Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166770 | XP_013468260.1 | 99.723 | 361 | 0 | 1 | 1 | 360 | 1 | 361 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166770 | sp|Q0JHZ2|C3H11_ORYSJ | 71.978 | 364 | 92 | 5 | 1 | 357 | 1 | 361 | 4.35e-173 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166770 | A0A072VKH3 | 99.723 | 361 | 0 | 1 | 1 | 360 | 1 | 361 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0166770 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116580 | Msa0166770 | 0.928754 | 1.845619e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166770 | MtrunA17_Chr1g0181781 | 99.723 | 361 | 0 | 1 | 1 | 360 | 1 | 361 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166770 | AT2G20280.1 | 72.776 | 371 | 88 | 6 | 1 | 360 | 1 | 369 | 3.71e-160 | 453 |
Find 99 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTCCTGGCTCCTTAATT+TGG | 0.131430 | 1_4:+48349946 | None:intergenic |
| TCGAGAAGCTTACGGAAATT+TGG | 0.211210 | 1_4:+48354602 | None:intergenic |
| TTCAACAACCTTCTGCTTCT+TGG | 0.227516 | 1_4:+48354373 | None:intergenic |
| ATCTTGTTTGGGATCGGTTC+TGG | 0.237299 | 1_4:+48354268 | None:intergenic |
| TAATACCTTTGCATCTTGTT+TGG | 0.261505 | 1_4:+48354256 | None:intergenic |
| TGCCTGTTGGGCAGCCAAAC+TGG | 0.270781 | 1_4:+48352419 | None:intergenic |
| GCCAGTGTTTGGGTTAGATT+AGG | 0.279832 | 1_4:+48354564 | None:intergenic |
| CTTAATTTGGATTGATGTCT+TGG | 0.282985 | 1_4:+48349959 | None:intergenic |
| ACCACCTGTTGCTGAGGTGC+TGG | 0.284681 | 1_4:+48350067 | None:intergenic |
| CAAGACATCAATCCAAATTA+AGG | 0.287429 | 1_4:-48349958 | Msa0166770:CDS |
| CATCAGGTTCTGGTTCTCTT+TGG | 0.299666 | 1_4:+48352102 | None:intergenic |
| TGTTCAGTTTCATCAGGTTC+TGG | 0.302433 | 1_4:+48352092 | None:intergenic |
| CCAGTGTTTGGGTTAGATTA+GGG | 0.305397 | 1_4:+48354565 | None:intergenic |
| GGAAGCAATATGGTTGGTTT+TGG | 0.321181 | 1_4:-48352743 | Msa0166770:CDS |
| CCAAATGAAGGCTTTGTTAG+AGG | 0.323021 | 1_4:-48352652 | Msa0166770:CDS |
| CCTCTAACAAAGCCTTCATT+TGG | 0.329335 | 1_4:+48352652 | None:intergenic |
| AATACCTTTGCATCTTGTTT+GGG | 0.345954 | 1_4:+48354257 | None:intergenic |
| TCTGTAGTTCGGTCCCTCAT+TGG | 0.362152 | 1_4:-48349725 | Msa0166770:three_prime_UTR |
| GTGTACCTGGTGCCAGTGTT+TGG | 0.365398 | 1_4:+48354553 | None:intergenic |
| ATACAATTCTTACCACCATT+TGG | 0.368919 | 1_4:+48352714 | None:intergenic |
| GTGTGATTGAAGGGGTATAT+CGG | 0.370307 | 1_4:-48354630 | Msa0166770:five_prime_UTR |
| TGCCAGTTTGGCTGCCCAAC+AGG | 0.370933 | 1_4:-48352421 | Msa0166770:CDS |
| TAGAACAACTCAGTAGTTAT+AGG | 0.372615 | 1_4:+48352477 | None:intergenic |
| CTTAGCCCTCTCTGCCTGTT+GGG | 0.378571 | 1_4:+48352407 | None:intergenic |
| TGATTACCAGGTGGGACTTT+AGG | 0.387712 | 1_4:+48353575 | None:intergenic |
| ACTGGGAGTGCTGCTAATAA+TGG | 0.388945 | 1_4:-48350092 | Msa0166770:CDS |
| GTCCAATGCTAGCTTGTTTG+TGG | 0.394012 | 1_4:-48352150 | Msa0166770:CDS |
| TGACGACGACGATGATGAAT+TGG | 0.394183 | 1_4:-48350018 | Msa0166770:CDS |
| TGTACCTGGTGCCAGTGTTT+GGG | 0.397179 | 1_4:+48354554 | None:intergenic |
| CAGGATTAAGCTTCAGCTCC+TGG | 0.399587 | 1_4:+48349933 | None:intergenic |
| GGATCCATCTTCAGGGGACT+GGG | 0.402542 | 1_4:-48350109 | Msa0166770:intron |
| TCTTGTTTGGGATCGGTTCT+GGG | 0.408315 | 1_4:+48354269 | None:intergenic |
| CTCTAACAAAGCCTTCATTT+GGG | 0.418201 | 1_4:+48352653 | None:intergenic |
| TCTTAGCCCTCTCTGCCTGT+TGG | 0.422157 | 1_4:+48352406 | None:intergenic |
| TTTCTGGGTGTGTGTGTACC+TGG | 0.423725 | 1_4:+48354540 | None:intergenic |
| GGACGAGAGAGATGCCAGTT+TGG | 0.425678 | 1_4:-48352433 | Msa0166770:CDS |
| GTTGTTGAAGACAAAACTTT+CGG | 0.429860 | 1_4:-48354359 | Msa0166770:CDS |
| ACATTCTGTTCAGTTTCATC+AGG | 0.434153 | 1_4:+48352086 | None:intergenic |
| CCACCTGTTGCTGAGGTGCT+GGG | 0.434200 | 1_4:+48350068 | None:intergenic |
| ATTTGAATGTTCAGAGGAAA+GGG | 0.439404 | 1_4:-48353195 | Msa0166770:CDS |
| GGTCCCAGCACCTCAGCAAC+AGG | 0.448016 | 1_4:-48350071 | Msa0166770:CDS |
| CTTTGCATCTTGTTTGGGAT+CGG | 0.453264 | 1_4:+48354262 | None:intergenic |
| TGGATCCATCTTCAGGGGAC+TGG | 0.464578 | 1_4:-48350110 | Msa0166770:intron |
| ATCGTCGTCGTCAATGTCAT+CGG | 0.466901 | 1_4:+48350028 | None:intergenic |
| CAAGGTTGAGAATACTTCTC+AGG | 0.468658 | 1_4:+48349914 | None:intergenic |
| CGACGATGATGAATTGGACT+TGG | 0.483319 | 1_4:-48350012 | Msa0166770:CDS |
| GGGATCGGTTCTGGGTTGAA+CGG | 0.484565 | 1_4:+48354277 | None:intergenic |
| CTACTGAGTTGTTCTATCAA+TGG | 0.484577 | 1_4:-48352470 | Msa0166770:CDS |
| ACTGGCATTCCTTGCATTCG+AGG | 0.486440 | 1_4:-48349841 | Msa0166770:three_prime_UTR |
| AGTGATTTCATTATCATCAA+AGG | 0.492899 | 1_4:+48349802 | None:intergenic |
| CTTGGACGAGTTGAATGAAC+TGG | 0.496577 | 1_4:-48349994 | Msa0166770:CDS |
| TGAGGAGGAGATTGAAAAGC+AGG | 0.498835 | 1_4:-48352607 | Msa0166770:intron |
| TAAAGTGGGTCAGTGTGCTA+AGG | 0.499067 | 1_4:-48353242 | Msa0166770:CDS |
| TGTGATTGAAGGGGTATATC+GGG | 0.499449 | 1_4:-48354629 | Msa0166770:five_prime_UTR |
| GGGCTAAGAATGACCGTATG+AGG | 0.510546 | 1_4:-48352392 | Msa0166770:intron |
| TTGAATTGAATCAATTACTA+CGG | 0.513438 | 1_4:-48354472 | Msa0166770:five_prime_UTR |
| GCGGTAGAGAGGAAGCAATA+TGG | 0.516289 | 1_4:-48352753 | Msa0166770:CDS |
| AAAGTGGGTCAGTGTGCTAA+GGG | 0.517849 | 1_4:-48353241 | Msa0166770:CDS |
| AACTCGCATAATACGGACTT+GGG | 0.519493 | 1_4:+48353268 | None:intergenic |
| TGTTCTAAAATCCCAAATGA+AGG | 0.519608 | 1_4:-48352664 | Msa0166770:CDS |
| ATAAATCATACAATATCTGT+TGG | 0.520423 | 1_4:+48352972 | None:intergenic |
| TCGTCGTCGTCAATGTCATC+GGG | 0.524494 | 1_4:+48350029 | None:intergenic |
| GGCTGCCCAACAGGCAGAGA+GGG | 0.524561 | 1_4:-48352412 | Msa0166770:CDS |
| GATTTGAATGTTCAGAGGAA+AGG | 0.525852 | 1_4:-48353196 | Msa0166770:CDS |
| TCAAGAGACATTGGAGAAAG+TGG | 0.526557 | 1_4:-48353030 | Msa0166770:CDS |
| CTCATGATTTGAATGTTCAG+AGG | 0.535502 | 1_4:-48353201 | Msa0166770:CDS |
| TCAATCCAAATTAAGGAGCC+AGG | 0.536632 | 1_4:-48349951 | Msa0166770:CDS |
| TATCATATGCTTCTAGCCAC+TGG | 0.539195 | 1_4:-48349859 | Msa0166770:three_prime_UTR |
| GATAATGAACATACCTCATA+CGG | 0.540126 | 1_4:+48352379 | None:intergenic |
| AAACTCGCATAATACGGACT+TGG | 0.543376 | 1_4:+48353267 | None:intergenic |
| TATAGACATGCACTTCCACC+TGG | 0.544388 | 1_4:-48352690 | Msa0166770:CDS |
| GCTTCGGAGGCATCTCGTAT+CGG | 0.548418 | 1_4:+48354414 | None:intergenic |
| ATCCACAAACAAGCTAGCAT+TGG | 0.551369 | 1_4:+48352148 | None:intergenic |
| GGAAGAGAAGGCAAAAGAGA+AGG | 0.553385 | 1_4:-48353633 | Msa0166770:CDS |
| ATCTGATAAAATGCCAATTG+AGG | 0.553676 | 1_4:-48352625 | Msa0166770:CDS |
| TGTTAGATACAATGGAAGAG+TGG | 0.555431 | 1_4:-48353055 | Msa0166770:intron |
| GTTAGATACAATGGAAGAGT+GGG | 0.563771 | 1_4:-48353054 | Msa0166770:intron |
| GTGACGTGCAGTGTGATTGA+AGG | 0.567133 | 1_4:-48354640 | None:intergenic |
| TCTTATGTTGTTAGATACAA+TGG | 0.573310 | 1_4:-48353063 | Msa0166770:intron |
| GTCTGCACCACCTGTTGCTG+AGG | 0.573436 | 1_4:+48350061 | None:intergenic |
| AGAGTGGGATCAAGAGACAT+TGG | 0.578286 | 1_4:-48353039 | Msa0166770:CDS |
| CCCTAATCTAACCCAAACAC+TGG | 0.579001 | 1_4:-48354565 | Msa0166770:five_prime_UTR |
| AGCATTAAACTATCACATCA+AGG | 0.579080 | 1_4:+48349896 | None:intergenic |
| ATCGGTTCTGGGTTGAACGG+AGG | 0.580401 | 1_4:+48354280 | None:intergenic |
| CTAACCCAAACACTGGCACC+AGG | 0.591263 | 1_4:-48354558 | Msa0166770:five_prime_UTR |
| TAGAGAGGAAGCAATATGGT+TGG | 0.597838 | 1_4:-48352749 | Msa0166770:CDS |
| CGATCCCAAACAAGATGCAA+AGG | 0.603297 | 1_4:-48354261 | Msa0166770:intron |
| TGATAAAATGCCAATTGAGG+AGG | 0.604474 | 1_4:-48352622 | Msa0166770:CDS |
| TGACGTGCAGTGTGATTGAA+GGG | 0.605647 | 1_4:-48354639 | None:intergenic |
| AATGAAAATGATTACCAGGT+GGG | 0.607119 | 1_4:+48353567 | None:intergenic |
| TTTGAATGTTCAGAGGAAAG+GGG | 0.609926 | 1_4:-48353194 | Msa0166770:CDS |
| CCCAGCACCTCAGCAACAGG+TGG | 0.619651 | 1_4:-48350068 | Msa0166770:CDS |
| TGATGTAGCCAAGAAGCAGA+AGG | 0.627538 | 1_4:-48354381 | Msa0166770:CDS |
| AGAGACATTGGAGAAAGTGG+TGG | 0.637831 | 1_4:-48353027 | Msa0166770:CDS |
| TACAGTGATAAGCGTGACGA+TGG | 0.639061 | 1_4:-48353157 | Msa0166770:intron |
| TGGCTGCCCAACAGGCAGAG+AGG | 0.639365 | 1_4:-48352413 | Msa0166770:CDS |
| AGTCAGCCTAAAGTCCCACC+TGG | 0.657066 | 1_4:-48353581 | Msa0166770:intron |
| TCGAATGCAAGGAATGCCAG+TGG | 0.699446 | 1_4:+48349843 | None:intergenic |
| GACGTGCAGTGTGATTGAAG+GGG | 0.780978 | 1_4:-48354638 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAGAAAAAAATAGATTT+TGG | - | chr1_4:48352666-48352685 | Msa0166770:CDS | 10.0% |
| !!! | TAATATATCTGAATTTTGTT+AGG | - | chr1_4:48351054-48351073 | Msa0166770:intron | 15.0% |
| !!! | TTTTTAAAGTGTATTACAAA+TGG | - | chr1_4:48352095-48352114 | Msa0166770:CDS | 15.0% |
| !!! | AAATGATTTTTTTAGCAAAA+TGG | - | chr1_4:48352726-48352745 | Msa0166770:CDS | 15.0% |
| !!! | TTTTTTTTACTCATAACAAA+TGG | - | chr1_4:48352990-48353009 | Msa0166770:CDS | 15.0% |
| !! | AAAAAAAAAAGAAAGAGAAA+AGG | + | chr1_4:48354017-48354036 | None:intergenic | 15.0% |
| !! | ATTTAGGAAAACAAAATATA+TGG | + | chr1_4:48354220-48354239 | None:intergenic | 15.0% |
| !! | TTGAATTGAATCAATTACTA+CGG | - | chr1_4:48349880-48349899 | Msa0166770:three_prime_UTR | 20.0% |
| !! | TAATCTACGATAAAAGAATA+TGG | + | chr1_4:48350147-48350166 | None:intergenic | 20.0% |
| !! | TTTATCGTAGATTATTCAAA+TGG | - | chr1_4:48350153-48350172 | Msa0166770:intron | 20.0% |
| !! | TTATCGTAGATTATTCAAAT+GGG | - | chr1_4:48350154-48350173 | Msa0166770:intron | 20.0% |
| !!! | CATTATATAGATTTTTCAAC+CGG | - | chr1_4:48350390-48350409 | Msa0166770:intron | 20.0% |
| !!! | ATTATATAGATTTTTCAACC+GGG | - | chr1_4:48350391-48350410 | Msa0166770:intron | 20.0% |
| !!! | TATTTTTTTCTGTAGTTCAA+TGG | - | chr1_4:48351003-48351022 | Msa0166770:intron | 20.0% |
| !!! | ATTTTTTTCTGTAGTTCAAT+GGG | - | chr1_4:48351004-48351023 | Msa0166770:intron | 20.0% |
| !! | TTTAAAAAACTCGCATAATA+CGG | + | chr1_4:48351094-48351113 | None:intergenic | 20.0% |
| !! | AAAACCAAAAAGTAAGAAAA+AGG | + | chr1_4:48351267-48351286 | None:intergenic | 20.0% |
| !! | ATAAATCATACAATATCTGT+TGG | + | chr1_4:48351383-48351402 | None:intergenic | 20.0% |
| !! | GTATGATTTATTAGATTTGT+TGG | - | chr1_4:48351392-48351411 | Msa0166770:intron | 20.0% |
| !!! | TATCCACTTTCATTTTTTTA+TGG | - | chr1_4:48351443-48351462 | Msa0166770:intron | 20.0% |
| !! | TTTATTCTTGCTTATTCAAA+TGG | - | chr1_4:48351521-48351540 | Msa0166770:intron | 20.0% |
| !! | TTCTAACATATTATGTAACA+TGG | - | chr1_4:48351823-48351842 | Msa0166770:intron | 20.0% |
| !! | AAATTTAACAGTTGCAAATT+TGG | - | chr1_4:48352390-48352409 | Msa0166770:intron | 20.0% |
| !!! | TTTCTAGTTTTATGCAATTA+TGG | - | chr1_4:48352483-48352502 | Msa0166770:CDS | 20.0% |
| !!! | TTCTAGTTTTATGCAATTAT+GGG | - | chr1_4:48352484-48352503 | Msa0166770:CDS | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | + | chr1_4:48352663-48352682 | None:intergenic | 20.0% |
| !! | AAAAAAAATCCAAAACAAAC+AGG | - | chr1_4:48352822-48352841 | Msa0166770:intron | 20.0% |
| !!! | GTAAAAAAAACATTTGCTAT+GGG | + | chr1_4:48352980-48352999 | None:intergenic | 20.0% |
| !!! | AGTAAAAAAAACATTTGCTA+TGG | + | chr1_4:48352981-48353000 | None:intergenic | 20.0% |
| !!! | CTTTTTGCATATAAAAAGAA+AGG | + | chr1_4:48353529-48353548 | None:intergenic | 20.0% |
| !! | AATAAAAGAGGAAAATGATT+TGG | + | chr1_4:48353902-48353921 | None:intergenic | 20.0% |
| !! | TTTGGGAGAAAAAATTTAAA+GGG | + | chr1_4:48353979-48353998 | None:intergenic | 20.0% |
| !!! | AGTTTTTGAAATTCAATTGA+AGG | + | chr1_4:48354093-48354112 | None:intergenic | 20.0% |
| !!! | TATTTTGTTTTCCTAAATGT+TGG | - | chr1_4:48354222-48354241 | Msa0166770:intron | 20.0% |
| ! | TAATAAGAGCCTTTATTGAT+TGG | + | chr1_4:48350364-48350383 | None:intergenic | 25.0% |
| ! | CCAATAAAACATAACAGATT+AGG | + | chr1_4:48350682-48350701 | None:intergenic | 25.0% |
| !! | CCTAATCTGTTATGTTTTAT+TGG | - | chr1_4:48350679-48350698 | Msa0166770:intron | 25.0% |
| !! | TTATTGGTAACAGAAAAAGA+AGG | - | chr1_4:48350695-48350714 | Msa0166770:intron | 25.0% |
| ! | TAACAATGAAAATGATTACC+AGG | + | chr1_4:48350792-48350811 | None:intergenic | 25.0% |
| ! | TTTATATTATTCAGTGTTGC+TGG | - | chr1_4:48351027-48351046 | Msa0166770:intron | 25.0% |
| !!! | ATTATGCGAGTTTTTTAAAG+TGG | - | chr1_4:48351095-48351114 | Msa0166770:intron | 25.0% |
| !!! | TTATGCGAGTTTTTTAAAGT+GGG | - | chr1_4:48351096-48351115 | Msa0166770:intron | 25.0% |
| !!! | CTTTCCTTTTTCTTACTTTT+TGG | - | chr1_4:48351260-48351279 | Msa0166770:intron | 25.0% |
| ! | TCTTATGTTGTTAGATACAA+TGG | - | chr1_4:48351289-48351308 | Msa0166770:intron | 25.0% |
| ! | TAGCCATAAAAAAATGAAAG+TGG | + | chr1_4:48351449-48351468 | None:intergenic | 25.0% |
| !!! | ATTTTTTTATGGCTAATTCG+AGG | - | chr1_4:48351454-48351473 | Msa0166770:intron | 25.0% |
| !! | AAAAGTACATAAACAACGTA+CGG | + | chr1_4:48351556-48351575 | None:intergenic | 25.0% |
| !! | TACGTTGTTTATGTACTTTT+AGG | - | chr1_4:48351556-48351575 | Msa0166770:intron | 25.0% |
| ! | TCAATGGAAGAAGAAAAAAA+TGG | - | chr1_4:48351898-48351917 | Msa0166770:intron | 25.0% |
| ! | GAAGATAATACAACATGATT+AGG | + | chr1_4:48352154-48352173 | None:intergenic | 25.0% |
| ! | TATTATCTTCTTAAATGCAG+TGG | - | chr1_4:48352164-48352183 | Msa0166770:CDS | 25.0% |
| !!! | TAATTTTAATGGCTTTTCCA+TGG | - | chr1_4:48352314-48352333 | Msa0166770:intron | 25.0% |
| ! | TGGAAAATTGGAAAATTTGA+AGG | - | chr1_4:48352410-48352429 | Msa0166770:CDS | 25.0% |
| ! | TAACAAAAAAATGGCAGTTA+TGG | + | chr1_4:48352436-48352455 | None:intergenic | 25.0% |
| ! | ACAGCATCATAACAAAAAAA+TGG | + | chr1_4:48352445-48352464 | None:intergenic | 25.0% |
| ! | AACCAAAAAGCAAATTTGAA+GGG | + | chr1_4:48352857-48352876 | None:intergenic | 25.0% |
| !!! | AAATTTGCTTTTTGGTTCAT+TGG | - | chr1_4:48352860-48352879 | Msa0166770:intron | 25.0% |
| ! | ACACAAATTCATAAAACAAC+TGG | + | chr1_4:48353138-48353157 | None:intergenic | 25.0% |
| ! | TGCAAAAGGACTTATATTTA+GGG | + | chr1_4:48353338-48353357 | None:intergenic | 25.0% |
| ! | TTGCAAAAGGACTTATATTT+AGG | + | chr1_4:48353339-48353358 | None:intergenic | 25.0% |
| !! | GTATTGATAAAGGATGTATT+TGG | + | chr1_4:48353390-48353409 | None:intergenic | 25.0% |
| !!! | AATTGGTAGAGTATTGATAA+AGG | + | chr1_4:48353400-48353419 | None:intergenic | 25.0% |
| ! | GCAAATTATTCTAATAGACA+TGG | - | chr1_4:48353636-48353655 | Msa0166770:CDS | 25.0% |
| !! | ACACATCTTTAGATTTTGTT+TGG | - | chr1_4:48353735-48353754 | Msa0166770:intron | 25.0% |
| !!! | CACATCTTTAGATTTTGTTT+GGG | - | chr1_4:48353736-48353755 | Msa0166770:intron | 25.0% |
| !!! | TTTTTTGAACTCCTTCATAT+GGG | + | chr1_4:48353840-48353859 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAACTCCTTCATA+TGG | + | chr1_4:48353841-48353860 | None:intergenic | 25.0% |
| ! | AGGAGTTCAAAAAATGTATT+AGG | - | chr1_4:48353846-48353865 | Msa0166770:intron | 25.0% |
| ! | GGAGTTCAAAAAATGTATTA+GGG | - | chr1_4:48353847-48353866 | Msa0166770:intron | 25.0% |
| ! | GAGTTCAAAAAATGTATTAG+GGG | - | chr1_4:48353848-48353867 | Msa0166770:intron | 25.0% |
| ! | GTTTGGGAGAAAAAATTTAA+AGG | + | chr1_4:48353980-48353999 | None:intergenic | 25.0% |
| !!! | AAATTTTTTCTCCCAAACAA+AGG | - | chr1_4:48353982-48354001 | Msa0166770:intron | 25.0% |
| !! | TTCAATTGAAGGATTTGTTT+GGG | + | chr1_4:48354082-48354101 | None:intergenic | 25.0% |
| !! | ATTCAATTGAAGGATTTGTT+TGG | + | chr1_4:48354083-48354102 | None:intergenic | 25.0% |
| ! | CAAAAACTAGAAAGCAATAT+AGG | - | chr1_4:48354105-48354124 | Msa0166770:intron | 25.0% |
| ! | AGTGATTTCATTATCATCAA+AGG | + | chr1_4:48354553-48354572 | None:intergenic | 25.0% |
| GTTGTTGAAGACAAAACTTT+CGG | - | chr1_4:48349993-48350012 | Msa0166770:CDS | 30.0% | |
| ! | AATACCTTTGCATCTTGTTT+GGG | + | chr1_4:48350098-48350117 | None:intergenic | 30.0% |
| TAATACCTTTGCATCTTGTT+TGG | + | chr1_4:48350099-48350118 | None:intergenic | 30.0% | |
| TCGAATAAGCCAATCAATAA+AGG | - | chr1_4:48350352-48350371 | Msa0166770:intron | 30.0% | |
| AATGAAAATGATTACCAGGT+GGG | + | chr1_4:48350788-48350807 | None:intergenic | 30.0% | |
| GTTTAATTCTGATACACTGT+CGG | - | chr1_4:48350827-48350846 | Msa0166770:intron | 30.0% | |
| ATTTGAATGTTCAGAGGAAA+GGG | - | chr1_4:48351157-48351176 | Msa0166770:intron | 30.0% | |
| ! | TTAGGTATGCAAACACTTTT+TGG | - | chr1_4:48351574-48351593 | Msa0166770:intron | 30.0% |
| ATACAATTCTTACCACCATT+TGG | + | chr1_4:48351641-48351660 | None:intergenic | 30.0% | |
| !! | TGTTCTAAAATCCCAAATGA+AGG | - | chr1_4:48351688-48351707 | Msa0166770:intron | 30.0% |
| ATCTGATAAAATGCCAATTG+AGG | - | chr1_4:48351727-48351746 | Msa0166770:intron | 30.0% | |
| TAGAACAACTCAGTAGTTAT+AGG | + | chr1_4:48351878-48351897 | None:intergenic | 30.0% | |
| GATAATGAACATACCTCATA+CGG | + | chr1_4:48351976-48351995 | None:intergenic | 30.0% | |
| ! | TTTTCCTCGATTAAAAAGGA+GGG | + | chr1_4:48352038-48352057 | None:intergenic | 30.0% |
| ! | TCCTTTTTAATCGAGGAAAA+GGG | - | chr1_4:48352038-48352057 | Msa0166770:intron | 30.0% |
| AGGAAAAGGGAAATATTGAA+GGG | - | chr1_4:48352051-48352070 | Msa0166770:intron | 30.0% | |
| ! | GCGTCTCTTTGTAATTTTAA+TGG | - | chr1_4:48352303-48352322 | Msa0166770:intron | 30.0% |
| ! | GCAGATTTTATCTATATCCA+TGG | + | chr1_4:48352334-48352353 | None:intergenic | 30.0% |
| GATAAAATCTGCAATATGAC+TGG | - | chr1_4:48352342-48352361 | Msa0166770:intron | 30.0% | |
| CAGTTGCAAATTTGGAAAAT+TGG | - | chr1_4:48352398-48352417 | Msa0166770:CDS | 30.0% | |
| TTGCATAAAACTAGAAAAGC+AGG | + | chr1_4:48352480-48352499 | None:intergenic | 30.0% | |
| !! | TACCCTTCAAATTTGCTTTT+TGG | - | chr1_4:48352852-48352871 | Msa0166770:intron | 30.0% |
| GAACCAAAAAGCAAATTTGA+AGG | + | chr1_4:48352858-48352877 | None:intergenic | 30.0% | |
| ATTGGATCTTAGTTTAGACA+TGG | - | chr1_4:48352878-48352897 | Msa0166770:intron | 30.0% | |
| TTGGATCTTAGTTTAGACAT+GGG | - | chr1_4:48352879-48352898 | Msa0166770:intron | 30.0% | |
| ! | GTTTGTAACTTTTATGCATG+AGG | - | chr1_4:48352951-48352970 | Msa0166770:intron | 30.0% |
| ! | ACTCATAACAAATGGCTTTT+AGG | - | chr1_4:48352998-48353017 | Msa0166770:CDS | 30.0% |
| TTATAGCTCAAAACATGAGA+AGG | + | chr1_4:48353034-48353053 | None:intergenic | 30.0% | |
| GTAATTAGTGTCTCATCTTT+AGG | - | chr1_4:48353079-48353098 | Msa0166770:intron | 30.0% | |
| ! | CCAAATGAGTCTTATAAGTA+GGG | + | chr1_4:48353302-48353321 | None:intergenic | 30.0% |
| ! | ACCAAATGAGTCTTATAAGT+AGG | + | chr1_4:48353303-48353322 | None:intergenic | 30.0% |
| GCAAAAGGACTTATATTTAG+GGG | + | chr1_4:48353337-48353356 | None:intergenic | 30.0% | |
| TGTGTCTAGAAATTTGCAAA+AGG | + | chr1_4:48353352-48353371 | None:intergenic | 30.0% | |
| AATACTCTACCAATTTGTCT+TGG | - | chr1_4:48353405-48353424 | Msa0166770:intron | 30.0% | |
| ACCAATTTGTCTTGGAAAAT+TGG | - | chr1_4:48353413-48353432 | Msa0166770:intron | 30.0% | |
| ! | TCCAATTTTCCAAGACAAAT+TGG | + | chr1_4:48353417-48353436 | None:intergenic | 30.0% |
| !! | AGAAGTTCACTTAGTTTGTA+AGG | - | chr1_4:48353595-48353614 | Msa0166770:CDS | 30.0% |
| !! | AATAGACATGGAATTTGTTG+TGG | - | chr1_4:48353648-48353667 | Msa0166770:intron | 30.0% |
| TGTGCTTATAAACAAGAACT+AGG | + | chr1_4:48353697-48353716 | None:intergenic | 30.0% | |
| TTCAAAAAATGTATTAGGGG+AGG | - | chr1_4:48353851-48353870 | Msa0166770:intron | 30.0% | |
| GAGAAAAAATTTAAAGGGAG+AGG | + | chr1_4:48353974-48353993 | None:intergenic | 30.0% | |
| ! | CTTAATTTGGATTGATGTCT+TGG | + | chr1_4:48354396-48354415 | None:intergenic | 30.0% |
| CAAGACATCAATCCAAATTA+AGG | - | chr1_4:48354394-48354413 | Msa0166770:CDS | 30.0% | |
| AGCATTAAACTATCACATCA+AGG | + | chr1_4:48354459-48354478 | None:intergenic | 30.0% | |
| !! | TTTTCGATTCGAGAAGCTTA+CGG | + | chr1_4:48349761-48349780 | None:intergenic | 35.0% |
| !! | ACATCAGCTTTTGATTGCTT+CGG | + | chr1_4:48349957-48349976 | None:intergenic | 35.0% |
| ACAAGCTGTTTAACCAAACA+GGG | + | chr1_4:48350193-48350212 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGCTATCT+TGG | - | chr1_4:48350242-48350261 | Msa0166770:intron | 35.0% |
| TTAAGCCGTTTATCCAAACA+GGG | + | chr1_4:48350430-48350449 | None:intergenic | 35.0% | |
| ATTAAGCCGTTTATCCAAAC+AGG | + | chr1_4:48350431-48350450 | None:intergenic | 35.0% | |
| TCATATAAGCCAATCCAGAA+AGG | - | chr1_4:48350654-48350673 | Msa0166770:intron | 35.0% | |
| ! | TTGGTAACAGAAAAAGAAGG+AGG | - | chr1_4:48350698-48350717 | Msa0166770:intron | 35.0% |
| CAATGAAAATGATTACCAGG+TGG | + | chr1_4:48350789-48350808 | None:intergenic | 35.0% | |
| CTCATGATTTGAATGTTCAG+AGG | - | chr1_4:48351151-48351170 | Msa0166770:intron | 35.0% | |
| GATTTGAATGTTCAGAGGAA+AGG | - | chr1_4:48351156-48351175 | Msa0166770:intron | 35.0% | |
| TTTGAATGTTCAGAGGAAAG+GGG | - | chr1_4:48351158-48351177 | Msa0166770:intron | 35.0% | |
| !!! | GTGTTTGCTTCTTGTTGTTT+TGG | - | chr1_4:48351228-48351247 | Msa0166770:intron | 35.0% |
| !!! | TCTTGTTGTTTTGGTTCTGA+TGG | - | chr1_4:48351237-48351256 | Msa0166770:intron | 35.0% |
| TGTTAGATACAATGGAAGAG+TGG | - | chr1_4:48351297-48351316 | Msa0166770:intron | 35.0% | |
| GTTAGATACAATGGAAGAGT+GGG | - | chr1_4:48351298-48351317 | Msa0166770:intron | 35.0% | |
| ! | TCGAGGCTTCTTTTTAATGT+TGG | - | chr1_4:48351471-48351490 | Msa0166770:intron | 35.0% |
| !! | ATGCAAACACTTTTTGGATG+CGG | - | chr1_4:48351580-48351599 | Msa0166770:intron | 35.0% |
| !!! | GATTTTAGAACATATCCAGG+TGG | + | chr1_4:48351680-48351699 | None:intergenic | 35.0% |
| !!! | TGGGATTTTAGAACATATCC+AGG | + | chr1_4:48351683-48351702 | None:intergenic | 35.0% |
| CTCTAACAAAGCCTTCATTT+GGG | + | chr1_4:48351702-48351721 | None:intergenic | 35.0% | |
| TGATAAAATGCCAATTGAGG+AGG | - | chr1_4:48351730-48351749 | Msa0166770:intron | 35.0% | |
| ! | TTTTCAATCTCCTCCTCAAT+TGG | + | chr1_4:48351743-48351762 | None:intergenic | 35.0% |
| AATGACGATGCTTCTTGTAA+GGG | + | chr1_4:48351785-48351804 | None:intergenic | 35.0% | |
| AAATGACGATGCTTCTTGTA+AGG | + | chr1_4:48351786-48351805 | None:intergenic | 35.0% | |
| ! | AGGAGTTGTAGTTTTCACTT+GGG | + | chr1_4:48351858-48351877 | None:intergenic | 35.0% |
| ! | TAGGAGTTGTAGTTTTCACT+TGG | + | chr1_4:48351859-48351878 | None:intergenic | 35.0% |
| CTACTGAGTTGTTCTATCAA+TGG | - | chr1_4:48351882-48351901 | Msa0166770:intron | 35.0% | |
| TTTCCTCGATTAAAAAGGAG+GGG | + | chr1_4:48352037-48352056 | None:intergenic | 35.0% | |
| ! | CTTTTCCTCGATTAAAAAGG+AGG | + | chr1_4:48352039-48352058 | None:intergenic | 35.0% |
| ! | CTCCTTTTTAATCGAGGAAA+AGG | - | chr1_4:48352037-48352056 | Msa0166770:intron | 35.0% |
| ! | TCCCTTTTCCTCGATTAAAA+AGG | + | chr1_4:48352042-48352061 | None:intergenic | 35.0% |
| GAGGAAAAGGGAAATATTGA+AGG | - | chr1_4:48352050-48352069 | Msa0166770:intron | 35.0% | |
| GGAAAAGGGAAATATTGAAG+GGG | - | chr1_4:48352052-48352071 | Msa0166770:intron | 35.0% | |
| ACATTCTGTTCAGTTTCATC+AGG | + | chr1_4:48352269-48352288 | None:intergenic | 35.0% | |
| AATTATGGGTGCGTTTGTTT+CGG | - | chr1_4:48352498-48352517 | Msa0166770:CDS | 35.0% | |
| ! | GCAAATTTGAAGGGTACATA+GGG | + | chr1_4:48352848-48352867 | None:intergenic | 35.0% |
| ! | AGCAAATTTGAAGGGTACAT+AGG | + | chr1_4:48352849-48352868 | None:intergenic | 35.0% |
| TGGATCTTAGTTTAGACATG+GGG | - | chr1_4:48352880-48352899 | Msa0166770:intron | 35.0% | |
| CCATAAATCCCAATTGTTAC+TGG | + | chr1_4:48352918-48352937 | None:intergenic | 35.0% | |
| CCAGTAACAATTGGGATTTA+TGG | - | chr1_4:48352915-48352934 | Msa0166770:intron | 35.0% | |
| ATTGGGATTTATGGTGCAAA+TGG | - | chr1_4:48352924-48352943 | Msa0166770:intron | 35.0% | |
| TTGGGATTTATGGTGCAAAT+GGG | - | chr1_4:48352925-48352944 | Msa0166770:intron | 35.0% | |
| !! | TAACAAATGGCTTTTAGGAG+TGG | - | chr1_4:48353003-48353022 | Msa0166770:CDS | 35.0% |
| ! | TTTTTGCATGCGACAATGTA+TGG | - | chr1_4:48353055-48353074 | Msa0166770:intron | 35.0% |
| AGTGCAAGCTCAAAAGATAT+AGG | + | chr1_4:48353109-48353128 | None:intergenic | 35.0% | |
| TTTGTGTCTGAATTCCTGTT+TGG | - | chr1_4:48353151-48353170 | Msa0166770:intron | 35.0% | |
| ! | TTTTCCAAAGCCATGGTTTT+GGG | + | chr1_4:48353180-48353199 | None:intergenic | 35.0% |
| ! | ATTTTCCAAAGCCATGGTTT+TGG | + | chr1_4:48353181-48353200 | None:intergenic | 35.0% |
| !! | AAAACCATGGCTTTGGAAAA+TGG | - | chr1_4:48353180-48353199 | Msa0166770:CDS | 35.0% |
| ACAAGAGATTGTCCAAAACA+TGG | - | chr1_4:48353204-48353223 | Msa0166770:CDS | 35.0% | |
| ATTGTCCAAAACATGGTTGA+GGG | - | chr1_4:48353211-48353230 | Msa0166770:CDS | 35.0% | |
| !! | CAGCATGTTTGTTTTCTGTT+AGG | + | chr1_4:48353240-48353259 | None:intergenic | 35.0% |
| TGCTGTGTGATTATTGTGTA+TGG | - | chr1_4:48353255-48353274 | Msa0166770:CDS | 35.0% | |
| CCCTACTTATAAGACTCATT+TGG | - | chr1_4:48353299-48353318 | Msa0166770:intron | 35.0% | |
| ! | TGCCAAAGTACCCTATTAAT+AGG | - | chr1_4:48353549-48353568 | Msa0166770:intron | 35.0% |
| ! | GCCAAAGTACCCTATTAATA+GGG | - | chr1_4:48353550-48353569 | Msa0166770:intron | 35.0% |
| ! | TCCCTATTAATAGGGTACTT+TGG | + | chr1_4:48353554-48353573 | None:intergenic | 35.0% |
| AAGTACCCTATTAATAGGGA+TGG | - | chr1_4:48353554-48353573 | Msa0166770:intron | 35.0% | |
| !! | GTTCACTTAGTTTGTAAGGT+AGG | - | chr1_4:48353599-48353618 | Msa0166770:CDS | 35.0% |
| AAGGTAGGTGGTAAGTATAT+TGG | - | chr1_4:48353614-48353633 | Msa0166770:CDS | 35.0% | |
| !! | TTAGATTTTGTTTGGGCGAA+AGG | - | chr1_4:48353743-48353762 | Msa0166770:intron | 35.0% |
| ! | AATGTATTAGGGGAGGATTT+TGG | - | chr1_4:48353858-48353877 | Msa0166770:intron | 35.0% |
| ! | GGAATTTCTCACCTTTGTTT+GGG | + | chr1_4:48353996-48354015 | None:intergenic | 35.0% |
| AGGAATTTCTCACCTTTGTT+TGG | + | chr1_4:48353997-48354016 | None:intergenic | 35.0% | |
| TTTGGGAGTTAGGAAAAAGA+GGG | + | chr1_4:48354065-48354084 | None:intergenic | 35.0% | |
| AATCATTATCCCACTAAGAG+GGG | + | chr1_4:48354155-48354174 | None:intergenic | 35.0% | |
| CAATCATTATCCCACTAAGA+GGG | + | chr1_4:48354156-48354175 | None:intergenic | 35.0% | |
| TGAAGATGGATCCAACATTT+AGG | + | chr1_4:48354236-48354255 | None:intergenic | 35.0% | |
| TAAATGTTGGATCCATCTTC+AGG | - | chr1_4:48354235-48354254 | Msa0166770:intron | 35.0% | |
| AAATGTTGGATCCATCTTCA+GGG | - | chr1_4:48354236-48354255 | Msa0166770:intron | 35.0% | |
| AAAAAACTTCCTCGAATGCA+AGG | + | chr1_4:48354523-48354542 | None:intergenic | 35.0% | |
| ! | CGATTCAGTTTTCTGTAGTT+CGG | - | chr1_4:48354616-48354635 | Msa0166770:five_prime_UTR | 35.0% |
| ! | GTGTGATTGAAGGGGTATAT+CGG | - | chr1_4:48349722-48349741 | Msa0166770:three_prime_UTR | 40.0% |
| ! | TGTGATTGAAGGGGTATATC+GGG | - | chr1_4:48349723-48349742 | Msa0166770:three_prime_UTR | 40.0% |
| TCGAGAAGCTTACGGAAATT+TGG | + | chr1_4:48349753-48349772 | None:intergenic | 40.0% | |
| ! | CCAGTGTTTGGGTTAGATTA+GGG | + | chr1_4:48349790-48349809 | None:intergenic | 40.0% |
| ! | GACGATGTGAGAGATTTTCT+GGG | + | chr1_4:48349830-48349849 | None:intergenic | 40.0% |
| ! | TGACGATGTGAGAGATTTTC+TGG | + | chr1_4:48349831-48349850 | None:intergenic | 40.0% |
| TTCAACAACCTTCTGCTTCT+TGG | + | chr1_4:48349982-48350001 | None:intergenic | 40.0% | |
| ! | CTTTGCATCTTGTTTGGGAT+CGG | + | chr1_4:48350093-48350112 | None:intergenic | 40.0% |
| ! | TTTTCTGCTTATGCCCTGTT+TGG | - | chr1_4:48350177-48350196 | Msa0166770:intron | 40.0% |
| GACAAGCTGTTTAACCAAAC+AGG | + | chr1_4:48350194-48350213 | None:intergenic | 40.0% | |
| ! | GTGCATGTCATTAGCTGTTT+TGG | - | chr1_4:48350584-48350603 | Msa0166770:intron | 40.0% |
| TAACAGATTAGGAGCCTTTC+TGG | + | chr1_4:48350671-48350690 | None:intergenic | 40.0% | |
| GAAAAAGAAGGAGGAAGAGA+AGG | - | chr1_4:48350707-48350726 | Msa0166770:intron | 40.0% | |
| AACTCGCATAATACGGACTT+GGG | + | chr1_4:48351087-48351106 | None:intergenic | 40.0% | |
| AAACTCGCATAATACGGACT+TGG | + | chr1_4:48351088-48351107 | None:intergenic | 40.0% | |
| TCAAGAGACATTGGAGAAAG+TGG | - | chr1_4:48351322-48351341 | Msa0166770:intron | 40.0% | |
| AGTACATAAACAACGTACGG+AGG | + | chr1_4:48351553-48351572 | None:intergenic | 40.0% | |
| TAGAGAGGAAGCAATATGGT+TGG | - | chr1_4:48351603-48351622 | Msa0166770:intron | 40.0% | |
| !!! | GGAAGCAATATGGTTGGTTT+TGG | - | chr1_4:48351609-48351628 | Msa0166770:intron | 40.0% |
| !!! | TGGTTTTGGTCATGTCCAAA+TGG | - | chr1_4:48351623-48351642 | Msa0166770:intron | 40.0% |
| ! | TTTTGGTCATGTCCAAATGG+TGG | - | chr1_4:48351626-48351645 | Msa0166770:intron | 40.0% |
| CCTCTAACAAAGCCTTCATT+TGG | + | chr1_4:48351703-48351722 | None:intergenic | 40.0% | |
| !! | CCAAATGAAGGCTTTGTTAG+AGG | - | chr1_4:48351700-48351719 | Msa0166770:intron | 40.0% |
| ATGACGATGCTTCTTGTAAG+GGG | + | chr1_4:48351784-48351803 | None:intergenic | 40.0% | |
| ATCCACAAACAAGCTAGCAT+TGG | + | chr1_4:48352207-48352226 | None:intergenic | 40.0% | |
| TGTTCAGTTTCATCAGGTTC+TGG | + | chr1_4:48352263-48352282 | None:intergenic | 40.0% | |
| AAATTACAAAGAGACGCGCT+GGG | + | chr1_4:48352300-48352319 | None:intergenic | 40.0% | |
| AAAATTACAAAGAGACGCGC+TGG | + | chr1_4:48352301-48352320 | None:intergenic | 40.0% | |
| ! | TACATAGGGCCTGTTTGTTT+TGG | + | chr1_4:48352834-48352853 | None:intergenic | 40.0% |
| AAATCCCAATTGTTACTGGC+TGG | + | chr1_4:48352914-48352933 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTGGGATTCCAAAC+AGG | + | chr1_4:48353168-48353187 | None:intergenic | 40.0% |
| ! | TGTTTGGAATCCCAAAACCA+TGG | - | chr1_4:48353167-48353186 | Msa0166770:CDS | 40.0% |
| ! | TGTACCATTTTCCAAAGCCA+TGG | + | chr1_4:48353187-48353206 | None:intergenic | 40.0% |
| GATTGTCCAAAACATGGTTG+AGG | - | chr1_4:48353210-48353229 | Msa0166770:CDS | 40.0% | |
| GTCTTATAAGTAGGGACACA+TGG | + | chr1_4:48353294-48353313 | None:intergenic | 40.0% | |
| TACCCTATTAATAGGGATGG+AGG | - | chr1_4:48353557-48353576 | Msa0166770:intron | 40.0% | |
| ACCCTATTAATAGGGATGGA+GGG | - | chr1_4:48353558-48353577 | Msa0166770:intron | 40.0% | |
| TCCCTCCATCCCTATTAATA+GGG | + | chr1_4:48353562-48353581 | None:intergenic | 40.0% | |
| !! | CACTTAGTTTGTAAGGTAGG+TGG | - | chr1_4:48353602-48353621 | Msa0166770:CDS | 40.0% |
| !! | ATTTTGTTTGGGCGAAAGGA+AGG | - | chr1_4:48353747-48353766 | Msa0166770:intron | 40.0% |
| AAGGAAGGAAGGAAAATGGA+AGG | - | chr1_4:48353762-48353781 | Msa0166770:intron | 40.0% | |
| AGGAAGGAAGGAAAATGGAA+GGG | - | chr1_4:48353763-48353782 | Msa0166770:intron | 40.0% | |
| TTGAACTCCTTCATATGGGA+GGG | + | chr1_4:48353836-48353855 | None:intergenic | 40.0% | |
| TTTGAACTCCTTCATATGGG+AGG | + | chr1_4:48353837-48353856 | None:intergenic | 40.0% | |
| ! | TATTAGGGGAGGATTTTGGA+GGG | - | chr1_4:48353862-48353881 | Msa0166770:intron | 40.0% |
| TTGGGAGTTAGGAAAAAGAG+GGG | + | chr1_4:48354064-48354083 | None:intergenic | 40.0% | |
| GTTTGGGAGTTAGGAAAAAG+AGG | + | chr1_4:48354066-48354085 | None:intergenic | 40.0% | |
| ! | GAAGGATTTGTTTGGGAGTT+AGG | + | chr1_4:48354075-48354094 | None:intergenic | 40.0% |
| CCAATCATTATCCCACTAAG+AGG | + | chr1_4:48354157-48354176 | None:intergenic | 40.0% | |
| CCTCTTAGTGGGATAATGAT+TGG | - | chr1_4:48354154-48354173 | Msa0166770:intron | 40.0% | |
| CTTAGTGGGATAATGATTGG+TGG | - | chr1_4:48354157-48354176 | Msa0166770:intron | 40.0% | |
| ! | GGATAATGATTGGTGGTTGT+TGG | - | chr1_4:48354164-48354183 | Msa0166770:intron | 40.0% |
| AATGTTGGATCCATCTTCAG+GGG | - | chr1_4:48354237-48354256 | Msa0166770:intron | 40.0% | |
| TCAATCCAAATTAAGGAGCC+AGG | - | chr1_4:48354401-48354420 | Msa0166770:CDS | 40.0% | |
| CAAGGTTGAGAATACTTCTC+AGG | + | chr1_4:48354441-48354460 | None:intergenic | 40.0% | |
| TATCATATGCTTCTAGCCAC+TGG | - | chr1_4:48354493-48354512 | Msa0166770:five_prime_UTR | 40.0% | |
| CCCTAATCTAACCCAAACAC+TGG | - | chr1_4:48349787-48349806 | Msa0166770:three_prime_UTR | 45.0% | |
| ! | GCCAGTGTTTGGGTTAGATT+AGG | + | chr1_4:48349791-48349810 | None:intergenic | 45.0% |
| !! | TCAGCTTTTGATTGCTTCGG+AGG | + | chr1_4:48349954-48349973 | None:intergenic | 45.0% |
| TGATGTAGCCAAGAAGCAGA+AGG | - | chr1_4:48349971-48349990 | Msa0166770:CDS | 45.0% | |
| ! | TCTTGTTTGGGATCGGTTCT+GGG | + | chr1_4:48350086-48350105 | None:intergenic | 45.0% |
| ! | ATCTTGTTTGGGATCGGTTC+TGG | + | chr1_4:48350087-48350106 | None:intergenic | 45.0% |
| CGATCCCAAACAAGATGCAA+AGG | - | chr1_4:48350091-48350110 | Msa0166770:CDS | 45.0% | |
| GTAGGCCCTGTTTGGATAAA+CGG | - | chr1_4:48350422-48350441 | Msa0166770:intron | 45.0% | |
| GATTAGGAGCCTTTCTGGAT+TGG | + | chr1_4:48350666-48350685 | None:intergenic | 45.0% | |
| GGAAGAGAAGGCAAAAGAGA+AGG | - | chr1_4:48350719-48350738 | Msa0166770:intron | 45.0% | |
| TGATTACCAGGTGGGACTTT+AGG | + | chr1_4:48350780-48350799 | None:intergenic | 45.0% | |
| TAAAGTGGGTCAGTGTGCTA+AGG | - | chr1_4:48351110-48351129 | Msa0166770:intron | 45.0% | |
| AAAGTGGGTCAGTGTGCTAA+GGG | - | chr1_4:48351111-48351130 | Msa0166770:intron | 45.0% | |
| TACAGTGATAAGCGTGACGA+TGG | - | chr1_4:48351195-48351214 | Msa0166770:intron | 45.0% | |
| AGAGTGGGATCAAGAGACAT+TGG | - | chr1_4:48351313-48351332 | Msa0166770:intron | 45.0% | |
| AGAGACATTGGAGAAAGTGG+TGG | - | chr1_4:48351325-48351344 | Msa0166770:intron | 45.0% | |
| ! | ACTTTTTGGATGCGGTAGAG+AGG | - | chr1_4:48351588-48351607 | Msa0166770:intron | 45.0% |
| TATAGACATGCACTTCCACC+TGG | - | chr1_4:48351662-48351681 | Msa0166770:intron | 45.0% | |
| TGAGGAGGAGATTGAAAAGC+AGG | - | chr1_4:48351745-48351764 | Msa0166770:intron | 45.0% | |
| ! | TAGCCCCTCCTTTTTAATCG+AGG | - | chr1_4:48352031-48352050 | Msa0166770:intron | 45.0% |
| !! | GTCCAATGCTAGCTTGTTTG+TGG | - | chr1_4:48352202-48352221 | Msa0166770:intron | 45.0% |
| !! | CATCAGGTTCTGGTTCTCTT+TGG | + | chr1_4:48352253-48352272 | None:intergenic | 45.0% |
| ! | AATTGTTACTGGCTGGCATG+GGG | + | chr1_4:48352907-48352926 | None:intergenic | 45.0% |
| ! | CAATTGTTACTGGCTGGCAT+GGG | + | chr1_4:48352908-48352927 | None:intergenic | 45.0% |
| CATGCCAGCCAGTAACAATT+GGG | - | chr1_4:48352907-48352926 | Msa0166770:intron | 45.0% | |
| GAATCCCAAAACCATGGCTT+TGG | - | chr1_4:48353173-48353192 | Msa0166770:CDS | 45.0% | |
| ! | GGAATCCCTCAACCATGTTT+TGG | + | chr1_4:48353219-48353238 | None:intergenic | 45.0% |
| CTCCCTCCATCCCTATTAAT+AGG | + | chr1_4:48353563-48353582 | None:intergenic | 45.0% | |
| GCGAAAGGAAGGAAGGAAAA+TGG | - | chr1_4:48353758-48353777 | Msa0166770:intron | 45.0% | |
| AAGGGATGATAACCCTTGCA+TGG | - | chr1_4:48353781-48353800 | Msa0166770:intron | 45.0% | |
| AGGGATGATAACCCTTGCAT+GGG | - | chr1_4:48353782-48353801 | Msa0166770:intron | 45.0% | |
| ATGGGAGGGTCTTAGTTTCA+TGG | + | chr1_4:48353822-48353841 | None:intergenic | 45.0% | |
| ACTAAGACCCTCCCATATGA+AGG | - | chr1_4:48353826-48353845 | Msa0166770:intron | 45.0% | |
| ! | GTATTAGGGGAGGATTTTGG+AGG | - | chr1_4:48353861-48353880 | Msa0166770:intron | 45.0% |
| TTAGGAAAAAGAGGGGGGAA+GGG | + | chr1_4:48354057-48354076 | None:intergenic | 45.0% | |
| TGGGAGTTAGGAAAAAGAGG+GGG | + | chr1_4:48354063-48354082 | None:intergenic | 45.0% | |
| !! | ACTGGGAGTGCTGCTAATAA+TGG | - | chr1_4:48354260-48354279 | Msa0166770:intron | 45.0% |
| ATCGTCGTCGTCAATGTCAT+CGG | + | chr1_4:48354327-48354346 | None:intergenic | 45.0% | |
| TGACGACGACGATGATGAAT+TGG | - | chr1_4:48354334-48354353 | Msa0166770:CDS | 45.0% | |
| CGACGATGATGAATTGGACT+TGG | - | chr1_4:48354340-48354359 | Msa0166770:CDS | 45.0% | |
| ! | CTTGGACGAGTTGAATGAAC+TGG | - | chr1_4:48354358-48354377 | Msa0166770:CDS | 45.0% |
| !! | ATAAATATTATAAATAAAAG+AGG | + | chr1_4:48353914-48353933 | None:intergenic | 5.0% |
| ! | TGTACCTGGTGCCAGTGTTT+GGG | + | chr1_4:48349801-48349820 | None:intergenic | 50.0% |
| TTTCTGGGTGTGTGTGTACC+TGG | + | chr1_4:48349815-48349834 | None:intergenic | 50.0% | |
| ! | TTCAACCGGGTTTTCTGCGT+AGG | - | chr1_4:48350404-48350423 | Msa0166770:intron | 50.0% |
| ! | TTTTCTGCGTAGGCCCTGTT+TGG | - | chr1_4:48350414-48350433 | Msa0166770:intron | 50.0% |
| GCGGTAGAGAGGAAGCAATA+TGG | - | chr1_4:48351599-48351618 | Msa0166770:intron | 50.0% | |
| GGGCTAAGAATGACCGTATG+AGG | - | chr1_4:48351960-48351979 | Msa0166770:intron | 50.0% | |
| !!! | TGAAGGGGCTGCGTGTTTTT+TGG | - | chr1_4:48352067-48352086 | Msa0166770:intron | 50.0% |
| ! | CCAATTGTTACTGGCTGGCA+TGG | + | chr1_4:48352909-48352928 | None:intergenic | 50.0% |
| CCATGCCAGCCAGTAACAAT+TGG | - | chr1_4:48352906-48352925 | Msa0166770:intron | 50.0% | |
| TGTTTGGGCGAAAGGAAGGA+AGG | - | chr1_4:48353751-48353770 | Msa0166770:intron | 50.0% | |
| GGGATGATAACCCTTGCATG+GGG | - | chr1_4:48353783-48353802 | Msa0166770:intron | 50.0% | |
| GGATGATAACCCTTGCATGG+GGG | - | chr1_4:48353784-48353803 | Msa0166770:intron | 50.0% | |
| GATGATAACCCTTGCATGGG+GGG | - | chr1_4:48353785-48353804 | Msa0166770:intron | 50.0% | |
| AGAACAAACCCCCCATGCAA+GGG | + | chr1_4:48353796-48353815 | None:intergenic | 50.0% | |
| AAGAACAAACCCCCCATGCA+AGG | + | chr1_4:48353797-48353816 | None:intergenic | 50.0% | |
| GTTAGGAAAAAGAGGGGGGA+AGG | + | chr1_4:48354058-48354077 | None:intergenic | 50.0% | |
| GGGAGTTAGGAAAAAGAGGG+GGG | + | chr1_4:48354062-48354081 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCTCTTAG+TGG | - | chr1_4:48354142-48354161 | Msa0166770:intron | 50.0% | |
| TGTAGCTGACCCCTCTTAGT+GGG | - | chr1_4:48354143-48354162 | Msa0166770:intron | 50.0% | |
| TCGTCGTCGTCAATGTCATC+GGG | + | chr1_4:48354326-48354345 | None:intergenic | 50.0% | |
| CAGCTCCTGGCTCCTTAATT+TGG | + | chr1_4:48354409-48354428 | None:intergenic | 50.0% | |
| CAGGATTAAGCTTCAGCTCC+TGG | + | chr1_4:48354422-48354441 | None:intergenic | 50.0% | |
| TCGAATGCAAGGAATGCCAG+TGG | + | chr1_4:48354512-48354531 | None:intergenic | 50.0% | |
| ACTGGCATTCCTTGCATTCG+AGG | - | chr1_4:48354511-48354530 | Msa0166770:five_prime_UTR | 50.0% | |
| TCTGTAGTTCGGTCCCTCAT+TGG | - | chr1_4:48354627-48354646 | Msa0166770:five_prime_UTR | 50.0% | |
| CTAACCCAAACACTGGCACC+AGG | - | chr1_4:48349794-48349813 | Msa0166770:three_prime_UTR | 55.0% | |
| ! | GTGTACCTGGTGCCAGTGTT+TGG | + | chr1_4:48349802-48349821 | None:intergenic | 55.0% |
| !! | GCTTCGGAGGCATCTCGTAT+CGG | + | chr1_4:48349941-48349960 | None:intergenic | 55.0% |
| !! | ATCGGTTCTGGGTTGAACGG+AGG | + | chr1_4:48350075-48350094 | None:intergenic | 55.0% |
| !! | GGGATCGGTTCTGGGTTGAA+CGG | + | chr1_4:48350078-48350097 | None:intergenic | 55.0% |
| AGTCAGCCTAAAGTCCCACC+TGG | - | chr1_4:48350771-48350790 | Msa0166770:intron | 55.0% | |
| GGACGAGAGAGATGCCAGTT+TGG | - | chr1_4:48351919-48351938 | Msa0166770:intron | 55.0% | |
| CTTAGCCCTCTCTGCCTGTT+GGG | + | chr1_4:48351948-48351967 | None:intergenic | 55.0% | |
| TCTTAGCCCTCTCTGCCTGT+TGG | + | chr1_4:48351949-48351968 | None:intergenic | 55.0% | |
| TGGATCCATCTTCAGGGGAC+TGG | - | chr1_4:48354242-48354261 | Msa0166770:intron | 55.0% | |
| GGATCCATCTTCAGGGGACT+GGG | - | chr1_4:48354243-48354262 | Msa0166770:intron | 55.0% | |
| CAGGGCCTACGCAGAAAACC+CGG | + | chr1_4:48350412-48350431 | None:intergenic | 60.0% | |
| TGCCAGTTTGGCTGCCCAAC+AGG | - | chr1_4:48351931-48351950 | Msa0166770:intron | 60.0% | |
| TGCCTGTTGGGCAGCCAAAC+TGG | + | chr1_4:48351936-48351955 | None:intergenic | 60.0% | |
| AGAGGGGGGAAGGGTAGTGA+GGG | + | chr1_4:48354048-48354067 | None:intergenic | 60.0% | |
| AAGAGGGGGGAAGGGTAGTG+AGG | + | chr1_4:48354049-48354068 | None:intergenic | 60.0% | |
| CACTCCCAGTCCCCTGAAGA+TGG | + | chr1_4:48354250-48354269 | None:intergenic | 60.0% | |
| ! | CCACCTGTTGCTGAGGTGCT+GGG | + | chr1_4:48354287-48354306 | None:intergenic | 60.0% |
| ACCACCTGTTGCTGAGGTGC+TGG | + | chr1_4:48354288-48354307 | None:intergenic | 60.0% | |
| GTCTGCACCACCTGTTGCTG+AGG | + | chr1_4:48354294-48354313 | None:intergenic | 60.0% | |
| TGGCTGCCCAACAGGCAGAG+AGG | - | chr1_4:48351939-48351958 | Msa0166770:intron | 65.0% | |
| GGCTGCCCAACAGGCAGAGA+GGG | - | chr1_4:48351940-48351959 | Msa0166770:intron | 65.0% | |
| GGGGAAGGGTAGTGAGGGAG+GGG | + | chr1_4:48354043-48354062 | None:intergenic | 65.0% | |
| GGGGGAAGGGTAGTGAGGGA+GGG | + | chr1_4:48354044-48354063 | None:intergenic | 65.0% | |
| GGTCCCAGCACCTCAGCAAC+AGG | - | chr1_4:48354281-48354300 | Msa0166770:CDS | 65.0% | |
| CCCAGCACCTCAGCAACAGG+TGG | - | chr1_4:48354284-48354303 | Msa0166770:CDS | 65.0% | |
| GGGGGGAAGGGTAGTGAGGG+AGG | + | chr1_4:48354045-48354064 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 48349722 | 48354652 | 48349722 | ID=Msa0166770;Name=Msa0166770 |
| chr1_4 | mRNA | 48349722 | 48354652 | 48349722 | ID=Msa0166770-mRNA-1;Parent=Msa0166770;Name=Msa0166770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226|1|1|1|1|1|8|216|360 |
| chr1_4 | exon | 48349722 | 48350117 | 48349722 | ID=Msa0166770-mRNA-1:exon:14054;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48352088 | 48352190 | 48352088 | ID=Msa0166770-mRNA-1:exon:14053;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48352393 | 48352523 | 48352393 | ID=Msa0166770-mRNA-1:exon:14052;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48352608 | 48352796 | 48352608 | ID=Msa0166770-mRNA-1:exon:14051;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48352983 | 48353071 | 48352983 | ID=Msa0166770-mRNA-1:exon:14050;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48353158 | 48353298 | 48353158 | ID=Msa0166770-mRNA-1:exon:14049;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48353582 | 48353666 | 48353582 | ID=Msa0166770-mRNA-1:exon:14048;Parent=Msa0166770-mRNA-1 |
| chr1_4 | exon | 48354262 | 48354652 | 48354262 | ID=Msa0166770-mRNA-1:exon:14047;Parent=Msa0166770-mRNA-1 |
| chr1_4 | five_prime_UTR | 48354427 | 48354652 | 48354427 | ID=Msa0166770-mRNA-1:five_prime_utr;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48354262 | 48354426 | 48354262 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48353582 | 48353666 | 48353582 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48353158 | 48353298 | 48353158 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48352983 | 48353071 | 48352983 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48352608 | 48352796 | 48352608 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48352393 | 48352523 | 48352393 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48352088 | 48352190 | 48352088 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | CDS | 48349938 | 48350117 | 48349938 | ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1 |
| chr1_4 | three_prime_UTR | 48349722 | 48349937 | 48349722 | ID=Msa0166770-mRNA-1:three_prime_utr;Parent=Msa0166770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
