Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165240 | XP_024635334.1 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.50e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165240 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165240 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0103240 | Msa0165240 | 0.803070 | 4.154118e-49 | -8.615850e-47 |
| Msa0165240 | Msa0165280 | 0.869464 | 3.037513e-66 | -8.615850e-47 |
| Msa0165240 | Msa0365860 | 0.802156 | 6.412644e-49 | -8.615850e-47 |
| Msa0165240 | Msa0419720 | 0.808192 | 3.494561e-50 | -8.615850e-47 |
| Msa0165240 | Msa0511770 | 0.819751 | 9.854488e-53 | -8.615850e-47 |
| Msa0165240 | Msa0751010 | 0.819315 | 1.238685e-52 | -8.615850e-47 |
| Msa0165240 | Msa0780930 | 0.823328 | 1.469739e-53 | -8.615850e-47 |
| Msa0165240 | Msa0794050 | 0.809322 | 2.004087e-50 | -8.615850e-47 |
| Msa0165240 | Msa0818770 | 0.815229 | 1.028836e-51 | -8.615850e-47 |
| Msa0165240 | Msa0944200 | 0.806042 | 9.967959e-50 | -8.615850e-47 |
| Msa0165240 | Msa0944610 | 0.834136 | 3.568598e-56 | -8.615850e-47 |
| Msa0165240 | Msa1132310 | 0.810197 | 1.299444e-50 | -8.615850e-47 |
| Msa0165240 | Msa1202580 | 0.804502 | 2.094541e-49 | -8.615850e-47 |
| Msa0165240 | Msa1262890 | 0.803786 | 2.952420e-49 | -8.615850e-47 |
| Msa0165240 | Msa1275110 | 0.804400 | 2.199592e-49 | -8.615850e-47 |
| Msa0165240 | Msa1307600 | 0.815121 | 1.087179e-51 | -8.615850e-47 |
| Msa0165240 | Msa1351540 | 0.804293 | 2.315338e-49 | -8.615850e-47 |
| Msa0165240 | Msa1454450 | 0.828468 | 8.839153e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165240 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa0165240 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa0165240 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa0165240 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa0165240 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa0165240 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165240 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa0165240 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa0165240 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa0165240 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa0165240 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa0165240 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa0165240 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa0165240 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1_4:+45667751 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1_4:+45667732 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | 1_4:-45669485 | Msa0165240:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1_4:+45665697 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1_4:-45668306 | Msa0165240:intron |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1_4:+45668505 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1_4:-45668519 | Msa0165240:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1_4:-45666250 | Msa0165240:intron |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1_4:-45668542 | Msa0165240:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1_4:-45665690 | Msa0165240:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | 1_4:-45669536 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1_4:-45669250 | Msa0165240:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1_4:-45667732 | Msa0165240:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1_4:-45668327 | Msa0165240:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1_4:+45669227 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1_4:-45668338 | Msa0165240:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1_4:-45666270 | Msa0165240:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1_4:-45669424 | Msa0165240:intron |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1_4:-45667556 | Msa0165240:intron |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1_4:-45668548 | Msa0165240:CDS |
| GCTCAGTCTTCTATTTCTGC+CGG | 0.508543 | 1_4:-45668347 | Msa0165240:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1_4:-45666121 | Msa0165240:CDS |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1_4:+45669221 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1_4:-45667601 | Msa0165240:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1_4:-45668553 | Msa0165240:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1_4:-45665687 | Msa0165240:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1_4:-45666084 | Msa0165240:intron |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1_4:-45668560 | Msa0165240:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1_4:-45668321 | Msa0165240:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1_4:+45668328 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1_4:+45668542 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1_4:-45668498 | Msa0165240:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1_4:+45667596 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1_4:-45669234 | Msa0165240:intron |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1_4:-45667589 | Msa0165240:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1_4:-45668478 | Msa0165240:intron |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1_4:-45666265 | Msa0165240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATTTACATTTTTTTTT+TGG | - | chr1_4:45665885-45665904 | Msa0165240:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | + | chr1_4:45665932-45665951 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | + | chr1_4:45665933-45665952 | None:intergenic | 15.0% |
| !! | CACATAAAAAAAAAAAAACT+AGG | + | chr1_4:45666169-45666188 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | - | chr1_4:45666955-45666974 | Msa0165240:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | + | chr1_4:45667743-45667762 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | + | chr1_4:45668363-45668382 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | - | chr1_4:45668608-45668627 | Msa0165240:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | - | chr1_4:45668744-45668763 | Msa0165240:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | - | chr1_4:45668764-45668783 | Msa0165240:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | - | chr1_4:45666065-45666084 | Msa0165240:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | - | chr1_4:45667013-45667032 | Msa0165240:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | - | chr1_4:45667105-45667124 | Msa0165240:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | - | chr1_4:45667635-45667654 | Msa0165240:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | - | chr1_4:45667841-45667860 | Msa0165240:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | - | chr1_4:45667974-45667993 | Msa0165240:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | - | chr1_4:45668379-45668398 | Msa0165240:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | - | chr1_4:45668380-45668399 | Msa0165240:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | + | chr1_4:45668536-45668555 | None:intergenic | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | + | chr1_4:45668579-45668598 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | - | chr1_4:45668768-45668787 | Msa0165240:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | + | chr1_4:45669041-45669060 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | + | chr1_4:45665726-45665745 | None:intergenic | 25.0% |
| ! | ATTAATTAGATGTATTCCAC+AGG | - | chr1_4:45665943-45665962 | Msa0165240:intron | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | + | chr1_4:45666054-45666073 | None:intergenic | 25.0% |
| ! | TAAGTTATTTATCCAAACAG+AGG | + | chr1_4:45666198-45666217 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr1_4:45666317-45666336 | Msa0165240:intron | 25.0% |
| ! | AGTCTGTTTAGAAAAGTTTA+CGG | + | chr1_4:45666361-45666380 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTTTC+AGG | - | chr1_4:45666631-45666650 | Msa0165240:intron | 25.0% |
| !!! | ATTTTGGTACTTTGTTTTCA+GGG | - | chr1_4:45666632-45666651 | Msa0165240:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | - | chr1_4:45666792-45666811 | Msa0165240:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | - | chr1_4:45666865-45666884 | Msa0165240:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | - | chr1_4:45666910-45666929 | Msa0165240:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | - | chr1_4:45666941-45666960 | Msa0165240:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | - | chr1_4:45666960-45666979 | Msa0165240:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | - | chr1_4:45667023-45667042 | Msa0165240:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | - | chr1_4:45667104-45667123 | Msa0165240:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | + | chr1_4:45667251-45667270 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | - | chr1_4:45667265-45667284 | Msa0165240:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | - | chr1_4:45667647-45667666 | Msa0165240:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | + | chr1_4:45667867-45667886 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | - | chr1_4:45667880-45667899 | Msa0165240:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | + | chr1_4:45668109-45668128 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | + | chr1_4:45668110-45668129 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | - | chr1_4:45668246-45668265 | Msa0165240:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | - | chr1_4:45668247-45668266 | Msa0165240:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | - | chr1_4:45668486-45668505 | Msa0165240:CDS | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | - | chr1_4:45668676-45668695 | Msa0165240:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | - | chr1_4:45668677-45668696 | Msa0165240:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | + | chr1_4:45668951-45668970 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | + | chr1_4:45669037-45669056 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | + | chr1_4:45669129-45669148 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | - | chr1_4:45669204-45669223 | Msa0165240:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | + | chr1_4:45669403-45669422 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | + | chr1_4:45669404-45669423 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | + | chr1_4:45669405-45669424 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | + | chr1_4:45669516-45669535 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | + | chr1_4:45665658-45665677 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | + | chr1_4:45665662-45665681 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | + | chr1_4:45665836-45665855 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | + | chr1_4:45665921-45665940 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | + | chr1_4:45665962-45665981 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | - | chr1_4:45665961-45665980 | Msa0165240:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | - | chr1_4:45666107-45666126 | Msa0165240:CDS | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | - | chr1_4:45666108-45666127 | Msa0165240:CDS | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | - | chr1_4:45666282-45666301 | Msa0165240:intron | 30.0% |
| !!! | TTTTGGTACTTTGTTTTCAG+GGG | - | chr1_4:45666633-45666652 | Msa0165240:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | + | chr1_4:45666899-45666918 | None:intergenic | 30.0% |
| GGAAACTTTGCAATCTTAAA+AGG | + | chr1_4:45667049-45667068 | None:intergenic | 30.0% | |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | - | chr1_4:45667089-45667108 | Msa0165240:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | + | chr1_4:45667207-45667226 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | + | chr1_4:45667293-45667312 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | + | chr1_4:45667306-45667325 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | + | chr1_4:45667589-45667608 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | + | chr1_4:45667601-45667620 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | - | chr1_4:45667609-45667628 | Msa0165240:CDS | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | - | chr1_4:45667610-45667629 | Msa0165240:CDS | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | + | chr1_4:45667704-45667723 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | + | chr1_4:45667709-45667728 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | - | chr1_4:45667771-45667790 | Msa0165240:CDS | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | + | chr1_4:45667875-45667894 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | + | chr1_4:45667886-45667905 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | - | chr1_4:45668029-45668048 | Msa0165240:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | - | chr1_4:45668082-45668101 | Msa0165240:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | + | chr1_4:45668150-45668169 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | - | chr1_4:45668208-45668227 | Msa0165240:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | + | chr1_4:45668226-45668245 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | - | chr1_4:45668295-45668314 | Msa0165240:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | - | chr1_4:45668404-45668423 | Msa0165240:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | - | chr1_4:45668630-45668649 | Msa0165240:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | - | chr1_4:45668703-45668722 | Msa0165240:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | - | chr1_4:45668910-45668929 | Msa0165240:intron | 30.0% |
| ! | TCTTTAAAAACTAAGGATGG+AGG | + | chr1_4:45669034-45669053 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | + | chr1_4:45669128-45669147 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | + | chr1_4:45669130-45669149 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | + | chr1_4:45669254-45669273 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | + | chr1_4:45669269-45669288 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | + | chr1_4:45669393-45669412 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | + | chr1_4:45665667-45665686 | None:intergenic | 35.0% | |
| TATGTGATTTAGCCTCTGTT+TGG | - | chr1_4:45666183-45666202 | Msa0165240:intron | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | - | chr1_4:45666501-45666520 | Msa0165240:intron | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | - | chr1_4:45666535-45666554 | Msa0165240:intron | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | + | chr1_4:45666622-45666641 | None:intergenic | 35.0% | |
| !!! | TTTGGTACTTTGTTTTCAGG+GGG | - | chr1_4:45666634-45666653 | Msa0165240:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | + | chr1_4:45666679-45666698 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | - | chr1_4:45666676-45666695 | Msa0165240:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | + | chr1_4:45666819-45666838 | None:intergenic | 35.0% | |
| !!! | CTGCAGTTGGTTTTTAGTAT+TGG | - | chr1_4:45666834-45666853 | Msa0165240:intron | 35.0% |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | + | chr1_4:45666894-45666913 | None:intergenic | 35.0% |
| ACTTTGCAATCTTAAAAGGC+CGG | + | chr1_4:45667045-45667064 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | - | chr1_4:45667064-45667083 | Msa0165240:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | - | chr1_4:45667109-45667128 | Msa0165240:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | + | chr1_4:45667178-45667197 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | - | chr1_4:45667179-45667198 | Msa0165240:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | + | chr1_4:45667245-45667264 | None:intergenic | 35.0% | |
| GTTTGTGTTTCCACATCTAA+TGG | - | chr1_4:45667393-45667412 | Msa0165240:intron | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | + | chr1_4:45667461-45667480 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | - | chr1_4:45667465-45667484 | Msa0165240:intron | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | - | chr1_4:45667506-45667525 | Msa0165240:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | + | chr1_4:45667602-45667621 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | + | chr1_4:45667710-45667729 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | - | chr1_4:45667707-45667726 | Msa0165240:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | - | chr1_4:45667716-45667735 | Msa0165240:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | - | chr1_4:45667926-45667945 | Msa0165240:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | + | chr1_4:45668087-45668106 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | + | chr1_4:45668135-45668154 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | - | chr1_4:45668196-45668215 | Msa0165240:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | - | chr1_4:45668629-45668648 | Msa0165240:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | + | chr1_4:45668864-45668883 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | - | chr1_4:45668970-45668989 | Msa0165240:intron | 35.0% | |
| GACAGTAAGAAAATGCAGTA+TGG | + | chr1_4:45669002-45669021 | None:intergenic | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | + | chr1_4:45669026-45669045 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | + | chr1_4:45669126-45669145 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | + | chr1_4:45669127-45669146 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | + | chr1_4:45669248-45669267 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | + | chr1_4:45669333-45669352 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | + | chr1_4:45669360-45669379 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | + | chr1_4:45669394-45669413 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | + | chr1_4:45669473-45669492 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | + | chr1_4:45669474-45669493 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | - | chr1_4:45665569-45665588 | Msa0165240:three_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | - | chr1_4:45665630-45665649 | Msa0165240:three_prime_UTR | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | + | chr1_4:45665634-45665653 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | + | chr1_4:45665648-45665667 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | + | chr1_4:45665723-45665742 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | + | chr1_4:45665761-45665780 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | + | chr1_4:45665762-45665781 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | - | chr1_4:45665804-45665823 | Msa0165240:intron | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | + | chr1_4:45665830-45665849 | None:intergenic | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | - | chr1_4:45666471-45666490 | Msa0165240:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | - | chr1_4:45666494-45666513 | Msa0165240:intron | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | - | chr1_4:45666616-45666635 | Msa0165240:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | - | chr1_4:45666748-45666767 | Msa0165240:intron | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | + | chr1_4:45666818-45666837 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | - | chr1_4:45666821-45666840 | Msa0165240:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | - | chr1_4:45666914-45666933 | Msa0165240:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | - | chr1_4:45666927-45666946 | Msa0165240:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | - | chr1_4:45666985-45667004 | Msa0165240:intron | 40.0% |
| ! | CCAAGCTTGTTCAAGGTTAA+GGG | - | chr1_4:45666986-45667005 | Msa0165240:intron | 40.0% |
| CTTGTTCAAGGTTAAGGGTT+AGG | - | chr1_4:45666991-45667010 | Msa0165240:intron | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | + | chr1_4:45667070-45667089 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | + | chr1_4:45667325-45667344 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | - | chr1_4:45667322-45667341 | Msa0165240:intron | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | + | chr1_4:45667406-45667425 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | - | chr1_4:45667498-45667517 | Msa0165240:intron | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | + | chr1_4:45667781-45667800 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | + | chr1_4:45668304-45668323 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | + | chr1_4:45668305-45668324 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | - | chr1_4:45668706-45668725 | Msa0165240:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | - | chr1_4:45669462-45669481 | Msa0165240:exon | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | - | chr1_4:45669463-45669482 | Msa0165240:exon | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | + | chr1_4:45665642-45665661 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | + | chr1_4:45665719-45665738 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | + | chr1_4:45665781-45665800 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | + | chr1_4:45665782-45665801 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | - | chr1_4:45666116-45666135 | Msa0165240:CDS | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | + | chr1_4:45666486-45666505 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | - | chr1_4:45666506-45666525 | Msa0165240:intron | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | + | chr1_4:45666552-45666571 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | - | chr1_4:45666592-45666611 | Msa0165240:intron | 45.0% | |
| !!! | GTACTTTGTTTTCAGGGGGT+GGG | - | chr1_4:45666638-45666657 | Msa0165240:intron | 45.0% |
| !! | GCTCAGTCTTCTATTTCTGC+CGG | - | chr1_4:45666707-45666726 | Msa0165240:intron | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | - | chr1_4:45666716-45666735 | Msa0165240:intron | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | + | chr1_4:45666729-45666748 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | - | chr1_4:45666733-45666752 | Msa0165240:intron | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | + | chr1_4:45666812-45666831 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | - | chr1_4:45666979-45666998 | Msa0165240:intron | 45.0% |
| CCCTTAACCTTGAACAAGCT+TGG | + | chr1_4:45666989-45667008 | None:intergenic | 45.0% | |
| AGATGCCATCGATGATGTCT+TGG | - | chr1_4:45667453-45667472 | Msa0165240:intron | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | - | chr1_4:45667615-45667634 | Msa0165240:CDS | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | + | chr1_4:45667686-45667705 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | - | chr1_4:45667902-45667921 | Msa0165240:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | + | chr1_4:45667920-45667939 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | + | chr1_4:45667921-45667940 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | + | chr1_4:45667922-45667941 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | - | chr1_4:45668265-45668284 | Msa0165240:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | - | chr1_4:45668784-45668803 | Msa0165240:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | - | chr1_4:45668812-45668831 | Msa0165240:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | - | chr1_4:45668933-45668952 | Msa0165240:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | + | chr1_4:45669349-45669368 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | - | chr1_4:45669364-45669383 | Msa0165240:intron | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | + | chr1_4:45668605-45668624 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | - | chr1_4:45668604-45668623 | Msa0165240:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | + | chr1_4:45665778-45665797 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | + | chr1_4:45665779-45665798 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | + | chr1_4:45665780-45665799 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | + | chr1_4:45665792-45665811 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | - | chr1_4:45665820-45665839 | Msa0165240:intron | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | - | chr1_4:45666556-45666575 | Msa0165240:intron | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | - | chr1_4:45666576-45666595 | Msa0165240:intron | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | - | chr1_4:45666595-45666614 | Msa0165240:intron | 50.0% | |
| !!! | GGTACTTTGTTTTCAGGGGG+TGG | - | chr1_4:45666637-45666656 | Msa0165240:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | - | chr1_4:45666727-45666746 | Msa0165240:intron | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | - | chr1_4:45667691-45667710 | Msa0165240:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | + | chr1_4:45667696-45667715 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | + | chr1_4:45667788-45667807 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | - | chr1_4:45667901-45667920 | Msa0165240:intron | 50.0% |
| GGACAAACAGTTGAGCGACA+TGG | - | chr1_4:45667947-45667966 | Msa0165240:intron | 50.0% | |
| ! | GTGGATGTTGCTTCACAGGT+TGG | - | chr1_4:45668808-45668827 | Msa0165240:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | - | chr1_4:45669367-45669386 | Msa0165240:intron | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | - | chr1_4:45665777-45665796 | Msa0165240:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | + | chr1_4:45666515-45666534 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | - | chr1_4:45666512-45666531 | Msa0165240:intron | 55.0% | |
| GGTACTCGATGAAATCGGCG+TGG | - | chr1_4:45668789-45668808 | Msa0165240:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | + | chr1_4:45668931-45668950 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | + | chr1_4:45669108-45669127 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | + | chr1_4:45669113-45669132 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | + | chr1_4:45669118-45669137 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | - | chr1_4:45668804-45668823 | Msa0165240:intron | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | + | chr1_4:45669109-45669128 | None:intergenic | 60.0% | |
| CGCGCGCGCACACACACACT+TGG | - | chr1_4:45668452-45668471 | Msa0165240:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 45665528 | 45669548 | 45665528 | ID=Msa0165240;Name=Msa0165240 |
| chr1_4 | mRNA | 45665528 | 45669548 | 45665528 | ID=Msa0165240-mRNA-1;Parent=Msa0165240;Name=Msa0165240-mRNA-1;_AED=0.19;_eAED=0.19;_QI=78|0.88|1|1|0.77|0.7|10|142|199 |
| chr1_4 | exon | 45665528 | 45665721 | 45665528 | ID=Msa0165240-mRNA-1:exon:13061;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45666085 | 45666140 | 45666085 | ID=Msa0165240-mRNA-1:exon:13060;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45666251 | 45666286 | 45666251 | ID=Msa0165240-mRNA-1:exon:13059;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45667557 | 45667637 | 45667557 | ID=Msa0165240-mRNA-1:exon:13058;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45667724 | 45667795 | 45667724 | ID=Msa0165240-mRNA-1:exon:13057;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45668307 | 45668378 | 45668307 | ID=Msa0165240-mRNA-1:exon:13056;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45668479 | 45668583 | 45668479 | ID=Msa0165240-mRNA-1:exon:13055;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45669077 | 45669111 | 45669077 | ID=Msa0165240-mRNA-1:exon:13054;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45669235 | 45669279 | 45669235 | ID=Msa0165240-mRNA-1:exon:13053;Parent=Msa0165240-mRNA-1 |
| chr1_4 | exon | 45669425 | 45669548 | 45669425 | ID=Msa0165240-mRNA-1:exon:13052;Parent=Msa0165240-mRNA-1 |
| chr1_4 | five_prime_UTR | 45669471 | 45669548 | 45669471 | ID=Msa0165240-mRNA-1:five_prime_utr;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45669425 | 45669470 | 45669425 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45669235 | 45669279 | 45669235 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45669077 | 45669111 | 45669077 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45668479 | 45668583 | 45668479 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45668307 | 45668378 | 45668307 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45667724 | 45667795 | 45667724 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45667557 | 45667637 | 45667557 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45666251 | 45666286 | 45666251 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45666085 | 45666140 | 45666085 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | CDS | 45665670 | 45665721 | 45665670 | ID=Msa0165240-mRNA-1:cds;Parent=Msa0165240-mRNA-1 |
| chr1_4 | three_prime_UTR | 45665528 | 45665669 | 45665528 | ID=Msa0165240-mRNA-1:three_prime_utr;Parent=Msa0165240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
