Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164430 | XP_003590326.1 | 96.988 | 332 | 10 | 0 | 1 | 332 | 1 | 332 | 0.0 | 674 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164430 | sp|Q8LFU0|NFYAA_ARATH | 44.518 | 301 | 109 | 13 | 29 | 325 | 13 | 259 | 1.59e-60 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164430 | G7I8J1 | 96.988 | 332 | 10 | 0 | 1 | 332 | 1 | 332 | 0.0 | 674 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0164430 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162660 | Msa0164430 | 0.965007 | 4.751330e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164430 | MtrunA17_Chr1g0177091 | 96.988 | 332 | 10 | 0 | 1 | 332 | 1 | 332 | 0.0 | 674 |
| Msa0164430 | MtrunA17_Chr7g0267581 | 71.125 | 329 | 86 | 6 | 1 | 324 | 1 | 325 | 1.14e-162 | 457 |
| Msa0164430 | MtrunA17_Chr8g0352251 | 50.400 | 125 | 49 | 4 | 128 | 241 | 109 | 231 | 7.03e-30 | 115 |
| Msa0164430 | MtrunA17_Chr2g0300261 | 49.624 | 133 | 49 | 4 | 116 | 231 | 14 | 145 | 1.53e-29 | 113 |
| Msa0164430 | MtrunA17_Chr2g0292411 | 50.467 | 107 | 51 | 1 | 133 | 237 | 80 | 186 | 2.12e-28 | 109 |
| Msa0164430 | MtrunA17_Chr3g0103391 | 49.167 | 120 | 45 | 4 | 127 | 232 | 125 | 242 | 3.02e-27 | 109 |
| Msa0164430 | MtrunA17_Chr8g0343451 | 47.414 | 116 | 46 | 4 | 120 | 222 | 110 | 223 | 5.01e-26 | 105 |
| Msa0164430 | MtrunA17_Chr2g0329811 | 36.158 | 177 | 101 | 4 | 95 | 260 | 108 | 283 | 1.44e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164430 | AT5G06510.1 | 44.518 | 301 | 109 | 13 | 29 | 325 | 13 | 259 | 1.62e-61 | 197 |
| Msa0164430 | AT5G06510.5 | 44.518 | 301 | 109 | 13 | 29 | 325 | 13 | 259 | 1.62e-61 | 197 |
| Msa0164430 | AT5G06510.2 | 44.518 | 301 | 109 | 13 | 29 | 325 | 13 | 259 | 1.62e-61 | 197 |
| Msa0164430 | AT5G06510.6 | 44.518 | 301 | 109 | 13 | 29 | 325 | 13 | 259 | 1.62e-61 | 197 |
| Msa0164430 | AT3G05690.1 | 43.925 | 321 | 111 | 17 | 27 | 326 | 12 | 284 | 8.16e-56 | 184 |
| Msa0164430 | AT5G06510.3 | 48.511 | 235 | 76 | 9 | 93 | 325 | 19 | 210 | 1.14e-55 | 181 |
| Msa0164430 | AT3G05690.2 | 43.925 | 321 | 111 | 17 | 27 | 326 | 49 | 321 | 6.12e-55 | 182 |
| Msa0164430 | AT5G06510.4 | 51.269 | 197 | 58 | 8 | 131 | 325 | 4 | 164 | 5.84e-49 | 162 |
| Msa0164430 | AT5G06510.7 | 51.269 | 197 | 58 | 8 | 131 | 325 | 4 | 164 | 5.84e-49 | 162 |
| Msa0164430 | AT2G34720.1 | 40.462 | 173 | 86 | 5 | 97 | 256 | 19 | 187 | 3.99e-32 | 119 |
| Msa0164430 | AT1G30500.1 | 49.580 | 119 | 54 | 1 | 127 | 239 | 53 | 171 | 1.17e-31 | 117 |
| Msa0164430 | AT1G30500.2 | 47.656 | 128 | 57 | 1 | 122 | 239 | 48 | 175 | 5.86e-31 | 115 |
| Msa0164430 | AT2G34720.2 | 46.377 | 138 | 58 | 4 | 132 | 256 | 18 | 152 | 3.36e-30 | 113 |
| Msa0164430 | AT2G34720.3 | 46.377 | 138 | 58 | 4 | 132 | 256 | 18 | 152 | 3.36e-30 | 113 |
| Msa0164430 | AT5G12840.4 | 34.615 | 286 | 149 | 12 | 1 | 266 | 1 | 268 | 5.80e-30 | 115 |
| Msa0164430 | AT5G12840.2 | 34.615 | 286 | 149 | 12 | 1 | 266 | 1 | 268 | 5.80e-30 | 115 |
| Msa0164430 | AT1G72830.1 | 42.045 | 176 | 78 | 7 | 132 | 293 | 135 | 300 | 8.89e-30 | 116 |
| Msa0164430 | AT5G12840.5 | 45.695 | 151 | 64 | 5 | 127 | 266 | 126 | 269 | 3.14e-29 | 113 |
| Msa0164430 | AT5G12840.3 | 45.695 | 151 | 64 | 5 | 127 | 266 | 126 | 269 | 3.14e-29 | 113 |
| Msa0164430 | AT5G12840.1 | 45.695 | 151 | 64 | 5 | 127 | 266 | 126 | 269 | 3.14e-29 | 113 |
| Msa0164430 | AT1G72830.2 | 41.808 | 177 | 78 | 8 | 132 | 293 | 135 | 301 | 3.89e-28 | 112 |
| Msa0164430 | AT1G17590.3 | 59.259 | 81 | 31 | 2 | 143 | 223 | 153 | 231 | 5.84e-26 | 105 |
| Msa0164430 | AT1G17590.2 | 59.259 | 81 | 31 | 2 | 143 | 223 | 153 | 231 | 5.84e-26 | 105 |
| Msa0164430 | AT1G17590.4 | 59.259 | 81 | 31 | 2 | 143 | 223 | 153 | 231 | 5.84e-26 | 105 |
| Msa0164430 | AT1G17590.1 | 59.259 | 81 | 31 | 2 | 143 | 223 | 153 | 231 | 5.84e-26 | 105 |
| Msa0164430 | AT1G54160.1 | 64.000 | 75 | 26 | 1 | 149 | 223 | 164 | 237 | 5.01e-25 | 103 |
| Msa0164430 | AT3G20910.1 | 51.402 | 107 | 36 | 4 | 133 | 225 | 126 | 230 | 1.90e-24 | 101 |
| Msa0164430 | AT3G14020.2 | 51.961 | 102 | 40 | 3 | 132 | 229 | 140 | 236 | 1.19e-23 | 99.4 |
| Msa0164430 | AT3G14020.1 | 51.961 | 102 | 40 | 3 | 132 | 229 | 140 | 236 | 1.19e-23 | 99.4 |
| Msa0164430 | AT1G72830.3 | 38.182 | 165 | 75 | 6 | 132 | 293 | 135 | 275 | 2.00e-21 | 93.2 |
Find 74 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACGGGCTCTTCTCAACTTA+TGG | 0.210491 | 1_4:-43918309 | Msa0164430:CDS |
| AACACAAAAGTTTCTGCTAA+TGG | 0.270945 | 1_4:-43917467 | Msa0164430:CDS |
| CGGATCTACTGTCCACTCTT+TGG | 0.272014 | 1_4:-43917234 | Msa0164430:CDS |
| GTTGAACAATTGTTTGATAA+AGG | 0.289283 | 1_4:-43918804 | Msa0164430:CDS |
| TATGGATCTCAACCTGTTTA+TGG | 0.294520 | 1_4:-43918918 | Msa0164430:CDS |
| TTGGAAAGCTCTAGTGAAAA+AGG | 0.317460 | 1_4:+43918870 | None:intergenic |
| TGACGCGATTCGTGCATATA+TGG | 0.329752 | 1_4:+43917536 | None:intergenic |
| CTGTGCAAAATATCCTTATA+TGG | 0.336858 | 1_4:-43918340 | Msa0164430:CDS |
| GTATTGTCATGCCAACAAAA+TGG | 0.358807 | 1_4:-43917187 | Msa0164430:CDS |
| CCGTAAAATTGATCCATATA+AGG | 0.372097 | 1_4:+43918327 | None:intergenic |
| TCATGTTCTTTAAGATAAAC+AGG | 0.380584 | 1_4:+43919008 | None:intergenic |
| ACCTCTGACCCCGAGACGTT+TGG | 0.381733 | 1_4:+43917308 | None:intergenic |
| AGTTCTTACTCGGAGCAATT+TGG | 0.382158 | 1_4:+43918838 | None:intergenic |
| GGATCTACTGTCCACTCTTT+GGG | 0.389114 | 1_4:-43917233 | Msa0164430:CDS |
| AGCAATTTGGTCTATGTAGT+TGG | 0.394015 | 1_4:+43918851 | None:intergenic |
| TTGGGAGACATGATCGATAC+TGG | 0.406979 | 1_4:-43917215 | Msa0164430:CDS |
| CAAGACTCTCCGCCATAAAC+AGG | 0.413188 | 1_4:+43918906 | None:intergenic |
| TGCTTAGCATTCACGTATGT+TGG | 0.430698 | 1_4:+43917744 | None:intergenic |
| CATCTGTGACTTCAGCTCCA+TGG | 0.437594 | 1_4:-43918953 | Msa0164430:CDS |
| AGCTTTACTGTCAATCATAT+CGG | 0.452099 | 1_4:-43917254 | Msa0164430:CDS |
| GGAGGCAGTCCAAACGTCTC+GGG | 0.456102 | 1_4:-43917317 | Msa0164430:CDS |
| TTTATTCTGAAGCACAGCTT+TGG | 0.466385 | 1_4:+43917686 | None:intergenic |
| GATAAGGTTGCTTGATGATT+CGG | 0.479300 | 1_4:+43918533 | None:intergenic |
| TGTTAAGATTTACCATAGGC+TGG | 0.484839 | 1_4:+43918456 | None:intergenic |
| ACAAAATGGTTTGCAGCAGC+TGG | 0.492247 | 1_4:-43917173 | Msa0164430:CDS |
| AAACGACCACCGCATCCTCT+TGG | 0.498137 | 1_4:+43917494 | None:intergenic |
| AAAGTTTCTGCTAATGGAAA+CGG | 0.509349 | 1_4:-43917461 | Msa0164430:CDS |
| TGGAACTTTAAATTCGTCAA+AGG | 0.512980 | 1_4:-43917348 | Msa0164430:CDS |
| CCATGGTGGAGTAATGCCTA+TGG | 0.514299 | 1_4:-43918936 | Msa0164430:CDS |
| AGCAGCTGGTAGACAGCTGC+TGG | 0.514662 | 1_4:-43917159 | Msa0164430:CDS |
| CCTAGCTCAAAACGGTTAAG+TGG | 0.514977 | 1_4:+43918485 | None:intergenic |
| AATTCGTCAAAGGAGACAAA+CGG | 0.518779 | 1_4:-43917338 | Msa0164430:CDS |
| TTCGGAACTCTGAGAACCAC+TGG | 0.518971 | 1_4:+43917388 | None:intergenic |
| TCTGCTAATGGAAACGGTAA+AGG | 0.520240 | 1_4:-43917455 | Msa0164430:CDS |
| CCGAGTAAGAACTTAGTTCG+AGG | 0.522823 | 1_4:-43918828 | Msa0164430:CDS |
| AACTTATGGACCTCAAATCT+CGG | 0.523805 | 1_4:-43918295 | Msa0164430:intron |
| TAAATACAAACCGAGATTTG+AGG | 0.527847 | 1_4:+43918285 | None:intergenic |
| CGGAGGCAGTCCAAACGTCT+CGG | 0.528352 | 1_4:-43917318 | Msa0164430:CDS |
| GGAAATGTCCACAATTCTGT+TGG | 0.536104 | 1_4:-43918984 | Msa0164430:CDS |
| GGTGACTAGCATGTATTCAC+AGG | 0.537442 | 1_4:-43917288 | Msa0164430:CDS |
| CCTCGAACTAAGTTCTTACT+CGG | 0.539423 | 1_4:+43918828 | None:intergenic |
| GGTTAAAACCTAGCTCAAAA+CGG | 0.541551 | 1_4:+43918477 | None:intergenic |
| GGCCTACAGCTGCAGTCCAG+TGG | 0.549836 | 1_4:-43917404 | Msa0164430:CDS |
| AACCTCAGATTGTAAGACTT+CGG | 0.557052 | 1_4:+43917370 | None:intergenic |
| TTCCGAAGTCTTACAATCTG+AGG | 0.557924 | 1_4:-43917372 | Msa0164430:CDS |
| AAATGATGATTGCAGTGATA+AGG | 0.560313 | 1_4:+43918517 | None:intergenic |
| TCCAAACGTCTCGGGGTCAG+AGG | 0.561807 | 1_4:-43917309 | Msa0164430:CDS |
| TCATCAGATGTCATGCTAAG+TGG | 0.562219 | 1_4:+43917771 | None:intergenic |
| AAAACTGTCCAACAGAATTG+TGG | 0.562402 | 1_4:+43918976 | None:intergenic |
| GTTTATCTTAAAGAACATGA+AGG | 0.564171 | 1_4:-43919005 | Msa0164430:CDS |
| ATAAACAGGTTGAGATCCAT+AGG | 0.573638 | 1_4:+43918920 | None:intergenic |
| GAAGTCTTACAATCTGAGGT+TGG | 0.582591 | 1_4:-43917368 | Msa0164430:CDS |
| GTTTATGGCGGAGAGTCTTG+TGG | 0.587983 | 1_4:-43918903 | Msa0164430:CDS |
| CTGTGACTTCAGCTCCATGG+TGG | 0.603679 | 1_4:-43918950 | Msa0164430:CDS |
| ATGCGTAGACCAAGAGGATG+CGG | 0.604666 | 1_4:-43917503 | Msa0164430:CDS |
| CGATCATGTCTCCCAAAGAG+TGG | 0.606030 | 1_4:+43917222 | None:intergenic |
| CTAATGGAAACGGTAAAGGC+GGG | 0.608350 | 1_4:-43917451 | Msa0164430:CDS |
| GAGGCAGTCCAAACGTCTCG+GGG | 0.630984 | 1_4:-43917316 | Msa0164430:CDS |
| GCTAATGGAAACGGTAAAGG+CGG | 0.633457 | 1_4:-43917452 | Msa0164430:CDS |
| TAAATTGATAAAGCGTAACA+AGG | 0.648504 | 1_4:-43917667 | Msa0164430:intron |
| CCATAGGCATTACTCCACCA+TGG | 0.653720 | 1_4:+43918936 | None:intergenic |
| GACATGATCGATACTGGACA+CGG | 0.660565 | 1_4:-43917209 | Msa0164430:CDS |
| CTTAGCATGACATCTGATGA+CGG | 0.665381 | 1_4:-43917768 | Msa0164430:CDS |
| CATGCAATGCGTAGACCAAG+AGG | 0.668981 | 1_4:-43917509 | Msa0164430:CDS |
| CGTAGACCAAGAGGATGCGG+TGG | 0.670871 | 1_4:-43917500 | Msa0164430:CDS |
| GTGAATGCTAAGCAATACCA+TGG | 0.675463 | 1_4:-43917735 | Msa0164430:CDS |
| GGATCTCAACCTGTTTATGG+CGG | 0.678188 | 1_4:-43918915 | Msa0164430:CDS |
| GTGACTAGCATGTATTCACA+GGG | 0.683616 | 1_4:-43917287 | Msa0164430:CDS |
| GTCTGCGTCTGATGATACCA+TGG | 0.685059 | 1_4:+43917718 | None:intergenic |
| AACCACTGGACTGCAGCTGT+AGG | 0.688049 | 1_4:+43917402 | None:intergenic |
| AGTGAAGAGAACATAAACAC+TGG | 0.692663 | 1_4:-43917428 | Msa0164430:CDS |
| GAAGAGAACATAAACACTGG+TGG | 0.703232 | 1_4:-43917425 | Msa0164430:CDS |
| ACTAGCATGTATTCACAGGG+AGG | 0.747620 | 1_4:-43917284 | Msa0164430:CDS |
| TCGTCAAAGGAGACAAACGG+AGG | 0.770276 | 1_4:-43917335 | Msa0164430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAATTATGGTTA+AGG | - | chr1_4:43918141-43918160 | Msa0164430:intron | 10.0% |
| !! | GTATCTATATTTAATAAATT+AGG | - | chr1_4:43918363-43918382 | Msa0164430:intron | 10.0% |
| !! | TAAAAAAAAAATTATGGTTA+AGG | - | chr1_4:43918141-43918160 | Msa0164430:intron | 10.0% |
| !! | GTATCTATATTTAATAAATT+AGG | - | chr1_4:43918363-43918382 | Msa0164430:intron | 10.0% |
| !!! | CATCATATAATTCAATTTTA+AGG | + | chr1_4:43918247-43918266 | None:intergenic | 15.0% |
| !!! | CATCATATAATTCAATTTTA+AGG | + | chr1_4:43918247-43918266 | None:intergenic | 15.0% |
| !!! | CTTGTTATTCAATATAATTC+TGG | - | chr1_4:43917422-43917441 | Msa0164430:CDS | 20.0% |
| !!! | TGAATTGATTTTTGTTAAGT+TGG | - | chr1_4:43917452-43917471 | Msa0164430:CDS | 20.0% |
| !! | TTATGTAACATGATTTATGT+CGG | - | chr1_4:43917498-43917517 | Msa0164430:CDS | 20.0% |
| !! | AATACTAAAACATGATCAAA+GGG | + | chr1_4:43917748-43917767 | None:intergenic | 20.0% |
| !! | AAATACTAAAACATGATCAA+AGG | + | chr1_4:43917749-43917768 | None:intergenic | 20.0% |
| !! | TTATGTACTAAAACATTGAT+TGG | + | chr1_4:43917775-43917794 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTTAATGAGTTTT+AGG | - | chr1_4:43918085-43918104 | Msa0164430:intron | 20.0% |
| !! | CCTTAATACATGTATAAAAA+GGG | + | chr1_4:43918596-43918615 | None:intergenic | 20.0% |
| !! | ACCTTAATACATGTATAAAA+AGG | + | chr1_4:43918597-43918616 | None:intergenic | 20.0% |
| !!! | CTTGTTATTCAATATAATTC+TGG | - | chr1_4:43917422-43917441 | Msa0164430:CDS | 20.0% |
| !!! | TGAATTGATTTTTGTTAAGT+TGG | - | chr1_4:43917452-43917471 | Msa0164430:CDS | 20.0% |
| !! | TTATGTAACATGATTTATGT+CGG | - | chr1_4:43917498-43917517 | Msa0164430:CDS | 20.0% |
| !! | AATACTAAAACATGATCAAA+GGG | + | chr1_4:43917748-43917767 | None:intergenic | 20.0% |
| !! | AAATACTAAAACATGATCAA+AGG | + | chr1_4:43917749-43917768 | None:intergenic | 20.0% |
| !! | TTATGTACTAAAACATTGAT+TGG | + | chr1_4:43917775-43917794 | None:intergenic | 20.0% |
| !!! | ATTTGTTGTTAATGAGTTTT+AGG | - | chr1_4:43918085-43918104 | Msa0164430:intron | 20.0% |
| !! | CCTTAATACATGTATAAAAA+GGG | + | chr1_4:43918596-43918615 | None:intergenic | 20.0% |
| !! | ACCTTAATACATGTATAAAA+AGG | + | chr1_4:43918597-43918616 | None:intergenic | 20.0% |
| !!! | TCATGTTCTTTAAGATAAAC+AGG | + | chr1_4:43917166-43917185 | None:intergenic | 25.0% |
| ! | GTTTATCTTAAAGAACATGA+AGG | - | chr1_4:43917166-43917185 | Msa0164430:CDS | 25.0% |
| ! | GTTGAACAATTGTTTGATAA+AGG | - | chr1_4:43917367-43917386 | Msa0164430:CDS | 25.0% |
| ! | TATATTGAATAACAAGTACC+TGG | + | chr1_4:43917418-43917437 | None:intergenic | 25.0% |
| ! | TGTAGAAGAAAATGTTTGAA+TGG | + | chr1_4:43917591-43917610 | None:intergenic | 25.0% |
| !!! | GTTTTGTTAAGATTTACCAT+AGG | + | chr1_4:43917722-43917741 | None:intergenic | 25.0% |
| !! | CCTTATATGGATCAATTTTA+CGG | - | chr1_4:43917844-43917863 | Msa0164430:intron | 25.0% |
| !! | CTTATATGGATCAATTTTAC+GGG | - | chr1_4:43917845-43917864 | Msa0164430:intron | 25.0% |
| ! | TAAATTGATAAAGCGTAACA+AGG | - | chr1_4:43918504-43918523 | Msa0164430:CDS | 25.0% |
| !! | CCCTTTTTATACATGTATTA+AGG | - | chr1_4:43918593-43918612 | Msa0164430:intron | 25.0% |
| !!! | TCATGTTCTTTAAGATAAAC+AGG | + | chr1_4:43917166-43917185 | None:intergenic | 25.0% |
| ! | GTTTATCTTAAAGAACATGA+AGG | - | chr1_4:43917166-43917185 | Msa0164430:CDS | 25.0% |
| ! | GTTGAACAATTGTTTGATAA+AGG | - | chr1_4:43917367-43917386 | Msa0164430:CDS | 25.0% |
| ! | TATATTGAATAACAAGTACC+TGG | + | chr1_4:43917418-43917437 | None:intergenic | 25.0% |
| ! | TGTAGAAGAAAATGTTTGAA+TGG | + | chr1_4:43917591-43917610 | None:intergenic | 25.0% |
| !!! | GTTTTGTTAAGATTTACCAT+AGG | + | chr1_4:43917722-43917741 | None:intergenic | 25.0% |
| !! | CCTTATATGGATCAATTTTA+CGG | - | chr1_4:43917844-43917863 | Msa0164430:intron | 25.0% |
| !! | CTTATATGGATCAATTTTAC+GGG | - | chr1_4:43917845-43917864 | Msa0164430:intron | 25.0% |
| ! | TAAATTGATAAAGCGTAACA+AGG | - | chr1_4:43918504-43918523 | Msa0164430:CDS | 25.0% |
| !! | CCCTTTTTATACATGTATTA+AGG | - | chr1_4:43918593-43918612 | Msa0164430:intron | 25.0% |
| CTAGTGAAAAAGGTTTCATT+TGG | + | chr1_4:43917294-43917313 | None:intergenic | 30.0% | |
| ATAACAAGTACCTGGAAAAA+TGG | + | chr1_4:43917410-43917429 | None:intergenic | 30.0% | |
| !!! | GATTTTTGTTAAGTTGGTTC+TGG | - | chr1_4:43917458-43917477 | Msa0164430:CDS | 30.0% |
| AAATGATGATTGCAGTGATA+AGG | + | chr1_4:43917657-43917676 | None:intergenic | 30.0% | |
| CTGTGCAAAATATCCTTATA+TGG | - | chr1_4:43917831-43917850 | Msa0164430:intron | 30.0% | |
| CCGTAAAATTGATCCATATA+AGG | + | chr1_4:43917847-43917866 | None:intergenic | 30.0% | |
| TAAATACAAACCGAGATTTG+AGG | + | chr1_4:43917889-43917908 | None:intergenic | 30.0% | |
| GATAGTTGTAAACAGATTTC+TGG | + | chr1_4:43918016-43918035 | None:intergenic | 30.0% | |
| AACACAGATGAGAAGAAAAT+TGG | - | chr1_4:43918203-43918222 | Msa0164430:intron | 30.0% | |
| ! | TGAAGTTTTTGCATGTATTC+AGG | - | chr1_4:43918277-43918296 | Msa0164430:intron | 30.0% |
| ! | AGTTTTCAAACATTGTTGTG+AGG | + | chr1_4:43918549-43918568 | None:intergenic | 30.0% |
| AACACAAAAGTTTCTGCTAA+TGG | - | chr1_4:43918704-43918723 | Msa0164430:intron | 30.0% | |
| AAAGTTTCTGCTAATGGAAA+CGG | - | chr1_4:43918710-43918729 | Msa0164430:intron | 30.0% | |
| TGGAACTTTAAATTCGTCAA+AGG | - | chr1_4:43918823-43918842 | Msa0164430:CDS | 30.0% | |
| AGCTTTACTGTCAATCATAT+CGG | - | chr1_4:43918917-43918936 | Msa0164430:CDS | 30.0% | |
| CTAGTGAAAAAGGTTTCATT+TGG | + | chr1_4:43917294-43917313 | None:intergenic | 30.0% | |
| ATAACAAGTACCTGGAAAAA+TGG | + | chr1_4:43917410-43917429 | None:intergenic | 30.0% | |
| !!! | GATTTTTGTTAAGTTGGTTC+TGG | - | chr1_4:43917458-43917477 | Msa0164430:CDS | 30.0% |
| AAATGATGATTGCAGTGATA+AGG | + | chr1_4:43917657-43917676 | None:intergenic | 30.0% | |
| CTGTGCAAAATATCCTTATA+TGG | - | chr1_4:43917831-43917850 | Msa0164430:intron | 30.0% | |
| CCGTAAAATTGATCCATATA+AGG | + | chr1_4:43917847-43917866 | None:intergenic | 30.0% | |
| TAAATACAAACCGAGATTTG+AGG | + | chr1_4:43917889-43917908 | None:intergenic | 30.0% | |
| GATAGTTGTAAACAGATTTC+TGG | + | chr1_4:43918016-43918035 | None:intergenic | 30.0% | |
| AACACAGATGAGAAGAAAAT+TGG | - | chr1_4:43918203-43918222 | Msa0164430:intron | 30.0% | |
| ! | TGAAGTTTTTGCATGTATTC+AGG | - | chr1_4:43918277-43918296 | Msa0164430:intron | 30.0% |
| ! | AGTTTTCAAACATTGTTGTG+AGG | + | chr1_4:43918549-43918568 | None:intergenic | 30.0% |
| AACACAAAAGTTTCTGCTAA+TGG | - | chr1_4:43918704-43918723 | Msa0164430:intron | 30.0% | |
| AAAGTTTCTGCTAATGGAAA+CGG | - | chr1_4:43918710-43918729 | Msa0164430:intron | 30.0% | |
| TGGAACTTTAAATTCGTCAA+AGG | - | chr1_4:43918823-43918842 | Msa0164430:CDS | 30.0% | |
| AGCTTTACTGTCAATCATAT+CGG | - | chr1_4:43918917-43918936 | Msa0164430:CDS | 30.0% | |
| AAAACTGTCCAACAGAATTG+TGG | + | chr1_4:43917198-43917217 | None:intergenic | 35.0% | |
| ! | ATAAACAGGTTGAGATCCAT+AGG | + | chr1_4:43917254-43917273 | None:intergenic | 35.0% |
| TATGGATCTCAACCTGTTTA+TGG | - | chr1_4:43917253-43917272 | Msa0164430:CDS | 35.0% | |
| ! | TTGGAAAGCTCTAGTGAAAA+AGG | + | chr1_4:43917304-43917323 | None:intergenic | 35.0% |
| AGCAATTTGGTCTATGTAGT+TGG | + | chr1_4:43917323-43917342 | None:intergenic | 35.0% | |
| !! | AACCAATTCACCATTTTTCC+AGG | - | chr1_4:43917397-43917416 | Msa0164430:CDS | 35.0% |
| TACCTGGAAAAATGGTGAAT+TGG | + | chr1_4:43917402-43917421 | None:intergenic | 35.0% | |
| AAGAAAATGTTTGAATGGCC+AGG | + | chr1_4:43917586-43917605 | None:intergenic | 35.0% | |
| ! | GATAAGGTTGCTTGATGATT+CGG | + | chr1_4:43917641-43917660 | None:intergenic | 35.0% |
| GGTTAAAACCTAGCTCAAAA+CGG | + | chr1_4:43917697-43917716 | None:intergenic | 35.0% | |
| TGTTAAGATTTACCATAGGC+TGG | + | chr1_4:43917718-43917737 | None:intergenic | 35.0% | |
| ! | TATTTTGCACAGATCTAGCA+TGG | + | chr1_4:43917823-43917842 | None:intergenic | 35.0% |
| AACTTATGGACCTCAAATCT+CGG | - | chr1_4:43917876-43917895 | Msa0164430:intron | 35.0% | |
| ! | ATCTCGGTTTGTATTTACCT+CGG | - | chr1_4:43917892-43917911 | Msa0164430:intron | 35.0% |
| AATGATTAAGAAAAGAGCCG+AGG | + | chr1_4:43917912-43917931 | None:intergenic | 35.0% | |
| ATCTGCAGCAGATAAACAAA+TGG | + | chr1_4:43918318-43918337 | None:intergenic | 35.0% | |
| !! | TTTATTCTGAAGCACAGCTT+TGG | + | chr1_4:43918488-43918507 | None:intergenic | 35.0% |
| AGTGAAGAGAACATAAACAC+TGG | - | chr1_4:43918743-43918762 | Msa0164430:intron | 35.0% | |
| AACCTCAGATTGTAAGACTT+CGG | + | chr1_4:43918804-43918823 | None:intergenic | 35.0% | |
| AATTCGTCAAAGGAGACAAA+CGG | - | chr1_4:43918833-43918852 | Msa0164430:CDS | 35.0% | |
| GTATTGTCATGCCAACAAAA+TGG | - | chr1_4:43918984-43919003 | Msa0164430:CDS | 35.0% | |
| AAAACTGTCCAACAGAATTG+TGG | + | chr1_4:43917198-43917217 | None:intergenic | 35.0% | |
| ! | ATAAACAGGTTGAGATCCAT+AGG | + | chr1_4:43917254-43917273 | None:intergenic | 35.0% |
| TATGGATCTCAACCTGTTTA+TGG | - | chr1_4:43917253-43917272 | Msa0164430:CDS | 35.0% | |
| ! | TTGGAAAGCTCTAGTGAAAA+AGG | + | chr1_4:43917304-43917323 | None:intergenic | 35.0% |
| AGCAATTTGGTCTATGTAGT+TGG | + | chr1_4:43917323-43917342 | None:intergenic | 35.0% | |
| !! | AACCAATTCACCATTTTTCC+AGG | - | chr1_4:43917397-43917416 | Msa0164430:CDS | 35.0% |
| TACCTGGAAAAATGGTGAAT+TGG | + | chr1_4:43917402-43917421 | None:intergenic | 35.0% | |
| AAGAAAATGTTTGAATGGCC+AGG | + | chr1_4:43917586-43917605 | None:intergenic | 35.0% | |
| ! | GATAAGGTTGCTTGATGATT+CGG | + | chr1_4:43917641-43917660 | None:intergenic | 35.0% |
| GGTTAAAACCTAGCTCAAAA+CGG | + | chr1_4:43917697-43917716 | None:intergenic | 35.0% | |
| TGTTAAGATTTACCATAGGC+TGG | + | chr1_4:43917718-43917737 | None:intergenic | 35.0% | |
| ! | TATTTTGCACAGATCTAGCA+TGG | + | chr1_4:43917823-43917842 | None:intergenic | 35.0% |
| AACTTATGGACCTCAAATCT+CGG | - | chr1_4:43917876-43917895 | Msa0164430:intron | 35.0% | |
| ! | ATCTCGGTTTGTATTTACCT+CGG | - | chr1_4:43917892-43917911 | Msa0164430:intron | 35.0% |
| AATGATTAAGAAAAGAGCCG+AGG | + | chr1_4:43917912-43917931 | None:intergenic | 35.0% | |
| ATCTGCAGCAGATAAACAAA+TGG | + | chr1_4:43918318-43918337 | None:intergenic | 35.0% | |
| !! | TTTATTCTGAAGCACAGCTT+TGG | + | chr1_4:43918488-43918507 | None:intergenic | 35.0% |
| AGTGAAGAGAACATAAACAC+TGG | - | chr1_4:43918743-43918762 | Msa0164430:intron | 35.0% | |
| AACCTCAGATTGTAAGACTT+CGG | + | chr1_4:43918804-43918823 | None:intergenic | 35.0% | |
| AATTCGTCAAAGGAGACAAA+CGG | - | chr1_4:43918833-43918852 | Msa0164430:CDS | 35.0% | |
| GTATTGTCATGCCAACAAAA+TGG | - | chr1_4:43918984-43919003 | Msa0164430:CDS | 35.0% | |
| GGAAATGTCCACAATTCTGT+TGG | - | chr1_4:43917187-43917206 | Msa0164430:CDS | 40.0% | |
| AGTTCTTACTCGGAGCAATT+TGG | + | chr1_4:43917336-43917355 | None:intergenic | 40.0% | |
| CCTCGAACTAAGTTCTTACT+CGG | + | chr1_4:43917346-43917365 | None:intergenic | 40.0% | |
| !! | AAGTTGGTTCTGGCTAAACA+TGG | - | chr1_4:43917468-43917487 | Msa0164430:CDS | 40.0% |
| ! | CTTTTGAACTTTCCTATGCC+TGG | - | chr1_4:43917565-43917584 | Msa0164430:intron | 40.0% |
| TCATCAGATGTCATGCTAAG+TGG | + | chr1_4:43918403-43918422 | None:intergenic | 40.0% | |
| CTTAGCATGACATCTGATGA+CGG | - | chr1_4:43918403-43918422 | Msa0164430:intron | 40.0% | |
| TGCTTAGCATTCACGTATGT+TGG | + | chr1_4:43918430-43918449 | None:intergenic | 40.0% | |
| GTGAATGCTAAGCAATACCA+TGG | - | chr1_4:43918436-43918455 | Msa0164430:intron | 40.0% | |
| TCTGCTAATGGAAACGGTAA+AGG | - | chr1_4:43918716-43918735 | Msa0164430:intron | 40.0% | |
| GAAGAGAACATAAACACTGG+TGG | - | chr1_4:43918746-43918765 | Msa0164430:intron | 40.0% | |
| TTCCGAAGTCTTACAATCTG+AGG | - | chr1_4:43918799-43918818 | Msa0164430:CDS | 40.0% | |
| ! | GAAGTCTTACAATCTGAGGT+TGG | - | chr1_4:43918803-43918822 | Msa0164430:CDS | 40.0% |
| GTGACTAGCATGTATTCACA+GGG | - | chr1_4:43918884-43918903 | Msa0164430:CDS | 40.0% | |
| GGAAATGTCCACAATTCTGT+TGG | - | chr1_4:43917187-43917206 | Msa0164430:CDS | 40.0% | |
| AGTTCTTACTCGGAGCAATT+TGG | + | chr1_4:43917336-43917355 | None:intergenic | 40.0% | |
| CCTCGAACTAAGTTCTTACT+CGG | + | chr1_4:43917346-43917365 | None:intergenic | 40.0% | |
| !! | AAGTTGGTTCTGGCTAAACA+TGG | - | chr1_4:43917468-43917487 | Msa0164430:CDS | 40.0% |
| ! | CTTTTGAACTTTCCTATGCC+TGG | - | chr1_4:43917565-43917584 | Msa0164430:intron | 40.0% |
| TCATCAGATGTCATGCTAAG+TGG | + | chr1_4:43918403-43918422 | None:intergenic | 40.0% | |
| CTTAGCATGACATCTGATGA+CGG | - | chr1_4:43918403-43918422 | Msa0164430:intron | 40.0% | |
| TGCTTAGCATTCACGTATGT+TGG | + | chr1_4:43918430-43918449 | None:intergenic | 40.0% | |
| GTGAATGCTAAGCAATACCA+TGG | - | chr1_4:43918436-43918455 | Msa0164430:intron | 40.0% | |
| TCTGCTAATGGAAACGGTAA+AGG | - | chr1_4:43918716-43918735 | Msa0164430:intron | 40.0% | |
| GAAGAGAACATAAACACTGG+TGG | - | chr1_4:43918746-43918765 | Msa0164430:intron | 40.0% | |
| TTCCGAAGTCTTACAATCTG+AGG | - | chr1_4:43918799-43918818 | Msa0164430:CDS | 40.0% | |
| ! | GAAGTCTTACAATCTGAGGT+TGG | - | chr1_4:43918803-43918822 | Msa0164430:CDS | 40.0% |
| GTGACTAGCATGTATTCACA+GGG | - | chr1_4:43918884-43918903 | Msa0164430:CDS | 40.0% | |
| GGATCTCAACCTGTTTATGG+CGG | - | chr1_4:43917256-43917275 | Msa0164430:CDS | 45.0% | |
| CCGAGTAAGAACTTAGTTCG+AGG | - | chr1_4:43917343-43917362 | Msa0164430:CDS | 45.0% | |
| ATGTTTGAATGGCCAGGCAT+AGG | + | chr1_4:43917580-43917599 | None:intergenic | 45.0% | |
| CCTAGCTCAAAACGGTTAAG+TGG | + | chr1_4:43917689-43917708 | None:intergenic | 45.0% | |
| !! | CCACTTAACCGTTTTGAGCT+AGG | - | chr1_4:43917686-43917705 | Msa0164430:CDS | 45.0% |
| !! | GCTAGGTTTTAACCAGCCTA+TGG | - | chr1_4:43917703-43917722 | Msa0164430:CDS | 45.0% |
| TGCACAGATCTAGCATGGAA+AGG | + | chr1_4:43917818-43917837 | None:intergenic | 45.0% | |
| TACGGGCTCTTCTCAACTTA+TGG | - | chr1_4:43917862-43917881 | Msa0164430:intron | 45.0% | |
| TGACGCGATTCGTGCATATA+TGG | + | chr1_4:43918638-43918657 | None:intergenic | 45.0% | |
| GCTAATGGAAACGGTAAAGG+CGG | - | chr1_4:43918719-43918738 | Msa0164430:intron | 45.0% | |
| CTAATGGAAACGGTAAAGGC+GGG | - | chr1_4:43918720-43918739 | Msa0164430:intron | 45.0% | |
| GGTGACTAGCATGTATTCAC+AGG | - | chr1_4:43918883-43918902 | Msa0164430:CDS | 45.0% | |
| ACTAGCATGTATTCACAGGG+AGG | - | chr1_4:43918887-43918906 | Msa0164430:CDS | 45.0% | |
| GGATCTACTGTCCACTCTTT+GGG | - | chr1_4:43918938-43918957 | Msa0164430:CDS | 45.0% | |
| TTGGGAGACATGATCGATAC+TGG | - | chr1_4:43918956-43918975 | Msa0164430:CDS | 45.0% | |
| GACATGATCGATACTGGACA+CGG | - | chr1_4:43918962-43918981 | Msa0164430:CDS | 45.0% | |
| ! | GCTGCTGCAAACCATTTTGT+TGG | + | chr1_4:43918998-43919017 | None:intergenic | 45.0% |
| ! | ACAAAATGGTTTGCAGCAGC+TGG | - | chr1_4:43918998-43919017 | Msa0164430:CDS | 45.0% |
| GGATCTCAACCTGTTTATGG+CGG | - | chr1_4:43917256-43917275 | Msa0164430:CDS | 45.0% | |
| CCGAGTAAGAACTTAGTTCG+AGG | - | chr1_4:43917343-43917362 | Msa0164430:CDS | 45.0% | |
| ATGTTTGAATGGCCAGGCAT+AGG | + | chr1_4:43917580-43917599 | None:intergenic | 45.0% | |
| CCTAGCTCAAAACGGTTAAG+TGG | + | chr1_4:43917689-43917708 | None:intergenic | 45.0% | |
| !! | CCACTTAACCGTTTTGAGCT+AGG | - | chr1_4:43917686-43917705 | Msa0164430:CDS | 45.0% |
| !! | GCTAGGTTTTAACCAGCCTA+TGG | - | chr1_4:43917703-43917722 | Msa0164430:CDS | 45.0% |
| TGCACAGATCTAGCATGGAA+AGG | + | chr1_4:43917818-43917837 | None:intergenic | 45.0% | |
| TACGGGCTCTTCTCAACTTA+TGG | - | chr1_4:43917862-43917881 | Msa0164430:intron | 45.0% | |
| TGACGCGATTCGTGCATATA+TGG | + | chr1_4:43918638-43918657 | None:intergenic | 45.0% | |
| GCTAATGGAAACGGTAAAGG+CGG | - | chr1_4:43918719-43918738 | Msa0164430:intron | 45.0% | |
| CTAATGGAAACGGTAAAGGC+GGG | - | chr1_4:43918720-43918739 | Msa0164430:intron | 45.0% | |
| GGTGACTAGCATGTATTCAC+AGG | - | chr1_4:43918883-43918902 | Msa0164430:CDS | 45.0% | |
| ACTAGCATGTATTCACAGGG+AGG | - | chr1_4:43918887-43918906 | Msa0164430:CDS | 45.0% | |
| GGATCTACTGTCCACTCTTT+GGG | - | chr1_4:43918938-43918957 | Msa0164430:CDS | 45.0% | |
| TTGGGAGACATGATCGATAC+TGG | - | chr1_4:43918956-43918975 | Msa0164430:CDS | 45.0% | |
| GACATGATCGATACTGGACA+CGG | - | chr1_4:43918962-43918981 | Msa0164430:CDS | 45.0% | |
| ! | GCTGCTGCAAACCATTTTGT+TGG | + | chr1_4:43918998-43919017 | None:intergenic | 45.0% |
| ! | ACAAAATGGTTTGCAGCAGC+TGG | - | chr1_4:43918998-43919017 | Msa0164430:CDS | 45.0% |
| !! | ATGAAATAAAAAAAAAATTA+TGG | - | chr1_4:43918135-43918154 | Msa0164430:intron | 5.0% |
| !! | TATCTATATTTAATAAATTA+GGG | - | chr1_4:43918364-43918383 | Msa0164430:intron | 5.0% |
| !! | ATGAAATAAAAAAAAAATTA+TGG | - | chr1_4:43918135-43918154 | Msa0164430:intron | 5.0% |
| !! | TATCTATATTTAATAAATTA+GGG | - | chr1_4:43918364-43918383 | Msa0164430:intron | 5.0% |
| CATCTGTGACTTCAGCTCCA+TGG | - | chr1_4:43917218-43917237 | Msa0164430:CDS | 50.0% | |
| CCATAGGCATTACTCCACCA+TGG | + | chr1_4:43917238-43917257 | None:intergenic | 50.0% | |
| ! | CCATGGTGGAGTAATGCCTA+TGG | - | chr1_4:43917235-43917254 | Msa0164430:CDS | 50.0% |
| CAAGACTCTCCGCCATAAAC+AGG | + | chr1_4:43917268-43917287 | None:intergenic | 50.0% | |
| ! | GTTTATGGCGGAGAGTCTTG+TGG | - | chr1_4:43917268-43917287 | Msa0164430:CDS | 50.0% |
| GTCTGCGTCTGATGATACCA+TGG | + | chr1_4:43918456-43918475 | None:intergenic | 50.0% | |
| CATGCAATGCGTAGACCAAG+AGG | - | chr1_4:43918662-43918681 | Msa0164430:intron | 50.0% | |
| ATGCGTAGACCAAGAGGATG+CGG | - | chr1_4:43918668-43918687 | Msa0164430:intron | 50.0% | |
| ! | TTCGGAACTCTGAGAACCAC+TGG | + | chr1_4:43918786-43918805 | None:intergenic | 50.0% |
| TCGTCAAAGGAGACAAACGG+AGG | - | chr1_4:43918836-43918855 | Msa0164430:CDS | 50.0% | |
| CGGATCTACTGTCCACTCTT+TGG | - | chr1_4:43918937-43918956 | Msa0164430:CDS | 50.0% | |
| CGATCATGTCTCCCAAAGAG+TGG | + | chr1_4:43918952-43918971 | None:intergenic | 50.0% | |
| CATCTGTGACTTCAGCTCCA+TGG | - | chr1_4:43917218-43917237 | Msa0164430:CDS | 50.0% | |
| CCATAGGCATTACTCCACCA+TGG | + | chr1_4:43917238-43917257 | None:intergenic | 50.0% | |
| ! | CCATGGTGGAGTAATGCCTA+TGG | - | chr1_4:43917235-43917254 | Msa0164430:CDS | 50.0% |
| CAAGACTCTCCGCCATAAAC+AGG | + | chr1_4:43917268-43917287 | None:intergenic | 50.0% | |
| ! | GTTTATGGCGGAGAGTCTTG+TGG | - | chr1_4:43917268-43917287 | Msa0164430:CDS | 50.0% |
| GTCTGCGTCTGATGATACCA+TGG | + | chr1_4:43918456-43918475 | None:intergenic | 50.0% | |
| CATGCAATGCGTAGACCAAG+AGG | - | chr1_4:43918662-43918681 | Msa0164430:intron | 50.0% | |
| ATGCGTAGACCAAGAGGATG+CGG | - | chr1_4:43918668-43918687 | Msa0164430:intron | 50.0% | |
| ! | TTCGGAACTCTGAGAACCAC+TGG | + | chr1_4:43918786-43918805 | None:intergenic | 50.0% |
| TCGTCAAAGGAGACAAACGG+AGG | - | chr1_4:43918836-43918855 | Msa0164430:CDS | 50.0% | |
| CGGATCTACTGTCCACTCTT+TGG | - | chr1_4:43918937-43918956 | Msa0164430:CDS | 50.0% | |
| CGATCATGTCTCCCAAAGAG+TGG | + | chr1_4:43918952-43918971 | None:intergenic | 50.0% | |
| CTGTGACTTCAGCTCCATGG+TGG | - | chr1_4:43917221-43917240 | Msa0164430:CDS | 55.0% | |
| AAACGACCACCGCATCCTCT+TGG | + | chr1_4:43918680-43918699 | None:intergenic | 55.0% | |
| AACCACTGGACTGCAGCTGT+AGG | + | chr1_4:43918772-43918791 | None:intergenic | 55.0% | |
| CTGTGACTTCAGCTCCATGG+TGG | - | chr1_4:43917221-43917240 | Msa0164430:CDS | 55.0% | |
| AAACGACCACCGCATCCTCT+TGG | + | chr1_4:43918680-43918699 | None:intergenic | 55.0% | |
| AACCACTGGACTGCAGCTGT+AGG | + | chr1_4:43918772-43918791 | None:intergenic | 55.0% | |
| CGTAGACCAAGAGGATGCGG+TGG | - | chr1_4:43918671-43918690 | Msa0164430:intron | 60.0% | |
| CGGAGGCAGTCCAAACGTCT+CGG | - | chr1_4:43918853-43918872 | Msa0164430:CDS | 60.0% | |
| GGAGGCAGTCCAAACGTCTC+GGG | - | chr1_4:43918854-43918873 | Msa0164430:CDS | 60.0% | |
| GAGGCAGTCCAAACGTCTCG+GGG | - | chr1_4:43918855-43918874 | Msa0164430:CDS | 60.0% | |
| TCCAAACGTCTCGGGGTCAG+AGG | - | chr1_4:43918862-43918881 | Msa0164430:CDS | 60.0% | |
| ACCTCTGACCCCGAGACGTT+TGG | + | chr1_4:43918866-43918885 | None:intergenic | 60.0% | |
| AGCAGCTGGTAGACAGCTGC+TGG | - | chr1_4:43919012-43919031 | Msa0164430:CDS | 60.0% | |
| CGTAGACCAAGAGGATGCGG+TGG | - | chr1_4:43918671-43918690 | Msa0164430:intron | 60.0% | |
| CGGAGGCAGTCCAAACGTCT+CGG | - | chr1_4:43918853-43918872 | Msa0164430:CDS | 60.0% | |
| GGAGGCAGTCCAAACGTCTC+GGG | - | chr1_4:43918854-43918873 | Msa0164430:CDS | 60.0% | |
| GAGGCAGTCCAAACGTCTCG+GGG | - | chr1_4:43918855-43918874 | Msa0164430:CDS | 60.0% | |
| TCCAAACGTCTCGGGGTCAG+AGG | - | chr1_4:43918862-43918881 | Msa0164430:CDS | 60.0% | |
| ACCTCTGACCCCGAGACGTT+TGG | + | chr1_4:43918866-43918885 | None:intergenic | 60.0% | |
| AGCAGCTGGTAGACAGCTGC+TGG | - | chr1_4:43919012-43919031 | Msa0164430:CDS | 60.0% | |
| GGCCTACAGCTGCAGTCCAG+TGG | - | chr1_4:43918767-43918786 | Msa0164430:intron | 65.0% | |
| GGCCTACAGCTGCAGTCCAG+TGG | - | chr1_4:43918767-43918786 | Msa0164430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43917151 | 43919042 | 43917151 | ID=Msa0164430;Name=Msa0164430 |
| chr1_4 | mRNA | 43917151 | 43919042 | 43917151 | ID=Msa0164430-mRNA-1;Parent=Msa0164430;Name=Msa0164430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|5|0|332 |
| chr1_4 | exon | 43918775 | 43919042 | 43918775 | ID=Msa0164430-mRNA-1:exon:12556;Parent=Msa0164430-mRNA-1 |
| chr1_4 | exon | 43918469 | 43918581 | 43918469 | ID=Msa0164430-mRNA-1:exon:12555;Parent=Msa0164430-mRNA-1 |
| chr1_4 | exon | 43918296 | 43918364 | 43918296 | ID=Msa0164430-mRNA-1:exon:12554;Parent=Msa0164430-mRNA-1 |
| chr1_4 | exon | 43917668 | 43917808 | 43917668 | ID=Msa0164430-mRNA-1:exon:12553;Parent=Msa0164430-mRNA-1 |
| chr1_4 | exon | 43917151 | 43917558 | 43917151 | ID=Msa0164430-mRNA-1:exon:12552;Parent=Msa0164430-mRNA-1 |
| chr1_4 | CDS | 43918775 | 43919042 | 43918775 | ID=Msa0164430-mRNA-1:cds;Parent=Msa0164430-mRNA-1 |
| chr1_4 | CDS | 43918469 | 43918581 | 43918469 | ID=Msa0164430-mRNA-1:cds;Parent=Msa0164430-mRNA-1 |
| chr1_4 | CDS | 43918296 | 43918364 | 43918296 | ID=Msa0164430-mRNA-1:cds;Parent=Msa0164430-mRNA-1 |
| chr1_4 | CDS | 43917668 | 43917808 | 43917668 | ID=Msa0164430-mRNA-1:cds;Parent=Msa0164430-mRNA-1 |
| chr1_4 | CDS | 43917151 | 43917558 | 43917151 | ID=Msa0164430-mRNA-1:cds;Parent=Msa0164430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
