AlfalfaGEDB | Msa0166770

M. sativa cultivar zhongmu-4 / Msa0166770

KEGG: -
GO: -
PFAM: PF16543.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0166770	XP_013468260.1	99.723	361	0	1	1	360	1	361	0.0	732

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0166770	sp\|Q0JHZ2\|C3H11_ORYSJ	71.978	364	92	5	1	357	1	361	4.35e-173	489

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0166770	A0A072VKH3	99.723	361	0	1	1	360	1	361	0.0	732

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TFs/TRs:

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Gene ID	Type	Classification
Msa0166770	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0116580	Msa0166770	0.928754	1.845619e-92	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0166770	MtrunA17_Chr1g0181781	99.723	361	0	1	1	360	1	361	0.0	732

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0166770	AT2G20280.1	72.776	371	88	6	1	360	1	369	3.71e-160	453

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Find 99 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGCATAATACGGACT+TGG	0.543376	1_4:+48353267	None:intergenic
AAAGTGGGTCAGTGTGCTAA+GGG	0.517849	1_4:-48353241	Msa0166770:CDS
AACTCGCATAATACGGACTT+GGG	0.519493	1_4:+48353268	None:intergenic
AATACCTTTGCATCTTGTTT+GGG	0.345954	1_4:+48354257	None:intergenic
AATGAAAATGATTACCAGGT+GGG	0.607119	1_4:+48353567	None:intergenic
ACATTCTGTTCAGTTTCATC+AGG	0.434153	1_4:+48352086	None:intergenic
ACCACCTGTTGCTGAGGTGC+TGG	0.284681	1_4:+48350067	None:intergenic
ACTGGCATTCCTTGCATTCG+AGG	0.486440	1_4:-48349841	Msa0166770:three_prime_UTR
ACTGGGAGTGCTGCTAATAA+TGG	0.388945	1_4:-48350092	Msa0166770:CDS
AGAGACATTGGAGAAAGTGG+TGG	0.637831	1_4:-48353027	Msa0166770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGTTGAAGACAAAACTTT+CGG	-	chr1_4:48349993-48350012	Msa0166770:CDS	30.0%
TAATACCTTTGCATCTTGTT+TGG	+	chr1_4:48350099-48350118	None:intergenic	30.0%
TCGAATAAGCCAATCAATAA+AGG	-	chr1_4:48350352-48350371	Msa0166770:intron	30.0%
AATGAAAATGATTACCAGGT+GGG	+	chr1_4:48350788-48350807	None:intergenic	30.0%
GTTTAATTCTGATACACTGT+CGG	-	chr1_4:48350827-48350846	Msa0166770:intron	30.0%
ATTTGAATGTTCAGAGGAAA+GGG	-	chr1_4:48351157-48351176	Msa0166770:intron	30.0%
ATACAATTCTTACCACCATT+TGG	+	chr1_4:48351641-48351660	None:intergenic	30.0%
ATCTGATAAAATGCCAATTG+AGG	-	chr1_4:48351727-48351746	Msa0166770:intron	30.0%
TAGAACAACTCAGTAGTTAT+AGG	+	chr1_4:48351878-48351897	None:intergenic	30.0%
GATAATGAACATACCTCATA+CGG	+	chr1_4:48351976-48351995	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	48349722	48354652	48349722	ID=Msa0166770;Name=Msa0166770
chr1_4	mRNA	48349722	48354652	48349722	ID=Msa0166770-mRNA-1;Parent=Msa0166770;Name=Msa0166770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226\|1\|1\|1\|1\|1\|8\|216\|360
chr1_4	exon	48349722	48350117	48349722	ID=Msa0166770-mRNA-1:exon:14054;Parent=Msa0166770-mRNA-1
chr1_4	exon	48352088	48352190	48352088	ID=Msa0166770-mRNA-1:exon:14053;Parent=Msa0166770-mRNA-1
chr1_4	exon	48352393	48352523	48352393	ID=Msa0166770-mRNA-1:exon:14052;Parent=Msa0166770-mRNA-1
chr1_4	exon	48352608	48352796	48352608	ID=Msa0166770-mRNA-1:exon:14051;Parent=Msa0166770-mRNA-1
chr1_4	exon	48352983	48353071	48352983	ID=Msa0166770-mRNA-1:exon:14050;Parent=Msa0166770-mRNA-1
chr1_4	exon	48353158	48353298	48353158	ID=Msa0166770-mRNA-1:exon:14049;Parent=Msa0166770-mRNA-1
chr1_4	exon	48353582	48353666	48353582	ID=Msa0166770-mRNA-1:exon:14048;Parent=Msa0166770-mRNA-1
chr1_4	exon	48354262	48354652	48354262	ID=Msa0166770-mRNA-1:exon:14047;Parent=Msa0166770-mRNA-1
chr1_4	five_prime_UTR	48354427	48354652	48354427	ID=Msa0166770-mRNA-1:five_prime_utr;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48354262	48354426	48354262	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48353582	48353666	48353582	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48353158	48353298	48353158	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48352983	48353071	48352983	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48352608	48352796	48352608	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48352393	48352523	48352393	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48352088	48352190	48352088	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	CDS	48349938	48350117	48349938	ID=Msa0166770-mRNA-1:cds;Parent=Msa0166770-mRNA-1
chr1_4	three_prime_UTR	48349722	48349937	48349722	ID=Msa0166770-mRNA-1:three_prime_utr;Parent=Msa0166770-mRNA-1

Gene Sequence

>Msa0166770

ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTCGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCCTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAGTCCGTATTATGCGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATATACAGTGATAAGCGTGACGATGATACAATGGAAGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTCTATCAATGGAAGAAGAAAAAAATGGACGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGTGCAGACGATGAACTTCCCGATGACATTGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA

Protein sequence

>Msa0166770

MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEPGAEA*