AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116580 MtrunA17_Chr1g0181781 99.723 361 0 1 1 360 1 361 0.0 732
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116580 AT2G20280.1 72.776 371 88 6 1 360 1 369 3.71e-160 453

Find 124 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTTATTCTTGGGAGTTTC+TGG 0.096679 1_3:+35598274 Msa0116580:three_prime_UTR
CAGCTCCTGGCTCCTTAATT+TGG 0.131430 1_3:-35597834 None:intergenic
TCGAGAAGCTTACGGAAATT+TGG 0.212504 1_3:-35593514 None:intergenic
TTCAACAACCTTCTGCTTCT+TGG 0.227516 1_3:-35593755 None:intergenic
TTAGATTAGGGTTTGTGTTT+TGG 0.233492 1_3:-35593539 None:intergenic
ATCTTGTTTGGGATCGGTTC+TGG 0.237299 1_3:-35593860 None:intergenic
TAATACCTTTGCATCTTGTT+TGG 0.261505 1_3:-35593872 None:intergenic
TGCCTGTTGGGCAGCCAAAC+TGG 0.270781 1_3:-35595709 None:intergenic
AAACTCACATAATACGGATT+TGG 0.275963 1_3:-35594861 None:intergenic
CTTAATTTGGATTGATGTCT+TGG 0.282985 1_3:-35597821 None:intergenic
ACCACCTGTTGCTGAGGTGC+TGG 0.284681 1_3:-35597713 None:intergenic
CAAGACATCAATCCAAATTA+AGG 0.287429 1_3:+35597822 Msa0116580:CDS
CCAATGTTTGGGTTAGATTA+GGG 0.295008 1_3:-35593551 None:intergenic
CATCAGGTTCTGGTTCTCTT+TGG 0.299666 1_3:-35596026 None:intergenic
GCCAATGTTTGGGTTAGATT+AGG 0.299879 1_3:-35593552 None:intergenic
TGTTCAGTTTCATCAGGTTC+TGG 0.302433 1_3:-35596036 None:intergenic
TGATGATGTGAGAGATTATC+TGG 0.310502 1_3:-35593598 None:intergenic
GGAAGCAATATGGTTGGTTT+TGG 0.321181 1_3:+35595385 Msa0116580:CDS
CCAAATGAAGGCTTTGTTAG+AGG 0.323021 1_3:+35595476 Msa0116580:CDS
CCTCTAACAAAGCCTTCATT+TGG 0.329335 1_3:-35595476 None:intergenic
AATACCTTTGCATCTTGTTT+GGG 0.345954 1_3:-35593871 None:intergenic
AACTCACATAATACGGATTT+GGG 0.357294 1_3:-35594860 None:intergenic
GTTGTTGAAGACAAAACTTT+TGG 0.358058 1_3:+35593769 Msa0116580:CDS
TCTGTAGTTCGGTCCCTCAT+TGG 0.362152 1_3:+35598055 Msa0116580:three_prime_UTR
GTGTACCTGGTGCCAATGTT+TGG 0.367839 1_3:-35593563 None:intergenic
ATACAATTCTTACCACCATT+TGG 0.368919 1_3:-35595414 None:intergenic
GTGTGATTGAAGGGGTATAT+CGG 0.370307 1_3:+35593486 Msa0116580:five_prime_UTR
TGCCAGTTTGGCTGCCCAAC+AGG 0.370933 1_3:+35595707 Msa0116580:CDS
TAGAACAACTCAGTAGTTAT+AGG 0.372615 1_3:-35595651 None:intergenic
GTAGGGAGCTAGGTTATTCT+TGG 0.374180 1_3:+35598264 Msa0116580:three_prime_UTR
TGGATCCATCTTCAGGGGAC+TGG 0.376448 1_3:+35597670 Msa0116580:intron
CTTAGCCCTCTCTGCCTGTT+GGG 0.378571 1_3:-35595721 None:intergenic
TGATTACCAGGTGGGACTTT+AGG 0.387712 1_3:-35594553 None:intergenic
ACTGGGAGTGCTGCTAATAA+TGG 0.388945 1_3:+35597688 Msa0116580:CDS
GTCCAATGCTAGCTTGTTTG+TGG 0.394012 1_3:+35595978 Msa0116580:CDS
TGACGACGACGATGATGAAT+TGG 0.394183 1_3:+35597762 Msa0116580:CDS
CAGGATTAAGCTTCAGCTCC+TGG 0.399587 1_3:-35597847 None:intergenic
GGATCCATCTTCAGGGGACT+GGG 0.402542 1_3:+35597671 Msa0116580:intron
TGTACCTGGTGCCAATGTTT+GGG 0.404173 1_3:-35593562 None:intergenic
TCTTGTTTGGGATCGGTTCT+GGG 0.408315 1_3:-35593859 None:intergenic
CTCTAACAAAGCCTTCATTT+GGG 0.418201 1_3:-35595475 None:intergenic
TCTTAGCCCTCTCTGCCTGT+TGG 0.422157 1_3:-35595722 None:intergenic
GGACGAGAGAGATGCCAGTT+TGG 0.425678 1_3:+35595695 Msa0116580:CDS
TCCTCTCATACGAAAGTAAA+GGG 0.432143 1_3:+35598352 Msa0116580:three_prime_UTR
ACATTCTGTTCAGTTTCATC+AGG 0.434153 1_3:-35596042 None:intergenic
CCACCTGTTGCTGAGGTGCT+GGG 0.434200 1_3:-35597712 None:intergenic
ATTTGAATGTTCAGAGGAAA+GGG 0.439404 1_3:+35594933 Msa0116580:CDS
GGTCCCAGCACCTCAGCAAC+AGG 0.448016 1_3:+35597709 Msa0116580:CDS
CTTTGCATCTTGTTTGGGAT+CGG 0.453264 1_3:-35593866 None:intergenic
ATCGTCGTCGTCAATGTCAT+CGG 0.466901 1_3:-35597752 None:intergenic
CAAGGTTGAGAATACTTCTC+AGG 0.468658 1_3:-35597866 None:intergenic
ACTGCTAAAGTGTTGTGTTA+TGG 0.472627 1_3:+35598219 Msa0116580:three_prime_UTR
TAGGGAGCTAGGTTATTCTT+GGG 0.474338 1_3:+35598265 Msa0116580:three_prime_UTR
CGACGATGATGAATTGGACT+TGG 0.483319 1_3:+35597768 Msa0116580:CDS
CTACTGAGTTGTTCTATCAA+TGG 0.484577 1_3:+35595658 Msa0116580:CDS
ACTGGCATTCCTTGCATTCG+AGG 0.486440 1_3:+35597939 Msa0116580:three_prime_UTR
CTTGGACGAGTTGAATGAAC+TGG 0.496577 1_3:+35597786 Msa0116580:CDS
TGAGGAGGAGATTGAAAAGC+AGG 0.498835 1_3:+35595521 Msa0116580:CDS
TAAAGTGGGTCAGTGTGCTA+AGG 0.499067 1_3:+35594886 Msa0116580:CDS
TGTGATTGAAGGGGTATATC+GGG 0.499449 1_3:+35593487 Msa0116580:five_prime_UTR
ATCCTCTCATACGAAAGTAA+AGG 0.501399 1_3:+35598351 Msa0116580:three_prime_UTR
AAGCAGCCTTTGCGAAGTAA+AGG 0.504483 1_3:-35598158 None:intergenic
GGGCTAAGAATGACCGTATG+AGG 0.510546 1_3:+35595736 Msa0116580:CDS
TTGAATTGAATCAATTACTA+CGG 0.513438 1_3:+35593656 Msa0116580:five_prime_UTR
GCGGTAGAGAGGAAGCAATA+TGG 0.516289 1_3:+35595375 Msa0116580:CDS
AAAGTGGGTCAGTGTGCTAA+GGG 0.517849 1_3:+35594887 Msa0116580:CDS
TGTTCTAAAATCCCAAATGA+AGG 0.519608 1_3:+35595464 Msa0116580:CDS
ATAAATCATACAATATCTGT+TGG 0.520423 1_3:-35595156 None:intergenic
TTTACTTTCGTATGAGAGGA+TGG 0.524234 1_3:-35598349 None:intergenic
TCGTCGTCGTCAATGTCATC+GGG 0.524494 1_3:-35597751 None:intergenic
GGCTGCCCAACAGGCAGAGA+GGG 0.524561 1_3:+35595716 Msa0116580:CDS
ACCCTTTACTTTCGTATGAG+AGG 0.525141 1_3:-35598353 None:intergenic
ATATATGTCCGTAGGGAGCT+AGG 0.525625 1_3:+35598254 Msa0116580:three_prime_UTR
GATTTGAATGTTCAGAGGAA+AGG 0.525852 1_3:+35594932 Msa0116580:CDS
AGTGATTTCATTATCATCGA+AGG 0.526299 1_3:-35597978 None:intergenic
TCAAGAGACATTGGAGAAAG+TGG 0.526557 1_3:+35595098 Msa0116580:CDS
CTCATGATTTGAATGTTCAG+AGG 0.535502 1_3:+35594927 Msa0116580:CDS
TCAATCCAAATTAAGGAGCC+AGG 0.536632 1_3:+35597829 Msa0116580:CDS
TATCATATGCTTCTAGCCAC+TGG 0.539195 1_3:+35597921 Msa0116580:three_prime_UTR
ATGAAGTGGAAAGCAATATG+TGG 0.540264 1_3:+35598307 Msa0116580:three_prime_UTR
TATAGACATGCACTTCCACC+TGG 0.544388 1_3:+35595438 Msa0116580:CDS
ACGAAAGTAAAGGGTTGAAG+TGG 0.544522 1_3:+35598361 Msa0116580:three_prime_UTR
GCTTCGGAGGCATCTCGTAT+CGG 0.548418 1_3:-35593714 None:intergenic
ATCCACAAACAAGCTAGCAT+TGG 0.551369 1_3:-35595980 None:intergenic
GGAAGAGAAGGCAAAAGAGA+AGG 0.553385 1_3:+35594495 Msa0116580:CDS
ATCTGATAAAATGCCAATTG+AGG 0.553676 1_3:+35595503 Msa0116580:CDS
TGTTAGATACAATGGAAGAG+TGG 0.555431 1_3:+35595073 Msa0116580:intron
GAGAATGAACATACCTCATA+CGG 0.556129 1_3:-35595749 None:intergenic
CATTGGACCTGTGACTGTGA+TGG 0.557118 1_3:+35598072 Msa0116580:three_prime_UTR
GAGTTTCCTTTACTTCGCAA+AGG 0.560712 1_3:+35598152 Msa0116580:three_prime_UTR
GTTAGATACAATGGAAGAGT+GGG 0.563771 1_3:+35595074 Msa0116580:intron
CCCTAATCTAACCCAAACAT+TGG 0.565135 1_3:+35593551 Msa0116580:five_prime_UTR
GTGACGTGCAGTGTGATTGA+AGG 0.567133 1_3:+35593476 None:intergenic
AAAATGTCCATCACAGTCAC+AGG 0.569630 1_3:-35598079 None:intergenic
CTGGTTGAAAGAAAATGAAG+TGG 0.570915 1_3:+35598293 Msa0116580:three_prime_UTR
TCTTATGTTGTTAGATACAA+TGG 0.573310 1_3:+35595065 Msa0116580:intron
GTCTGCACCACCTGTTGCTG+AGG 0.573436 1_3:-35597719 None:intergenic
AGAGTGGGATCAAGAGACAT+TGG 0.578286 1_3:+35595089 Msa0116580:CDS
AGCATTAAACTATCACATCA+AGG 0.579080 1_3:-35597884 None:intergenic
GGGATCGGTTCTGGGTTGAA+CGG 0.582346 1_3:-35593851 None:intergenic
AAGAATAACCTAGCTCCCTA+CGG 0.588017 1_3:-35598262 None:intergenic
TGAAGTGGAAAGCAATATGT+GGG 0.589339 1_3:+35598308 Msa0116580:three_prime_UTR
TAGAGAGGAAGCAATATGGT+TGG 0.597838 1_3:+35595379 Msa0116580:CDS
ACACAACACTTTAGCAGTGG+TGG 0.600255 1_3:-35598214 None:intergenic
CGATCCCAAACAAGATGCAA+AGG 0.603297 1_3:+35593867 Msa0116580:CDS
TGATAAAATGCCAATTGAGG+AGG 0.604474 1_3:+35595506 Msa0116580:CDS
GCAACTTATATATGTCCGTA+GGG 0.605622 1_3:+35598247 Msa0116580:three_prime_UTR
TGACGTGCAGTGTGATTGAA+GGG 0.605647 1_3:+35593477 None:intergenic
AATGAAAATGATTACCAGGT+GGG 0.607119 1_3:-35594561 None:intergenic
TTTGAATGTTCAGAGGAAAG+GGG 0.609926 1_3:+35594934 Msa0116580:CDS
TGCAACTTATATATGTCCGT+AGG 0.610581 1_3:+35598246 Msa0116580:three_prime_UTR
CACAGTCACAGGTCCAATGA+GGG 0.616670 1_3:-35598068 None:intergenic
CCCAGCACCTCAGCAACAGG+TGG 0.619651 1_3:+35597712 Msa0116580:CDS
TGATGTAGCCAAGAAGCAGA+AGG 0.627538 1_3:+35593747 Msa0116580:CDS
CTAACCCAAACATTGGCACC+AGG 0.634329 1_3:+35593558 Msa0116580:five_prime_UTR
TCACAGTCACAGGTCCAATG+AGG 0.636992 1_3:-35598069 None:intergenic
AGAGACATTGGAGAAAGTGG+TGG 0.637831 1_3:+35595101 Msa0116580:CDS
TACAGTGATAAGCGTGACGA+TGG 0.639061 1_3:+35594971 Msa0116580:CDS
TGGCTGCCCAACAGGCAGAG+AGG 0.639365 1_3:+35595715 Msa0116580:CDS
GATGATGTGAGAGATTATCT+GGG 0.643301 1_3:-35593597 None:intergenic
AGTCAGCCTAAAGTCCCACC+TGG 0.657066 1_3:+35594547 Msa0116580:CDS
ATAACACAACACTTTAGCAG+TGG 0.682795 1_3:-35598217 None:intergenic
TCGAATGCAAGGAATGCCAG+TGG 0.699446 1_3:-35597937 None:intergenic
GACGTGCAGTGTGATTGAAG+GGG 0.780978 1_3:+35593478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATATCTGAATTTTGTT+AGG + chr1_3:35594830-35594849 Msa0116580:intron 15.0%
!! TTTAAAAAACTCACATAATA+CGG - chr1_3:35594870-35594889 None:intergenic 15.0%
!!! TTTTTAAAGTGTATTACAAA+TGG + chr1_3:35595871-35595890 Msa0116580:intron 15.0%
!!! TTTTTTTTACTCATAACAAA+TGG + chr1_3:35596419-35596438 Msa0116580:intron 15.0%
!! AAAAAAAAAAGAAAGAGAAA+AGG - chr1_3:35597447-35597466 None:intergenic 15.0%
!!! AATTTTCTCTTATACTATTT+CGG - chr1_3:35598442-35598461 None:intergenic 15.0%
!! TTGAATTGAATCAATTACTA+CGG + chr1_3:35593656-35593675 Msa0116580:five_prime_UTR 20.0%
!! TAATCTACGATAAAAGAATA+TGG - chr1_3:35593923-35593942 None:intergenic 20.0%
!! TTTATCGTAGATTATTCAAA+TGG + chr1_3:35593929-35593948 Msa0116580:intron 20.0%
!! TTATCGTAGATTATTCAAAT+GGG + chr1_3:35593930-35593949 Msa0116580:intron 20.0%
!!! CATTATATAGATTTTTCAAC+CGG + chr1_3:35594166-35594185 Msa0116580:intron 20.0%
!!! ATTATATAGATTTTTCAACC+GGG + chr1_3:35594167-35594186 Msa0116580:intron 20.0%
!!! TATTTTTTTCTGTAGTTCAA+TGG + chr1_3:35594779-35594798 Msa0116580:intron 20.0%
!!! ATTTTTTTCTGTAGTTCAAT+GGG + chr1_3:35594780-35594799 Msa0116580:intron 20.0%
!!! ATTATGTGAGTTTTTTAAAG+TGG + chr1_3:35594871-35594890 Msa0116580:CDS 20.0%
!!! TTATGTGAGTTTTTTAAAGT+GGG + chr1_3:35594872-35594891 Msa0116580:CDS 20.0%
!! AAAACCAAAAAGTAAGAAAA+AGG - chr1_3:35595043-35595062 None:intergenic 20.0%
!! ATAAATCATACAATATCTGT+TGG - chr1_3:35595159-35595178 None:intergenic 20.0%
!! GTATGATTTATTAGATTTGT+TGG + chr1_3:35595168-35595187 Msa0116580:intron 20.0%
!!! TATCCACTTTCATTTTTTTA+TGG + chr1_3:35595219-35595238 Msa0116580:intron 20.0%
!! TTTATTCTTGCTTATTCAAA+TGG + chr1_3:35595297-35595316 Msa0116580:intron 20.0%
!! TTCTAACATATTATGTAACA+TGG + chr1_3:35595599-35595618 Msa0116580:intron 20.0%
!! AAATTTAACAGTTGCAAATT+TGG + chr1_3:35596166-35596185 Msa0116580:intron 20.0%
!!! GTAAAAAAAACATTTGCTAT+GGG - chr1_3:35596409-35596428 None:intergenic 20.0%
!!! AGTAAAAAAAACATTTGCTA+TGG - chr1_3:35596410-35596429 None:intergenic 20.0%
!!! CTTTTTGCATATAAAAAGAA+AGG - chr1_3:35596959-35596978 None:intergenic 20.0%
!! ATATACTATAACACATCTTT+AGG + chr1_3:35597155-35597174 Msa0116580:intron 20.0%
!! AATAAAAGAGGAAAATGATT+TGG - chr1_3:35597332-35597351 None:intergenic 20.0%
!! TTTGGGAGAAAAAATTTAAA+GGG - chr1_3:35597409-35597428 None:intergenic 20.0%
!!! AGTTTTTGAAATTCAATTGA+AGG - chr1_3:35597521-35597540 None:intergenic 20.0%
!! AGTTAGGAAAACAAAATATA+TGG - chr1_3:35597648-35597667 None:intergenic 20.0%
!! GAAACTCAATAACAAAAATT+AGG - chr1_3:35598139-35598158 None:intergenic 20.0%
! TAATAAGAGCCTTTATTGAT+TGG - chr1_3:35594140-35594159 None:intergenic 25.0%
! CCAATAAAACATAACAGATT+AGG - chr1_3:35594458-35594477 None:intergenic 25.0%
!! CCTAATCTGTTATGTTTTAT+TGG + chr1_3:35594455-35594474 Msa0116580:intron 25.0%
!! TTATTGGTAACAGAAAAAGA+AGG + chr1_3:35594471-35594490 Msa0116580:intron 25.0%
! TAACAATGAAAATGATTACC+AGG - chr1_3:35594568-35594587 None:intergenic 25.0%
! TTTATATTATTCAGTGTTGC+TGG + chr1_3:35594803-35594822 Msa0116580:intron 25.0%
!!! CTTTCCTTTTTCTTACTTTT+TGG + chr1_3:35595036-35595055 Msa0116580:intron 25.0%
! TCTTATGTTGTTAGATACAA+TGG + chr1_3:35595065-35595084 Msa0116580:intron 25.0%
! TAGCCATAAAAAAATGAAAG+TGG - chr1_3:35595225-35595244 None:intergenic 25.0%
!!! ATTTTTTTATGGCTAATTCG+AGG + chr1_3:35595230-35595249 Msa0116580:intron 25.0%
!! AAAAGTACATAAACAACGTA+CGG - chr1_3:35595332-35595351 None:intergenic 25.0%
!! TACGTTGTTTATGTACTTTT+AGG + chr1_3:35595332-35595351 Msa0116580:intron 25.0%
! TCAATGGAAGAAGAAAAAAA+TGG + chr1_3:35595674-35595693 Msa0116580:CDS 25.0%
! GAAGATAATACAACATGATT+AGG - chr1_3:35595930-35595949 None:intergenic 25.0%
! TATTATCTTCTTAAATGCAG+TGG + chr1_3:35595940-35595959 Msa0116580:intron 25.0%
!!! TAATTTTAATGGCTTTTCCA+TGG + chr1_3:35596090-35596109 Msa0116580:intron 25.0%
! TGGAAAATTGGAAAATTTGA+AGG + chr1_3:35596186-35596205 Msa0116580:intron 25.0%
! TAACAAAAAAATGGCAGTTA+TGG - chr1_3:35596212-35596231 None:intergenic 25.0%
! ACAGCATCATAACAAAAAAA+TGG - chr1_3:35596221-35596240 None:intergenic 25.0%
! AACCAAAAAGCAAATTTGAA+GGG - chr1_3:35596286-35596305 None:intergenic 25.0%
!!! AAATTTGCTTTTTGGTTCAT+TGG + chr1_3:35596289-35596308 Msa0116580:intron 25.0%
! ACACAAATTCATAAAACAAC+TGG - chr1_3:35596567-35596586 None:intergenic 25.0%
!! GTATTGATAAAGGATGTATT+TGG - chr1_3:35596820-35596839 None:intergenic 25.0%
!!! AATTGGTAGAGTATTGATAA+AGG - chr1_3:35596830-35596849 None:intergenic 25.0%
! GCAAATTATTCTAATAGACA+TGG + chr1_3:35597066-35597085 Msa0116580:intron 25.0%
!!! TTTTTTGAACTCCTTCATAT+GGG - chr1_3:35597270-35597289 None:intergenic 25.0%
!!! ATTTTTTGAACTCCTTCATA+TGG - chr1_3:35597271-35597290 None:intergenic 25.0%
! AGGAGTTCAAAAAATGTATT+AGG + chr1_3:35597276-35597295 Msa0116580:intron 25.0%
! GGAGTTCAAAAAATGTATTA+GGG + chr1_3:35597277-35597296 Msa0116580:intron 25.0%
! GAGTTCAAAAAATGTATTAG+GGG + chr1_3:35597278-35597297 Msa0116580:intron 25.0%
! GTTTGGGAGAAAAAATTTAA+AGG - chr1_3:35597410-35597429 None:intergenic 25.0%
!!! AAATTTTTTCTCCCAAACAA+AGG + chr1_3:35597412-35597431 Msa0116580:intron 25.0%
!! TTCAATTGAAGGATTTGTTT+GGG - chr1_3:35597510-35597529 None:intergenic 25.0%
!! ATTCAATTGAAGGATTTGTT+TGG - chr1_3:35597511-35597530 None:intergenic 25.0%
! CAAAAACTAGAAAGCAATAT+AGG + chr1_3:35597533-35597552 Msa0116580:intron 25.0%
!!! TATTTTGTTTTCCTAACTGT+TGG + chr1_3:35597650-35597669 Msa0116580:intron 25.0%
!!! TGGACATTTTTGTTTGAATA+TGG + chr1_3:35598092-35598111 Msa0116580:three_prime_UTR 25.0%
!!! GGACATTTTTGTTTGAATAT+GGG + chr1_3:35598093-35598112 Msa0116580:three_prime_UTR 25.0%
!! ATTTTCATCTGTGACATTTT+CGG + chr1_3:35598402-35598421 Msa0116580:three_prime_UTR 25.0%
! TTAGATTAGGGTTTGTGTTT+TGG - chr1_3:35593542-35593561 None:intergenic 30.0%
! GTTGTTGAAGACAAAACTTT+TGG + chr1_3:35593769-35593788 Msa0116580:CDS 30.0%
! AATACCTTTGCATCTTGTTT+GGG - chr1_3:35593874-35593893 None:intergenic 30.0%
TAATACCTTTGCATCTTGTT+TGG - chr1_3:35593875-35593894 None:intergenic 30.0%
TCGAATAAGCCAATCAATAA+AGG + chr1_3:35594128-35594147 Msa0116580:intron 30.0%
AATGAAAATGATTACCAGGT+GGG - chr1_3:35594564-35594583 None:intergenic 30.0%
GTTTAATTCTGATACACTGT+CGG + chr1_3:35594603-35594622 Msa0116580:intron 30.0%
AACTCACATAATACGGATTT+GGG - chr1_3:35594863-35594882 None:intergenic 30.0%
AAACTCACATAATACGGATT+TGG - chr1_3:35594864-35594883 None:intergenic 30.0%
ATTTGAATGTTCAGAGGAAA+GGG + chr1_3:35594933-35594952 Msa0116580:CDS 30.0%
! TTAGGTATGCAAACACTTTT+TGG + chr1_3:35595350-35595369 Msa0116580:intron 30.0%
ATACAATTCTTACCACCATT+TGG - chr1_3:35595417-35595436 None:intergenic 30.0%
!! TGTTCTAAAATCCCAAATGA+AGG + chr1_3:35595464-35595483 Msa0116580:CDS 30.0%
ATCTGATAAAATGCCAATTG+AGG + chr1_3:35595503-35595522 Msa0116580:CDS 30.0%
TAGAACAACTCAGTAGTTAT+AGG - chr1_3:35595654-35595673 None:intergenic 30.0%
! TTTTCCTCGATTAAAAAGGA+GGG - chr1_3:35595814-35595833 None:intergenic 30.0%
! TCCTTTTTAATCGAGGAAAA+GGG + chr1_3:35595814-35595833 Msa0116580:intron 30.0%
AGGAAAAGGGAAATATTGAA+GGG + chr1_3:35595827-35595846 Msa0116580:intron 30.0%
! GCGTCTCTTTGTAATTTTAA+TGG + chr1_3:35596079-35596098 Msa0116580:intron 30.0%
! GCAGATTTTATCTATATCCA+TGG - chr1_3:35596110-35596129 None:intergenic 30.0%
GATAAAATCTGCAATATGAC+TGG + chr1_3:35596118-35596137 Msa0116580:intron 30.0%
CAGTTGCAAATTTGGAAAAT+TGG + chr1_3:35596174-35596193 Msa0116580:intron 30.0%
TTGCATAAAACTAGAAAAGC+AGG - chr1_3:35596256-35596275 None:intergenic 30.0%
!! TACCCTTCAAATTTGCTTTT+TGG + chr1_3:35596281-35596300 Msa0116580:intron 30.0%
GAACCAAAAAGCAAATTTGA+AGG - chr1_3:35596287-35596306 None:intergenic 30.0%
ATTGGATCTTAGTTTAGACA+TGG + chr1_3:35596307-35596326 Msa0116580:intron 30.0%
TTGGATCTTAGTTTAGACAT+GGG + chr1_3:35596308-35596327 Msa0116580:intron 30.0%
ATTGGGATTTATGGTTCAAA+TGG + chr1_3:35596353-35596372 Msa0116580:intron 30.0%
TTGGGATTTATGGTTCAAAT+GGG + chr1_3:35596354-35596373 Msa0116580:intron 30.0%
! GTTTGTAACTTTTATGCATG+AGG + chr1_3:35596380-35596399 Msa0116580:intron 30.0%
! ACTCATAACAAATGGCTTTT+AGG + chr1_3:35596427-35596446 Msa0116580:intron 30.0%
TTATAGCTCAAAACATGAGA+AGG - chr1_3:35596463-35596482 None:intergenic 30.0%
GTAATTAGTGTCTCATCTTT+AGG + chr1_3:35596508-35596527 Msa0116580:intron 30.0%
! CCAAATGAGTCTTATAAGTA+GGG - chr1_3:35596732-35596751 None:intergenic 30.0%
! ACCAAATGAGTCTTATAAGT+AGG - chr1_3:35596733-35596752 None:intergenic 30.0%
! TGCAAACGGACTTATATTTA+GGG - chr1_3:35596768-35596787 None:intergenic 30.0%
! TTGCAAACGGACTTATATTT+AGG - chr1_3:35596769-35596788 None:intergenic 30.0%
TGTGTCTAGAAATTTGCAAA+CGG - chr1_3:35596782-35596801 None:intergenic 30.0%
AATACTCTACCAATTTGTCT+TGG + chr1_3:35596835-35596854 Msa0116580:intron 30.0%
ACCAATTTGTCTTGGAAAAT+TGG + chr1_3:35596843-35596862 Msa0116580:intron 30.0%
! TCCAATTTTCCAAGACAAAT+TGG - chr1_3:35596847-35596866 None:intergenic 30.0%
!! AGAAGTTCACTTAGTTTGTA+AGG + chr1_3:35597025-35597044 Msa0116580:intron 30.0%
!! AATAGACATGGAATTTGTTG+TGG + chr1_3:35597078-35597097 Msa0116580:intron 30.0%
TGTGCTTATAAACAAGAACT+AGG - chr1_3:35597127-35597146 None:intergenic 30.0%
!!! ACACATCTTTAGGTTTTGTT+TGG + chr1_3:35597165-35597184 Msa0116580:intron 30.0%
!!! CACATCTTTAGGTTTTGTTT+GGG + chr1_3:35597166-35597185 Msa0116580:intron 30.0%
TTCAAAAAATGTATTAGGGG+AGG + chr1_3:35597281-35597300 Msa0116580:intron 30.0%
GAGAAAAAATTTAAAGGGAG+AGG - chr1_3:35597404-35597423 None:intergenic 30.0%
! CTTAATTTGGATTGATGTCT+TGG - chr1_3:35597824-35597843 None:intergenic 30.0%
CAAGACATCAATCCAAATTA+AGG + chr1_3:35597822-35597841 Msa0116580:CDS 30.0%
AGCATTAAACTATCACATCA+AGG - chr1_3:35597887-35597906 None:intergenic 30.0%
! TTTTGGATTCGAGAAGCTTA+CGG - chr1_3:35593525-35593544 None:intergenic 35.0%
! CCAATGTTTGGGTTAGATTA+GGG - chr1_3:35593554-35593573 None:intergenic 35.0%
GATGATGTGAGAGATTATCT+GGG - chr1_3:35593600-35593619 None:intergenic 35.0%
! TGATGATGTGAGAGATTATC+TGG - chr1_3:35593601-35593620 None:intergenic 35.0%
!! ACATCAGCTTTTGATTGCTT+CGG - chr1_3:35593733-35593752 None:intergenic 35.0%
ACAAGCTGTTTATCCAAACA+GGG - chr1_3:35593969-35593988 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATCT+TGG + chr1_3:35594018-35594037 Msa0116580:intron 35.0%
TTAAGCCGTTTATCCAAACA+GGG - chr1_3:35594206-35594225 None:intergenic 35.0%
ATTAAGCCGTTTATCCAAAC+AGG - chr1_3:35594207-35594226 None:intergenic 35.0%
TCATATAAGCCAATCCAGAA+AGG + chr1_3:35594430-35594449 Msa0116580:intron 35.0%
! TTGGTAACAGAAAAAGAAGG+AGG + chr1_3:35594474-35594493 Msa0116580:intron 35.0%
CAATGAAAATGATTACCAGG+TGG - chr1_3:35594565-35594584 None:intergenic 35.0%
CTCATGATTTGAATGTTCAG+AGG + chr1_3:35594927-35594946 Msa0116580:CDS 35.0%
GATTTGAATGTTCAGAGGAA+AGG + chr1_3:35594932-35594951 Msa0116580:CDS 35.0%
TTTGAATGTTCAGAGGAAAG+GGG + chr1_3:35594934-35594953 Msa0116580:CDS 35.0%
!!! GTGTTTGCTTCTTGTTGTTT+TGG + chr1_3:35595004-35595023 Msa0116580:intron 35.0%
!!! TCTTGTTGTTTTGGTTCTGA+TGG + chr1_3:35595013-35595032 Msa0116580:intron 35.0%
TGTTAGATACAATGGAAGAG+TGG + chr1_3:35595073-35595092 Msa0116580:intron 35.0%
GTTAGATACAATGGAAGAGT+GGG + chr1_3:35595074-35595093 Msa0116580:intron 35.0%
!! ATGCAAACACTTTTTGGATG+CGG + chr1_3:35595356-35595375 Msa0116580:CDS 35.0%
!!! GATTTTAGAACATATCCAGG+TGG - chr1_3:35595456-35595475 None:intergenic 35.0%
!!! TGGGATTTTAGAACATATCC+AGG - chr1_3:35595459-35595478 None:intergenic 35.0%
CTCTAACAAAGCCTTCATTT+GGG - chr1_3:35595478-35595497 None:intergenic 35.0%
TGATAAAATGCCAATTGAGG+AGG + chr1_3:35595506-35595525 Msa0116580:CDS 35.0%
! TTTTCAATCTCCTCCTCAAT+TGG - chr1_3:35595519-35595538 None:intergenic 35.0%
AATGACGATGCTTCTTGTAA+GGG - chr1_3:35595561-35595580 None:intergenic 35.0%
AAATGACGATGCTTCTTGTA+AGG - chr1_3:35595562-35595581 None:intergenic 35.0%
! AGGAGTTGTAGTTTTCACTT+GGG - chr1_3:35595634-35595653 None:intergenic 35.0%
! TAGGAGTTGTAGTTTTCACT+TGG - chr1_3:35595635-35595654 None:intergenic 35.0%
CTACTGAGTTGTTCTATCAA+TGG + chr1_3:35595658-35595677 Msa0116580:CDS 35.0%
GAGAATGAACATACCTCATA+CGG - chr1_3:35595752-35595771 None:intergenic 35.0%
TTTCCTCGATTAAAAAGGAG+GGG - chr1_3:35595813-35595832 None:intergenic 35.0%
! CTTTTCCTCGATTAAAAAGG+AGG - chr1_3:35595815-35595834 None:intergenic 35.0%
! CTCCTTTTTAATCGAGGAAA+AGG + chr1_3:35595813-35595832 Msa0116580:intron 35.0%
! TCCCTTTTCCTCGATTAAAA+AGG - chr1_3:35595818-35595837 None:intergenic 35.0%
GAGGAAAAGGGAAATATTGA+AGG + chr1_3:35595826-35595845 Msa0116580:intron 35.0%
GGAAAAGGGAAATATTGAAG+GGG + chr1_3:35595828-35595847 Msa0116580:intron 35.0%
ACATTCTGTTCAGTTTCATC+AGG - chr1_3:35596045-35596064 None:intergenic 35.0%
TGGATCTTAGTTTAGACATG+GGG + chr1_3:35596309-35596328 Msa0116580:intron 35.0%
CCATAAATCCCAATTGTTAC+TGG - chr1_3:35596347-35596366 None:intergenic 35.0%
CCAGTAACAATTGGGATTTA+TGG + chr1_3:35596344-35596363 Msa0116580:intron 35.0%
!! TAACAAATGGCTTTTAGGAG+TGG + chr1_3:35596432-35596451 Msa0116580:intron 35.0%
! TTTTTGCATGCGACAATGTA+TGG + chr1_3:35596484-35596503 Msa0116580:intron 35.0%
AGTGCAAGCTCAAAAGATAT+AGG - chr1_3:35596538-35596557 None:intergenic 35.0%
TTTGTGTCTGAATTCCTGTT+TGG + chr1_3:35596580-35596599 Msa0116580:intron 35.0%
! TTTTCCAAAGCCATGGTTTT+GGG - chr1_3:35596609-35596628 None:intergenic 35.0%
! ATTTTCCAAAGCCATGGTTT+TGG - chr1_3:35596610-35596629 None:intergenic 35.0%
!! AAAACCATGGCTTTGGAAAA+TGG + chr1_3:35596609-35596628 Msa0116580:intron 35.0%
ACAAGAGATTGTCCAAAACA+TGG + chr1_3:35596633-35596652 Msa0116580:intron 35.0%
ATTGTCCAAAACATGGTTGA+GGG + chr1_3:35596640-35596659 Msa0116580:intron 35.0%
!! CAGCATGTTTGTTTTCTGTT+AGG - chr1_3:35596670-35596689 None:intergenic 35.0%
CCCTACTTATAAGACTCATT+TGG + chr1_3:35596729-35596748 Msa0116580:intron 35.0%
! GCAAACGGACTTATATTTAG+GGG - chr1_3:35596767-35596786 None:intergenic 35.0%
! TGCCAAAGTACCCTATTAAT+AGG + chr1_3:35596979-35596998 Msa0116580:intron 35.0%
! GCCAAAGTACCCTATTAATA+GGG + chr1_3:35596980-35596999 Msa0116580:intron 35.0%
! TCCCTATTAATAGGGTACTT+TGG - chr1_3:35596984-35597003 None:intergenic 35.0%
AAGTACCCTATTAATAGGGA+TGG + chr1_3:35596984-35597003 Msa0116580:intron 35.0%
!! GTTCACTTAGTTTGTAAGGT+AGG + chr1_3:35597029-35597048 Msa0116580:intron 35.0%
AAGGTAGGTGGTAAGTATAT+TGG + chr1_3:35597044-35597063 Msa0116580:intron 35.0%
! AATGTATTAGGGGAGGATTT+TGG + chr1_3:35597288-35597307 Msa0116580:intron 35.0%
! GGAATTTCTCACCTTTGTTT+GGG - chr1_3:35597426-35597445 None:intergenic 35.0%
AGGAATTTCTCACCTTTGTT+TGG - chr1_3:35597427-35597446 None:intergenic 35.0%
AATCATTATCCCACTAAGAG+GGG - chr1_3:35597583-35597602 None:intergenic 35.0%
CAATCATTATCCCACTAAGA+GGG - chr1_3:35597584-35597603 None:intergenic 35.0%
AAAAAACTTCCTCGAATGCA+AGG - chr1_3:35597951-35597970 None:intergenic 35.0%
! CGATTCAGTTTTCTGTAGTT+CGG + chr1_3:35598044-35598063 Msa0116580:three_prime_UTR 35.0%
ATAACACAACACTTTAGCAG+TGG - chr1_3:35598220-35598239 None:intergenic 35.0%
!! ACTGCTAAAGTGTTGTGTTA+TGG + chr1_3:35598219-35598238 Msa0116580:three_prime_UTR 35.0%
TGCAACTTATATATGTCCGT+AGG + chr1_3:35598246-35598265 Msa0116580:three_prime_UTR 35.0%
GCAACTTATATATGTCCGTA+GGG + chr1_3:35598247-35598266 Msa0116580:three_prime_UTR 35.0%
CTGGTTGAAAGAAAATGAAG+TGG + chr1_3:35598293-35598312 Msa0116580:three_prime_UTR 35.0%
ATGAAGTGGAAAGCAATATG+TGG + chr1_3:35598307-35598326 Msa0116580:three_prime_UTR 35.0%
TGAAGTGGAAAGCAATATGT+GGG + chr1_3:35598308-35598327 Msa0116580:three_prime_UTR 35.0%
TTTACTTTCGTATGAGAGGA+TGG - chr1_3:35598352-35598371 None:intergenic 35.0%
ATCCTCTCATACGAAAGTAA+AGG + chr1_3:35598351-35598370 Msa0116580:three_prime_UTR 35.0%
TCCTCTCATACGAAAGTAAA+GGG + chr1_3:35598352-35598371 Msa0116580:three_prime_UTR 35.0%
! GTGTGATTGAAGGGGTATAT+CGG + chr1_3:35593486-35593505 Msa0116580:five_prime_UTR 40.0%
! TGTGATTGAAGGGGTATATC+GGG + chr1_3:35593487-35593506 Msa0116580:five_prime_UTR 40.0%
TCGAGAAGCTTACGGAAATT+TGG - chr1_3:35593517-35593536 None:intergenic 40.0%
CCCTAATCTAACCCAAACAT+TGG + chr1_3:35593551-35593570 Msa0116580:five_prime_UTR 40.0%
! GCCAATGTTTGGGTTAGATT+AGG - chr1_3:35593555-35593574 None:intergenic 40.0%
TTCAACAACCTTCTGCTTCT+TGG - chr1_3:35593758-35593777 None:intergenic 40.0%
! CTTTGCATCTTGTTTGGGAT+CGG - chr1_3:35593869-35593888 None:intergenic 40.0%
! TTTTCTGCTTATGCCCTGTT+TGG + chr1_3:35593953-35593972 Msa0116580:intron 40.0%
GACAAGCTGTTTATCCAAAC+AGG - chr1_3:35593970-35593989 None:intergenic 40.0%
! GTGCATGTCATTAGCTGTTT+TGG + chr1_3:35594360-35594379 Msa0116580:intron 40.0%
TAACAGATTAGGAGCCTTTC+TGG - chr1_3:35594447-35594466 None:intergenic 40.0%
GAAAAAGAAGGAGGAAGAGA+AGG + chr1_3:35594483-35594502 Msa0116580:intron 40.0%
TCAAGAGACATTGGAGAAAG+TGG + chr1_3:35595098-35595117 Msa0116580:CDS 40.0%
AGTACATAAACAACGTACGG+AGG - chr1_3:35595329-35595348 None:intergenic 40.0%
TAGAGAGGAAGCAATATGGT+TGG + chr1_3:35595379-35595398 Msa0116580:CDS 40.0%
!!! GGAAGCAATATGGTTGGTTT+TGG + chr1_3:35595385-35595404 Msa0116580:CDS 40.0%
!!! TGGTTTTGGTCATGTCCAAA+TGG + chr1_3:35595399-35595418 Msa0116580:CDS 40.0%
! TTTTGGTCATGTCCAAATGG+TGG + chr1_3:35595402-35595421 Msa0116580:CDS 40.0%
CCTCTAACAAAGCCTTCATT+TGG - chr1_3:35595479-35595498 None:intergenic 40.0%
!! CCAAATGAAGGCTTTGTTAG+AGG + chr1_3:35595476-35595495 Msa0116580:CDS 40.0%
ATGACGATGCTTCTTGTAAG+GGG - chr1_3:35595560-35595579 None:intergenic 40.0%
ATCCACAAACAAGCTAGCAT+TGG - chr1_3:35595983-35596002 None:intergenic 40.0%
TGTTCAGTTTCATCAGGTTC+TGG - chr1_3:35596039-35596058 None:intergenic 40.0%
AAATTACAAAGAGACGCGCT+AGG - chr1_3:35596076-35596095 None:intergenic 40.0%
AAATCCCAATTGTTACTGGC+TGG - chr1_3:35596343-35596362 None:intergenic 40.0%
!!! ATGGTTTTGGGATTCCAAAC+AGG - chr1_3:35596597-35596616 None:intergenic 40.0%
! TGTTTGGAATCCCAAAACCA+TGG + chr1_3:35596596-35596615 Msa0116580:intron 40.0%
! TGTACCATTTTCCAAAGCCA+TGG - chr1_3:35596616-35596635 None:intergenic 40.0%
GATTGTCCAAAACATGGTTG+AGG + chr1_3:35596639-35596658 Msa0116580:intron 40.0%
! GAAATCCCTCAACCATGTTT+TGG - chr1_3:35596648-35596667 None:intergenic 40.0%
GTCTTATAAGTAGGGACACA+TGG - chr1_3:35596724-35596743 None:intergenic 40.0%
TACCCTATTAATAGGGATGG+AGG + chr1_3:35596987-35597006 Msa0116580:intron 40.0%
ACCCTATTAATAGGGATGGA+GGG + chr1_3:35596988-35597007 Msa0116580:intron 40.0%
TCCCTCCATCCCTATTAATA+GGG - chr1_3:35596992-35597011 None:intergenic 40.0%
!! CACTTAGTTTGTAAGGTAGG+TGG + chr1_3:35597032-35597051 Msa0116580:intron 40.0%
!!! TTAGGTTTTGTTTGGGCGAA+AGG + chr1_3:35597173-35597192 Msa0116580:intron 40.0%
AAGGAAGGAAGGAAAATGGA+AGG + chr1_3:35597192-35597211 Msa0116580:intron 40.0%
AGGAAGGAAGGAAAATGGAA+GGG + chr1_3:35597193-35597212 Msa0116580:intron 40.0%
TTGAACTCCTTCATATGGGA+GGG - chr1_3:35597266-35597285 None:intergenic 40.0%
TTTGAACTCCTTCATATGGG+AGG - chr1_3:35597267-35597286 None:intergenic 40.0%
! TATTAGGGGAGGATTTTGGA+GGG + chr1_3:35597292-35597311 Msa0116580:intron 40.0%
TTTGGGAGTTAGGAGAAAGA+GGG - chr1_3:35597493-35597512 None:intergenic 40.0%
! GAAGGATTTGTTTGGGAGTT+AGG - chr1_3:35597503-35597522 None:intergenic 40.0%
CCAATCATTATCCCACTAAG+AGG - chr1_3:35597585-35597604 None:intergenic 40.0%
CCTCTTAGTGGGATAATGAT+TGG + chr1_3:35597582-35597601 Msa0116580:intron 40.0%
CTTAGTGGGATAATGATTGG+TGG + chr1_3:35597585-35597604 Msa0116580:intron 40.0%
! GGATAATGATTGGTGGTTGT+TGG + chr1_3:35597592-35597611 Msa0116580:intron 40.0%
TGAAGATGGATCCAACAGTT+AGG - chr1_3:35597664-35597683 None:intergenic 40.0%
TAACTGTTGGATCCATCTTC+AGG + chr1_3:35597663-35597682 Msa0116580:intron 40.0%
AACTGTTGGATCCATCTTCA+GGG + chr1_3:35597664-35597683 Msa0116580:intron 40.0%
TCAATCCAAATTAAGGAGCC+AGG + chr1_3:35597829-35597848 Msa0116580:CDS 40.0%
CAAGGTTGAGAATACTTCTC+AGG - chr1_3:35597869-35597888 None:intergenic 40.0%
TATCATATGCTTCTAGCCAC+TGG + chr1_3:35597921-35597940 Msa0116580:three_prime_UTR 40.0%
AAAATGTCCATCACAGTCAC+AGG - chr1_3:35598082-35598101 None:intergenic 40.0%
GAGTTTCCTTTACTTCGCAA+AGG + chr1_3:35598152-35598171 Msa0116580:three_prime_UTR 40.0%
AAGAATAACCTAGCTCCCTA+CGG - chr1_3:35598265-35598284 None:intergenic 40.0%
TAGGGAGCTAGGTTATTCTT+GGG + chr1_3:35598265-35598284 Msa0116580:three_prime_UTR 40.0%
AGGTTATTCTTGGGAGTTTC+TGG + chr1_3:35598274-35598293 Msa0116580:three_prime_UTR 40.0%
ACCCTTTACTTTCGTATGAG+AGG - chr1_3:35598356-35598375 None:intergenic 40.0%
ACGAAAGTAAAGGGTTGAAG+TGG + chr1_3:35598361-35598380 Msa0116580:three_prime_UTR 40.0%
! TGTACCTGGTGCCAATGTTT+GGG - chr1_3:35593565-35593584 None:intergenic 45.0%
!! TCAGCTTTTGATTGCTTCGG+AGG - chr1_3:35593730-35593749 None:intergenic 45.0%
TGATGTAGCCAAGAAGCAGA+AGG + chr1_3:35593747-35593766 Msa0116580:CDS 45.0%
! TCTTGTTTGGGATCGGTTCT+GGG - chr1_3:35593862-35593881 None:intergenic 45.0%
! ATCTTGTTTGGGATCGGTTC+TGG - chr1_3:35593863-35593882 None:intergenic 45.0%
CGATCCCAAACAAGATGCAA+AGG + chr1_3:35593867-35593886 Msa0116580:CDS 45.0%
GTAGGCCCTGTTTGGATAAA+CGG + chr1_3:35594198-35594217 Msa0116580:intron 45.0%
GATTAGGAGCCTTTCTGGAT+TGG - chr1_3:35594442-35594461 None:intergenic 45.0%
GGAAGAGAAGGCAAAAGAGA+AGG + chr1_3:35594495-35594514 Msa0116580:CDS 45.0%
TGATTACCAGGTGGGACTTT+AGG - chr1_3:35594556-35594575 None:intergenic 45.0%
TAAAGTGGGTCAGTGTGCTA+AGG + chr1_3:35594886-35594905 Msa0116580:CDS 45.0%
AAAGTGGGTCAGTGTGCTAA+GGG + chr1_3:35594887-35594906 Msa0116580:CDS 45.0%
TACAGTGATAAGCGTGACGA+TGG + chr1_3:35594971-35594990 Msa0116580:CDS 45.0%
AGAGTGGGATCAAGAGACAT+TGG + chr1_3:35595089-35595108 Msa0116580:CDS 45.0%
AGAGACATTGGAGAAAGTGG+TGG + chr1_3:35595101-35595120 Msa0116580:CDS 45.0%
! ACTTTTTGGATGCGGTAGAG+AGG + chr1_3:35595364-35595383 Msa0116580:CDS 45.0%
TATAGACATGCACTTCCACC+TGG + chr1_3:35595438-35595457 Msa0116580:CDS 45.0%
TGAGGAGGAGATTGAAAAGC+AGG + chr1_3:35595521-35595540 Msa0116580:CDS 45.0%
! TAGCCCCTCCTTTTTAATCG+AGG + chr1_3:35595807-35595826 Msa0116580:intron 45.0%
!! GTCCAATGCTAGCTTGTTTG+TGG + chr1_3:35595978-35595997 Msa0116580:CDS 45.0%
!! CATCAGGTTCTGGTTCTCTT+TGG - chr1_3:35596029-35596048 None:intergenic 45.0%
! AATTGTTACTGGCTGGCATG+GGG - chr1_3:35596336-35596355 None:intergenic 45.0%
! CAATTGTTACTGGCTGGCAT+GGG - chr1_3:35596337-35596356 None:intergenic 45.0%
CATGCCAGCCAGTAACAATT+GGG + chr1_3:35596336-35596355 Msa0116580:intron 45.0%
GAATCCCAAAACCATGGCTT+TGG + chr1_3:35596602-35596621 Msa0116580:intron 45.0%
CTCCCTCCATCCCTATTAAT+AGG - chr1_3:35596993-35597012 None:intergenic 45.0%
!!! GTTTTGTTTGGGCGAAAGGA+AGG + chr1_3:35597177-35597196 Msa0116580:intron 45.0%
GCGAAAGGAAGGAAGGAAAA+TGG + chr1_3:35597188-35597207 Msa0116580:intron 45.0%
AAGGGATGATAACCCTTGCA+TGG + chr1_3:35597211-35597230 Msa0116580:intron 45.0%
AGGGATGATAACCCTTGCAT+GGG + chr1_3:35597212-35597231 Msa0116580:intron 45.0%
ATGGGAGGGTCTTAGTTTCA+TGG - chr1_3:35597252-35597271 None:intergenic 45.0%
ACTAAGACCCTCCCATATGA+AGG + chr1_3:35597256-35597275 Msa0116580:intron 45.0%
! GTATTAGGGGAGGATTTTGG+AGG + chr1_3:35597291-35597310 Msa0116580:intron 45.0%
TTGGGAGTTAGGAGAAAGAG+GGG - chr1_3:35597492-35597511 None:intergenic 45.0%
GTTTGGGAGTTAGGAGAAAG+AGG - chr1_3:35597494-35597513 None:intergenic 45.0%
ACTGTTGGATCCATCTTCAG+GGG + chr1_3:35597665-35597684 Msa0116580:intron 45.0%
!! ACTGGGAGTGCTGCTAATAA+TGG + chr1_3:35597688-35597707 Msa0116580:CDS 45.0%
ATCGTCGTCGTCAATGTCAT+CGG - chr1_3:35597755-35597774 None:intergenic 45.0%
TGACGACGACGATGATGAAT+TGG + chr1_3:35597762-35597781 Msa0116580:CDS 45.0%
CGACGATGATGAATTGGACT+TGG + chr1_3:35597768-35597787 Msa0116580:CDS 45.0%
! CTTGGACGAGTTGAATGAAC+TGG + chr1_3:35597786-35597805 Msa0116580:CDS 45.0%
AAGCAGCCTTTGCGAAGTAA+AGG - chr1_3:35598161-35598180 None:intergenic 45.0%
ACACAACACTTTAGCAGTGG+TGG - chr1_3:35598217-35598236 None:intergenic 45.0%
ATATATGTCCGTAGGGAGCT+AGG + chr1_3:35598254-35598273 Msa0116580:three_prime_UTR 45.0%
GTAGGGAGCTAGGTTATTCT+TGG + chr1_3:35598264-35598283 Msa0116580:three_prime_UTR 45.0%
!! ATAAATATTATAAATAAAAG+AGG - chr1_3:35597344-35597363 None:intergenic 5.0%
CTAACCCAAACATTGGCACC+AGG + chr1_3:35593558-35593577 Msa0116580:five_prime_UTR 50.0%
! GTGTACCTGGTGCCAATGTT+TGG - chr1_3:35593566-35593585 None:intergenic 50.0%
! TTCAACCGGGTTTTCTGCGT+AGG + chr1_3:35594180-35594199 Msa0116580:intron 50.0%
! TTTTCTGCGTAGGCCCTGTT+TGG + chr1_3:35594190-35594209 Msa0116580:intron 50.0%
GCGGTAGAGAGGAAGCAATA+TGG + chr1_3:35595375-35595394 Msa0116580:CDS 50.0%
GGGCTAAGAATGACCGTATG+AGG + chr1_3:35595736-35595755 Msa0116580:CDS 50.0%
!!! TGAAGGGGCTGCGTGTTTTT+TGG + chr1_3:35595843-35595862 Msa0116580:intron 50.0%
! CCAATTGTTACTGGCTGGCA+TGG - chr1_3:35596338-35596357 None:intergenic 50.0%
CCATGCCAGCCAGTAACAAT+TGG + chr1_3:35596335-35596354 Msa0116580:intron 50.0%
TGTTTGGGCGAAAGGAAGGA+AGG + chr1_3:35597181-35597200 Msa0116580:intron 50.0%
GGGATGATAACCCTTGCATG+GGG + chr1_3:35597213-35597232 Msa0116580:intron 50.0%
GGATGATAACCCTTGCATGG+GGG + chr1_3:35597214-35597233 Msa0116580:intron 50.0%
GATGATAACCCTTGCATGGG+GGG + chr1_3:35597215-35597234 Msa0116580:intron 50.0%
AGAACAAACCCCCCATGCAA+GGG - chr1_3:35597226-35597245 None:intergenic 50.0%
AAGAACAAACCCCCCATGCA+AGG - chr1_3:35597227-35597246 None:intergenic 50.0%
TTAGGAGAAAGAGGGGGGAA+GGG - chr1_3:35597485-35597504 None:intergenic 50.0%
TGGGAGTTAGGAGAAAGAGG+GGG - chr1_3:35597491-35597510 None:intergenic 50.0%
ATGTAGCTGACCCCTCTTAG+TGG + chr1_3:35597570-35597589 Msa0116580:intron 50.0%
TGTAGCTGACCCCTCTTAGT+GGG + chr1_3:35597571-35597590 Msa0116580:intron 50.0%
TCGTCGTCGTCAATGTCATC+GGG - chr1_3:35597754-35597773 None:intergenic 50.0%
CAGCTCCTGGCTCCTTAATT+TGG - chr1_3:35597837-35597856 None:intergenic 50.0%
CAGGATTAAGCTTCAGCTCC+TGG - chr1_3:35597850-35597869 None:intergenic 50.0%
TCGAATGCAAGGAATGCCAG+TGG - chr1_3:35597940-35597959 None:intergenic 50.0%
ACTGGCATTCCTTGCATTCG+AGG + chr1_3:35597939-35597958 Msa0116580:three_prime_UTR 50.0%
TCTGTAGTTCGGTCCCTCAT+TGG + chr1_3:35598055-35598074 Msa0116580:three_prime_UTR 50.0%
CACAGTCACAGGTCCAATGA+GGG - chr1_3:35598071-35598090 None:intergenic 50.0%
TCACAGTCACAGGTCCAATG+AGG - chr1_3:35598072-35598091 None:intergenic 50.0%
CATTGGACCTGTGACTGTGA+TGG + chr1_3:35598072-35598091 Msa0116580:three_prime_UTR 50.0%
GGTGTGTGTGTGTGTGTACC+TGG - chr1_3:35593579-35593598 None:intergenic 55.0%
!! GCTTCGGAGGCATCTCGTAT+CGG - chr1_3:35593717-35593736 None:intergenic 55.0%
!! GGGATCGGTTCTGGGTTGAA+CGG - chr1_3:35593854-35593873 None:intergenic 55.0%
AGTCAGCCTAAAGTCCCACC+TGG + chr1_3:35594547-35594566 Msa0116580:CDS 55.0%
GGACGAGAGAGATGCCAGTT+TGG + chr1_3:35595695-35595714 Msa0116580:CDS 55.0%
CTTAGCCCTCTCTGCCTGTT+GGG - chr1_3:35595724-35595743 None:intergenic 55.0%
TCTTAGCCCTCTCTGCCTGT+TGG - chr1_3:35595725-35595744 None:intergenic 55.0%
GTTAGGAGAAAGAGGGGGGA+AGG - chr1_3:35597486-35597505 None:intergenic 55.0%
GGGAGTTAGGAGAAAGAGGG+GGG - chr1_3:35597490-35597509 None:intergenic 55.0%
TGGATCCATCTTCAGGGGAC+TGG + chr1_3:35597670-35597689 Msa0116580:intron 55.0%
GGATCCATCTTCAGGGGACT+GGG + chr1_3:35597671-35597690 Msa0116580:intron 55.0%
CAGGGCCTACGCAGAAAACC+CGG - chr1_3:35594188-35594207 None:intergenic 60.0%
TGCCAGTTTGGCTGCCCAAC+AGG + chr1_3:35595707-35595726 Msa0116580:CDS 60.0%
TGCCTGTTGGGCAGCCAAAC+TGG - chr1_3:35595712-35595731 None:intergenic 60.0%
AGAGGGGGGAAGGGTAGTGA+GGG - chr1_3:35597476-35597495 None:intergenic 60.0%
AAGAGGGGGGAAGGGTAGTG+AGG - chr1_3:35597477-35597496 None:intergenic 60.0%
CACTCCCAGTCCCCTGAAGA+TGG - chr1_3:35597678-35597697 None:intergenic 60.0%
! CCACCTGTTGCTGAGGTGCT+GGG - chr1_3:35597715-35597734 None:intergenic 60.0%
ACCACCTGTTGCTGAGGTGC+TGG - chr1_3:35597716-35597735 None:intergenic 60.0%
GTCTGCACCACCTGTTGCTG+AGG - chr1_3:35597722-35597741 None:intergenic 60.0%
TGGCTGCCCAACAGGCAGAG+AGG + chr1_3:35595715-35595734 Msa0116580:CDS 65.0%
GGCTGCCCAACAGGCAGAGA+GGG + chr1_3:35595716-35595735 Msa0116580:CDS 65.0%
GGGGAAGGGTAGTGAGGGAG+GGG - chr1_3:35597471-35597490 None:intergenic 65.0%
GGGGGAAGGGTAGTGAGGGA+GGG - chr1_3:35597472-35597491 None:intergenic 65.0%
GGTCCCAGCACCTCAGCAAC+AGG + chr1_3:35597709-35597728 Msa0116580:CDS 65.0%
CCCAGCACCTCAGCAACAGG+TGG + chr1_3:35597712-35597731 Msa0116580:CDS 65.0%
GGGGGGAAGGGTAGTGAGGG+AGG - chr1_3:35597473-35597492 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35593486 35598574 35593486 ID=Msa0116580;Name=Msa0116580
chr1_3 mRNA 35593486 35598574 35593486 ID=Msa0116580-mRNA-1;Parent=Msa0116580;Name=Msa0116580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=238|1|1|1|1|1|8|710|360
chr1_3 exon 35593486 35593888 35593486 ID=Msa0116580-mRNA-1:exon:11478;Parent=Msa0116580-mRNA-1
chr1_3 exon 35594484 35594568 35594484 ID=Msa0116580-mRNA-1:exon:11479;Parent=Msa0116580-mRNA-1
chr1_3 exon 35594852 35594992 35594852 ID=Msa0116580-mRNA-1:exon:11480;Parent=Msa0116580-mRNA-1
chr1_3 exon 35595079 35595167 35595079 ID=Msa0116580-mRNA-1:exon:11481;Parent=Msa0116580-mRNA-1
chr1_3 exon 35595354 35595542 35595354 ID=Msa0116580-mRNA-1:exon:11482;Parent=Msa0116580-mRNA-1
chr1_3 exon 35595627 35595757 35595627 ID=Msa0116580-mRNA-1:exon:11483;Parent=Msa0116580-mRNA-1
chr1_3 exon 35595960 35596062 35595960 ID=Msa0116580-mRNA-1:exon:11484;Parent=Msa0116580-mRNA-1
chr1_3 exon 35597685 35598574 35597685 ID=Msa0116580-mRNA-1:exon:11485;Parent=Msa0116580-mRNA-1
chr1_3 five_prime_UTR 35593486 35593723 35593486 ID=Msa0116580-mRNA-1:five_prime_utr;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35593724 35593888 35593724 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35594484 35594568 35594484 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35594852 35594992 35594852 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35595079 35595167 35595079 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35595354 35595542 35595354 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35595627 35595757 35595627 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35595960 35596062 35595960 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 CDS 35597685 35597864 35597685 ID=Msa0116580-mRNA-1:cds;Parent=Msa0116580-mRNA-1
chr1_3 three_prime_UTR 35597865 35598574 35597865 ID=Msa0116580-mRNA-1:three_prime_utr;Parent=Msa0116580-mRNA-1
Gene Sequence

>Msa0116580

ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCCAAGAAGCAGAAGGTTGTTGAAGACAAAACTTTTGGTCTCAAAAACAAAAACAAAAGCAAAGCTGTTCAGAAATATGTTCAGAATCTCAAATCTTCCGTTCAACCCAGAACCGATCCCAAACAAGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCAAAAGAGAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCACCTGGTGTTGATCCCAAATCCGTATTATGTGAGTTTTTTAAAGTGGGTCAGTGTGCTAAGGGATTCAAATGCAAATTCTCTCATGATTTGAATGTTCAGAGGAAAGGGGAGAAGATTGACATATACAGTGATAAGCGTGACGATGATACAATGGAAGAGTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAATCAGAACAAACCAACAGATATTGTATGCAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGTCATGTCCAAATGGTGGTAAGAATTGTATCTATAGACATGCACTTCCACCTGGATATGTTCTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAATCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTTCCCAAGTGAAAACTACAACTCCTATAACTACTGAGTTGTTCTATCAATGGAAGAAGAAAAAAATGGACGAGAGAGATGCCAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCCAATGCTAGCTTGTTTGTGGATGATGCTGAAGCATACGACAACTACCAAAGAGAACCAGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAACAGGTGGTGCAGACGATGAACTTCCCGATGACATTGACGACGACGATGATGAATTGGACTTGGACGAGTTGAATGAACTGGAAGCAAGTTTAGCCAAGACATCAATCCAAATTAAGGAGCCAGGAGCTGAAGCTTAA
Protein sequence

>Msa0116580

MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPRTDPKQDAKKKKEEEKAKEKELNDLFKIAVSQPKVPPGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDDTMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVERKQYGWFWSCPNGGKNCIYRHALPPGYVLKSQMKALLEEESDKMPIEEEIEKQRSQVKTTTPITTELFYQWKKKKMDERDASLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYDNYQREPEPDETEQNGTGSAANNGPSTSATGGADDELPDDIDDDDDELDLDELNELEASLAKTSIQIKEPGAEA*