Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165770 | sp|Q9FR37|AMI1_ARATH | 65.083 | 421 | 143 | 3 | 1 | 417 | 1 | 421 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165770 | G7I823 | 95.981 | 423 | 17 | 0 | 1 | 423 | 1 | 423 | 0.0 | 840 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0127470 | Msa0165770 | 0.862048 | 6.677107e-64 | -8.615850e-47 |
| Msa0165770 | Msa0287010 | 0.800964 | 1.125576e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165770 | MtrunA17_Chr1g0191741 | 95.981 | 423 | 17 | 0 | 1 | 423 | 1 | 423 | 0.0 | 840 |
| Msa0165770 | MtrunA17_Chr8g0393041 | 51.010 | 396 | 193 | 1 | 28 | 423 | 64 | 458 | 3.63e-137 | 405 |
| Msa0165770 | MtrunA17_Chr4g0050371 | 48.341 | 422 | 212 | 2 | 6 | 423 | 48 | 467 | 5.34e-130 | 387 |
| Msa0165770 | MtrunA17_Chr2g0279961 | 37.255 | 153 | 95 | 1 | 20 | 172 | 189 | 340 | 1.74e-21 | 97.1 |
| Msa0165770 | MtrunA17_Chr8g0384851 | 41.611 | 149 | 86 | 1 | 27 | 175 | 203 | 350 | 3.31e-19 | 90.1 |
| Msa0165770 | MtrunA17_Chr8g0385461 | 29.651 | 172 | 114 | 3 | 26 | 196 | 225 | 390 | 1.78e-17 | 84.7 |
| Msa0165770 | MtrunA17_Chr3g0097801 | 47.321 | 112 | 59 | 0 | 63 | 174 | 141 | 252 | 2.29e-16 | 81.3 |
| Msa0165770 | MtrunA17_Chr3g0130801 | 36.913 | 149 | 92 | 1 | 27 | 175 | 267 | 413 | 2.30e-16 | 81.3 |
| Msa0165770 | MtrunA17_Chr8g0377651 | 39.496 | 119 | 66 | 2 | 63 | 176 | 140 | 257 | 1.35e-14 | 75.5 |
| Msa0165770 | MtrunA17_Chr8g0377641 | 38.655 | 119 | 67 | 2 | 63 | 176 | 137 | 254 | 5.60e-14 | 73.6 |
| Msa0165770 | MtrunA17_Chr8g0377681 | 39.496 | 119 | 66 | 3 | 63 | 176 | 137 | 254 | 7.32e-14 | 73.2 |
| Msa0165770 | MtrunA17_Chr8g0377701 | 38.655 | 119 | 67 | 3 | 63 | 176 | 141 | 258 | 1.96e-13 | 72.0 |
| Msa0165770 | MtrunA17_Chr8g0377691 | 39.496 | 119 | 66 | 3 | 63 | 176 | 140 | 257 | 4.96e-13 | 70.9 |
| Msa0165770 | MtrunA17_Chr4g0037521 | 35.606 | 132 | 75 | 3 | 63 | 188 | 132 | 259 | 1.44e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0165770 | AT1G08980.1 | 65.083 | 421 | 143 | 3 | 1 | 417 | 1 | 421 | 0.0 | 548 |
| Msa0165770 | AT3G17970.2 | 51.010 | 396 | 189 | 2 | 30 | 423 | 61 | 453 | 2.82e-134 | 397 |
| Msa0165770 | AT3G17970.1 | 51.010 | 396 | 189 | 2 | 30 | 423 | 61 | 453 | 1.35e-133 | 396 |
| Msa0165770 | AT5G09420.1 | 48.578 | 422 | 211 | 3 | 6 | 422 | 46 | 466 | 2.10e-133 | 396 |
| Msa0165770 | AT5G64440.1 | 35.570 | 149 | 95 | 1 | 27 | 175 | 197 | 344 | 2.48e-20 | 94.0 |
| Msa0165770 | AT5G07360.1 | 33.553 | 152 | 94 | 3 | 26 | 176 | 267 | 412 | 1.54e-17 | 85.5 |
| Msa0165770 | AT5G07360.3 | 33.553 | 152 | 94 | 3 | 26 | 176 | 267 | 412 | 1.54e-17 | 85.5 |
| Msa0165770 | AT3G25660.1 | 46.429 | 112 | 60 | 0 | 63 | 174 | 142 | 253 | 3.40e-16 | 80.9 |
| Msa0165770 | AT5G07360.2 | 32.237 | 152 | 89 | 4 | 26 | 176 | 267 | 405 | 7.41e-14 | 73.9 |
Find 135 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATTGTTGGAGTTTC+TGG | -0.035785 | 1_4:+46534082 | Msa0165770:CDS |
| ATGTGAAAATTTCAGGATTT+TGG | 0.174447 | 1_4:+46533965 | Msa0165770:intron |
| TCTCTCATCCTTCTATAATT+TGG | 0.189742 | 1_4:-46534539 | None:intergenic |
| GATGCTCTTACTTCTCTTCT+TGG | 0.224914 | 1_4:+46533474 | Msa0165770:CDS |
| CCAACTGCACTTAAAATCTT+TGG | 0.243366 | 1_4:-46532741 | None:intergenic |
| ATATCTGTCATTCTATAATA+AGG | 0.252585 | 1_4:+46533442 | Msa0165770:CDS |
| AATCATCTTGTCAGCTTTGC+TGG | 0.254185 | 1_4:-46534326 | None:intergenic |
| AAACTTACAATGATTGATTA+AGG | 0.260467 | 1_4:-46530993 | None:intergenic |
| TTCTACTGCTCCAACAGTTT+TGG | 0.268666 | 1_4:+46531410 | Msa0165770:CDS |
| GTGACTGTGTCACTGACTTT+TGG | 0.275516 | 1_4:+46530888 | Msa0165770:five_prime_UTR |
| ATGCTCTTACTTCTCTTCTT+GGG | 0.283942 | 1_4:+46533475 | Msa0165770:CDS |
| TCATGGATGAAATGGCTTAC+AGG | 0.289533 | 1_4:+46531472 | Msa0165770:CDS |
| GATGAGTTTGTTTGTAGTTT+AGG | 0.294097 | 1_4:-46534022 | None:intergenic |
| GCCAATCAAAATTTGATGTT+TGG | 0.299933 | 1_4:+46530915 | Msa0165770:five_prime_UTR |
| TCTTCTGCACAAGGATTTCT+AGG | 0.310065 | 1_4:-46532057 | None:intergenic |
| GAATTCATCTGCACCATTCC+TGG | 0.352309 | 1_4:-46534255 | None:intergenic |
| AATGCAGTCAAACCTGATTT+AGG | 0.352459 | 1_4:+46533363 | Msa0165770:CDS |
| CATTGGAACAACTCCTGATT+TGG | 0.352802 | 1_4:-46532370 | None:intergenic |
| TTGCAGGTAAGCATACCATT+AGG | 0.355384 | 1_4:+46534194 | Msa0165770:intron |
| ATGGAAACAGCCTCAGACTA+TGG | 0.355962 | 1_4:+46531088 | Msa0165770:CDS |
| CTACTGCAGATGGTGTATTA+AGG | 0.359791 | 1_4:+46533061 | Msa0165770:intron |
| AAAGGGTATGTAGCTGGATT+CGG | 0.360080 | 1_4:+46531351 | Msa0165770:CDS |
| CTCATGATCCCCACAGTTCC+AGG | 0.370995 | 1_4:+46533992 | Msa0165770:CDS |
| GAAATTCCCGGACCTAAATC+AGG | 0.371160 | 1_4:-46533375 | None:intergenic |
| ATACGTGAAGGCCAAAGTTC+CGG | 0.379495 | 1_4:+46533101 | Msa0165770:CDS |
| TACGTGAAGGCCAAAGTTCC+GGG | 0.381544 | 1_4:+46533102 | Msa0165770:CDS |
| GAGAGAGAGTAAAATATGAT+TGG | 0.386926 | 1_4:+46534560 | Msa0165770:three_prime_UTR |
| TTTAGCCTTCTGTCAATTGT+TGG | 0.387937 | 1_4:+46534073 | Msa0165770:CDS |
| GATAATCTGAGTAGGTCTAA+TGG | 0.389947 | 1_4:-46532796 | None:intergenic |
| ATGCTTCAAACCCGGAACTT+TGG | 0.405620 | 1_4:-46533112 | None:intergenic |
| TGCAGGTAAGCATACCATTA+GGG | 0.414128 | 1_4:+46534195 | Msa0165770:intron |
| CTCTGCTCTGGCAGTATAAA+CGG | 0.415014 | 1_4:+46532012 | Msa0165770:intron |
| TAAGAAGTCACAAAATTGAT+TGG | 0.415192 | 1_4:-46534492 | None:intergenic |
| CTCAGACTATGGAGCATTCA+TGG | 0.418490 | 1_4:+46531099 | Msa0165770:CDS |
| AGTGAATTCAGAGGAAGATC+AGG | 0.421144 | 1_4:-46531154 | None:intergenic |
| AAGGGTATGTAGCTGGATTC+GGG | 0.422066 | 1_4:+46531352 | Msa0165770:CDS |
| CTGGATTCGGGAATCCTGAT+TGG | 0.427101 | 1_4:+46531364 | Msa0165770:CDS |
| TTGCATAGCCAAATTATAGA+AGG | 0.428413 | 1_4:+46534531 | Msa0165770:three_prime_UTR |
| AACGGAGAAAATATACACTA+TGG | 0.428548 | 1_4:+46532030 | Msa0165770:CDS |
| ATAATCTGAGTAGGTCTAAT+GGG | 0.431827 | 1_4:-46532795 | None:intergenic |
| TGATGAGTCCTTGCCCAATC+AGG | 0.432179 | 1_4:-46531378 | None:intergenic |
| CATCAGTTTCTCTGGTGGCC+AGG | 0.435075 | 1_4:+46534237 | Msa0165770:CDS |
| TCTCCCTGCATCAGTTTCTC+TGG | 0.435603 | 1_4:+46534229 | Msa0165770:CDS |
| AAGCTTGTGGATTTCTCTCT+AGG | 0.437688 | 1_4:+46532129 | Msa0165770:CDS |
| CATGGCAGAATCTCCAAATC+AGG | 0.442265 | 1_4:+46532357 | Msa0165770:CDS |
| ACACAGCAGGACAAAACAAT+TGG | 0.444513 | 1_4:+46530862 | None:intergenic |
| AGATCAGGGGAAGAAGAAGT+TGG | 0.455048 | 1_4:-46531139 | None:intergenic |
| TGTGCAGAAGACCGAGTACC+TGG | 0.460107 | 1_4:+46532069 | Msa0165770:CDS |
| TCAATCTAGGATGGTTTGCT+AGG | 0.462775 | 1_4:+46532715 | Msa0165770:intron |
| GTATCAAAACTCTGTGCCAT+TGG | 0.464094 | 1_4:-46532387 | None:intergenic |
| TCAAACAGATTTGATGTGAA+AGG | 0.469333 | 1_4:+46531333 | Msa0165770:intron |
| TTTGTTTGTAGTTTAGGTGG+AGG | 0.469512 | 1_4:-46534016 | None:intergenic |
| TGCTCTTACTTCTCTTCTTG+GGG | 0.470760 | 1_4:+46533476 | Msa0165770:CDS |
| AAAGCAATACAGAAGTTGTA+TGG | 0.471747 | 1_4:+46532882 | Msa0165770:CDS |
| TATCTGTCATTCTATAATAA+GGG | 0.472049 | 1_4:+46533443 | Msa0165770:CDS |
| TAAAACTGTCATGGATGAAA+TGG | 0.474000 | 1_4:+46531464 | Msa0165770:CDS |
| GTCAAACCTGATTTAGGTCC+GGG | 0.474511 | 1_4:+46533369 | Msa0165770:CDS |
| AGTGGCTCTGCTGTTGCAGT+TGG | 0.475708 | 1_4:+46532102 | Msa0165770:CDS |
| AAAATCATAGGGACTGATAC+AGG | 0.476501 | 1_4:+46532279 | Msa0165770:intron |
| CAAACAGATTTGATGTGAAA+GGG | 0.481734 | 1_4:+46531334 | Msa0165770:intron |
| TTAAGAATAACCATGGTGAA+TGG | 0.483366 | 1_4:+46533337 | Msa0165770:CDS |
| ATTCTCCTCTGTTGTGCGTA+GGG | 0.484217 | 1_4:-46533415 | None:intergenic |
| ATTTGTGAAACTACATTGAA+AGG | 0.487229 | 1_4:-46532852 | None:intergenic |
| TGAATTCTTGCTTCACCTTG+TGG | 0.490557 | 1_4:+46534271 | Msa0165770:CDS |
| GATACGCGTTCTGAAATTCC+CGG | 0.490711 | 1_4:-46533387 | None:intergenic |
| GTTTCTCTGGTGGCCAGGAA+TGG | 0.491029 | 1_4:+46534242 | Msa0165770:CDS |
| GAGTTTGTTTGTAGTTTAGG+TGG | 0.495250 | 1_4:-46534019 | None:intergenic |
| AGATCATTATGCATCCCTAA+TGG | 0.495662 | 1_4:-46534209 | None:intergenic |
| GAGTTCCTGCATCATATTGT+GGG | 0.502454 | 1_4:+46532313 | Msa0165770:CDS |
| TGCAGTTGGTGCAAAGCTTG+TGG | 0.505836 | 1_4:+46532116 | Msa0165770:CDS |
| TGATTGGGCAAGGACTCATC+AGG | 0.506790 | 1_4:+46531380 | Msa0165770:CDS |
| AGTCAAACCTGATTTAGGTC+CGG | 0.508658 | 1_4:+46533368 | Msa0165770:CDS |
| TTAGGATTTCGTCCTTCTCA+TGG | 0.509768 | 1_4:+46532339 | Msa0165770:CDS |
| AGGTGGAGGACCTGGAACTG+TGG | 0.511646 | 1_4:-46534002 | None:intergenic |
| CTTGAAAGTGCAGCCAGTGA+TGG | 0.511834 | 1_4:-46533174 | None:intergenic |
| TGTAGTTTAGGTGGAGGACC+TGG | 0.515140 | 1_4:-46534010 | None:intergenic |
| GGCACTGCTGTTATCATCTG+TGG | 0.515751 | 1_4:+46531039 | Msa0165770:five_prime_UTR |
| TGGATTCGGGAATCCTGATT+GGG | 0.516288 | 1_4:+46531365 | Msa0165770:CDS |
| GTAGGTCTAATGGGTGTGAT+GGG | 0.520344 | 1_4:-46532786 | None:intergenic |
| GGTGGAGGACCTGGAACTGT+GGG | 0.520381 | 1_4:-46534001 | None:intergenic |
| AGTAGGTCTAATGGGTGTGA+TGG | 0.522813 | 1_4:-46532787 | None:intergenic |
| GCCACCAGAGAAACTGATGC+AGG | 0.523962 | 1_4:-46534233 | None:intergenic |
| CTCAGGACAGCCAAAACTGT+TGG | 0.528096 | 1_4:-46531420 | None:intergenic |
| TATTCTCCTCTGTTGTGCGT+AGG | 0.530597 | 1_4:-46533416 | None:intergenic |
| CAATCTAGGATGGTTTGCTA+GGG | 0.532897 | 1_4:+46532716 | Msa0165770:intron |
| GATGTGAAAGGGTATGTAGC+TGG | 0.535739 | 1_4:+46531345 | Msa0165770:CDS |
| GTGCCATGCGATTGCTTCAG+AGG | 0.540124 | 1_4:+46533196 | Msa0165770:CDS |
| AAAATCCCACAATATGATGC+AGG | 0.541556 | 1_4:-46532318 | None:intergenic |
| TTACATGTCTTTGACTGCAA+AGG | 0.544281 | 1_4:-46531179 | None:intergenic |
| TTGGAGATTCTGCCATGAGA+AGG | 0.548028 | 1_4:-46532351 | None:intergenic |
| ACAAACAAACTCATCAGACT+TGG | 0.548935 | 1_4:+46534030 | Msa0165770:CDS |
| CCCTGCATCAGTTTCTCTGG+TGG | 0.555780 | 1_4:+46534232 | Msa0165770:CDS |
| GAGCCACTAGAAGATCCTCC+AGG | 0.564074 | 1_4:-46532087 | None:intergenic |
| AGTTTGTAACCCACAAAACA+AGG | 0.566563 | 1_4:+46531011 | Msa0165770:five_prime_UTR |
| TAGAAGATCCTCCAGGTACT+CGG | 0.570948 | 1_4:-46532080 | None:intergenic |
| AGAGTTCCTGCATCATATTG+TGG | 0.574916 | 1_4:+46532312 | Msa0165770:CDS |
| GCACTGCTGTTATCATCTGT+GGG | 0.574976 | 1_4:+46531040 | Msa0165770:five_prime_UTR |
| AGTATACAACATTCCATCAC+TGG | 0.575077 | 1_4:+46533161 | Msa0165770:CDS |
| CTCATGAAATGCTTCAAACC+CGG | 0.575467 | 1_4:-46533120 | None:intergenic |
| TCAGGGGAAGAAGAAGTTGG+TGG | 0.576808 | 1_4:-46531136 | None:intergenic |
| AACCCACAAAACAAGGGAAG+AGG | 0.585573 | 1_4:+46531018 | Msa0165770:five_prime_UTR |
| AGTGCAGGTGCCACTTGTGT+TGG | 0.587175 | 1_4:+46531441 | Msa0165770:CDS |
| CAAATCAGGAGTTGTTCCAA+TGG | 0.592624 | 1_4:+46532371 | Msa0165770:CDS |
| TCGGGAATCCTGATTGGGCA+AGG | 0.594720 | 1_4:+46531370 | Msa0165770:CDS |
| TACTCAGATTATCATTGCAG+AGG | 0.595678 | 1_4:+46532806 | Msa0165770:CDS |
| GTATTAAGGCATGAAATCCT+TGG | 0.599364 | 1_4:+46533075 | Msa0165770:CDS |
| CACAAGTGGCACCTGCACTC+AGG | 0.599971 | 1_4:-46531437 | None:intergenic |
| GTGAATTCAGAGGAAGATCA+GGG | 0.603806 | 1_4:-46531153 | None:intergenic |
| ATCCTCAAAACTCAATCACA+CGG | 0.608657 | 1_4:+46530940 | Msa0165770:five_prime_UTR |
| TTGTGTTGGTAAAACTGTCA+TGG | 0.611411 | 1_4:+46531455 | Msa0165770:CDS |
| GGTACTCGGTCTTCTGCACA+AGG | 0.622489 | 1_4:-46532066 | None:intergenic |
| GTACCTGGAGGATCTTCTAG+TGG | 0.622763 | 1_4:+46532084 | Msa0165770:CDS |
| CATGAATGCTCCATAGTCTG+AGG | 0.624810 | 1_4:-46531098 | None:intergenic |
| TCTGCAATGATAATCTGAGT+AGG | 0.625913 | 1_4:-46532804 | None:intergenic |
| CTGCATTGATCCATTCACCA+TGG | 0.629877 | 1_4:-46533347 | None:intergenic |
| AGCAGGACAAAACAATTGGA+AGG | 0.629905 | 1_4:+46530866 | None:intergenic |
| GGTCTAATGGGTGTGATGGG+TGG | 0.633938 | 1_4:-46532783 | None:intergenic |
| CCACCAGAGAAACTGATGCA+GGG | 0.640553 | 1_4:-46534232 | None:intergenic |
| TATGAATTTAAGAATAACCA+TGG | 0.640782 | 1_4:+46533330 | Msa0165770:CDS |
| AAAACGTAATACAGTAGACA+TGG | 0.641014 | 1_4:+46531069 | Msa0165770:exon |
| AAACTCCAACAATTGACAGA+AGG | 0.641345 | 1_4:-46534078 | None:intergenic |
| CTGCTGTTATCATCTGTGGG+TGG | 0.643613 | 1_4:+46531043 | Msa0165770:five_prime_UTR |
| TGAATTCAGAGGAAGATCAG+GGG | 0.649996 | 1_4:-46531152 | None:intergenic |
| ATACCTCTGAAGCAATCGCA+TGG | 0.654077 | 1_4:-46533199 | None:intergenic |
| GCAATACAGAAGTTGTATGG+AGG | 0.669443 | 1_4:+46532885 | Msa0165770:CDS |
| TCCTCAAAACTCAATCACAC+GGG | 0.670896 | 1_4:+46530941 | Msa0165770:five_prime_UTR |
| AATCCTTGGTGAATACGTGA+AGG | 0.671148 | 1_4:+46533089 | Msa0165770:CDS |
| TGGCCTTCACGTATTCACCA+AGG | 0.681399 | 1_4:-46533092 | None:intergenic |
| AGATGCCCTACGCACAACAG+AGG | 0.683377 | 1_4:+46533410 | Msa0165770:CDS |
| GTGGAGGACCTGGAACTGTG+GGG | 0.688610 | 1_4:-46534000 | None:intergenic |
| ATCATAGGGACTGATACAGG+AGG | 0.690646 | 1_4:+46532282 | Msa0165770:intron |
| GCAAAGGTGAGTGAATTCAG+AGG | 0.693265 | 1_4:-46531163 | None:intergenic |
| GTTTGTAACCCACAAAACAA+GGG | 0.696573 | 1_4:+46531012 | Msa0165770:five_prime_UTR |
| TATCATAAATACTCTCCACA+AGG | 0.718171 | 1_4:-46534286 | None:intergenic |
| GCAGAAGACCGAGTACCTGG+AGG | 0.734688 | 1_4:+46532072 | Msa0165770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTATTTTTCATTTTCTAA+GGG | + | chr1_4:46531579-46531598 | Msa0165770:intron | 15.0% |
| !!! | TTAGTTTTTGTTAAAATCAT+AGG | + | chr1_4:46532267-46532286 | Msa0165770:intron | 15.0% |
| !!! | TAGTTTTTGTTAAAATCATA+GGG | + | chr1_4:46532268-46532287 | Msa0165770:intron | 15.0% |
| !!! | TCTATTAAATCTCTTTTTTT+GGG | + | chr1_4:46532439-46532458 | Msa0165770:intron | 15.0% |
| !!! | TATAATTTTTATCGTGAAAA+TGG | - | chr1_4:46533829-46533848 | None:intergenic | 15.0% |
| !! | TACTTAAATAATGAAGAAAT+AGG | - | chr1_4:46534153-46534172 | None:intergenic | 15.0% |
| !! | TTATGATAACATTGAAAAAT+AGG | + | chr1_4:46534301-46534320 | Msa0165770:CDS | 15.0% |
| !! | AAACTTACAATGATTGATTA+AGG | - | chr1_4:46530996-46531015 | None:intergenic | 20.0% |
| !!! | GCATTATTTTTCATTTTCTA+AGG | + | chr1_4:46531578-46531597 | Msa0165770:intron | 20.0% |
| !!! | ATCTGTAGGTATTTTTTATT+AGG | + | chr1_4:46531898-46531917 | Msa0165770:intron | 20.0% |
| !!! | TATGTTTTTCCTTTAAATGT+AGG | + | chr1_4:46532213-46532232 | Msa0165770:intron | 20.0% |
| !!! | CTCTATTAAATCTCTTTTTT+TGG | + | chr1_4:46532438-46532457 | Msa0165770:intron | 20.0% |
| !! | ATATCTAAATTGATGTCATT+AGG | - | chr1_4:46532573-46532592 | None:intergenic | 20.0% |
| !! | ATACATATCAAACATCATTA+TGG | - | chr1_4:46532998-46533017 | None:intergenic | 20.0% |
| !! | AATGATGTTTGATATGTATT+TGG | + | chr1_4:46532999-46533018 | Msa0165770:intron | 20.0% |
| !! | TATGAATTTAAGAATAACCA+TGG | + | chr1_4:46533330-46533349 | Msa0165770:CDS | 20.0% |
| !! | ATATCTGTCATTCTATAATA+AGG | + | chr1_4:46533442-46533461 | Msa0165770:CDS | 20.0% |
| !! | TATCTGTCATTCTATAATAA+GGG | + | chr1_4:46533443-46533462 | Msa0165770:CDS | 20.0% |
| !! | TTCACGATAAAAATTATAGT+AGG | + | chr1_4:46533831-46533850 | Msa0165770:intron | 20.0% |
| !!! | TTACTTTTTTTATTACTGCA+AGG | + | chr1_4:46534352-46534371 | Msa0165770:three_prime_UTR | 20.0% |
| !!! | TACTTTTTTTATTACTGCAA+GGG | + | chr1_4:46534353-46534372 | Msa0165770:three_prime_UTR | 20.0% |
| ! | TGAAATATGAGTAAACTTTG+AGG | - | chr1_4:46531253-46531272 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTCTTTTTCTGT+TGG | + | chr1_4:46531506-46531525 | Msa0165770:intron | 25.0% |
| ! | AAGAAGTAGGTTATGTTATA+AGG | + | chr1_4:46531728-46531747 | Msa0165770:intron | 25.0% |
| ! | TACCTTTAAATCTAATCACA+AGG | + | chr1_4:46531836-46531855 | Msa0165770:intron | 25.0% |
| ! | ACCTTTAAATCTAATCACAA+GGG | + | chr1_4:46531837-46531856 | Msa0165770:intron | 25.0% |
| ! | TTACTTATAAGCTTATCTGT+AGG | + | chr1_4:46531884-46531903 | Msa0165770:intron | 25.0% |
| ! | CTTCTGTTAATTGTATAACA+CGG | + | chr1_4:46531987-46532006 | Msa0165770:intron | 25.0% |
| ! | ACTAAAGATTATTAATCCCA+CGG | - | chr1_4:46532252-46532271 | None:intergenic | 25.0% |
| !!! | TTGGTAATAATCCACAATTT+TGG | + | chr1_4:46532412-46532431 | Msa0165770:intron | 25.0% |
| ! | AATATCAATCTAGAGAACAA+GGG | - | chr1_4:46532682-46532701 | None:intergenic | 25.0% |
| ! | CTTATTCTCATATTCAATCT+AGG | + | chr1_4:46532702-46532721 | Msa0165770:intron | 25.0% |
| ! | ATTTGTGAAACTACATTGAA+AGG | - | chr1_4:46532855-46532874 | None:intergenic | 25.0% |
| ! | AAATCAAGGACTTAAACTAA+AGG | - | chr1_4:46533290-46533309 | None:intergenic | 25.0% |
| ! | TCACAGATAGTAAAAAATCA+AGG | - | chr1_4:46533304-46533323 | None:intergenic | 25.0% |
| !!! | TTTTTTACTATCTGTGACAT+AGG | + | chr1_4:46533307-46533326 | Msa0165770:intron | 25.0% |
| ! | TTGTTTATCAATATGTCTTG+AGG | - | chr1_4:46533556-46533575 | None:intergenic | 25.0% |
| !!! | TGAAGATAACTTTTTGAAGA+AGG | - | chr1_4:46533886-46533905 | None:intergenic | 25.0% |
| ! | ACAGTTTATGTGAAAATTTC+AGG | + | chr1_4:46533958-46533977 | Msa0165770:intron | 25.0% |
| !! | ATGTGAAAATTTCAGGATTT+TGG | + | chr1_4:46533965-46533984 | Msa0165770:intron | 25.0% |
| ! | TAAGAAGTCACAAAATTGAT+TGG | - | chr1_4:46534495-46534514 | None:intergenic | 25.0% |
| GCCAATCAAAATTTGATGTT+TGG | + | chr1_4:46530915-46530934 | Msa0165770:five_prime_UTR | 30.0% | |
| !! | GCCAAACATCAAATTTTGAT+TGG | - | chr1_4:46530919-46530938 | None:intergenic | 30.0% |
| AAAACGTAATACAGTAGACA+TGG | + | chr1_4:46531069-46531088 | Msa0165770:exon | 30.0% | |
| TCAAACAGATTTGATGTGAA+AGG | + | chr1_4:46531333-46531352 | Msa0165770:intron | 30.0% | |
| CAAACAGATTTGATGTGAAA+GGG | + | chr1_4:46531334-46531353 | Msa0165770:intron | 30.0% | |
| TAAAACTGTCATGGATGAAA+TGG | + | chr1_4:46531464-46531483 | Msa0165770:CDS | 30.0% | |
| CTTTCTTGTCTAAATCAAGT+TGG | + | chr1_4:46531681-46531700 | Msa0165770:intron | 30.0% | |
| TTCTGAATAATGCCACTAAA+AGG | + | chr1_4:46531775-46531794 | Msa0165770:intron | 30.0% | |
| ! | AGATTAGATACACCTTTTAG+TGG | - | chr1_4:46531790-46531809 | None:intergenic | 30.0% |
| ACCCTTGTGATTAGATTTAA+AGG | - | chr1_4:46531841-46531860 | None:intergenic | 30.0% | |
| TTTAAATCTAATCACAAGGG+TGG | + | chr1_4:46531840-46531859 | Msa0165770:intron | 30.0% | |
| CAAAAGATACAACTACTCTT+CGG | - | chr1_4:46531935-46531954 | None:intergenic | 30.0% | |
| AACGGAGAAAATATACACTA+TGG | + | chr1_4:46532030-46532049 | Msa0165770:CDS | 30.0% | |
| GCTCAAAACAACTAATGAAA+TGG | - | chr1_4:46532167-46532186 | None:intergenic | 30.0% | |
| !! | GAAGAGTATCCTACATTTAA+AGG | - | chr1_4:46532225-46532244 | None:intergenic | 30.0% |
| ! | GTAATAATCCACAATTTTGG+TGG | + | chr1_4:46532415-46532434 | Msa0165770:intron | 30.0% |
| GAATATCAATCTAGAGAACA+AGG | - | chr1_4:46532683-46532702 | None:intergenic | 30.0% | |
| TTCTCATATTCAATCTAGGA+TGG | + | chr1_4:46532706-46532725 | Msa0165770:intron | 30.0% | |
| ATAATCTGAGTAGGTCTAAT+GGG | - | chr1_4:46532798-46532817 | None:intergenic | 30.0% | |
| AAAGCAATACAGAAGTTGTA+TGG | + | chr1_4:46532882-46532901 | Msa0165770:CDS | 30.0% | |
| TTAAGAATAACCATGGTGAA+TGG | + | chr1_4:46533337-46533356 | Msa0165770:CDS | 30.0% | |
| !! | TTAGTCTTCAATCTCACTTT+TGG | + | chr1_4:46533626-46533645 | Msa0165770:intron | 30.0% |
| GATACCAAAAACAAAAGGTA+TGG | - | chr1_4:46533727-46533746 | None:intergenic | 30.0% | |
| TGCTAGATACCAAAAACAAA+AGG | - | chr1_4:46533732-46533751 | None:intergenic | 30.0% | |
| CTTCTACATATGAAGATTGT+AGG | + | chr1_4:46533776-46533795 | Msa0165770:intron | 30.0% | |
| ! | AATGAGTTGAAGACAAAGAA+TGG | - | chr1_4:46533935-46533954 | None:intergenic | 30.0% |
| ! | GATGAGTTTGTTTGTAGTTT+AGG | - | chr1_4:46534025-46534044 | None:intergenic | 30.0% |
| !! | TGCAAAGTGTTGAGAAAAAA+AGG | - | chr1_4:46534179-46534198 | None:intergenic | 30.0% |
| !!! | TTTTTTTCTCAACACTTTGC+AGG | + | chr1_4:46534178-46534197 | Msa0165770:intron | 30.0% |
| TATCATAAATACTCTCCACA+AGG | - | chr1_4:46534289-46534308 | None:intergenic | 30.0% | |
| !!! | TGAAGAAGTTTTTTGAAGTC+TGG | + | chr1_4:46534413-46534432 | Msa0165770:three_prime_UTR | 30.0% |
| TTGCATAGCCAAATTATAGA+AGG | + | chr1_4:46534531-46534550 | Msa0165770:three_prime_UTR | 30.0% | |
| TCTCTCATCCTTCTATAATT+TGG | - | chr1_4:46534542-46534561 | None:intergenic | 30.0% | |
| GAGAGAGAGTAAAATATGAT+TGG | + | chr1_4:46534560-46534579 | Msa0165770:three_prime_UTR | 30.0% | |
| ATCCTCAAAACTCAATCACA+CGG | + | chr1_4:46530940-46530959 | Msa0165770:five_prime_UTR | 35.0% | |
| AGTTTGTAACCCACAAAACA+AGG | + | chr1_4:46531011-46531030 | Msa0165770:five_prime_UTR | 35.0% | |
| GTTTGTAACCCACAAAACAA+GGG | + | chr1_4:46531012-46531031 | Msa0165770:five_prime_UTR | 35.0% | |
| TTACATGTCTTTGACTGCAA+AGG | - | chr1_4:46531182-46531201 | None:intergenic | 35.0% | |
| !! | TATGAGTAAACTTTGAGGTC+AGG | - | chr1_4:46531248-46531267 | None:intergenic | 35.0% |
| !! | TCCATGTATTTTGAACTCGA+TGG | + | chr1_4:46531291-46531310 | Msa0165770:intron | 35.0% |
| TCCATCGAGTTCAAAATACA+TGG | - | chr1_4:46531295-46531314 | None:intergenic | 35.0% | |
| ! | TTGTGTTGGTAAAACTGTCA+TGG | + | chr1_4:46531455-46531474 | Msa0165770:CDS | 35.0% |
| TTTCCACTCAGTCTAAAGAA+TGG | + | chr1_4:46531535-46531554 | Msa0165770:intron | 35.0% | |
| CTAATTCTGACTGAAGAAGT+AGG | + | chr1_4:46531715-46531734 | Msa0165770:intron | 35.0% | |
| GTAGGTTATGTTATAAGGAC+AGG | + | chr1_4:46531733-46531752 | Msa0165770:intron | 35.0% | |
| ! | CGAAGAGTAGTTGTATCTTT+TGG | + | chr1_4:46531933-46531952 | Msa0165770:intron | 35.0% |
| ! | TAGTTGTATCTTTTGGCGTT+GGG | + | chr1_4:46531940-46531959 | Msa0165770:intron | 35.0% |
| AGCACCACTCAGTTAATAAT+CGG | + | chr1_4:46532184-46532203 | Msa0165770:intron | 35.0% | |
| ACTTCCGATTATTAACTGAG+TGG | - | chr1_4:46532191-46532210 | None:intergenic | 35.0% | |
| AAAATCATAGGGACTGATAC+AGG | + | chr1_4:46532279-46532298 | Msa0165770:intron | 35.0% | |
| AAAATCCCACAATATGATGC+AGG | - | chr1_4:46532321-46532340 | None:intergenic | 35.0% | |
| ! | GCATCATATTGTGGGATTTT+AGG | + | chr1_4:46532321-46532340 | Msa0165770:CDS | 35.0% |
| TAATAGAGCCACCAAAATTG+TGG | - | chr1_4:46532426-46532445 | None:intergenic | 35.0% | |
| !! | ATTCGTTGTTCTAGAGGATA+TGG | + | chr1_4:46532465-46532484 | Msa0165770:intron | 35.0% |
| CTAGAGGATATGGAGAATAA+CGG | + | chr1_4:46532475-46532494 | Msa0165770:intron | 35.0% | |
| CCAACTGCACTTAAAATCTT+TGG | - | chr1_4:46532744-46532763 | None:intergenic | 35.0% | |
| !! | CCAAAGATTTTAAGTGCAGT+TGG | + | chr1_4:46532741-46532760 | Msa0165770:CDS | 35.0% |
| GATAATCTGAGTAGGTCTAA+TGG | - | chr1_4:46532799-46532818 | None:intergenic | 35.0% | |
| TCTGCAATGATAATCTGAGT+AGG | - | chr1_4:46532807-46532826 | None:intergenic | 35.0% | |
| TACTCAGATTATCATTGCAG+AGG | + | chr1_4:46532806-46532825 | Msa0165770:CDS | 35.0% | |
| GTATTAAGGCATGAAATCCT+TGG | + | chr1_4:46533075-46533094 | Msa0165770:CDS | 35.0% | |
| AGTATACAACATTCCATCAC+TGG | + | chr1_4:46533161-46533180 | Msa0165770:CDS | 35.0% | |
| AAGTCATCTTTGCTGAAGTA+GGG | - | chr1_4:46533240-46533259 | None:intergenic | 35.0% | |
| AAAGTCATCTTTGCTGAAGT+AGG | - | chr1_4:46533241-46533260 | None:intergenic | 35.0% | |
| AATGCAGTCAAACCTGATTT+AGG | + | chr1_4:46533363-46533382 | Msa0165770:CDS | 35.0% | |
| ATGCTCTTACTTCTCTTCTT+GGG | + | chr1_4:46533475-46533494 | Msa0165770:CDS | 35.0% | |
| TCTGCTTCTTTGCATGATTA+AGG | - | chr1_4:46533523-46533542 | None:intergenic | 35.0% | |
| !!! | CACACCATACCTTTTGTTTT+TGG | + | chr1_4:46533720-46533739 | Msa0165770:intron | 35.0% |
| TCGTGAAAATGGTTGCATAA+AGG | - | chr1_4:46533818-46533837 | None:intergenic | 35.0% | |
| TTTGTTTGTAGTTTAGGTGG+AGG | - | chr1_4:46534019-46534038 | None:intergenic | 35.0% | |
| ! | GAGTTTGTTTGTAGTTTAGG+TGG | - | chr1_4:46534022-46534041 | None:intergenic | 35.0% |
| ACAAACAAACTCATCAGACT+TGG | + | chr1_4:46534030-46534049 | Msa0165770:CDS | 35.0% | |
| ! | TTTAGCCTTCTGTCAATTGT+TGG | + | chr1_4:46534073-46534092 | Msa0165770:CDS | 35.0% |
| AAACTCCAACAATTGACAGA+AGG | - | chr1_4:46534081-46534100 | None:intergenic | 35.0% | |
| AGATCATTATGCATCCCTAA+TGG | - | chr1_4:46534212-46534231 | None:intergenic | 35.0% | |
| !!! | TGTGTCACTGACTTTTGGAT+TGG | + | chr1_4:46530893-46530912 | Msa0165770:five_prime_UTR | 40.0% |
| TCCTCAAAACTCAATCACAC+GGG | + | chr1_4:46530941-46530960 | Msa0165770:five_prime_UTR | 40.0% | |
| TGAATTCAGAGGAAGATCAG+GGG | - | chr1_4:46531155-46531174 | None:intergenic | 40.0% | |
| GTGAATTCAGAGGAAGATCA+GGG | - | chr1_4:46531156-46531175 | None:intergenic | 40.0% | |
| AGTGAATTCAGAGGAAGATC+AGG | - | chr1_4:46531157-46531176 | None:intergenic | 40.0% | |
| ! | AAAGGGTATGTAGCTGGATT+CGG | + | chr1_4:46531351-46531370 | Msa0165770:CDS | 40.0% |
| ! | TTCTACTGCTCCAACAGTTT+TGG | + | chr1_4:46531410-46531429 | Msa0165770:CDS | 40.0% |
| ! | GACAGTTTTACCAACACAAG+TGG | - | chr1_4:46531454-46531473 | None:intergenic | 40.0% |
| TCATGGATGAAATGGCTTAC+AGG | + | chr1_4:46531472-46531491 | Msa0165770:CDS | 40.0% | |
| GATGAAATGGCTTACAGGTT+TGG | + | chr1_4:46531477-46531496 | Msa0165770:intron | 40.0% | |
| CAACCATTCTTTAGACTGAG+TGG | - | chr1_4:46531541-46531560 | None:intergenic | 40.0% | |
| ! | GTAGTTGTATCTTTTGGCGT+TGG | + | chr1_4:46531939-46531958 | Msa0165770:intron | 40.0% |
| TCTTCTGCACAAGGATTTCT+AGG | - | chr1_4:46532060-46532079 | None:intergenic | 40.0% | |
| AAGCTTGTGGATTTCTCTCT+AGG | + | chr1_4:46532129-46532148 | Msa0165770:CDS | 40.0% | |
| AGAGTTCCTGCATCATATTG+TGG | + | chr1_4:46532312-46532331 | Msa0165770:CDS | 40.0% | |
| GAGTTCCTGCATCATATTGT+GGG | + | chr1_4:46532313-46532332 | Msa0165770:CDS | 40.0% | |
| TTAGGATTTCGTCCTTCTCA+TGG | + | chr1_4:46532339-46532358 | Msa0165770:CDS | 40.0% | |
| CATTGGAACAACTCCTGATT+TGG | - | chr1_4:46532373-46532392 | None:intergenic | 40.0% | |
| CAAATCAGGAGTTGTTCCAA+TGG | + | chr1_4:46532371-46532390 | Msa0165770:CDS | 40.0% | |
| GTATCAAAACTCTGTGCCAT+TGG | - | chr1_4:46532390-46532409 | None:intergenic | 40.0% | |
| !! | GCACAGAGTTTTGATACTGT+TGG | + | chr1_4:46532393-46532412 | Msa0165770:CDS | 40.0% |
| ! | TTGTGAGGCTACATTTTCGA+AGG | - | chr1_4:46532650-46532669 | None:intergenic | 40.0% |
| !! | TCAATCTAGGATGGTTTGCT+AGG | + | chr1_4:46532715-46532734 | Msa0165770:intron | 40.0% |
| !! | CAATCTAGGATGGTTTGCTA+GGG | + | chr1_4:46532716-46532735 | Msa0165770:intron | 40.0% |
| GCAATACAGAAGTTGTATGG+AGG | + | chr1_4:46532885-46532904 | Msa0165770:CDS | 40.0% | |
| CTACTGCAGATGGTGTATTA+AGG | + | chr1_4:46533061-46533080 | Msa0165770:intron | 40.0% | |
| AATCCTTGGTGAATACGTGA+AGG | + | chr1_4:46533089-46533108 | Msa0165770:CDS | 40.0% | |
| CTCATGAAATGCTTCAAACC+CGG | - | chr1_4:46533123-46533142 | None:intergenic | 40.0% | |
| AGTCAAACCTGATTTAGGTC+CGG | + | chr1_4:46533368-46533387 | Msa0165770:CDS | 40.0% | |
| GATGCTCTTACTTCTCTTCT+TGG | + | chr1_4:46533474-46533493 | Msa0165770:CDS | 40.0% | |
| TGCTCTTACTTCTCTTCTTG+GGG | + | chr1_4:46533476-46533495 | Msa0165770:CDS | 40.0% | |
| ! | ACTTGGAAATTTTTCGCGCT+AGG | + | chr1_4:46534047-46534066 | Msa0165770:CDS | 40.0% |
| ! | CTTGGAAATTTTTCGCGCTA+GGG | + | chr1_4:46534048-46534067 | Msa0165770:CDS | 40.0% |
| CTGTCAATTGTTGGAGTTTC+TGG | + | chr1_4:46534082-46534101 | Msa0165770:CDS | 40.0% | |
| !! | TGGAGTTTCTGGATTTTGTC+AGG | + | chr1_4:46534093-46534112 | Msa0165770:CDS | 40.0% |
| AGTGTTTCACAAACACGCAT+AGG | - | chr1_4:46534124-46534143 | None:intergenic | 40.0% | |
| TTGCAGGTAAGCATACCATT+AGG | + | chr1_4:46534194-46534213 | Msa0165770:intron | 40.0% | |
| TGCAGGTAAGCATACCATTA+GGG | + | chr1_4:46534195-46534214 | Msa0165770:intron | 40.0% | |
| TGAATTCTTGCTTCACCTTG+TGG | + | chr1_4:46534271-46534290 | Msa0165770:CDS | 40.0% | |
| AATCATCTTGTCAGCTTTGC+TGG | - | chr1_4:46534329-46534348 | None:intergenic | 40.0% | |
| !!! | GTGACTGTGTCACTGACTTT+TGG | + | chr1_4:46530888-46530907 | Msa0165770:five_prime_UTR | 45.0% |
| AACCCACAAAACAAGGGAAG+AGG | + | chr1_4:46531018-46531037 | Msa0165770:five_prime_UTR | 45.0% | |
| !!! | TGCCTCTTCCCTTGTTTTGT+GGG | - | chr1_4:46531023-46531042 | None:intergenic | 45.0% |
| GCACTGCTGTTATCATCTGT+GGG | + | chr1_4:46531040-46531059 | Msa0165770:five_prime_UTR | 45.0% | |
| ATGGAAACAGCCTCAGACTA+TGG | + | chr1_4:46531088-46531107 | Msa0165770:CDS | 45.0% | |
| CATGAATGCTCCATAGTCTG+AGG | - | chr1_4:46531101-46531120 | None:intergenic | 45.0% | |
| ! | CTCAGACTATGGAGCATTCA+TGG | + | chr1_4:46531099-46531118 | Msa0165770:CDS | 45.0% |
| AGATCAGGGGAAGAAGAAGT+TGG | - | chr1_4:46531142-46531161 | None:intergenic | 45.0% | |
| GCAAAGGTGAGTGAATTCAG+AGG | - | chr1_4:46531166-46531185 | None:intergenic | 45.0% | |
| ! | GATGTGAAAGGGTATGTAGC+TGG | + | chr1_4:46531345-46531364 | Msa0165770:CDS | 45.0% |
| ! | AAGGGTATGTAGCTGGATTC+GGG | + | chr1_4:46531352-46531371 | Msa0165770:CDS | 45.0% |
| TGGATTCGGGAATCCTGATT+GGG | + | chr1_4:46531365-46531384 | Msa0165770:CDS | 45.0% | |
| TATAACACGGTACTCTGCTC+TGG | + | chr1_4:46532000-46532019 | Msa0165770:intron | 45.0% | |
| CTCTGCTCTGGCAGTATAAA+CGG | + | chr1_4:46532012-46532031 | Msa0165770:intron | 45.0% | |
| TAGAAGATCCTCCAGGTACT+CGG | - | chr1_4:46532083-46532102 | None:intergenic | 45.0% | |
| ATCATAGGGACTGATACAGG+AGG | + | chr1_4:46532282-46532301 | Msa0165770:intron | 45.0% | |
| TTGGAGATTCTGCCATGAGA+AGG | - | chr1_4:46532354-46532373 | None:intergenic | 45.0% | |
| CATGGCAGAATCTCCAAATC+AGG | + | chr1_4:46532357-46532376 | Msa0165770:CDS | 45.0% | |
| GGGTGAATTCGTTGTTCTAG+AGG | + | chr1_4:46532459-46532478 | Msa0165770:intron | 45.0% | |
| ! | GTAGGTCTAATGGGTGTGAT+GGG | - | chr1_4:46532789-46532808 | None:intergenic | 45.0% |
| ! | AGTAGGTCTAATGGGTGTGA+TGG | - | chr1_4:46532790-46532809 | None:intergenic | 45.0% |
| GCTGTATACACTACTGCAGA+TGG | + | chr1_4:46533051-46533070 | Msa0165770:intron | 45.0% | |
| ATACGTGAAGGCCAAAGTTC+CGG | + | chr1_4:46533101-46533120 | Msa0165770:CDS | 45.0% | |
| ATGCTTCAAACCCGGAACTT+TGG | - | chr1_4:46533115-46533134 | None:intergenic | 45.0% | |
| !! | ATACCTCTGAAGCAATCGCA+TGG | - | chr1_4:46533202-46533221 | None:intergenic | 45.0% |
| CATCTTTGCTGAAGTAGGGA+TGG | - | chr1_4:46533236-46533255 | None:intergenic | 45.0% | |
| ! | CTGCATTGATCCATTCACCA+TGG | - | chr1_4:46533350-46533369 | None:intergenic | 45.0% |
| GTCAAACCTGATTTAGGTCC+GGG | + | chr1_4:46533369-46533388 | Msa0165770:CDS | 45.0% | |
| GAAATTCCCGGACCTAAATC+AGG | - | chr1_4:46533378-46533397 | None:intergenic | 45.0% | |
| !! | GATACGCGTTCTGAAATTCC+CGG | - | chr1_4:46533390-46533409 | None:intergenic | 45.0% |
| ATTCTCCTCTGTTGTGCGTA+GGG | - | chr1_4:46533418-46533437 | None:intergenic | 45.0% | |
| TATTCTCCTCTGTTGTGCGT+AGG | - | chr1_4:46533419-46533438 | None:intergenic | 45.0% | |
| GAATTCATCTGCACCATTCC+TGG | - | chr1_4:46534258-46534277 | None:intergenic | 45.0% | |
| ! | GCCCGTGTGATTGAGTTTTG+AGG | - | chr1_4:46530945-46530964 | None:intergenic | 50.0% |
| !!! | GTGCCTCTTCCCTTGTTTTG+TGG | - | chr1_4:46531024-46531043 | None:intergenic | 50.0% |
| GGCACTGCTGTTATCATCTG+TGG | + | chr1_4:46531039-46531058 | Msa0165770:five_prime_UTR | 50.0% | |
| CTGCTGTTATCATCTGTGGG+TGG | + | chr1_4:46531043-46531062 | Msa0165770:five_prime_UTR | 50.0% | |
| TCAGGGGAAGAAGAAGTTGG+TGG | - | chr1_4:46531139-46531158 | None:intergenic | 50.0% | |
| CTGGATTCGGGAATCCTGAT+TGG | + | chr1_4:46531364-46531383 | Msa0165770:CDS | 50.0% | |
| TGATGAGTCCTTGCCCAATC+AGG | - | chr1_4:46531381-46531400 | None:intergenic | 50.0% | |
| TGATTGGGCAAGGACTCATC+AGG | + | chr1_4:46531380-46531399 | Msa0165770:CDS | 50.0% | |
| CTCAGGACAGCCAAAACTGT+TGG | - | chr1_4:46531423-46531442 | None:intergenic | 50.0% | |
| GTACCTGGAGGATCTTCTAG+TGG | + | chr1_4:46532084-46532103 | Msa0165770:CDS | 50.0% | |
| ! | TGCAGTTGGTGCAAAGCTTG+TGG | + | chr1_4:46532116-46532135 | Msa0165770:CDS | 50.0% |
| TAGGATACTCTTCTGCTCCG+TGG | + | chr1_4:46532232-46532251 | Msa0165770:intron | 50.0% | |
| AGGATACTCTTCTGCTCCGT+GGG | + | chr1_4:46532233-46532252 | Msa0165770:intron | 50.0% | |
| CAAGGGCTCAACAACTTGTG+AGG | - | chr1_4:46532665-46532684 | None:intergenic | 50.0% | |
| TGGCCTTCACGTATTCACCA+AGG | - | chr1_4:46533095-46533114 | None:intergenic | 50.0% | |
| TACGTGAAGGCCAAAGTTCC+GGG | + | chr1_4:46533102-46533121 | Msa0165770:CDS | 50.0% | |
| ! | CTTGAAAGTGCAGCCAGTGA+TGG | - | chr1_4:46533177-46533196 | None:intergenic | 50.0% |
| TGTAGTTTAGGTGGAGGACC+TGG | - | chr1_4:46534013-46534032 | None:intergenic | 50.0% | |
| TCTCCCTGCATCAGTTTCTC+TGG | + | chr1_4:46534229-46534248 | Msa0165770:CDS | 50.0% | |
| CCACCAGAGAAACTGATGCA+GGG | - | chr1_4:46534235-46534254 | None:intergenic | 50.0% | |
| TCGGGAATCCTGATTGGGCA+AGG | + | chr1_4:46531370-46531389 | Msa0165770:CDS | 55.0% | |
| !!! | GTTTTGGCTGTCCTGAGTGC+AGG | + | chr1_4:46531426-46531445 | Msa0165770:CDS | 55.0% |
| !! | AGTGCAGGTGCCACTTGTGT+TGG | + | chr1_4:46531441-46531460 | Msa0165770:CDS | 55.0% |
| GGTACTCGGTCTTCTGCACA+AGG | - | chr1_4:46532069-46532088 | None:intergenic | 55.0% | |
| TGTGCAGAAGACCGAGTACC+TGG | + | chr1_4:46532069-46532088 | Msa0165770:CDS | 55.0% | |
| GAGCCACTAGAAGATCCTCC+AGG | - | chr1_4:46532090-46532109 | None:intergenic | 55.0% | |
| ! | AGTGGCTCTGCTGTTGCAGT+TGG | + | chr1_4:46532102-46532121 | Msa0165770:CDS | 55.0% |
| ! | GGTCTAATGGGTGTGATGGG+TGG | - | chr1_4:46532786-46532805 | None:intergenic | 55.0% |
| GTGCCATGCGATTGCTTCAG+AGG | + | chr1_4:46533196-46533215 | Msa0165770:CDS | 55.0% | |
| AGATGCCCTACGCACAACAG+AGG | + | chr1_4:46533410-46533429 | Msa0165770:CDS | 55.0% | |
| CTCATGATCCCCACAGTTCC+AGG | + | chr1_4:46533992-46534011 | Msa0165770:CDS | 55.0% | |
| CCCTGCATCAGTTTCTCTGG+TGG | + | chr1_4:46534232-46534251 | Msa0165770:CDS | 55.0% | |
| GCCACCAGAGAAACTGATGC+AGG | - | chr1_4:46534236-46534255 | None:intergenic | 55.0% | |
| CATCAGTTTCTCTGGTGGCC+AGG | + | chr1_4:46534237-46534256 | Msa0165770:CDS | 55.0% | |
| GTTTCTCTGGTGGCCAGGAA+TGG | + | chr1_4:46534242-46534261 | Msa0165770:CDS | 55.0% | |
| CACAAGTGGCACCTGCACTC+AGG | - | chr1_4:46531440-46531459 | None:intergenic | 60.0% | |
| GCAGAAGACCGAGTACCTGG+AGG | + | chr1_4:46532072-46532091 | Msa0165770:CDS | 60.0% | |
| GTGGAGGACCTGGAACTGTG+GGG | - | chr1_4:46534003-46534022 | None:intergenic | 60.0% | |
| GGTGGAGGACCTGGAACTGT+GGG | - | chr1_4:46534004-46534023 | None:intergenic | 60.0% | |
| AGGTGGAGGACCTGGAACTG+TGG | - | chr1_4:46534005-46534024 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 46530867 | 46534584 | 46530867 | ID=Msa0165770;Name=Msa0165770 |
| chr1_4 | mRNA | 46530867 | 46534584 | 46530867 | ID=Msa0165770-mRNA-1;Parent=Msa0165770;Name=Msa0165770-mRNA-1;_AED=0.30;_eAED=0.30;_QI=221|1|1|1|1|1|9|262|423 |
| chr1_4 | exon | 46530867 | 46531197 | 46530867 | ID=Msa0165770-mRNA-1:exon:13369;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46531341 | 46531493 | 46531341 | ID=Msa0165770-mRNA-1:exon:13370;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46532026 | 46532150 | 46532026 | ID=Msa0165770-mRNA-1:exon:13371;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46532289 | 46532414 | 46532289 | ID=Msa0165770-mRNA-1:exon:13372;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46532724 | 46532906 | 46532724 | ID=Msa0165770-mRNA-1:exon:13373;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46533070 | 46533217 | 46533070 | ID=Msa0165770-mRNA-1:exon:13374;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46533329 | 46533497 | 46533329 | ID=Msa0165770-mRNA-1:exon:13375;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46533980 | 46534114 | 46533980 | ID=Msa0165770-mRNA-1:exon:13376;Parent=Msa0165770-mRNA-1 |
| chr1_4 | exon | 46534200 | 46534584 | 46534200 | ID=Msa0165770-mRNA-1:exon:13377;Parent=Msa0165770-mRNA-1 |
| chr1_4 | five_prime_UTR | 46530867 | 46531087 | 46530867 | ID=Msa0165770-mRNA-1:five_prime_utr;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46531088 | 46531197 | 46531088 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46531341 | 46531493 | 46531341 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46532026 | 46532150 | 46532026 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46532289 | 46532414 | 46532289 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46532724 | 46532906 | 46532724 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46533070 | 46533217 | 46533070 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46533329 | 46533497 | 46533329 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46533980 | 46534114 | 46533980 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | CDS | 46534200 | 46534322 | 46534200 | ID=Msa0165770-mRNA-1:cds;Parent=Msa0165770-mRNA-1 |
| chr1_4 | three_prime_UTR | 46534323 | 46534584 | 46534323 | ID=Msa0165770-mRNA-1:three_prime_utr;Parent=Msa0165770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
