAATCT+TGG | - | chr1_4:42313150-42313169 | None:intergenic | 25.0% |
| !!! | AGCTTTAAATTATGTGTGAA+TGG | + | chr1_4:42313493-42313512 | Msa0163900:intron | 25.0% |
| !!! | CTGTTTTTGTAAGTTATCAT+AGG | - | chr1_4:42313670-42313689 | None:intergenic | 25.0% |
| ! | AATCCATATGCATTGTATTT+GGG | - | chr1_4:42313778-42313797 | None:intergenic | 25.0% |
| ! | AAATCCATATGCATTGTATT+TGG | - | chr1_4:42313779-42313798 | None:intergenic | 25.0% |
| ! | GAGTACTAATTTATCTATTG+CGG | - | chr1_4:42313805-42313824 | None:intergenic | 25.0% |
| ! | AGATAAATTAGTACTCTCTA+AGG | + | chr1_4:42313809-42313828 | Msa0163900:intron | 25.0% |
| ! | TAAGAAATTTCTTGCGAATT+TGG | + | chr1_4:42313879-42313898 | Msa0163900:CDS | 25.0% |
| ! | ATATGAGTATAGAAACAAAG+AGG | - | chr1_4:42313941-42313960 | None:intergenic | 25.0% |
| !!! | TAACAATTCTGAAAGCATTT+TGG | + | chr1_4:42314003-42314022 | Msa0163900:intron | 25.0% |
| !! | ATTTTGGATTATGTTTTACC+AGG | + | chr1_4:42314019-42314038 | Msa0163900:intron | 25.0% |
| ! | GTCTTTATAAACATTGATGA+TGG | + | chr1_4:42314047-42314066 | Msa0163900:CDS | 25.0% |
| ! | TTCTTCAAATTCGAATAGAA+TGG | + | chr1_4:42314274-42314293 | Msa0163900:intron | 25.0% |
| !!! | TTAAGGTTGATAATTGATGA+AGG | + | chr1_4:42314378-42314397 | Msa0163900:CDS | 25.0% |
| TTGACAAGCTAAAAAACCTA+TGG | + | chr1_4:42308982-42309001 | Msa0163900:CDS | 30.0% | |
| TTTGAATTGTGATGGTTTGA+CGG | - | chr1_4:42309024-42309043 | None:intergenic | 30.0% | |
| TAAGAAAATCAATTACTCGG+CGG | - | chr1_4:42309097-42309116 | None:intergenic | 30.0% | |
| !! | GGAAAACATGTTTTTGATTC+GGG | - | chr1_4:42309139-42309158 | None:intergenic | 30.0% |
| ACTTAAGACGATTATATGTC+GGG | - | chr1_4:42309454-42309473 | None:intergenic | 30.0% | |
| ! | AGATGGAGAAAAATTTTGGA+TGG | + | chr1_4:42309877-42309896 | Msa0163900:intron | 30.0% |
| TATACAATGAGAAGCAATCT+TGG | - | chr1_4:42310069-42310088 | None:intergenic | 30.0% | |
| ACGACTACAATCTCAATATT+AGG | + | chr1_4:42310130-42310149 | Msa0163900:intron | 30.0% | |
| CTTCCTTACTTTAGTGAAAA+TGG | + | chr1_4:42310179-42310198 | Msa0163900:intron | 30.0% | |
| !! | AAGCCATTTTCACTAAAGTA+AGG | - | chr1_4:42310185-42310204 | None:intergenic | 30.0% |
| TTAGTGAAAATGGCTTCTAA+TGG | + | chr1_4:42310189-42310208 | Msa0163900:intron | 30.0% | |
| ATTCCATAAGACAATTGTGT+GGG | - | chr1_4:42310302-42310321 | None:intergenic | 30.0% | |
| TATTCCATAAGACAATTGTG+TGG | - | chr1_4:42310303-42310322 | None:intergenic | 30.0% | |
| ACACAATTGTCTTATGGAAT+AGG | + | chr1_4:42310302-42310321 | Msa0163900:intron | 30.0% | |
| ! | TGAATAGAGTATTCTCTCTT+AGG | - | chr1_4:42310448-42310467 | None:intergenic | 30.0% |
| AAAAACTGCTCAAGAACTTA+AGG | + | chr1_4:42310467-42310486 | Msa0163900:intron | 30.0% | |
| AAAACTGCTCAAGAACTTAA+GGG | + | chr1_4:42310468-42310487 | Msa0163900:intron | 30.0% | |
| ! | TTTTTATGTTGGGAAAAACG+GGG | - | chr1_4:42310514-42310533 | None:intergenic | 30.0% |
| AAAATCTTAAACTGTTGCAG+CGG | + | chr1_4:42310636-42310655 | Msa0163900:intron | 30.0% | |
| GACTTATGAGATTTCTGATA+AGG | - | chr1_4:42310699-42310718 | None:intergenic | 30.0% | |
| ATTACGCTCATTTATGTTGT+TGG | - | chr1_4:42311369-42311388 | None:intergenic | 30.0% | |
| CAACATAAATGAGCGTAATT+AGG | + | chr1_4:42311370-42311389 | Msa0163900:intron | 30.0% | |
| TTGCATACTCATTAAAGTTG+GGG | - | chr1_4:42311516-42311535 | None:intergenic | 30.0% | |
| CATTGCATACTCATTAAAGT+TGG | - | chr1_4:42311518-42311537 | None:intergenic | 30.0% | |
| CAACTTTAATGAGTATGCAA+TGG | + | chr1_4:42311516-42311535 | Msa0163900:intron | 30.0% | |
| AAAGAAGTTGTCCATGATTA+TGG | - | chr1_4:42311591-42311610 | None:intergenic | 30.0% | |
| GATCTTAGAAGTAAGAATGA+GGG | - | chr1_4:42311844-42311863 | None:intergenic | 30.0% | |
| TGATCTTAGAAGTAAGAATG+AGG | - | chr1_4:42311845-42311864 | None:intergenic | 30.0% | |
| !!! | AGTTGTGATTTTTAGGTTTC+TGG | - | chr1_4:42312081-42312100 | None:intergenic | 30.0% |
| ATCATCTTAGGCAATATCTA+AGG | + | chr1_4:42312145-42312164 | Msa0163900:intron | 30.0% | |
| GTAAAGAGAAATTAGAAGTG+AGG | - | chr1_4:42312459-42312478 | None:intergenic | 30.0% | |
| !! | TGTGAAAAGAGTATTCTTAG+AGG | - | chr1_4:42312483-42312502 | None:intergenic | 30.0% |
| ! | GTTTTGTGAAGTTATGATGT+TGG | - | chr1_4:42312578-42312597 | None:intergenic | 30.0% |
| !! | GACTAGGTTGATTAATTCTA+GGG | - | chr1_4:42312860-42312879 | None:intergenic | 30.0% |
| !! | AGACTAGGTTGATTAATTCT+AGG | - | chr1_4:42312861-42312880 | None:intergenic | 30.0% |
| !!! | CACAATGATTTTTTGTATGC+AGG | - | chr1_4:42313018-42313037 | None:intergenic | 30.0% |
| GCATACAAAAAATCATTGTG+AGG | + | chr1_4:42313018-42313037 | Msa0163900:intron | 30.0% | |
| AAAAAATCATTGTGAGGGTT+AGG | + | chr1_4:42313024-42313043 | Msa0163900:intron | 30.0% | |
| AAAAATCATTGTGAGGGTTA+GGG | + | chr1_4:42313025-42313044 | Msa0163900:intron | 30.0% | |
| !! | ATAACCAAACAAAAGGTGTT+AGG | + | chr1_4:42313277-42313296 | Msa0163900:intron | 30.0% |
| TTAGATGACAGATAACCATA+GGG | - | chr1_4:42313347-42313366 | None:intergenic | 30.0% | |
| ATTAGATGACAGATAACCAT+AGG | - | chr1_4:42313348-42313367 | None:intergenic | 30.0% | |
| CATCTAATTTCACTATGTAC+TGG | + | chr1_4:42313360-42313379 | Msa0163900:intron | 30.0% | |
| GAATGGCATAGTTGAATTAT+AGG | + | chr1_4:42313510-42313529 | Msa0163900:intron | 30.0% | |
| ! | TGCATTGTATTTGGGTTAAT+GGG | - | chr1_4:42313770-42313789 | None:intergenic | 30.0% |
| ! | ATGCATTGTATTTGGGTTAA+TGG | - | chr1_4:42313771-42313790 | None:intergenic | 30.0% |
| TAACCCAAATACAATGCATA+TGG | + | chr1_4:42313772-42313791 | Msa0163900:intron | 30.0% | |
| AGAAATTTCTTATGCTCATC+AGG | - | chr1_4:42313871-42313890 | None:intergenic | 30.0% | |
| AATTTCTTGCGAATTTGGTT+TGG | + | chr1_4:42313884-42313903 | Msa0163900:CDS | 30.0% | |
| ! | ATTTCTTGCGAATTTGGTTT+GGG | + | chr1_4:42313885-42313904 | Msa0163900:CDS | 30.0% |
| TGTTTATAAAGACATCATCC+TGG | - | chr1_4:42314040-42314059 | None:intergenic | 30.0% | |
| TAAGTGGTAGAAAGAATGTA+TGG | + | chr1_4:42314186-42314205 | Msa0163900:CDS | 30.0% | |
| AAGTGGTAGAAAGAATGTAT+GGG | + | chr1_4:42314187-42314206 | Msa0163900:CDS | 30.0% | |
| ! | ATGGCTAATTGTTTTCTTGT+AGG | + | chr1_4:42314293-42314312 | Msa0163900:intron | 30.0% |
| TGTATCACGAATAATCTTCA+TGG | - | chr1_4:42314448-42314467 | None:intergenic | 30.0% | |
| ATTCGTGATACAGATCTATT+AGG | + | chr1_4:42314456-42314475 | Msa0163900:CDS | 30.0% | |
| !! | TGTTTTCGAGATTTGACCAT+AGG | - | chr1_4:42309001-42309020 | None:intergenic | 35.0% |
| ATCACCTAAGAAGATGATAG+TGG | - | chr1_4:42309051-42309070 | None:intergenic | 35.0% | |
| AAGAAAATCAATTACTCGGC+GGG | - | chr1_4:42309096-42309115 | None:intergenic | 35.0% | |
| !!! | ATGTTTTTGATTCGGGTAAC+GGG | - | chr1_4:42309132-42309151 | None:intergenic | 35.0% |
| !!! | CATGTTTTTGATTCGGGTAA+CGG | - | chr1_4:42309133-42309152 | None:intergenic | 35.0% |
| ! | CAAAAACATGTTTTCCTAGC+TGG | + | chr1_4:42309143-42309162 | Msa0163900:CDS | 35.0% |
| ! | CTAGTGCGTGTTTTATATCA+CGG | - | chr1_4:42309634-42309653 | None:intergenic | 35.0% |
| GTTAAGTGATTATGTTTGGG+TGG | + | chr1_4:42309748-42309767 | Msa0163900:intron | 35.0% | |
| !!! | AAGAGAGTTTTAAAGGGGAA+TGG | + | chr1_4:42309830-42309849 | Msa0163900:intron | 35.0% |
| CTTTCCTCTCAAAACAAAGA+TGG | + | chr1_4:42309860-42309879 | Msa0163900:intron | 35.0% | |
| !!! | TTCTCCATCTTTGTTTTGAG+AGG | - | chr1_4:42309867-42309886 | None:intergenic | 35.0% |
| ATGAGAAGCAATCTTGGTTA+GGG | - | chr1_4:42310063-42310082 | None:intergenic | 35.0% | |
| AATGAGAAGCAATCTTGGTT+AGG | - | chr1_4:42310064-42310083 | None:intergenic | 35.0% | |
| ATCCAAACTTCACAAAAGTC+TGG | + | chr1_4:42310093-42310112 | Msa0163900:intron | 35.0% | |
| GTGTCTCATATGGTCTAAAT+AGG | - | chr1_4:42310272-42310291 | None:intergenic | 35.0% | |
| !! | GGGTATAAAAGTGTCTCATA+TGG | - | chr1_4:42310282-42310301 | None:intergenic | 35.0% |
| ATACCCACACAATTGTCTTA+TGG | + | chr1_4:42310296-42310315 | Msa0163900:intron | 35.0% | |
| AAATTCTACTAGTGCAGCTT+TGG | - | chr1_4:42310350-42310369 | None:intergenic | 35.0% | |
| ! | TAGAGTATTCTCTCTTAGGA+AGG | - | chr1_4:42310444-42310463 | None:intergenic | 35.0% |
| TAATAAAAGTCTTGGCACAC+AGG | + | chr1_4:42310673-42310692 | Msa0163900:intron | 35.0% | |
| AAGAGTTGTTTGGTCAAGTT+GGG | - | chr1_4:42311198-42311217 | None:intergenic | 35.0% | |
| TAAGAGTTGTTTGGTCAAGT+TGG | - | chr1_4:42311199-42311218 | None:intergenic | 35.0% | |
| TAACATCGTACATATGCATG+TGG | + | chr1_4:42311337-42311356 | Msa0163900:intron | 35.0% | |
| TTTGTGCTCATTAAAGTTGG+GGG | - | chr1_4:42311435-42311454 | None:intergenic | 35.0% | |
| CTTTGTGCTCATTAAAGTTG+GGG | - | chr1_4:42311436-42311455 | None:intergenic | 35.0% | |
| CCTTTGTGCTCATTAAAGTT+GGG | - | chr1_4:42311437-42311456 | None:intergenic | 35.0% | |
| TCCTTTGTGCTCATTAAAGT+TGG | - | chr1_4:42311438-42311457 | None:intergenic | 35.0% | |
| TTTGTGCTCATTAAAGTTGG+GGG | - | chr1_4:42311435-42311454 | None:intergenic | 35.0% | |
| CTTTGTGCTCATTAAAGTTG+GGG | - | chr1_4:42311436-42311455 | None:intergenic | 35.0% | |
| CCTTTGTGCTCATTAAAGTT+GGG | - | chr1_4:42311437-42311456 | None:intergenic | 35.0% | |
| ! | TCATTAAAGTTGGGGGTTTT+AGG | - | chr1_4:42311508-42311527 | None:intergenic | 35.0% |
| TGCATACTCATTAAAGTTGG+GGG | - | chr1_4:42311515-42311534 | None:intergenic | 35.0% | |
| CACATTGTTGTCTAAGTTGT+AGG | - | chr1_4:42311552-42311571 | None:intergenic | 35.0% | |
| CTTGTACAACTCCATAATCA+TGG | + | chr1_4:42311577-42311596 | Msa0163900:intron | 35.0% | |
| ! | CAACTTTTCATCTATCCTCA+TGG | + | chr1_4:42312096-42312115 | Msa0163900:intron | 35.0% |
| ATTTGGATGAAAGAACCATG+AGG | - | chr1_4:42312114-42312133 | None:intergenic | 35.0% | |
| !! | AACATGATTAGGTTGAGAGT+TGG | - | chr1_4:42312255-42312274 | None:intergenic | 35.0% |
| TTTCTGCAATAACCAGGTAA+GGG | - | chr1_4:42312328-42312347 | None:intergenic | 35.0% | |
| ! | TTTTCTGCAATAACCAGGTA+AGG | - | chr1_4:42312329-42312348 | None:intergenic | 35.0% |
| !! | CGTACGTTTTTGGAGAAAAA+GGG | - | chr1_4:42312393-42312412 | None:intergenic | 35.0% |
| !! | ACGTACGTTTTTGGAGAAAA+AGG | - | chr1_4:42312394-42312413 | None:intergenic | 35.0% |
| ATATGATTCATGAAGCTGAG+TGG | - | chr1_4:42312637-42312656 | None:intergenic | 35.0% | |
| GTTACTTAGAAATGAAGAGG+CGG | - | chr1_4:42312996-42313015 | None:intergenic | 35.0% | |
| CAGGTTACTTAGAAATGAAG+AGG | - | chr1_4:42312999-42313018 | None:intergenic | 35.0% | |
| ATGGATGCTTGATTCATTCA+CGG | + | chr1_4:42313098-42313117 | Msa0163900:intron | 35.0% | |
| ATGCATAAGAAGCCAAACAA+AGG | + | chr1_4:42313191-42313210 | Msa0163900:intron | 35.0% | |
| TAAGAAGCCAAACAAAGGAT+TGG | + | chr1_4:42313196-42313215 | Msa0163900:intron | 35.0% | |
| AACGAATCCAATCCTTTGTT+TGG | - | chr1_4:42313206-42313225 | None:intergenic | 35.0% | |
| TAGATGACAGATAACCATAG+GGG | - | chr1_4:42313346-42313365 | None:intergenic | 35.0% | |
| CAATTCATTGCATGCAGATT+TGG | + | chr1_4:42313834-42313853 | Msa0163900:CDS | 35.0% | |
| ! | ATTGCATGCAGATTTGGTTA+AGG | + | chr1_4:42313840-42313859 | Msa0163900:CDS | 35.0% |
| AGTTCAACCATCATTGTTAG+TGG | + | chr1_4:42314327-42314346 | Msa0163900:CDS | 35.0% | |
| !! | AGGTTGATAATTGATGAAGG+TGG | + | chr1_4:42314381-42314400 | Msa0163900:CDS | 35.0% |
| ! | TTGATAATTGATGAAGGTGG+TGG | + | chr1_4:42314384-42314403 | Msa0163900:CDS | 35.0% |
| GGAAGAATAATTGCAGCTAT+TGG | - | chr1_4:42314423-42314442 | None:intergenic | 35.0% | |
| TCACGAATAATCTTCATGGA+AGG | - | chr1_4:42314444-42314463 | None:intergenic | 35.0% | |
| !! | TTAGCTTGTCAATGAAACCG+TGG | - | chr1_4:42308974-42308993 | None:intergenic | 40.0% |
| !! | GTGGCTGTTTTGAATTGTGA+TGG | - | chr1_4:42309032-42309051 | None:intergenic | 40.0% |
| ACAGCCACTATCATCTTCTT+AGG | + | chr1_4:42309044-42309063 | Msa0163900:CDS | 40.0% | |
| TTAGGTGATTACTGTGACAG+AGG | + | chr1_4:42309062-42309081 | Msa0163900:CDS | 40.0% | |
| ! | GATGGAGTTTAAGCATTGTG+AGG | + | chr1_4:42309244-42309263 | Msa0163900:CDS | 40.0% |
| TATGAGAAGATGCATGTGCA+AGG | + | chr1_4:42309296-42309315 | Msa0163900:CDS | 40.0% | |
| CAAGGTTCTGTAAATGATGC+TGG | + | chr1_4:42309377-42309396 | Msa0163900:CDS | 40.0% | |
| ACTCCATAGGACTGAAAAGT+GGG | - | chr1_4:42309404-42309423 | None:intergenic | 40.0% | |
| AACTCCATAGGACTGAAAAG+TGG | - | chr1_4:42309405-42309424 | None:intergenic | 40.0% | |
| AGAACCATGAGAAACTCCAT+AGG | - | chr1_4:42309417-42309436 | None:intergenic | 40.0% | |
| ATATGTCGGGACATACTTAC+CGG | - | chr1_4:42309441-42309460 | None:intergenic | 40.0% | |
| AACACAAACTAGTGCGTGTT+TGG | - | chr1_4:42309696-42309715 | None:intergenic | 40.0% | |
| !!! | AGAGTTTTAAAGGGGAATGG+AGG | + | chr1_4:42309833-42309852 | Msa0163900:intron | 40.0% |
| TTTGGATGGTCACAACGATT+TGG | + | chr1_4:42309891-42309910 | Msa0163900:intron | 40.0% | |
| ! | GACCAGACTTTTGTGAAGTT+TGG | - | chr1_4:42310098-42310117 | None:intergenic | 40.0% |
| ! | CAGCTTTGGCAAGACTAAAA+AGG | - | chr1_4:42310336-42310355 | None:intergenic | 40.0% |
| TAGGAGAAAATCTCTCCTCA+AGG | + | chr1_4:42310412-42310431 | Msa0163900:intron | 40.0% | |
| AGGAGAAAATCTCTCCTCAA+GGG | + | chr1_4:42310413-42310432 | Msa0163900:intron | 40.0% | |
| TAGGTGCTCTGATATGTAAC+GGG | - | chr1_4:42310765-42310784 | None:intergenic | 40.0% | |
| CTAGGTGCTCTGATATGTAA+CGG | - | chr1_4:42310766-42310785 | None:intergenic | 40.0% | |
| GTGCAGGTATTAAAGACTAG+AGG | - | chr1_4:42310818-42310837 | None:intergenic | 40.0% | |
| TAATACCTGCACATTACCCA+CGG | + | chr1_4:42310826-42310845 | Msa0163900:intron | 40.0% | |
| GAGGCAACATATACGTAGAA+GGG | + | chr1_4:42310851-42310870 | Msa0163900:intron | 40.0% | |
| AGGCAACATATACGTAGAAG+GGG | + | chr1_4:42310852-42310871 | Msa0163900:intron | 40.0% | |
| TCATTAAAGTTGGGGGCTTT+AGG | - | chr1_4:42311428-42311447 | None:intergenic | 40.0% | |
| CCCAACTTTAATGAGCACAA+AGG | + | chr1_4:42311434-42311453 | Msa0163900:intron | 40.0% | |
| TTAATGAGCACAAAGGATGC+CGG | + | chr1_4:42311441-42311460 | Msa0163900:intron | 40.0% | |
| TCATTAAAGTTGGGGGCTTT+AGG | - | chr1_4:42311428-42311447 | None:intergenic | 40.0% | |
| CCCAACTTTAATGAGCACAA+AGG | + | chr1_4:42311434-42311453 | Msa0163900:intron | 40.0% | |
| GCCTTTGTGCTCATTAAAGT+TGG | - | chr1_4:42311478-42311497 | None:intergenic | 40.0% | |
| TTAATGAGCACAAAGGCTGT+CGG | + | chr1_4:42311481-42311500 | Msa0163900:intron | 40.0% | |
| TGTCTTGAAGTTGCATGAGT+CGG | - | chr1_4:42311631-42311650 | None:intergenic | 40.0% | |
| GAAGTTCCAGAAGTCTGTTT+AGG | - | chr1_4:42311803-42311822 | None:intergenic | 40.0% | |
| AGTAAGAATGAGGGTTGTCT+AGG | - | chr1_4:42311835-42311854 | None:intergenic | 40.0% | |
| ! | GATCGCATCGGAACAATTTT+GGG | + | chr1_4:42311888-42311907 | Msa0163900:intron | 40.0% |
| ! | TGCGATTTTCTGCAATAACC+AGG | - | chr1_4:42312334-42312353 | None:intergenic | 40.0% |
| ! | TTAGGCAGAACGTACGTTTT+TGG | - | chr1_4:42312403-42312422 | None:intergenic | 40.0% |
| TTGACCTTAGCTCAAACTCA+CGG | - | chr1_4:42312896-42312915 | None:intergenic | 40.0% | |
| ! | TTGCTCTTGTAGTCCTTTTG+TGG | - | chr1_4:42312945-42312964 | None:intergenic | 40.0% |
| CAAAAGGACTACAAGAGCAA+AGG | + | chr1_4:42312945-42312964 | Msa0163900:intron | 40.0% | |
| ! | TCATTCACGGTTTTGCAATG+AGG | + | chr1_4:42313111-42313130 | Msa0163900:intron | 40.0% |
| ! | CATTCACGGTTTTGCAATGA+GGG | + | chr1_4:42313112-42313131 | Msa0163900:intron | 40.0% |
| ! | GTTTTGCAATGAGGGCAATA+AGG | + | chr1_4:42313120-42313139 | Msa0163900:intron | 40.0% |
| ACAAAGGATTGGATTCGTTC+TGG | + | chr1_4:42313207-42313226 | Msa0163900:intron | 40.0% | |
| TGTGCAAAGACTCAAGTTCA+CGG | + | chr1_4:42313315-42313334 | Msa0163900:intron | 40.0% | |
| !! | TTTGGTTTGGGTTCATGAAG+AGG | + | chr1_4:42313897-42313916 | Msa0163900:CDS | 40.0% |
| GAATGTATGGGATATTCCAG+AGG | + | chr1_4:42314199-42314218 | Msa0163900:CDS | 40.0% | |
| ATGGTGACCACTAACAATGA+TGG | - | chr1_4:42314337-42314356 | None:intergenic | 40.0% | |
| ! | CTTCAACATGGAGTTTTGCA+TGG | - | chr1_4:42314356-42314375 | None:intergenic | 40.0% |
| CATGCAAAACTCCATGTTGA+AGG | + | chr1_4:42314354-42314373 | Msa0163900:CDS | 40.0% | |
| AACTCCATGTTGAAGGCTTA+AGG | + | chr1_4:42314361-42314380 | Msa0163900:CDS | 40.0% | |
| TCAACCTTAAGCCTTCAACA+TGG | - | chr1_4:42314368-42314387 | None:intergenic | 40.0% | |
| TGTCAGAATCCCATGAAGCA+AGG | + | chr1_4:42308925-42308944 | Msa0163900:CDS | 45.0% | |
| GCATACGATCCTTGCTTCAT+GGG | - | chr1_4:42308937-42308956 | None:intergenic | 45.0% | |
| AGCATACGATCCTTGCTTCA+TGG | - | chr1_4:42308938-42308957 | None:intergenic | 45.0% | |
| !!! | TTTTGATTCGGGTAACGGGT+TGG | - | chr1_4:42309128-42309147 | None:intergenic | 45.0% |
| ! | GACGGGTCAGAATTTTCTGA+GGG | + | chr1_4:42309218-42309237 | Msa0163900:CDS | 45.0% |
| ! | ACGGGTCAGAATTTTCTGAG+GGG | + | chr1_4:42309219-42309238 | Msa0163900:CDS | 45.0% |
| !! | AGAATTTTCTGAGGGGTGGA+TGG | + | chr1_4:42309226-42309245 | Msa0163900:CDS | 45.0% |
| ! | AAGCATTGTGAGGAGAGAGA+AGG | + | chr1_4:42309254-42309273 | Msa0163900:CDS | 45.0% |
| AGCATTGTGAGGAGAGAGAA+GGG | + | chr1_4:42309255-42309274 | Msa0163900:CDS | 45.0% | |
| CAGTCCTATGGAGTTTCTCA+TGG | + | chr1_4:42309410-42309429 | Msa0163900:CDS | 45.0% | |
| TTAGGAAGGAGTAACCCTTG+AGG | - | chr1_4:42310430-42310449 | None:intergenic | 45.0% | |
| ! | CTCTGATATGTAACGGGATG+GGG | - | chr1_4:42310759-42310778 | None:intergenic | 45.0% |
| ! | GCTCTGATATGTAACGGGAT+GGG | - | chr1_4:42310760-42310779 | None:intergenic | 45.0% |
| ! | TGCTCTGATATGTAACGGGA+TGG | - | chr1_4:42310761-42310780 | None:intergenic | 45.0% |
| CGAGGCAACATATACGTAGA+AGG | + | chr1_4:42310850-42310869 | Msa0163900:intron | 45.0% | |
| CGCTCATTTATGTTGTTGGC+TGG | - | chr1_4:42311365-42311384 | None:intergenic | 45.0% | |
| TCTTCAACGTGTGAGCACAA+AGG | + | chr1_4:42311394-42311413 | Msa0163900:intron | 45.0% | |
| TAATGAGCACAAAGGATGCC+GGG | + | chr1_4:42311442-42311461 | Msa0163900:intron | 45.0% | |
| TAATGAGCACAAAGGCTGTC+GGG | + | chr1_4:42311482-42311501 | Msa0163900:intron | 45.0% | |
| CAGTCACCTAAACAGACTTC+TGG | + | chr1_4:42311794-42311813 | Msa0163900:intron | 45.0% | |
| ! | GGATCGCATCGGAACAATTT+TGG | + | chr1_4:42311887-42311906 | Msa0163900:intron | 45.0% |
| ! | ACTAACAGTGTTACTCGCAG+TGG | + | chr1_4:42311913-42311932 | Msa0163900:intron | 45.0% |
| GCGAGCGATGAATGTCAATA+CGG | + | chr1_4:42312055-42312074 | Msa0163900:intron | 45.0% | |
| GTTGGTGCGAATTGGGATTA+GGG | - | chr1_4:42312237-42312256 | None:intergenic | 45.0% | |
| ! | AGTTGGTGCGAATTGGGATT+AGG | - | chr1_4:42312238-42312257 | None:intergenic | 45.0% |
| !! | GTTGAGAGTTGGTGCGAATT+GGG | - | chr1_4:42312244-42312263 | None:intergenic | 45.0% |
| TCAGAAGAGAGGAGAACAAG+AGG | - | chr1_4:42312362-42312381 | None:intergenic | 45.0% | |
| GGGAGAAAAAGTCAGAAGAG+AGG | - | chr1_4:42312373-42312392 | None:intergenic | 45.0% | |
| CTTATCCCCGAAATATCCTC+CGG | + | chr1_4:42312771-42312790 | Msa0163900:intron | 45.0% | |
| TTATCCCCGAAATATCCTCC+GGG | + | chr1_4:42312772-42312791 | Msa0163900:intron | 45.0% | |
| AAGTCTCCCGGAGGATATTT+CGG | - | chr1_4:42312781-42312800 | None:intergenic | 45.0% | |
| AGCTCAAACTCACGGATACA+TGG | - | chr1_4:42312888-42312907 | None:intergenic | 45.0% | |
| GTATCCGTGAGTTTGAGCTA+AGG | + | chr1_4:42312889-42312908 | Msa0163900:intron | 45.0% | |
| !! | TCCTTTTGTGGCTGAGTTGA+GGG | - | chr1_4:42312933-42312952 | None:intergenic | 45.0% |
| AGAGATTGCCCTCAGGAAAA+GGG | - | chr1_4:42313072-42313091 | None:intergenic | 45.0% | |
| !!! | TGTTTTGAGAGATTGCCCTC+AGG | - | chr1_4:42313079-42313098 | None:intergenic | 45.0% |
| GAGGGCAATCTCTCAAAACA+TGG | + | chr1_4:42313079-42313098 | Msa0163900:intron | 45.0% | |
| ! | AGCGCCTAACACCTTTTGTT+TGG | - | chr1_4:42313284-42313303 | None:intergenic | 45.0% |
| ACACATACCATTGCCAACAC+AGG | - | chr1_4:42313469-42313488 | None:intergenic | 45.0% | |
| ! | AAGTTGATTGCTGTCCATGC+TGG | + | chr1_4:42314083-42314102 | Msa0163900:CDS | 45.0% |
| AGTTGATTGCTGTCCATGCT+GGG | + | chr1_4:42314084-42314103 | Msa0163900:CDS | 45.0% | |
| AGCTTGAACCATAGGACTTC+GGG | - | chr1_4:42314165-42314184 | None:intergenic | 45.0% | |
| GAGCTTGAACCATAGGACTT+CGG | - | chr1_4:42314166-42314185 | None:intergenic | 45.0% | |
| CCACTTAGAGCTTGAACCAT+AGG | - | chr1_4:42314173-42314192 | None:intergenic | 45.0% | |
| !! | CCTATGGTTCAAGCTCTAAG+TGG | + | chr1_4:42314170-42314189 | Msa0163900:CDS | 45.0% |
| AAGAAGCAAGCTATCACCTC+TGG | - | chr1_4:42314218-42314237 | None:intergenic | 45.0% | |
| !! | AAATAAAAATATTAGAATTT+GGG | - | chr1_4:42312512-42312531 | None:intergenic | 5.0% |
| !! | AAAATAAAAATATTAGAATT+TGG | - | chr1_4:42312513-42312532 | None:intergenic | 5.0% |
| GCAAGGATCGTATGCTGCAT+CGG | + | chr1_4:42308942-42308961 | Msa0163900:CDS | 50.0% | |
| CGAAGTCATGGTTTCCAGCT+AGG | - | chr1_4:42309160-42309179 | None:intergenic | 50.0% | |
| GAAAATTCTGACCCGTCGCA+GGG | - | chr1_4:42309215-42309234 | None:intergenic | 50.0% | |
| AGAAAATTCTGACCCGTCGC+AGG | - | chr1_4:42309216-42309235 | None:intergenic | 50.0% | |
| ! | CGACGGGTCAGAATTTTCTG+AGG | + | chr1_4:42309217-42309236 | Msa0163900:CDS | 50.0% |
| !! | GGTCAGAATTTTCTGAGGGG+TGG | + | chr1_4:42309222-42309241 | Msa0163900:CDS | 50.0% |
| ATTGTGAGGAGAGAGAAGGG+TGG | + | chr1_4:42309258-42309277 | Msa0163900:CDS | 50.0% | |
| GAGAGAGAAGGGTGGTTTAC+TGG | + | chr1_4:42309266-42309285 | Msa0163900:CDS | 50.0% | |
| GAAGGGTGGTTTACTGGTGA+CGG | + | chr1_4:42309272-42309291 | Msa0163900:CDS | 50.0% | |
| AGATGCATGTGCAAGGCAGA+AGG | + | chr1_4:42309303-42309322 | Msa0163900:CDS | 50.0% | |
| GCTAAGGGTCGTGTGTATCA+AGG | + | chr1_4:42309359-42309378 | Msa0163900:CDS | 50.0% | |
| !! | GGTCCCACTTTTCAGTCCTA+TGG | + | chr1_4:42309398-42309417 | Msa0163900:CDS | 50.0% |
| ! | GGAGTTTCTCATGGTTCTGC+CGG | + | chr1_4:42309419-42309438 | Msa0163900:CDS | 50.0% |
| GAGCACCTAGACACAAAGTG+AGG | + | chr1_4:42310776-42310795 | Msa0163900:intron | 50.0% | |
| GGACTCCTCACTTTGTGTCT+AGG | - | chr1_4:42310784-42310803 | None:intergenic | 50.0% | |
| GTATATGTTGCCTCGACCGT+GGG | - | chr1_4:42310845-42310864 | None:intergenic | 50.0% | |
| CTCATGACTACACGTGCGAA+AGG | + | chr1_4:42311866-42311885 | Msa0163900:intron | 50.0% | |
| !! | GGTTGAGAGTTGGTGCGAAT+TGG | - | chr1_4:42312245-42312264 | None:intergenic | 50.0% |
| ! | AAGCTAGTCTCACCCTTACC+TGG | + | chr1_4:42312313-42312332 | Msa0163900:intron | 50.0% |
| AGTCTCCCGGAGGATATTTC+GGG | - | chr1_4:42312780-42312799 | None:intergenic | 50.0% | |
| CGGATACATGGCAGTAGACT+AGG | - | chr1_4:42312876-42312895 | None:intergenic | 50.0% | |
| !!! | GAGTTGAGGGGAGTTTTGGA+AGG | - | chr1_4:42312920-42312939 | None:intergenic | 50.0% |
| !! | CCTTTTGTGGCTGAGTTGAG+GGG | - | chr1_4:42312932-42312951 | None:intergenic | 50.0% |
| ! | GTCCTTTTGTGGCTGAGTTG+AGG | - | chr1_4:42312934-42312953 | None:intergenic | 50.0% |
| GAAGAGGCGGTCTTGATATG+TGG | - | chr1_4:42312983-42313002 | None:intergenic | 50.0% | |
| GAGAGATTGCCCTCAGGAAA+AGG | - | chr1_4:42313073-42313092 | None:intergenic | 50.0% | |
| AGTTCACGGTATAGCCCCTA+TGG | + | chr1_4:42313329-42313348 | Msa0163900:intron | 50.0% | |
| TATGCAGCTTCTGCCTGTGT+TGG | + | chr1_4:42313453-42313472 | Msa0163900:intron | 50.0% | |
| ! | GGTTTGGGTTCATGAAGAGG+TGG | + | chr1_4:42313900-42313919 | Msa0163900:intron | 50.0% |
| TCGAGATACCCGAAGTCCTA+TGG | + | chr1_4:42314154-42314173 | Msa0163900:CDS | 50.0% | |
| ! | TGCTGCATCGGTGACATCCA+CGG | + | chr1_4:42308954-42308973 | Msa0163900:CDS | 55.0% |
| TCAATTACTCGGCGGGTGTG+AGG | - | chr1_4:42309089-42309108 | None:intergenic | 55.0% | |
| TGCATGTGCAAGGCAGAAGG+TGG | + | chr1_4:42309306-42309325 | Msa0163900:CDS | 55.0% | |
| !! | AGACTAGAGGCGTTCGTGAG+TGG | - | chr1_4:42310805-42310824 | None:intergenic | 55.0% |
| CGTATATGTTGCCTCGACCG+TGG | - | chr1_4:42310846-42310865 | None:intergenic | 55.0% | |
| CGTGTGAGCACAAAGGCAAC+CGG | + | chr1_4:42311401-42311420 | Msa0163900:intron | 55.0% | |
| GTGTGAGCACAAAGGCAACC+GGG | + | chr1_4:42311402-42311421 | Msa0163900:intron | 55.0% | |
| !! | AAAGTTGGGGGCTTTAGGCC+CGG | - | chr1_4:42311423-42311442 | None:intergenic | 55.0% |
| !! | AAAGTTGGGGGCTTTAGGCC+CGG | - | chr1_4:42311423-42311442 | None:intergenic | 55.0% |
| CACGTGCGAAAGGATCGCAT+CGG | + | chr1_4:42311876-42311895 | Msa0163900:intron | 55.0% | |
| CAGTTGCGAGCTCAATGGTC+TGG | + | chr1_4:42311952-42311971 | Msa0163900:intron | 55.0% | |
| ACTCGCAGTTGCGAGTGTCT+TGG | + | chr1_4:42311996-42312015 | Msa0163900:intron | 55.0% | |
| CTCGCAGTTGCGAGTGTCTT+GGG | + | chr1_4:42311997-42312016 | Msa0163900:intron | 55.0% | |
| TCGCAGTTGCGAGTGTCTTG+GGG | + | chr1_4:42311998-42312017 | Msa0163900:intron | 55.0% | |
| GTCTCCCGGAGGATATTTCG+GGG | - | chr1_4:42312779-42312798 | None:intergenic | 55.0% | |
| GCACACAGGAGAAAGTCTCC+CGG | - | chr1_4:42312793-42312812 | None:intergenic | 55.0% | |
| !! | GGCTGAGTTGAGGGGAGTTT+TGG | - | chr1_4:42312924-42312943 | None:intergenic | 55.0% |
| CCCCTCAACTCAGCCACAAA+AGG | + | chr1_4:42312929-42312948 | Msa0163900:intron | 55.0% | |
| GGGTTAGGGTGAACAAGCTG+CGG | + | chr1_4:42313039-42313058 | Msa0163900:intron | 55.0% | |
| ! | GCCACACACCCTTTTCCTGA+GGG | + | chr1_4:42313061-42313080 | Msa0163900:intron | 55.0% |
| ! | GCTTCTGCCTGTGTTGGCAA+TGG | + | chr1_4:42313459-42313478 | Msa0163900:intron | 55.0% |
| GATTGCTGTCCATGCTGGGT+TGG | + | chr1_4:42314088-42314107 | Msa0163900:CDS | 55.0% | |
| ! | GTCCATGCTGGGTTGGAGAA+AGG | + | chr1_4:42314095-42314114 | Msa0163900:CDS | 55.0% |
| TGCCTTTCTCCAACCCAGCA+TGG | - | chr1_4:42314100-42314119 | None:intergenic | 55.0% | |
| AATTCTGACCCGTCGCAGGG+TGG | - | chr1_4:42309212-42309231 | None:intergenic | 60.0% | |
| GTGCAAGGCAGAAGGTGGAG+TGG | + | chr1_4:42309311-42309330 | Msa0163900:CDS | 60.0% | |
| CTCGACCGTGGGTAATGTGC+AGG | - | chr1_4:42310834-42310853 | None:intergenic | 60.0% | |
| CTGCACATTACCCACGGTCG+AGG | + | chr1_4:42310832-42310851 | Msa0163900:intron | 60.0% | |
| ! | GTGTTACTCGCAGTGGCGAG+TGG | + | chr1_4:42311920-42311939 | Msa0163900:intron | 60.0% |
| TTGAGCTCGCAACTGCGAGC+AGG | - | chr1_4:42311947-42311966 | None:intergenic | 60.0% | |
| GCTCGCAGTTGCGAGCTCAA+TGG | + | chr1_4:42311947-42311966 | Msa0163900:intron | 60.0% | |
| ! | CTCAATGGTCTGGCTCGCAG+TGG | + | chr1_4:42311962-42311981 | Msa0163900:intron | 60.0% |
| CACAGGAGAAAGTCTCCCGG+AGG | - | chr1_4:42312790-42312809 | None:intergenic | 60.0% | |
| ! | GGCCACACACCCTTTTCCTG+AGG | + | chr1_4:42313060-42313079 | Msa0163900:intron | 60.0% |
| ! | GCCCTCAGGAAAAGGGTGTG+TGG | - | chr1_4:42313065-42313084 | None:intergenic | 60.0% |
| AGGCGGCGAAGGCGAAGTCA+TGG | - | chr1_4:42309172-42309191 | None:intergenic | 65.0% | |
| ATATGCCGCGATCCGCGCGA+GGG | - | chr1_4:42312819-42312838 | None:intergenic | 65.0% | |
| TATATGCCGCGATCCGCGCG+AGG | - | chr1_4:42312820-42312839 | None:intergenic | 65.0% | |
| GCGCGGATCGCGGCATATAC+AGG | + | chr1_4:42312821-42312840 | Msa0163900:intron | 65.0% | |
| GAGGTGGAGGAAGGCGGCGA+AGG | - | chr1_4:42309183-42309202 | None:intergenic | 70.0% | |
| CGGGAGGAGGTGGAGGAAGG+CGG | - | chr1_4:42309189-42309208 | None:intergenic | 70.0% | |
| TGGCGGGAGGAGGTGGAGGA+AGG | - | chr1_4:42309192-42309211 | None:intergenic | 70.0% | |
| TCTGACCCGTCGCAGGGTGG+CGG | - | chr1_4:42309209-42309228 | None:intergenic | 70.0% | |
| !! | AGGGTGGCGGGAGGAGGTGG+AGG | - | chr1_4:42309196-42309215 | None:intergenic | 75.0% |
| CTCCTCCCGCCACCCTGCGA+CGG | + | chr1_4:42309200-42309219 | Msa0163900:CDS | 75.0% | |
| TCCTCCCGCCACCCTGCGAC+GGG | + | chr1_4:42309201-42309220 | Msa0163900:CDS | 75.0% | |
| CTGACCCGTCGCAGGGTGGC+GGG | - | chr1_4:42309208-42309227 | None:intergenic | 75.0% | |
| CCTGTGTGCCCACCCTCGCG+CGG | + | chr1_4:42312804-42312823 | Msa0163900:intron | 75.0% | |
| !!! | CGCAGGGTGGCGGGAGGAGG+TGG | - | chr1_4:42309199-42309218 | None:intergenic | 80.0% |
| !!! | CGTCGCAGGGTGGCGGGAGG+AGG | - | chr1_4:42309202-42309221 | None:intergenic | 80.0% |
| !!! | ACCCGTCGCAGGGTGGCGGG+AGG | - | chr1_4:42309205-42309224 | None:intergenic | 80.0% |
| ! | CCGCGCGAGGGTGGGCACAC+AGG | - | chr1_4:42312807-42312826 | None:intergenic | 80.0% |
| ! | GCCCACCCTCGCGCGGATCG+CGG | + | chr1_4:42312811-42312830 | Msa0163900:intron | 80.0% |
| ! | GCCGCGATCCGCGCGAGGGT+GGG | - | chr1_4:42312815-42312834 | None:intergenic | 80.0% |
| ! | TGCCGCGATCCGCGCGAGGG+TGG | - | chr1_4:42312816-42312835 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42308924 | 42314485 | 42308924 | ID=Msa0163900;Name=Msa0163900 |
| chr1_4 | mRNA | 42308924 | 42314485 | 42308924 | ID=Msa0163900-mRNA-1;Parent=Msa0163900;Name=Msa0163900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.8|0.5|0.6|5|0|345 |
| chr1_4 | exon | 42308924 | 42309490 | 42308924 | ID=Msa0163900-mRNA-1:exon:12264;Parent=Msa0163900-mRNA-1 |
| chr1_4 | exon | 42313460 | 42313480 | 42313460 | ID=Msa0163900-mRNA-1:exon:12265;Parent=Msa0163900-mRNA-1 |
| chr1_4 | exon | 42313820 | 42313918 | 42313820 | ID=Msa0163900-mRNA-1:exon:12266;Parent=Msa0163900-mRNA-1 |
| chr1_4 | exon | 42314041 | 42314220 | 42314041 | ID=Msa0163900-mRNA-1:exon:12267;Parent=Msa0163900-mRNA-1 |
| chr1_4 | exon | 42314315 | 42314485 | 42314315 | ID=Msa0163900-mRNA-1:exon:12268;Parent=Msa0163900-mRNA-1 |
| chr1_4 | CDS | 42308924 | 42309490 | 42308924 | ID=Msa0163900-mRNA-1:cds;Parent=Msa0163900-mRNA-1 |
| chr1_4 | CDS | 42313460 | 42313480 | 42313460 | ID=Msa0163900-mRNA-1:cds;Parent=Msa0163900-mRNA-1 |
| chr1_4 | CDS | 42313820 | 42313918 | 42313820 | ID=Msa0163900-mRNA-1:cds;Parent=Msa0163900-mRNA-1 |
| chr1_4 | CDS | 42314041 | 42314220 | 42314041 | ID=Msa0163900-mRNA-1:cds;Parent=Msa0163900-mRNA-1 |
| chr1_4 | CDS | 42314315 | 42314485 | 42314315 | ID=Msa0163900-mRNA-1:cds;Parent=Msa0163900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
