Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166780 | XP_024634514.1 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 855 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166780 | sp|Q9LZ03|TOP6A_ARATH | 83.981 | 412 | 57 | 1 | 15 | 417 | 16 | 427 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166780 | A0A396JUG2 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 855 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021320 | Msa0166780 | 0.815842 | 7.513568e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166780 | MtrunA17_Chr1g0181791 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 855 |
| Msa0166780 | MtrunA17_Chr5g0397191 | 33.537 | 328 | 204 | 8 | 98 | 417 | 95 | 416 | 2.02e-59 | 199 |
| Msa0166780 | MtrunA17_Chr5g0438521 | 45.631 | 206 | 111 | 1 | 169 | 373 | 124 | 329 | 3.18e-54 | 183 |
| Msa0166780 | MtrunA17_Chr5g0445951 | 29.771 | 262 | 120 | 4 | 199 | 412 | 33 | 278 | 8.58e-32 | 122 |
| Msa0166780 | MtrunA17_Chr5g0446011 | 33.514 | 185 | 82 | 2 | 269 | 412 | 54 | 238 | 4.00e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0166780 | AT5G02820.1 | 83.981 | 412 | 57 | 1 | 15 | 417 | 16 | 427 | 0.0 | 712 |
| Msa0166780 | AT3G13170.1 | 39.809 | 314 | 179 | 3 | 108 | 414 | 48 | 358 | 1.56e-70 | 226 |
| Msa0166780 | AT1G63990.1 | 33.537 | 328 | 204 | 8 | 98 | 417 | 62 | 383 | 7.25e-60 | 199 |
| Msa0166780 | AT3G13170.2 | 39.548 | 177 | 107 | 0 | 138 | 314 | 81 | 257 | 1.71e-37 | 137 |
| Msa0166780 | AT3G13170.3 | 39.548 | 177 | 107 | 0 | 138 | 314 | 81 | 257 | 1.71e-37 | 137 |
| Msa0166780 | AT1G63990.2 | 33.493 | 209 | 131 | 4 | 98 | 298 | 62 | 270 | 7.77e-35 | 130 |
Find 148 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGAAGCCTGAGTGTTTA+TGG | 0.126836 | 1_4:-48360207 | Msa0166780:three_prime_UTR |
| TTGAAGATTCTATCGGTTTA+TGG | 0.162339 | 1_4:-48360803 | Msa0166780:CDS |
| ATTCATCAGCTTTGTCTTAA+AGG | 0.165138 | 1_4:-48362438 | Msa0166780:CDS |
| TCCCCAACTCGGTCAATATT+TGG | 0.241069 | 1_4:+48361034 | None:intergenic |
| TCCATAAACACTCAGGCTTC+TGG | 0.272457 | 1_4:+48360206 | None:intergenic |
| TATGATTGACTGCACCAAAA+TGG | 0.272841 | 1_4:-48361080 | Msa0166780:CDS |
| CGCCAAATATTGACCGAGTT+GGG | 0.274322 | 1_4:-48361036 | Msa0166780:CDS |
| ACCCCTAGCCACTTAATATC+AGG | 0.295988 | 1_4:+48360734 | None:intergenic |
| ATTCGTCCTTTCGCGAATAT+TGG | 0.303010 | 1_4:-48362504 | Msa0166780:CDS |
| GTGAGAGTTCGTCGAGGGTT+AGG | 0.311404 | 1_4:+48362721 | None:intergenic |
| TTCGTCGAGGGTTAGGGTTT+TGG | 0.320168 | 1_4:+48362728 | None:intergenic |
| AGGGGTTAGGCCTAGTGATT+TGG | 0.323299 | 1_4:-48360717 | Msa0166780:CDS |
| TTCATCAGCTTTGTCTTAAA+GGG | 0.328026 | 1_4:-48362437 | Msa0166780:CDS |
| TTCGTCCTTTCGCGAATATT+GGG | 0.332284 | 1_4:-48362503 | Msa0166780:CDS |
| TACTGATGTTAAGCTCTTCC+AGG | 0.340553 | 1_4:-48362385 | Msa0166780:CDS |
| GATGCAATCTGACACGGTTC+TGG | 0.342688 | 1_4:-48361206 | Msa0166780:CDS |
| GCCTCAACCGCATCTTCTTC+CGG | 0.342813 | 1_4:-48362753 | Msa0166780:CDS |
| TGAAGATTCTATCGGTTTAT+GGG | 0.352505 | 1_4:-48360802 | Msa0166780:CDS |
| ATGATTGACTGCACCAAAAT+GGG | 0.363708 | 1_4:-48361079 | Msa0166780:CDS |
| ATACAGGCTTTGAGCACCTT+TGG | 0.376431 | 1_4:-48360542 | Msa0166780:CDS |
| CACTCTATCCTCGCTGGTAA+TGG | 0.382536 | 1_4:-48362615 | Msa0166780:CDS |
| TTCTGTTGTAAGTCACGTTA+TGG | 0.385364 | 1_4:-48360321 | Msa0166780:three_prime_UTR |
| AGAACAATCCGGTCAAGTTC+AGG | 0.393447 | 1_4:+48362543 | None:intergenic |
| AACGTTGTTGCGGCGGAGAA+AGG | 0.397049 | 1_4:-48361142 | Msa0166780:CDS |
| ATTCTATCGGTTTATGGGTG+TGG | 0.398853 | 1_4:-48360797 | Msa0166780:CDS |
| ATATGAGGTTGGCTGAAGAT+AGG | 0.402619 | 1_4:-48360961 | Msa0166780:CDS |
| GCGGAGAAAGGGGTGGTTGT+AGG | 0.404802 | 1_4:-48361130 | Msa0166780:CDS |
| ATATTAAGTGGCTAGGGGTT+AGG | 0.407669 | 1_4:-48360730 | Msa0166780:CDS |
| GCCCTTGAAATTGCAGCAGC+AGG | 0.412922 | 1_4:-48360492 | Msa0166780:CDS |
| TGTTAAGCTCTTCCAGGATC+AGG | 0.413647 | 1_4:-48362379 | Msa0166780:intron |
| CGCGCTGTTCATTCTCTTGG+TGG | 0.418172 | 1_4:-48360999 | Msa0166780:CDS |
| TAAGCAGAAGGCTGAGATAC+AGG | 0.422038 | 1_4:-48360558 | Msa0166780:CDS |
| CCCCTGATATTAAGTGGCTA+GGG | 0.427834 | 1_4:-48360736 | Msa0166780:CDS |
| GATGATGTTTCATGCATGTT+GGG | 0.430048 | 1_4:-48361184 | Msa0166780:CDS |
| TGACGCGCTGTTCATTCTCT+TGG | 0.432884 | 1_4:-48361002 | Msa0166780:CDS |
| TTAATATCCTGCTCGGTCAT+TGG | 0.435275 | 1_4:+48360662 | None:intergenic |
| TTTGAGGATTTCGAGGATGA+TGG | 0.438355 | 1_4:+48362785 | None:intergenic |
| ATCCTGCTGCTGCAATTTCA+AGG | 0.438402 | 1_4:+48360490 | None:intergenic |
| ACAAGATACCGGAGCAGTGC+AGG | 0.440945 | 1_4:-48360688 | Msa0166780:CDS |
| CTGAAGATAGGTTCTACAAC+AGG | 0.441386 | 1_4:-48360949 | Msa0166780:CDS |
| ATTTCGAGGATGATGGAGTC+TGG | 0.442313 | 1_4:+48362792 | None:intergenic |
| TGAGAGTTCGTCGAGGGTTA+GGG | 0.445219 | 1_4:+48362722 | None:intergenic |
| TGCATAATCGTGACGGCGAA+GGG | 0.445491 | 1_4:-48360920 | Msa0166780:CDS |
| CGCTACTTCGCGGCAGGTGA+AGG | 0.446632 | 1_4:+48362695 | None:intergenic |
| TGAAATTGCAGCAGCAGGAT+TGG | 0.447287 | 1_4:-48360487 | Msa0166780:CDS |
| CTGTCCACAAGCGCGAGAAC+TGG | 0.451063 | 1_4:+48360839 | None:intergenic |
| CTTCTGGATATTGTTGAAGT+TGG | 0.452425 | 1_4:+48360222 | None:intergenic |
| ACGTTGTTGCGGCGGAGAAA+GGG | 0.457683 | 1_4:-48361141 | Msa0166780:CDS |
| GGATGATGTTTCATGCATGT+TGG | 0.462768 | 1_4:-48361185 | Msa0166780:CDS |
| TGCTGGAGGTGTGTGAGTGT+GGG | 0.462988 | 1_4:+48362894 | None:intergenic |
| AAGGGGAGGATTTCGTCGGT+TGG | 0.471794 | 1_4:+48362831 | None:intergenic |
| CGTGACGGCGAAGGGGCAGC+CGG | 0.474703 | 1_4:-48360912 | Msa0166780:CDS |
| GTTCATTCTCTTGGTGGAGA+AGG | 0.477468 | 1_4:-48360993 | Msa0166780:CDS |
| ATGAATAAGCTGAATAATCC+TGG | 0.479798 | 1_4:+48362455 | None:intergenic |
| GACTGCACCAAAATGGGGAT+GGG | 0.480616 | 1_4:-48361073 | Msa0166780:CDS |
| TTCTATCGGTTTATGGGTGT+GGG | 0.483982 | 1_4:-48360796 | Msa0166780:CDS |
| AACAGCCTCGTCGAAACATC+CGG | 0.492221 | 1_4:+48360893 | None:intergenic |
| ATATTTAAGAATTTAGATGC+TGG | 0.494112 | 1_4:-48360450 | Msa0166780:three_prime_UTR |
| CCGCCAAATATTGACCGAGT+TGG | 0.497827 | 1_4:-48361037 | Msa0166780:CDS |
| TGTCTGCCATTGATGGATGC+TGG | 0.498234 | 1_4:+48362877 | None:intergenic |
| TTTATGTTCCTGAACTTGAC+CGG | 0.502463 | 1_4:-48362551 | Msa0166780:CDS |
| ATTGGCAGCCTGCACTGCTC+CGG | 0.506556 | 1_4:+48360680 | None:intergenic |
| AGAAAGGGGTGGTTGTAGGA+AGG | 0.507310 | 1_4:-48361126 | Msa0166780:CDS |
| GTGCATAATCGTGACGGCGA+AGG | 0.509150 | 1_4:-48360921 | Msa0166780:CDS |
| TGACTACCCCTGATATTAAG+TGG | 0.511737 | 1_4:-48360742 | Msa0166780:CDS |
| ACAAGAACAAAACCTGATCC+TGG | 0.513362 | 1_4:+48362367 | None:intergenic |
| TGGAGGTGTGTGAGTGTGGG+CGG | 0.513518 | 1_4:+48362897 | None:intergenic |
| GAAGAATCCTGGTTGGGTTG+AGG | 0.514047 | 1_4:-48360603 | Msa0166780:CDS |
| GGAGGTGTGTGAGTGTGGGC+GGG | 0.514792 | 1_4:+48362898 | None:intergenic |
| GTTGCCAGTTCTCGCGCTTG+TGG | 0.515247 | 1_4:-48360843 | Msa0166780:CDS |
| TCCGGAAGAAGATGCGGTTG+AGG | 0.516716 | 1_4:+48362752 | None:intergenic |
| TGTGAAGAAGAATCCTGGTT+GGG | 0.517615 | 1_4:-48360609 | Msa0166780:CDS |
| GATAGAATCTTCAATCCGTA+AGG | 0.520930 | 1_4:+48360812 | None:intergenic |
| ACCGAGCAGGATATTAAGAC+TGG | 0.522752 | 1_4:-48360656 | Msa0166780:CDS |
| ATGCTGGAGGTGTGTGAGTG+TGG | 0.528173 | 1_4:+48362893 | None:intergenic |
| CTGCACCAAAATGGGGATGG+GGG | 0.528605 | 1_4:-48361071 | Msa0166780:CDS |
| GATTCGCAGCAGAACGAGAC+GGG | 0.529022 | 1_4:+48362577 | None:intergenic |
| GGTTGAGGAACTGACATTGA+TGG | 0.530389 | 1_4:-48360588 | Msa0166780:CDS |
| GTTGGTCATGTGTTTACTGA+TGG | 0.533670 | 1_4:+48360240 | None:intergenic |
| ACTGCACCAAAATGGGGATG+GGG | 0.534550 | 1_4:-48361072 | Msa0166780:CDS |
| GAGATCCGCTACTTCGCGGC+AGG | 0.537627 | 1_4:+48362689 | None:intergenic |
| CCCCTAGCCACTTAATATCA+GGG | 0.540293 | 1_4:+48360735 | None:intergenic |
| TTTCGTCGGTTGGTTCTGTA+CGG | 0.542337 | 1_4:+48362841 | None:intergenic |
| GTCAGTTCCTCAACCCAACC+AGG | 0.542735 | 1_4:+48360596 | None:intergenic |
| GCCAAATATTGACCGAGTTG+GGG | 0.543406 | 1_4:-48361035 | Msa0166780:CDS |
| ACCCCTGATATTAAGTGGCT+AGG | 0.544777 | 1_4:-48360737 | Msa0166780:CDS |
| TCCAGTCTTAATATCCTGCT+CGG | 0.544847 | 1_4:+48360655 | None:intergenic |
| ATCGCTCACTCTATCCTCGC+TGG | 0.547143 | 1_4:-48362621 | Msa0166780:CDS |
| ACACCTCCAGCATCCATCAA+TGG | 0.551292 | 1_4:-48362883 | Msa0166780:exon |
| CTTCACCTGCCGCGAAGTAG+CGG | 0.551439 | 1_4:-48362694 | Msa0166780:CDS |
| GTTCTTGAGGAAGATGAAGA+TGG | 0.552392 | 1_4:-48360873 | Msa0166780:CDS |
| CGTTGTTGCGGCGGAGAAAG+GGG | 0.554658 | 1_4:-48361140 | Msa0166780:CDS |
| TTACGGATTGAAGATTCTAT+CGG | 0.556435 | 1_4:-48360810 | Msa0166780:CDS |
| TTCAAGCCTCAACGTTGTTG+CGG | 0.559251 | 1_4:-48361152 | Msa0166780:CDS |
| TGACTGCACCAAAATGGGGA+TGG | 0.560734 | 1_4:-48361074 | Msa0166780:CDS |
| GAGAACGAGAGATTCGATGT+TGG | 0.561893 | 1_4:+48362647 | None:intergenic |
| CAGGCTGCCAATGACCGAGC+AGG | 0.563038 | 1_4:-48360669 | Msa0166780:CDS |
| ATTTGTCCTTGAGAACAATC+CGG | 0.563282 | 1_4:+48362532 | None:intergenic |
| TTTCGACGAGGCTGTTCTTG+AGG | 0.565518 | 1_4:-48360886 | Msa0166780:CDS |
| TTTGAAGGGGAGGATTTCGT+CGG | 0.567861 | 1_4:+48362827 | None:intergenic |
| ACTTGACCGGATTGTTCTCA+AGG | 0.568299 | 1_4:-48362538 | Msa0166780:CDS |
| GGACGCAGCTTATATGAGGT+TGG | 0.568577 | 1_4:-48360972 | Msa0166780:CDS |
| GGGAGAGATCCGCTACTTCG+CGG | 0.569666 | 1_4:+48362685 | None:intergenic |
| GGAAAACTGCTATTACTGCC+AGG | 0.571581 | 1_4:-48362473 | Msa0166780:CDS |
| GTTGGATTGAACAGAGGAGA+GGG | 0.574952 | 1_4:+48362665 | None:intergenic |
| CACTCTGCATATCCCCAACT+CGG | 0.576207 | 1_4:+48361023 | None:intergenic |
| GACTGGAAAGGACATGTTGG+AGG | 0.576800 | 1_4:-48360639 | Msa0166780:CDS |
| AAGCCTCAACGTTGTTGCGG+CGG | 0.580936 | 1_4:-48361149 | Msa0166780:CDS |
| GCTACTTCGCGGCAGGTGAA+GGG | 0.581561 | 1_4:+48362696 | None:intergenic |
| TAAGACTGGAAAGGACATGT+TGG | 0.584721 | 1_4:-48360642 | Msa0166780:CDS |
| TCCTGCTGCTGCAATTTCAA+GGG | 0.584774 | 1_4:+48360491 | None:intergenic |
| TCTCCGCCGCAACAACGTTG+AGG | 0.587650 | 1_4:+48361146 | None:intergenic |
| CAACAATTTACAGTGGAATG+AGG | 0.589715 | 1_4:-48360383 | Msa0166780:three_prime_UTR |
| AGAAGGACGCAGCTTATATG+AGG | 0.592803 | 1_4:-48360976 | Msa0166780:CDS |
| AGAGAGATATTGAAAACCAA+AGG | 0.602952 | 1_4:+48360526 | None:intergenic |
| TTGTACTTGTCCAAATCACT+AGG | 0.606074 | 1_4:+48360707 | None:intergenic |
| TTTGGTTCCGGAAGAAGATG+CGG | 0.606729 | 1_4:+48362746 | None:intergenic |
| TTGTGAAGAAGAATCCTGGT+TGG | 0.609900 | 1_4:-48360610 | Msa0166780:CDS |
| TTTGGACAAGTACAAGATAC+CGG | 0.609938 | 1_4:-48360699 | Msa0166780:CDS |
| GCGGGAAAGTGATTCTGTGA+TGG | 0.610053 | 1_4:+48362916 | None:intergenic |
| TGTTGCGGCGGAGAAAGGGG+TGG | 0.611276 | 1_4:-48361137 | Msa0166780:CDS |
| TGCACCAAAATGGGGATGGG+GGG | 0.611378 | 1_4:-48361070 | Msa0166780:CDS |
| CTTGTGGACAGTGACCCTTA+CGG | 0.618260 | 1_4:-48360827 | Msa0166780:CDS |
| CCAACTCGGTCAATATTTGG+CGG | 0.623363 | 1_4:+48361037 | None:intergenic |
| GATGGTTAAGACTAAGCAGA+AGG | 0.623914 | 1_4:-48360570 | Msa0166780:CDS |
| CGTCGGTTGGTTCTGTACGG+CGG | 0.630343 | 1_4:+48362844 | None:intergenic |
| CCCTAGCCACTTAATATCAG+GGG | 0.633916 | 1_4:+48360736 | None:intergenic |
| GCAGGATATTAAGACTGGAA+AGG | 0.636659 | 1_4:-48360651 | Msa0166780:CDS |
| GGGAAGTGAGAGTTCGTCGA+GGG | 0.637315 | 1_4:+48362716 | None:intergenic |
| TTCGATGTTGGATTGAACAG+AGG | 0.638036 | 1_4:+48362659 | None:intergenic |
| CCCTGATATTAAGTGGCTAG+GGG | 0.641428 | 1_4:-48360735 | Msa0166780:CDS |
| ACAGTCCCAATATTCGCGAA+AGG | 0.644325 | 1_4:+48362498 | None:intergenic |
| TTCGCCGTCACGATTATGCA+CGG | 0.646868 | 1_4:+48360923 | None:intergenic |
| GAATCAGATGCAATCTGACA+CGG | 0.649433 | 1_4:-48361212 | Msa0166780:intron |
| CAAGCAATCCATAAACACTC+AGG | 0.649789 | 1_4:+48360199 | None:intergenic |
| TGATTCGCAGCAGAACGAGA+CGG | 0.655567 | 1_4:+48362576 | None:intergenic |
| ATAGAATCTTCAATCCGTAA+GGG | 0.661174 | 1_4:+48360813 | None:intergenic |
| GCATAATCGTGACGGCGAAG+GGG | 0.662282 | 1_4:-48360919 | Msa0166780:CDS |
| TGTTGGATTGAACAGAGGAG+AGG | 0.664070 | 1_4:+48362664 | None:intergenic |
| CTGCCATTGATGGATGCTGG+AGG | 0.680388 | 1_4:+48362880 | None:intergenic |
| TCGCGAATATTGGGACTGTG+AGG | 0.683903 | 1_4:-48362494 | Msa0166780:CDS |
| TGATTGACTGCACCAAAATG+GGG | 0.696978 | 1_4:-48361078 | Msa0166780:CDS |
| GTTTCCGTGCATAATCGTGA+CGG | 0.698991 | 1_4:-48360927 | Msa0166780:CDS |
| AGTCAAGTGAGAGCTATCGT+AGG | 0.701267 | 1_4:+48360760 | None:intergenic |
| TCTGCAGCAACAATTTACAG+TGG | 0.716649 | 1_4:-48360390 | Msa0166780:three_prime_UTR |
| ATGCGAATCCATTACCAGCG+AGG | 0.722604 | 1_4:+48362607 | None:intergenic |
| GGCAGCCGGATGTTTCGACG+AGG | 0.739177 | 1_4:-48360898 | Msa0166780:CDS |
| AGGGAAGTGAGAGTTCGTCG+AGG | 0.743719 | 1_4:+48362715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATTTAGTATTACTT+TGG | - | chr1_4:48360818-48360837 | Msa0166780:CDS | 10.0% |
| !! | TTTAAATTTAGTATTACTTT+GGG | - | chr1_4:48360819-48360838 | Msa0166780:CDS | 10.0% |
| !! | TAATTACATAAATATATGTT+TGG | - | chr1_4:48361254-48361273 | Msa0166780:intron | 10.0% |
| !!! | TTATTATGATTTTATTTTGT+TGG | - | chr1_4:48361853-48361872 | Msa0166780:intron | 10.0% |
| !!! | TTTGATTTGATATTATATGA+TGG | - | chr1_4:48360909-48360928 | Msa0166780:CDS | 15.0% |
| !! | TACTAGATAAAATGAAAATT+AGG | - | chr1_4:48361159-48361178 | Msa0166780:CDS | 15.0% |
| !! | TTAAAAGTTGTTGTATATAT+AGG | + | chr1_4:48361369-48361388 | None:intergenic | 15.0% |
| !!! | ATTTTTAACAAGGATAATTT+AGG | - | chr1_4:48361681-48361700 | Msa0166780:intron | 15.0% |
| !!! | ATTTTAACAAAAAAAACTGA+GGG | - | chr1_4:48361704-48361723 | Msa0166780:intron | 15.0% |
| !!! | CCATTTTCTTAAATTATCAT+TGG | + | chr1_4:48360995-48361014 | None:intergenic | 20.0% |
| !! | CCAATGATAATTTAAGAAAA+TGG | - | chr1_4:48360992-48361011 | Msa0166780:CDS | 20.0% |
| !! | AAAATGAAAATTAGGTACTT+AGG | - | chr1_4:48361167-48361186 | Msa0166780:CDS | 20.0% |
| !! | AAATGAAAATTAGGTACTTA+GGG | - | chr1_4:48361168-48361187 | Msa0166780:CDS | 20.0% |
| !!! | AAGAGAAACATGTTTTTAAA+AGG | + | chr1_4:48361324-48361343 | None:intergenic | 20.0% |
| !! | CTTGTTAAAAATAACTTACT+AGG | + | chr1_4:48361673-48361692 | None:intergenic | 20.0% |
| !!! | CTAGTAAGTTATTTTTAACA+AGG | - | chr1_4:48361671-48361690 | Msa0166780:intron | 20.0% |
| !!! | GATTTTAACAAAAAAAACTG+AGG | - | chr1_4:48361703-48361722 | Msa0166780:intron | 20.0% |
| !!! | GAAGACATTTAAAGTTATTT+AGG | + | chr1_4:48361891-48361910 | None:intergenic | 20.0% |
| !! | ATATTTAAGAATTTAGATGC+TGG | - | chr1_4:48362711-48362730 | Msa0166780:CDS | 20.0% |
| !!! | AAGATACTGAACAATTTTTA+TGG | + | chr1_4:48362822-48362841 | None:intergenic | 20.0% |
| !!! | GATATTATATGATGGATGAT+TGG | - | chr1_4:48360917-48360936 | Msa0166780:CDS | 25.0% |
| !! | ATATATGTTTGGTTCAAAAG+TGG | - | chr1_4:48361265-48361284 | Msa0166780:intron | 25.0% |
| ! | TAATTGAACATTGCAATTAG+TGG | - | chr1_4:48361442-48361461 | Msa0166780:intron | 25.0% |
| ! | AGATTCACAATTAAATTCAG+TGG | + | chr1_4:48361566-48361585 | None:intergenic | 25.0% |
| ! | AAACTGAACGAAATTGAAAA+CGG | - | chr1_4:48361635-48361654 | Msa0166780:intron | 25.0% |
| !!! | GTTTGAGTTTGTTTTTGAAG+GGG | + | chr1_4:48360350-48360369 | None:intergenic | 30.0% |
| !!! | GGTTTGAGTTTGTTTTTGAA+GGG | + | chr1_4:48360351-48360370 | None:intergenic | 30.0% |
| !!! | TGGTTTGAGTTTGTTTTTGA+AGG | + | chr1_4:48360352-48360371 | None:intergenic | 30.0% |
| ATGAATAAGCTGAATAATCC+TGG | + | chr1_4:48360709-48360728 | None:intergenic | 30.0% | |
| ! | ATTCATCAGCTTTGTCTTAA+AGG | - | chr1_4:48360723-48360742 | Msa0166780:CDS | 30.0% |
| ! | TTCATCAGCTTTGTCTTAAA+GGG | - | chr1_4:48360724-48360743 | Msa0166780:CDS | 30.0% |
| ! | AGTATTACTTTGGGTTTGTT+TGG | - | chr1_4:48360828-48360847 | Msa0166780:CDS | 30.0% |
| GAGTAAATAGTTTCATAGTC+TGG | + | chr1_4:48360882-48360901 | None:intergenic | 30.0% | |
| !! | TTATATGATGGATGATTGGT+TGG | - | chr1_4:48360921-48360940 | Msa0166780:CDS | 30.0% |
| !! | TATATGATGGATGATTGGTT+GGG | - | chr1_4:48360922-48360941 | Msa0166780:CDS | 30.0% |
| !! | TCACCTTTGATTTGAAATGT+CGG | - | chr1_4:48361119-48361138 | Msa0166780:CDS | 30.0% |
| AGCGAGATATTTGATGAAAT+AGG | - | chr1_4:48361790-48361809 | Msa0166780:intron | 30.0% | |
| ATAGAATCTTCAATCCGTAA+GGG | + | chr1_4:48362351-48362370 | None:intergenic | 30.0% | |
| ! | TTACGGATTGAAGATTCTAT+CGG | - | chr1_4:48362351-48362370 | Msa0166780:intron | 30.0% |
| !! | TTGAAGATTCTATCGGTTTA+TGG | - | chr1_4:48362358-48362377 | Msa0166780:intron | 30.0% |
| !! | TGAAGATTCTATCGGTTTAT+GGG | - | chr1_4:48362359-48362378 | Msa0166780:intron | 30.0% |
| AGAGAGATATTGAAAACCAA+AGG | + | chr1_4:48362638-48362657 | None:intergenic | 30.0% | |
| !!! | TGTGATGGTTTTGCTTTTTC+GGG | + | chr1_4:48360233-48360252 | None:intergenic | 35.0% |
| !!! | CTGTGATGGTTTTGCTTTTT+CGG | + | chr1_4:48360234-48360253 | None:intergenic | 35.0% |
| !! | TTTTTGTTGTCTGCCATTGA+TGG | + | chr1_4:48360294-48360313 | None:intergenic | 35.0% |
| !! | TTAGGTTTTTGAGGATTTCG+AGG | + | chr1_4:48360386-48360405 | None:intergenic | 35.0% |
| !!! | TTGAGGCTTTTAGGTTTTTG+AGG | + | chr1_4:48360395-48360414 | None:intergenic | 35.0% |
| TTTATGTTCCTGAACTTGAC+CGG | - | chr1_4:48360610-48360629 | Msa0166780:CDS | 35.0% | |
| ATTTGTCCTTGAGAACAATC+CGG | + | chr1_4:48360632-48360651 | None:intergenic | 35.0% | |
| !! | ACTTTGGGTTTGTTTGGTTT+TGG | - | chr1_4:48360834-48360853 | Msa0166780:CDS | 35.0% |
| AGACACTATACTAACACACA+CGG | + | chr1_4:48361034-48361053 | None:intergenic | 35.0% | |
| TGTTCAATACTGACACAGTT+TGG | - | chr1_4:48361087-48361106 | Msa0166780:CDS | 35.0% | |
| ! | TTTGAAATGTCGGTGCTTAA+TGG | - | chr1_4:48361129-48361148 | Msa0166780:CDS | 35.0% |
| GAAAATTAGGTACTTAGGGT+CGG | - | chr1_4:48361172-48361191 | Msa0166780:CDS | 35.0% | |
| ! | AGATTTTAAATGGAGGGGAA+GGG | - | chr1_4:48361220-48361239 | Msa0166780:intron | 35.0% |
| ! | TGTTTGGTTCAAAAGTGGAT+AGG | - | chr1_4:48361270-48361289 | Msa0166780:intron | 35.0% |
| ! | GTTTGGTTCAAAAGTGGATA+GGG | - | chr1_4:48361271-48361290 | Msa0166780:intron | 35.0% |
| ! | TTTGGTTCAAAAGTGGATAG+GGG | - | chr1_4:48361272-48361291 | Msa0166780:intron | 35.0% |
| TGTAAGAGACATCAATGGAT+GGG | - | chr1_4:48361491-48361510 | Msa0166780:intron | 35.0% | |
| TTTCTTGTAAATCACGACGA+AGG | - | chr1_4:48361598-48361617 | Msa0166780:intron | 35.0% | |
| TGAACGAAATTGAAAACGGT+GGG | - | chr1_4:48361639-48361658 | Msa0166780:intron | 35.0% | |
| !! | AATATCTCGCTTTTCATCCT+AGG | + | chr1_4:48361781-48361800 | None:intergenic | 35.0% |
| GATGATGTTTCATGCATGTT+GGG | - | chr1_4:48361977-48361996 | Msa0166780:intron | 35.0% | |
| !! | AGGTTGATTTTCAGTGACAA+TGG | - | chr1_4:48362055-48362074 | Msa0166780:intron | 35.0% |
| TATGATTGACTGCACCAAAA+TGG | - | chr1_4:48362081-48362100 | Msa0166780:intron | 35.0% | |
| ATGATTGACTGCACCAAAAT+GGG | - | chr1_4:48362082-48362101 | Msa0166780:intron | 35.0% | |
| GATAGAATCTTCAATCCGTA+AGG | + | chr1_4:48362352-48362371 | None:intergenic | 35.0% | |
| TTGTACTTGTCCAAATCACT+AGG | + | chr1_4:48362457-48362476 | None:intergenic | 35.0% | |
| TTTGGACAAGTACAAGATAC+CGG | - | chr1_4:48362462-48362481 | Msa0166780:CDS | 35.0% | |
| ! | GATTTTGTGAAGAAGAATCC+TGG | - | chr1_4:48362547-48362566 | Msa0166780:CDS | 35.0% |
| CAACAATTTACAGTGGAATG+AGG | - | chr1_4:48362778-48362797 | Msa0166780:CDS | 35.0% | |
| TTCTGTTGTAAGTCACGTTA+TGG | - | chr1_4:48362840-48362859 | Msa0166780:CDS | 35.0% | |
| CTTCTGGATATTGTTGAAGT+TGG | + | chr1_4:48362942-48362961 | None:intergenic | 35.0% | |
| !!! | TTTTGGAGTTGGTGAAGTGA+AGG | + | chr1_4:48360208-48360227 | None:intergenic | 40.0% |
| !!! | TTTTGCTTTTTCGGGGGTTT+TGG | + | chr1_4:48360225-48360244 | None:intergenic | 40.0% |
| !!! | TGATGGTTTTGCTTTTTCGG+GGG | + | chr1_4:48360231-48360250 | None:intergenic | 40.0% |
| !!! | GTGATGGTTTTGCTTTTTCG+GGG | + | chr1_4:48360232-48360251 | None:intergenic | 40.0% |
| !!! | TGAGTTTGTTTTTGAAGGGG+AGG | + | chr1_4:48360347-48360366 | None:intergenic | 40.0% |
| TTTGAGGATTTCGAGGATGA+TGG | + | chr1_4:48360379-48360398 | None:intergenic | 40.0% | |
| TTCGATGTTGGATTGAACAG+AGG | + | chr1_4:48360505-48360524 | None:intergenic | 40.0% | |
| ATTCGTCCTTTCGCGAATAT+TGG | - | chr1_4:48360657-48360676 | Msa0166780:CDS | 40.0% | |
| TTCGTCCTTTCGCGAATATT+GGG | - | chr1_4:48360658-48360677 | Msa0166780:CDS | 40.0% | |
| TACTGATGTTAAGCTCTTCC+AGG | - | chr1_4:48360776-48360795 | Msa0166780:CDS | 40.0% | |
| ACAAGAACAAAACCTGATCC+TGG | + | chr1_4:48360797-48360816 | None:intergenic | 40.0% | |
| TACTGACACAGTTTGGACAT+CGG | - | chr1_4:48361094-48361113 | Msa0166780:CDS | 40.0% | |
| ! | GCACCGACATTTCAAATCAA+AGG | + | chr1_4:48361125-48361144 | None:intergenic | 40.0% |
| ! | GAGATTTTAAATGGAGGGGA+AGG | - | chr1_4:48361219-48361238 | Msa0166780:intron | 40.0% |
| ! | GATTTTAAATGGAGGGGAAG+GGG | - | chr1_4:48361221-48361240 | Msa0166780:intron | 40.0% |
| GTTGCTGTAAGAGACATCAA+TGG | - | chr1_4:48361486-48361505 | Msa0166780:intron | 40.0% | |
| CTGTAAGAGACATCAATGGA+TGG | - | chr1_4:48361490-48361509 | Msa0166780:intron | 40.0% | |
| GTAAGAGACATCAATGGATG+GGG | - | chr1_4:48361492-48361511 | Msa0166780:intron | 40.0% | |
| TGTCTCCATAGACCATTACA+TGG | + | chr1_4:48361527-48361546 | None:intergenic | 40.0% | |
| CTGAACGAAATTGAAAACGG+TGG | - | chr1_4:48361638-48361657 | Msa0166780:intron | 40.0% | |
| GAACGAAATTGAAAACGGTG+GGG | - | chr1_4:48361640-48361659 | Msa0166780:intron | 40.0% | |
| !! | TGAGGGTAAACCTACTTTTG+TGG | - | chr1_4:48361721-48361740 | Msa0166780:intron | 40.0% |
| GAATCAGATGCAATCTGACA+CGG | - | chr1_4:48361949-48361968 | Msa0166780:intron | 40.0% | |
| GGATGATGTTTCATGCATGT+TGG | - | chr1_4:48361976-48361995 | Msa0166780:intron | 40.0% | |
| TGATTGACTGCACCAAAATG+GGG | - | chr1_4:48362083-48362102 | Msa0166780:intron | 40.0% | |
| ! | ATATGAGGTTGGCTGAAGAT+AGG | - | chr1_4:48362200-48362219 | Msa0166780:intron | 40.0% |
| CTGAAGATAGGTTCTACAAC+AGG | - | chr1_4:48362212-48362231 | Msa0166780:intron | 40.0% | |
| GTTCTTGAGGAAGATGAAGA+TGG | - | chr1_4:48362288-48362307 | Msa0166780:intron | 40.0% | |
| !! | ATTCTATCGGTTTATGGGTG+TGG | - | chr1_4:48362364-48362383 | Msa0166780:intron | 40.0% |
| !! | TTCTATCGGTTTATGGGTGT+GGG | - | chr1_4:48362365-48362384 | Msa0166780:intron | 40.0% |
| TGACTACCCCTGATATTAAG+TGG | - | chr1_4:48362419-48362438 | Msa0166780:CDS | 40.0% | |
| ATATTAAGTGGCTAGGGGTT+AGG | - | chr1_4:48362431-48362450 | Msa0166780:CDS | 40.0% | |
| TTAATATCCTGCTCGGTCAT+TGG | + | chr1_4:48362502-48362521 | None:intergenic | 40.0% | |
| TCCAGTCTTAATATCCTGCT+CGG | + | chr1_4:48362509-48362528 | None:intergenic | 40.0% | |
| GCAGGATATTAAGACTGGAA+AGG | - | chr1_4:48362510-48362529 | Msa0166780:CDS | 40.0% | |
| TAAGACTGGAAAGGACATGT+TGG | - | chr1_4:48362519-48362538 | Msa0166780:CDS | 40.0% | |
| TTGTGAAGAAGAATCCTGGT+TGG | - | chr1_4:48362551-48362570 | Msa0166780:CDS | 40.0% | |
| TGTGAAGAAGAATCCTGGTT+GGG | - | chr1_4:48362552-48362571 | Msa0166780:CDS | 40.0% | |
| GATGGTTAAGACTAAGCAGA+AGG | - | chr1_4:48362591-48362610 | Msa0166780:CDS | 40.0% | |
| TCTGCAGCAACAATTTACAG+TGG | - | chr1_4:48362771-48362790 | Msa0166780:CDS | 40.0% | |
| GTTGGTCATGTGTTTACTGA+TGG | + | chr1_4:48362924-48362943 | None:intergenic | 40.0% | |
| CAAGCAATCCATAAACACTC+AGG | + | chr1_4:48362965-48362984 | None:intergenic | 40.0% | |
| !!! | TTTTTCGGGGGTTTTGGAGT+TGG | + | chr1_4:48360219-48360238 | None:intergenic | 45.0% |
| !! | TTTCGTCGGTTGGTTCTGTA+CGG | + | chr1_4:48360323-48360342 | None:intergenic | 45.0% |
| TTTGAAGGGGAGGATTTCGT+CGG | + | chr1_4:48360337-48360356 | None:intergenic | 45.0% | |
| !! | ATTTCGAGGATGATGGAGTC+TGG | + | chr1_4:48360372-48360391 | None:intergenic | 45.0% |
| ! | AAGATGCGGTTGAGGCTTTT+AGG | + | chr1_4:48360404-48360423 | None:intergenic | 45.0% |
| ! | TTTGGTTCCGGAAGAAGATG+CGG | + | chr1_4:48360418-48360437 | None:intergenic | 45.0% |
| GTTGGATTGAACAGAGGAGA+GGG | + | chr1_4:48360499-48360518 | None:intergenic | 45.0% | |
| TGTTGGATTGAACAGAGGAG+AGG | + | chr1_4:48360500-48360519 | None:intergenic | 45.0% | |
| GAGAACGAGAGATTCGATGT+TGG | + | chr1_4:48360517-48360536 | None:intergenic | 45.0% | |
| AGAACAATCCGGTCAAGTTC+AGG | + | chr1_4:48360621-48360640 | None:intergenic | 45.0% | |
| ACTTGACCGGATTGTTCTCA+AGG | - | chr1_4:48360623-48360642 | Msa0166780:CDS | 45.0% | |
| ACAGTCCCAATATTCGCGAA+AGG | + | chr1_4:48360666-48360685 | None:intergenic | 45.0% | |
| GGAAAACTGCTATTACTGCC+AGG | - | chr1_4:48360688-48360707 | Msa0166780:CDS | 45.0% | |
| TGTTAAGCTCTTCCAGGATC+AGG | - | chr1_4:48360782-48360801 | Msa0166780:CDS | 45.0% | |
| TGTTCGACACCAACATGTGT+CGG | - | chr1_4:48361055-48361074 | Msa0166780:CDS | 45.0% | |
| !! | CACATAGTACCGACACATGT+TGG | + | chr1_4:48361067-48361086 | None:intergenic | 45.0% |
| TTAGGTACTTAGGGTCGGTT+TGG | - | chr1_4:48361177-48361196 | Msa0166780:CDS | 45.0% | |
| !! | TTAGGGTCGGTTTGGTTCAA+TGG | - | chr1_4:48361185-48361204 | Msa0166780:CDS | 45.0% |
| ! | AGGGGGGAGATTTTAAATGG+AGG | - | chr1_4:48361213-48361232 | Msa0166780:intron | 45.0% |
| ! | GGGGGGAGATTTTAAATGGA+GGG | - | chr1_4:48361214-48361233 | Msa0166780:intron | 45.0% |
| ! | GGGGGAGATTTTAAATGGAG+GGG | - | chr1_4:48361215-48361234 | Msa0166780:intron | 45.0% |
| GTTCAAAAGTGGATAGGGGA+GGG | - | chr1_4:48361276-48361295 | Msa0166780:intron | 45.0% | |
| TTCAAAAGTGGATAGGGGAG+GGG | - | chr1_4:48361277-48361296 | Msa0166780:intron | 45.0% | |
| !! | GTGGCTTTAGTGTCATACCA+AGG | - | chr1_4:48361461-48361480 | Msa0166780:intron | 45.0% |
| GTCTCTTACAGCAACTTCCT+TGG | + | chr1_4:48361481-48361500 | None:intergenic | 45.0% | |
| CAGTGCCATGTAATGGTCTA+TGG | - | chr1_4:48361519-48361538 | Msa0166780:intron | 45.0% | |
| TTCAAGCCTCAACGTTGTTG+CGG | - | chr1_4:48362009-48362028 | Msa0166780:intron | 45.0% | |
| CCAACTCGGTCAATATTTGG+CGG | + | chr1_4:48362127-48362146 | None:intergenic | 45.0% | |
| CGCCAAATATTGACCGAGTT+GGG | - | chr1_4:48362125-48362144 | Msa0166780:intron | 45.0% | |
| GCCAAATATTGACCGAGTTG+GGG | - | chr1_4:48362126-48362145 | Msa0166780:intron | 45.0% | |
| TCCCCAACTCGGTCAATATT+TGG | + | chr1_4:48362130-48362149 | None:intergenic | 45.0% | |
| GTTCATTCTCTTGGTGGAGA+AGG | - | chr1_4:48362168-48362187 | Msa0166780:intron | 45.0% | |
| AGAAGGACGCAGCTTATATG+AGG | - | chr1_4:48362185-48362204 | Msa0166780:intron | 45.0% | |
| GTTTCCGTGCATAATCGTGA+CGG | - | chr1_4:48362234-48362253 | Msa0166780:intron | 45.0% | |
| AGTCAAGTGAGAGCTATCGT+AGG | + | chr1_4:48362404-48362423 | None:intergenic | 45.0% | |
| ACCCCTGATATTAAGTGGCT+AGG | - | chr1_4:48362424-48362443 | Msa0166780:CDS | 45.0% | |
| CCCTAGCCACTTAATATCAG+GGG | + | chr1_4:48362428-48362447 | None:intergenic | 45.0% | |
| CCCCTGATATTAAGTGGCTA+GGG | - | chr1_4:48362425-48362444 | Msa0166780:CDS | 45.0% | |
| CCCCTAGCCACTTAATATCA+GGG | + | chr1_4:48362429-48362448 | None:intergenic | 45.0% | |
| CCCTGATATTAAGTGGCTAG+GGG | - | chr1_4:48362426-48362445 | Msa0166780:CDS | 45.0% | |
| ACCCCTAGCCACTTAATATC+AGG | + | chr1_4:48362430-48362449 | None:intergenic | 45.0% | |
| ACCGAGCAGGATATTAAGAC+TGG | - | chr1_4:48362505-48362524 | Msa0166780:CDS | 45.0% | |
| GGTTGAGGAACTGACATTGA+TGG | - | chr1_4:48362573-48362592 | Msa0166780:CDS | 45.0% | |
| TAAGCAGAAGGCTGAGATAC+AGG | - | chr1_4:48362603-48362622 | Msa0166780:CDS | 45.0% | |
| !! | ATACAGGCTTTGAGCACCTT+TGG | - | chr1_4:48362619-48362638 | Msa0166780:CDS | 45.0% |
| TCCTGCTGCTGCAATTTCAA+GGG | + | chr1_4:48362673-48362692 | None:intergenic | 45.0% | |
| ATCCTGCTGCTGCAATTTCA+AGG | + | chr1_4:48362674-48362693 | None:intergenic | 45.0% | |
| TGAAATTGCAGCAGCAGGAT+TGG | - | chr1_4:48362674-48362693 | Msa0166780:CDS | 45.0% | |
| TCCAGAAGCCTGAGTGTTTA+TGG | - | chr1_4:48362954-48362973 | Msa0166780:five_prime_UTR | 45.0% | |
| TCCATAAACACTCAGGCTTC+TGG | + | chr1_4:48362958-48362977 | None:intergenic | 45.0% | |
| GCGGGAAAGTGATTCTGTGA+TGG | + | chr1_4:48360248-48360267 | None:intergenic | 50.0% | |
| ACACCTCCAGCATCCATCAA+TGG | - | chr1_4:48360278-48360297 | Msa0166780:three_prime_UTR | 50.0% | |
| ! | TGTCTGCCATTGATGGATGC+TGG | + | chr1_4:48360287-48360306 | None:intergenic | 50.0% |
| !!! | GAGGGTTAGGGTTTTGGTTC+CGG | + | chr1_4:48360430-48360449 | None:intergenic | 50.0% |
| ! | TTCGTCGAGGGTTAGGGTTT+TGG | + | chr1_4:48360436-48360455 | None:intergenic | 50.0% |
| TGAGAGTTCGTCGAGGGTTA+GGG | + | chr1_4:48360442-48360461 | None:intergenic | 50.0% | |
| CACTCTATCCTCGCTGGTAA+TGG | - | chr1_4:48360546-48360565 | Msa0166780:CDS | 50.0% | |
| ATGCGAATCCATTACCAGCG+AGG | + | chr1_4:48360557-48360576 | None:intergenic | 50.0% | |
| TGATTCGCAGCAGAACGAGA+CGG | + | chr1_4:48360588-48360607 | None:intergenic | 50.0% | |
| TCGCGAATATTGGGACTGTG+AGG | - | chr1_4:48360667-48360686 | Msa0166780:CDS | 50.0% | |
| !! | GGTCGGTTTGGTTCAATGGA+GGG | - | chr1_4:48361189-48361208 | Msa0166780:CDS | 50.0% |
| !! | GTCGGTTTGGTTCAATGGAG+GGG | - | chr1_4:48361190-48361209 | Msa0166780:CDS | 50.0% |
| ! | GTTTGGTTCAATGGAGGGGA+GGG | - | chr1_4:48361194-48361213 | Msa0166780:CDS | 50.0% |
| ! | TTTGGTTCAATGGAGGGGAG+GGG | - | chr1_4:48361195-48361214 | Msa0166780:CDS | 50.0% |
| ! | GGGAGGGGGGAGATTTTAAA+TGG | - | chr1_4:48361210-48361229 | Msa0166780:intron | 50.0% |
| GGTTCAAAAGTGGATAGGGG+AGG | - | chr1_4:48361275-48361294 | Msa0166780:intron | 50.0% | |
| GAGACATCAATGGATGGGGT+TGG | - | chr1_4:48361496-48361515 | Msa0166780:intron | 50.0% | |
| GAGTGGCTGACCACAAAAGT+AGG | + | chr1_4:48361734-48361753 | None:intergenic | 50.0% | |
| TCATCCTAGGTAGTCGATCC+CGG | + | chr1_4:48361768-48361787 | None:intergenic | 50.0% | |
| GATGCAATCTGACACGGTTC+TGG | - | chr1_4:48361955-48361974 | Msa0166780:intron | 50.0% | |
| AGAAAGGGGTGGTTGTAGGA+AGG | - | chr1_4:48362035-48362054 | Msa0166780:intron | 50.0% | |
| TGACTGCACCAAAATGGGGA+TGG | - | chr1_4:48362087-48362106 | Msa0166780:intron | 50.0% | |
| GACTGCACCAAAATGGGGAT+GGG | - | chr1_4:48362088-48362107 | Msa0166780:intron | 50.0% | |
| ACTGCACCAAAATGGGGATG+GGG | - | chr1_4:48362089-48362108 | Msa0166780:intron | 50.0% | |
| CCGCCAAATATTGACCGAGT+TGG | - | chr1_4:48362124-48362143 | Msa0166780:intron | 50.0% | |
| CACTCTGCATATCCCCAACT+CGG | + | chr1_4:48362141-48362160 | None:intergenic | 50.0% | |
| TGACGCGCTGTTCATTCTCT+TGG | - | chr1_4:48362159-48362178 | Msa0166780:intron | 50.0% | |
| GGACGCAGCTTATATGAGGT+TGG | - | chr1_4:48362189-48362208 | Msa0166780:intron | 50.0% | |
| TTCGCCGTCACGATTATGCA+CGG | + | chr1_4:48362241-48362260 | None:intergenic | 50.0% | |
| TGCATAATCGTGACGGCGAA+GGG | - | chr1_4:48362241-48362260 | Msa0166780:intron | 50.0% | |
| AACAGCCTCGTCGAAACATC+CGG | + | chr1_4:48362271-48362290 | None:intergenic | 50.0% | |
| TTTCGACGAGGCTGTTCTTG+AGG | - | chr1_4:48362275-48362294 | Msa0166780:intron | 50.0% | |
| CTTGTGGACAGTGACCCTTA+CGG | - | chr1_4:48362334-48362353 | Msa0166780:intron | 50.0% | |
| AGGGGTTAGGCCTAGTGATT+TGG | - | chr1_4:48362444-48362463 | Msa0166780:CDS | 50.0% | |
| GACTGGAAAGGACATGTTGG+AGG | - | chr1_4:48362522-48362541 | Msa0166780:CDS | 50.0% | |
| ! | GAAGAATCCTGGTTGGGTTG+AGG | - | chr1_4:48362558-48362577 | Msa0166780:CDS | 50.0% |
| ! | TGCTGGAGGTGTGTGAGTGT+GGG | + | chr1_4:48360270-48360289 | None:intergenic | 55.0% |
| ! | ATGCTGGAGGTGTGTGAGTG+TGG | + | chr1_4:48360271-48360290 | None:intergenic | 55.0% |
| ! | CTGCCATTGATGGATGCTGG+AGG | + | chr1_4:48360284-48360303 | None:intergenic | 55.0% |
| AAGGGGAGGATTTCGTCGGT+TGG | + | chr1_4:48360333-48360352 | None:intergenic | 55.0% | |
| GCCTCAACCGCATCTTCTTC+CGG | - | chr1_4:48360408-48360427 | Msa0166780:three_prime_UTR | 55.0% | |
| TCCGGAAGAAGATGCGGTTG+AGG | + | chr1_4:48360412-48360431 | None:intergenic | 55.0% | |
| GTGAGAGTTCGTCGAGGGTT+AGG | + | chr1_4:48360443-48360462 | None:intergenic | 55.0% | |
| GGGAAGTGAGAGTTCGTCGA+GGG | + | chr1_4:48360448-48360467 | None:intergenic | 55.0% | |
| AGGGAAGTGAGAGTTCGTCG+AGG | + | chr1_4:48360449-48360468 | None:intergenic | 55.0% | |
| ATCGCTCACTCTATCCTCGC+TGG | - | chr1_4:48360540-48360559 | Msa0166780:CDS | 55.0% | |
| GATTCGCAGCAGAACGAGAC+GGG | + | chr1_4:48360587-48360606 | None:intergenic | 55.0% | |
| !! | GGGTCGGTTTGGTTCAATGG+AGG | - | chr1_4:48361188-48361207 | Msa0166780:CDS | 55.0% |
| ! | GGTTTGGTTCAATGGAGGGG+AGG | - | chr1_4:48361193-48361212 | Msa0166780:CDS | 55.0% |
| TTGGTTCAATGGAGGGGAGG+GGG | - | chr1_4:48361196-48361215 | Msa0166780:CDS | 55.0% | |
| ! | GGGTTGGCAGTGCCATGTAA+TGG | - | chr1_4:48361512-48361531 | Msa0166780:intron | 55.0% |
| ! | AGCCACTCCGTGCTACTATC+CGG | - | chr1_4:48361746-48361765 | Msa0166780:intron | 55.0% |
| GTCGATCCCGGATAGTAGCA+CGG | + | chr1_4:48361756-48361775 | None:intergenic | 55.0% | |
| CTATCCGGGATCGACTACCT+AGG | - | chr1_4:48361761-48361780 | Msa0166780:intron | 55.0% | |
| AAGCCTCAACGTTGTTGCGG+CGG | - | chr1_4:48362012-48362031 | Msa0166780:intron | 55.0% | |
| AACGTTGTTGCGGCGGAGAA+AGG | - | chr1_4:48362019-48362038 | Msa0166780:intron | 55.0% | |
| ACGTTGTTGCGGCGGAGAAA+GGG | - | chr1_4:48362020-48362039 | Msa0166780:intron | 55.0% | |
| CTGCACCAAAATGGGGATGG+GGG | - | chr1_4:48362090-48362109 | Msa0166780:intron | 55.0% | |
| TGCACCAAAATGGGGATGGG+GGG | - | chr1_4:48362091-48362110 | Msa0166780:intron | 55.0% | |
| ! | CTTTCCCCCCATCCCCATTT+TGG | + | chr1_4:48362098-48362117 | None:intergenic | 55.0% |
| CAAAATGGGGATGGGGGGAA+AGG | - | chr1_4:48362096-48362115 | Msa0166780:intron | 55.0% | |
| CGCGCTGTTCATTCTCTTGG+TGG | - | chr1_4:48362162-48362181 | Msa0166780:intron | 55.0% | |
| GTGCATAATCGTGACGGCGA+AGG | - | chr1_4:48362240-48362259 | Msa0166780:intron | 55.0% | |
| GCATAATCGTGACGGCGAAG+GGG | - | chr1_4:48362242-48362261 | Msa0166780:intron | 55.0% | |
| ACAAGATACCGGAGCAGTGC+AGG | - | chr1_4:48362473-48362492 | Msa0166780:CDS | 55.0% | |
| GTCAGTTCCTCAACCCAACC+AGG | + | chr1_4:48362568-48362587 | None:intergenic | 55.0% | |
| GCCCTTGAAATTGCAGCAGC+AGG | - | chr1_4:48362669-48362688 | Msa0166780:CDS | 55.0% | |
| ! | TGGAGGTGTGTGAGTGTGGG+CGG | + | chr1_4:48360267-48360286 | None:intergenic | 60.0% |
| !! | CGTCGGTTGGTTCTGTACGG+CGG | + | chr1_4:48360320-48360339 | None:intergenic | 60.0% |
| GCTACTTCGCGGCAGGTGAA+GGG | + | chr1_4:48360468-48360487 | None:intergenic | 60.0% | |
| CTTCACCTGCCGCGAAGTAG+CGG | - | chr1_4:48360467-48360486 | Msa0166780:exon | 60.0% | |
| GGGAGAGATCCGCTACTTCG+CGG | + | chr1_4:48360479-48360498 | None:intergenic | 60.0% | |
| TGGTTCAATGGAGGGGAGGG+GGG | - | chr1_4:48361197-48361216 | Msa0166780:CDS | 60.0% | |
| ! | GCCACTCCGTGCTACTATCC+GGG | - | chr1_4:48361747-48361766 | Msa0166780:intron | 60.0% |
| TCCCGGATAGTAGCACGGAG+TGG | + | chr1_4:48361751-48361770 | None:intergenic | 60.0% | |
| TCTCCGCCGCAACAACGTTG+AGG | + | chr1_4:48362018-48362037 | None:intergenic | 60.0% | |
| CGTTGTTGCGGCGGAGAAAG+GGG | - | chr1_4:48362021-48362040 | Msa0166780:intron | 60.0% | |
| GCGGAGAAAGGGGTGGTTGT+AGG | - | chr1_4:48362031-48362050 | Msa0166780:intron | 60.0% | |
| GTTGCCAGTTCTCGCGCTTG+TGG | - | chr1_4:48362318-48362337 | Msa0166780:intron | 60.0% | |
| CTGTCCACAAGCGCGAGAAC+TGG | + | chr1_4:48362325-48362344 | None:intergenic | 60.0% | |
| ATTGGCAGCCTGCACTGCTC+CGG | + | chr1_4:48362484-48362503 | None:intergenic | 60.0% | |
| ! | GGAGGTGTGTGAGTGTGGGC+GGG | + | chr1_4:48360266-48360285 | None:intergenic | 65.0% |
| CGCTACTTCGCGGCAGGTGA+AGG | + | chr1_4:48360469-48360488 | None:intergenic | 65.0% | |
| GAGATCCGCTACTTCGCGGC+AGG | + | chr1_4:48360475-48360494 | None:intergenic | 65.0% | |
| TGTTGCGGCGGAGAAAGGGG+TGG | - | chr1_4:48362024-48362043 | Msa0166780:intron | 65.0% | |
| GGCAGCCGGATGTTTCGACG+AGG | - | chr1_4:48362263-48362282 | Msa0166780:intron | 65.0% | |
| CAGGCTGCCAATGACCGAGC+AGG | - | chr1_4:48362492-48362511 | Msa0166780:CDS | 65.0% | |
| CGTGACGGCGAAGGGGCAGC+CGG | - | chr1_4:48362249-48362268 | Msa0166780:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 48360190 | 48362993 | 48360190 | ID=Msa0166780;Name=Msa0166780 |
| chr1_4 | mRNA | 48360190 | 48362993 | 48360190 | ID=Msa0166780-mRNA-1;Parent=Msa0166780;Name=Msa0166780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|2|291|417 |
| chr1_4 | exon | 48360190 | 48361227 | 48360190 | ID=Msa0166780-mRNA-1:exon:14045;Parent=Msa0166780-mRNA-1 |
| chr1_4 | exon | 48362380 | 48362993 | 48362380 | ID=Msa0166780-mRNA-1:exon:14044;Parent=Msa0166780-mRNA-1 |
| chr1_4 | five_prime_UTR | 48362887 | 48362993 | 48362887 | ID=Msa0166780-mRNA-1:five_prime_utr;Parent=Msa0166780-mRNA-1 |
| chr1_4 | CDS | 48362380 | 48362886 | 48362380 | ID=Msa0166780-mRNA-1:cds;Parent=Msa0166780-mRNA-1 |
| chr1_4 | CDS | 48360481 | 48361227 | 48360481 | ID=Msa0166780-mRNA-1:cds;Parent=Msa0166780-mRNA-1 |
| chr1_4 | three_prime_UTR | 48360190 | 48360480 | 48360190 | ID=Msa0166780-mRNA-1:three_prime_utr;Parent=Msa0166780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
