Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165280 | XP_024635334.1 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.50e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165280 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165280 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0165240 | Msa0165280 | 0.869464 | 3.037513e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165280 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa0165280 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa0165280 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa0165280 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa0165280 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa0165280 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165280 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa0165280 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa0165280 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa0165280 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa0165280 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa0165280 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa0165280 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa0165280 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1_4:-45718051 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1_4:-45718070 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | 1_4:+45716317 | Msa0165280:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1_4:-45720105 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1_4:+45717496 | Msa0165280:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1_4:-45717297 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1_4:+45717283 | Msa0165280:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1_4:+45719552 | Msa0165280:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1_4:+45717260 | Msa0165280:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1_4:+45720112 | Msa0165280:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | 1_4:+45716266 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1_4:+45716552 | Msa0165280:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1_4:+45718070 | Msa0165280:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1_4:+45717475 | Msa0165280:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1_4:-45716575 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1_4:+45717464 | Msa0165280:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1_4:+45719532 | Msa0165280:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1_4:+45716378 | Msa0165280:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1_4:+45718246 | Msa0165280:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1_4:+45717254 | Msa0165280:CDS |
| GCTCAGTCTTCTATTTCTGC+CGG | 0.508543 | 1_4:+45717455 | Msa0165280:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1_4:+45719681 | Msa0165280:intron |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1_4:-45716581 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1_4:+45718201 | Msa0165280:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1_4:+45717249 | Msa0165280:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1_4:+45720115 | Msa0165280:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1_4:+45719718 | Msa0165280:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1_4:+45717242 | Msa0165280:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1_4:+45717481 | Msa0165280:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1_4:-45717474 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1_4:-45717260 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1_4:+45717304 | Msa0165280:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1_4:-45718206 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1_4:+45716568 | Msa0165280:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1_4:+45718213 | Msa0165280:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1_4:+45717324 | Msa0165280:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1_4:+45719537 | Msa0165280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATTTACATTTTTTTTT+TGG | + | chr1_4:45716633-45716652 | Msa0165280:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | - | chr1_4:45716680-45716699 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | - | chr1_4:45716681-45716700 | None:intergenic | 15.0% |
| !! | CACATAAAAAAAAAAAAACT+AGG | - | chr1_4:45716917-45716936 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1_4:45717703-45717722 | Msa0165280:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1_4:45718491-45718510 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1_4:45719111-45719130 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1_4:45719356-45719375 | Msa0165280:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1_4:45719492-45719511 | Msa0165280:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1_4:45719512-45719531 | Msa0165280:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1_4:45716813-45716832 | Msa0165280:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1_4:45717761-45717780 | Msa0165280:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1_4:45717853-45717872 | Msa0165280:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1_4:45718383-45718402 | Msa0165280:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1_4:45718589-45718608 | Msa0165280:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1_4:45718722-45718741 | Msa0165280:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1_4:45719127-45719146 | Msa0165280:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1_4:45719128-45719147 | Msa0165280:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1_4:45719284-45719303 | None:intergenic | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1_4:45719327-45719346 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1_4:45719516-45719535 | Msa0165280:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1_4:45719789-45719808 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1_4:45716474-45716493 | None:intergenic | 25.0% |
| ! | ATTAATTAGATGTATTCCAC+AGG | + | chr1_4:45716691-45716710 | Msa0165280:intron | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | - | chr1_4:45716802-45716821 | None:intergenic | 25.0% |
| ! | TAAGTTATTTATCCAAACAG+AGG | - | chr1_4:45716946-45716965 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1_4:45717065-45717084 | Msa0165280:intron | 25.0% |
| ! | AGTCTGTTTAGAAAAGTTTA+CGG | - | chr1_4:45717109-45717128 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTTTC+AGG | + | chr1_4:45717379-45717398 | Msa0165280:intron | 25.0% |
| !!! | ATTTTGGTACTTTGTTTTCA+GGG | + | chr1_4:45717380-45717399 | Msa0165280:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1_4:45717540-45717559 | Msa0165280:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1_4:45717613-45717632 | Msa0165280:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1_4:45717658-45717677 | Msa0165280:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1_4:45717689-45717708 | Msa0165280:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1_4:45717708-45717727 | Msa0165280:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1_4:45717771-45717790 | Msa0165280:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1_4:45717852-45717871 | Msa0165280:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1_4:45717999-45718018 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1_4:45718013-45718032 | Msa0165280:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1_4:45718395-45718414 | Msa0165280:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1_4:45718615-45718634 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1_4:45718628-45718647 | Msa0165280:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1_4:45718857-45718876 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1_4:45718858-45718877 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1_4:45718994-45719013 | Msa0165280:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1_4:45718995-45719014 | Msa0165280:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | + | chr1_4:45719234-45719253 | Msa0165280:intron | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1_4:45719424-45719443 | Msa0165280:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1_4:45719425-45719444 | Msa0165280:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1_4:45719699-45719718 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1_4:45719785-45719804 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1_4:45719877-45719896 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1_4:45719952-45719971 | Msa0165280:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | - | chr1_4:45720151-45720170 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | - | chr1_4:45720152-45720171 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | - | chr1_4:45720153-45720172 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | - | chr1_4:45720264-45720283 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1_4:45716406-45716425 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1_4:45716410-45716429 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | - | chr1_4:45716584-45716603 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1_4:45716669-45716688 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1_4:45716710-45716729 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1_4:45716709-45716728 | Msa0165280:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1_4:45716855-45716874 | Msa0165280:intron | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1_4:45716856-45716875 | Msa0165280:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1_4:45717030-45717049 | Msa0165280:intron | 30.0% |
| !!! | TTTTGGTACTTTGTTTTCAG+GGG | + | chr1_4:45717381-45717400 | Msa0165280:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1_4:45717647-45717666 | None:intergenic | 30.0% |
| GGAAACTTTGCAATCTTAAA+AGG | - | chr1_4:45717797-45717816 | None:intergenic | 30.0% | |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1_4:45717837-45717856 | Msa0165280:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | - | chr1_4:45717955-45717974 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1_4:45718041-45718060 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1_4:45718054-45718073 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1_4:45718337-45718356 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1_4:45718349-45718368 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1_4:45718357-45718376 | Msa0165280:intron | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1_4:45718358-45718377 | Msa0165280:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1_4:45718452-45718471 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1_4:45718457-45718476 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1_4:45718519-45718538 | Msa0165280:intron | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1_4:45718623-45718642 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1_4:45718634-45718653 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1_4:45718777-45718796 | Msa0165280:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1_4:45718830-45718849 | Msa0165280:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1_4:45718898-45718917 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1_4:45718956-45718975 | Msa0165280:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1_4:45718974-45718993 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1_4:45719043-45719062 | Msa0165280:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | + | chr1_4:45719152-45719171 | Msa0165280:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1_4:45719378-45719397 | Msa0165280:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | + | chr1_4:45719451-45719470 | Msa0165280:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1_4:45719658-45719677 | Msa0165280:intron | 30.0% |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1_4:45719782-45719801 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1_4:45719876-45719895 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1_4:45719878-45719897 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | - | chr1_4:45720002-45720021 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1_4:45720017-45720036 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | - | chr1_4:45720141-45720160 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1_4:45716415-45716434 | None:intergenic | 35.0% | |
| TATGTGATTTAGCCTCTGTT+TGG | + | chr1_4:45716931-45716950 | Msa0165280:intron | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1_4:45717249-45717268 | Msa0165280:CDS | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1_4:45717283-45717302 | Msa0165280:CDS | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1_4:45717370-45717389 | None:intergenic | 35.0% | |
| !!! | TTTGGTACTTTGTTTTCAGG+GGG | + | chr1_4:45717382-45717401 | Msa0165280:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1_4:45717427-45717446 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1_4:45717424-45717443 | Msa0165280:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1_4:45717567-45717586 | None:intergenic | 35.0% | |
| !!! | CTGCAGTTGGTTTTTAGTAT+TGG | + | chr1_4:45717582-45717601 | Msa0165280:intron | 35.0% |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1_4:45717642-45717661 | None:intergenic | 35.0% |
| ACTTTGCAATCTTAAAAGGC+CGG | - | chr1_4:45717793-45717812 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1_4:45717812-45717831 | Msa0165280:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1_4:45717857-45717876 | Msa0165280:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1_4:45717926-45717945 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1_4:45717927-45717946 | Msa0165280:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1_4:45717993-45718012 | None:intergenic | 35.0% | |
| GTTTGTGTTTCCACATCTAA+TGG | + | chr1_4:45718141-45718160 | Msa0165280:intron | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1_4:45718209-45718228 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1_4:45718213-45718232 | Msa0165280:CDS | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1_4:45718254-45718273 | Msa0165280:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1_4:45718350-45718369 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1_4:45718458-45718477 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1_4:45718455-45718474 | Msa0165280:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1_4:45718464-45718483 | Msa0165280:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1_4:45718674-45718693 | Msa0165280:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1_4:45718835-45718854 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1_4:45718883-45718902 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1_4:45718944-45718963 | Msa0165280:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1_4:45719377-45719396 | Msa0165280:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1_4:45719612-45719631 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1_4:45719718-45719737 | Msa0165280:CDS | 35.0% | |
| GACAGTAAGAAAATGCAGTA+TGG | - | chr1_4:45719750-45719769 | None:intergenic | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1_4:45719774-45719793 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1_4:45719874-45719893 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1_4:45719875-45719894 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | - | chr1_4:45719996-45720015 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1_4:45720081-45720100 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1_4:45720108-45720127 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | - | chr1_4:45720142-45720161 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | - | chr1_4:45720221-45720240 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | - | chr1_4:45720222-45720241 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | + | chr1_4:45716317-45716336 | Msa0165280:five_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1_4:45716378-45716397 | Msa0165280:CDS | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1_4:45716382-45716401 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1_4:45716396-45716415 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1_4:45716471-45716490 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1_4:45716509-45716528 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1_4:45716510-45716529 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1_4:45716552-45716571 | Msa0165280:CDS | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1_4:45716578-45716597 | None:intergenic | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1_4:45717219-45717238 | Msa0165280:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1_4:45717242-45717261 | Msa0165280:CDS | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1_4:45717364-45717383 | Msa0165280:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1_4:45717496-45717515 | Msa0165280:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1_4:45717566-45717585 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1_4:45717569-45717588 | Msa0165280:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1_4:45717662-45717681 | Msa0165280:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1_4:45717675-45717694 | Msa0165280:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1_4:45717733-45717752 | Msa0165280:intron | 40.0% |
| ! | CCAAGCTTGTTCAAGGTTAA+GGG | + | chr1_4:45717734-45717753 | Msa0165280:intron | 40.0% |
| CTTGTTCAAGGTTAAGGGTT+AGG | + | chr1_4:45717739-45717758 | Msa0165280:intron | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1_4:45717818-45717837 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1_4:45718073-45718092 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1_4:45718070-45718089 | Msa0165280:CDS | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1_4:45718154-45718173 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1_4:45718246-45718265 | Msa0165280:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1_4:45718529-45718548 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1_4:45719052-45719071 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1_4:45719053-45719072 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1_4:45719454-45719473 | Msa0165280:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | + | chr1_4:45720210-45720229 | Msa0165280:three_prime_UTR | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | + | chr1_4:45720211-45720230 | Msa0165280:three_prime_UTR | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1_4:45716390-45716409 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1_4:45716467-45716486 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1_4:45716529-45716548 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1_4:45716530-45716549 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1_4:45716864-45716883 | Msa0165280:intron | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1_4:45717234-45717253 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1_4:45717254-45717273 | Msa0165280:CDS | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1_4:45717300-45717319 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1_4:45717340-45717359 | Msa0165280:intron | 45.0% | |
| !!! | GTACTTTGTTTTCAGGGGGT+GGG | + | chr1_4:45717386-45717405 | Msa0165280:intron | 45.0% |
| !! | GCTCAGTCTTCTATTTCTGC+CGG | + | chr1_4:45717455-45717474 | Msa0165280:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1_4:45717464-45717483 | Msa0165280:CDS | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1_4:45717477-45717496 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1_4:45717481-45717500 | Msa0165280:CDS | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1_4:45717560-45717579 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1_4:45717727-45717746 | Msa0165280:intron | 45.0% |
| CCCTTAACCTTGAACAAGCT+TGG | - | chr1_4:45717737-45717756 | None:intergenic | 45.0% | |
| AGATGCCATCGATGATGTCT+TGG | + | chr1_4:45718201-45718220 | Msa0165280:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1_4:45718363-45718382 | Msa0165280:intron | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1_4:45718434-45718453 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1_4:45718650-45718669 | Msa0165280:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1_4:45718668-45718687 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1_4:45718669-45718688 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1_4:45718670-45718689 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1_4:45719013-45719032 | Msa0165280:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1_4:45719532-45719551 | Msa0165280:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1_4:45719560-45719579 | Msa0165280:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1_4:45719681-45719700 | Msa0165280:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1_4:45720097-45720116 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1_4:45720112-45720131 | Msa0165280:CDS | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1_4:45719353-45719372 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1_4:45719352-45719371 | Msa0165280:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1_4:45716526-45716545 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1_4:45716527-45716546 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1_4:45716528-45716547 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1_4:45716540-45716559 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1_4:45716568-45716587 | Msa0165280:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1_4:45717304-45717323 | Msa0165280:CDS | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | + | chr1_4:45717324-45717343 | Msa0165280:CDS | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1_4:45717343-45717362 | Msa0165280:intron | 50.0% | |
| !!! | GGTACTTTGTTTTCAGGGGG+TGG | + | chr1_4:45717385-45717404 | Msa0165280:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1_4:45717475-45717494 | Msa0165280:CDS | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1_4:45718439-45718458 | Msa0165280:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1_4:45718444-45718463 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1_4:45718536-45718555 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1_4:45718649-45718668 | Msa0165280:intron | 50.0% |
| GGACAAACAGTTGAGCGACA+TGG | + | chr1_4:45718695-45718714 | Msa0165280:intron | 50.0% | |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1_4:45719556-45719575 | Msa0165280:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1_4:45720115-45720134 | Msa0165280:CDS | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1_4:45716525-45716544 | Msa0165280:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1_4:45717263-45717282 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1_4:45717260-45717279 | Msa0165280:CDS | 55.0% | |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1_4:45719537-45719556 | Msa0165280:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1_4:45719679-45719698 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1_4:45719856-45719875 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1_4:45719861-45719880 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1_4:45719866-45719885 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1_4:45719552-45719571 | Msa0165280:CDS | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1_4:45719857-45719876 | None:intergenic | 60.0% | |
| CGCGCGCGCACACACACACT+TGG | + | chr1_4:45719200-45719219 | Msa0165280:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45716276 | 45720296 | 45716276 | ID=Msa0165280;Name=Msa0165280 |
| chr1_4 | mRNA | 45716276 | 45720296 | 45716276 | ID=Msa0165280-mRNA-1;Parent=Msa0165280;Name=Msa0165280-mRNA-1;_AED=0.19;_eAED=0.19;_QI=78|0.88|1|1|1|1|10|142|199 |
| chr1_4 | exon | 45716276 | 45716399 | 45716276 | ID=Msa0165280-mRNA-1:exon:13063;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45716545 | 45716589 | 45716545 | ID=Msa0165280-mRNA-1:exon:13064;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45716713 | 45716747 | 45716713 | ID=Msa0165280-mRNA-1:exon:13065;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45717241 | 45717345 | 45717241 | ID=Msa0165280-mRNA-1:exon:13066;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45717446 | 45717517 | 45717446 | ID=Msa0165280-mRNA-1:exon:13067;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45718029 | 45718100 | 45718029 | ID=Msa0165280-mRNA-1:exon:13068;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45718187 | 45718267 | 45718187 | ID=Msa0165280-mRNA-1:exon:13069;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45719538 | 45719573 | 45719538 | ID=Msa0165280-mRNA-1:exon:13070;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45719684 | 45719739 | 45719684 | ID=Msa0165280-mRNA-1:exon:13071;Parent=Msa0165280-mRNA-1 |
| chr1_4 | exon | 45720103 | 45720296 | 45720103 | ID=Msa0165280-mRNA-1:exon:13072;Parent=Msa0165280-mRNA-1 |
| chr1_4 | five_prime_UTR | 45716276 | 45716353 | 45716276 | ID=Msa0165280-mRNA-1:five_prime_utr;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45716354 | 45716399 | 45716354 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45716545 | 45716589 | 45716545 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45716713 | 45716747 | 45716713 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45717241 | 45717345 | 45717241 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45717446 | 45717517 | 45717446 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45718029 | 45718100 | 45718029 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45718187 | 45718267 | 45718187 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45719538 | 45719573 | 45719538 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45719684 | 45719739 | 45719684 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | CDS | 45720103 | 45720154 | 45720103 | ID=Msa0165280-mRNA-1:cds;Parent=Msa0165280-mRNA-1 |
| chr1_4 | three_prime_UTR | 45720155 | 45720296 | 45720155 | ID=Msa0165280-mRNA-1:three_prime_utr;Parent=Msa0165280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
