Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167270 | sp|Q93XY5|TET18_ARATH | 52.985 | 268 | 91 | 5 | 1 | 240 | 1 | 261 | 4.61e-81 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167270 | A0A072VK97 | 95.984 | 249 | 10 | 0 | 1 | 249 | 1 | 249 | 9.86e-176 | 492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0167270 | Msa1145390 | 0.879722 | 9.881026e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167270 | MtrunA17_Chr1g0182821 | 95.984 | 249 | 10 | 0 | 1 | 249 | 1 | 249 | 1.90e-179 | 492 |
| Msa0167270 | MtrunA17_Chr5g0400291 | 36.398 | 261 | 142 | 7 | 5 | 243 | 3 | 261 | 4.42e-46 | 155 |
| Msa0167270 | MtrunA17_Chr4g0054961 | 36.327 | 245 | 140 | 5 | 13 | 243 | 10 | 252 | 7.98e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167270 | AT2G20230.1 | 52.985 | 268 | 91 | 5 | 1 | 240 | 1 | 261 | 4.69e-82 | 247 |
| Msa0167270 | AT4G28770.1 | 47.038 | 287 | 108 | 4 | 1 | 249 | 1 | 281 | 2.19e-70 | 218 |
| Msa0167270 | AT4G28770.2 | 47.038 | 287 | 108 | 4 | 1 | 249 | 45 | 325 | 5.41e-70 | 218 |
| Msa0167270 | AT2G20740.1 | 36.170 | 188 | 104 | 1 | 10 | 197 | 9 | 180 | 8.10e-44 | 147 |
| Msa0167270 | AT2G20740.2 | 41.353 | 133 | 78 | 0 | 65 | 197 | 7 | 139 | 2.58e-37 | 129 |
| Msa0167270 | AT1G32400.2 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 5.87e-31 | 116 |
| Msa0167270 | AT1G32400.1 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 5.87e-31 | 116 |
| Msa0167270 | AT1G32400.3 | 32.627 | 236 | 143 | 5 | 22 | 243 | 19 | 252 | 5.87e-31 | 116 |
| Msa0167270 | AT2G20740.3 | 37.500 | 88 | 55 | 0 | 110 | 197 | 3 | 90 | 1.39e-18 | 79.7 |
Find 83 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAGTTCTGCACAGATTT+TGG | 0.115319 | 1_4:+49168146 | Msa0167270:three_prime_UTR |
| TTCTTTCGAAATCAAAATTC+AGG | 0.257790 | 1_4:+49164012 | Msa0167270:five_prime_UTR |
| AATTTAACTTGGTAGAATTA+AGG | 0.269640 | 1_4:+49168204 | Msa0167270:three_prime_UTR |
| GTGTGCTGCATTGCTTTCTT+TGG | 0.269796 | 1_4:+49164999 | Msa0167270:CDS |
| ATTGCAGCTGAGATTATTAA+TGG | 0.292794 | 1_4:+49165026 | Msa0167270:CDS |
| AATTGCTGTTCTTGTAGTTC+AGG | 0.308567 | 1_4:+49165506 | Msa0167270:CDS |
| GCCAGACTGATGATTTAATA+GGG | 0.311406 | 1_4:-49166511 | None:intergenic |
| ACCTCAGGCATTATCTCTAT+TGG | 0.324382 | 1_4:+49166398 | Msa0167270:intron |
| ATGCCTTGAATTCTGTTAAT+AGG | 0.329427 | 1_4:+49168321 | Msa0167270:three_prime_UTR |
| CTTTGCTTGACCCAGCTGTT+TGG | 0.337176 | 1_4:-49166533 | None:intergenic |
| GGCCAGACTGATGATTTAAT+AGG | 0.344500 | 1_4:-49166512 | None:intergenic |
| TATTCTAGAGAAAATGAAAT+AGG | 0.347682 | 1_4:+49163952 | Msa0167270:five_prime_UTR |
| ACAAGGATATAAATGGATTC+TGG | 0.351733 | 1_4:-49168432 | None:intergenic |
| CTTCAGAGAACAACAACAAT+TGG | 0.353254 | 1_4:-49168119 | None:intergenic |
| CAATTCTTCTCTATTCCATA+TGG | 0.354928 | 1_4:+49164141 | Msa0167270:CDS |
| ACGAGGAGGAATATGATGTT+AGG | 0.355161 | 1_4:+49166472 | Msa0167270:CDS |
| TGTTCTACTTGAGGCTGCTT+TGG | 0.360243 | 1_4:+49165260 | Msa0167270:CDS |
| AGGAAGAGAGAGGGAAAGAT+GGG | 0.370637 | 1_4:-49164207 | None:intergenic |
| GAGAGGGAAAGATGGGGAAG+AGG | 0.382344 | 1_4:-49164200 | None:intergenic |
| GAGGAAGAGAGAGGGAAAGA+TGG | 0.382471 | 1_4:-49164208 | None:intergenic |
| ATTACCTTTATAGGATCTTC+CGG | 0.382657 | 1_4:+49165410 | Msa0167270:intron |
| AGTTACGAAGCGTGAGTTAC+AGG | 0.389448 | 1_4:+49167907 | Msa0167270:exon |
| CATCTATGCTTTCATGGGTG+TGG | 0.392159 | 1_4:+49164968 | Msa0167270:CDS |
| AGTCGTCAGTGTTGTTGCTT+TGG | 0.401033 | 1_4:+49168401 | Msa0167270:three_prime_UTR |
| ATGATGTTAGGGGTAGAAGT+TGG | 0.409775 | 1_4:+49166484 | Msa0167270:CDS |
| TTTCATGGGTGTGGGAATAT+TGG | 0.411137 | 1_4:+49164977 | Msa0167270:CDS |
| GTCGTCAGTGTTGTTGCTTT+GGG | 0.411736 | 1_4:+49168402 | Msa0167270:three_prime_UTR |
| CGAGGAGGAATATGATGTTA+GGG | 0.412606 | 1_4:+49166473 | Msa0167270:CDS |
| ATAATCAAGATATATGTAGA+TGG | 0.417454 | 1_4:+49165478 | Msa0167270:CDS |
| GAAGAAAATTGAGAAATTTG+AGG | 0.418209 | 1_4:-49164100 | None:intergenic |
| GAGGAAACCTCTCTGACGTT+TGG | 0.423049 | 1_4:+49166565 | Msa0167270:CDS |
| TGATGTTAGGGGTAGAAGTT+GGG | 0.423218 | 1_4:+49166485 | Msa0167270:CDS |
| CAACCTATTAACAGAATTCA+AGG | 0.431573 | 1_4:-49168324 | None:intergenic |
| ATCTATGCTTTCATGGGTGT+GGG | 0.433519 | 1_4:+49164969 | Msa0167270:CDS |
| CATCAGTCTGGCCAAACAGC+TGG | 0.435710 | 1_4:+49166522 | Msa0167270:CDS |
| CCATATGGATGCTCAATCAA+TGG | 0.438362 | 1_4:+49164156 | Msa0167270:CDS |
| TAGGTTCATCTATGCTTTCA+TGG | 0.442156 | 1_4:+49164962 | Msa0167270:intron |
| ATTTGACCGGTTGGATCAAC+CGG | 0.443069 | 1_4:-49165429 | None:intergenic |
| AGATGGGGAAGAGGTGGTTG+AGG | 0.445127 | 1_4:-49164191 | None:intergenic |
| ATATCAATCTTCCCGCTCCT+TGG | 0.446220 | 1_4:+49164258 | Msa0167270:CDS |
| AAAAGGAGCGAGGAAGAGAG+AGG | 0.448950 | 1_4:-49164217 | None:intergenic |
| AGGGAAAGATGGGGAAGAGG+TGG | 0.462667 | 1_4:-49164197 | None:intergenic |
| TCTACTTGAGGCTGCTTTGG+TGG | 0.469686 | 1_4:+49165263 | Msa0167270:CDS |
| TCATTGCAATTGATCGTCAA+TGG | 0.469786 | 1_4:+49165289 | Msa0167270:CDS |
| CCATTGATTGAGCATCCATA+TGG | 0.473436 | 1_4:-49164156 | None:intergenic |
| TCTCTGACGTTTGGAGTTCA+CGG | 0.484229 | 1_4:+49166574 | Msa0167270:CDS |
| CATATGGATGCTCAATCAAT+GGG | 0.488996 | 1_4:+49164157 | Msa0167270:CDS |
| TGATATCGGAAGTGAATTGA+GGG | 0.489761 | 1_4:-49164241 | None:intergenic |
| AGGTTCATCTATGCTTTCAT+GGG | 0.492929 | 1_4:+49164963 | Msa0167270:intron |
| AAAGGAGCGAGGAAGAGAGA+GGG | 0.494567 | 1_4:-49164216 | None:intergenic |
| AGGAGCGGGAAGATTGATAT+CGG | 0.501407 | 1_4:-49164255 | None:intergenic |
| TTTCTCAATTGAATATGCAC+AGG | 0.502992 | 1_4:+49168276 | Msa0167270:three_prime_UTR |
| CAAGATATATGTAGATGGGT+TGG | 0.507265 | 1_4:+49165483 | Msa0167270:CDS |
| GGAAGTGAATTGAGGGGAAA+AGG | 0.514250 | 1_4:-49164234 | None:intergenic |
| TTGATATCGGAAGTGAATTG+AGG | 0.516331 | 1_4:-49164242 | None:intergenic |
| CCCCTATTAAATCATCAGTC+TGG | 0.532310 | 1_4:+49166510 | Msa0167270:CDS |
| GATCTTCCGGTTGATCCAAC+CGG | 0.532933 | 1_4:+49165423 | Msa0167270:CDS |
| TCGAAGACTCGCAATTTGAC+CGG | 0.535139 | 1_4:-49165442 | None:intergenic |
| AGACTCGCAATTTGACCGGT+TGG | 0.535765 | 1_4:-49165438 | None:intergenic |
| TAATCAAGATATATGTAGAT+GGG | 0.544634 | 1_4:+49165479 | Msa0167270:CDS |
| CAGAGAACAACAACAATTGG+AGG | 0.548932 | 1_4:-49168116 | None:intergenic |
| ATCAGTCTGGCCAAACAGCT+GGG | 0.562826 | 1_4:+49166523 | Msa0167270:CDS |
| AAGGGAACGAACCAAGGAGC+GGG | 0.563976 | 1_4:-49164269 | None:intergenic |
| GAACAACAACAATTGGAGGC+TGG | 0.572929 | 1_4:-49168112 | None:intergenic |
| CAAACAGCTGGGTCAAGCAA+AGG | 0.573654 | 1_4:+49166534 | Msa0167270:CDS |
| TTGTAGTGTGAAATTTAACT+TGG | 0.576278 | 1_4:+49168193 | Msa0167270:three_prime_UTR |
| CACGGCACTTGTTCTACTTG+AGG | 0.578232 | 1_4:+49165251 | Msa0167270:CDS |
| AATTGAGGGGAAAAGGAGCG+AGG | 0.579128 | 1_4:-49164227 | None:intergenic |
| GAAAATTGAGAAATTTGAGG+AGG | 0.582971 | 1_4:-49164097 | None:intergenic |
| GGAAGAGAGAGGGAAAGATG+GGG | 0.582999 | 1_4:-49164206 | None:intergenic |
| AAATTTGAGGAGGAATGCTA+AGG | 0.594373 | 1_4:-49164087 | None:intergenic |
| GAGTTCACGGATGAGAGAGA+AGG | 0.616146 | 1_4:+49166587 | Msa0167270:CDS |
| CCAGACTGATGATTTAATAG+GGG | 0.616151 | 1_4:-49166510 | None:intergenic |
| TTGCAGTACGGATTGAACAA+TGG | 0.622871 | 1_4:+49167874 | Msa0167270:intron |
| CCAGTATACAGTACTAATCA+CGG | 0.632085 | 1_4:+49165233 | Msa0167270:intron |
| GAAGGGAACGAACCAAGGAG+CGG | 0.632688 | 1_4:-49164270 | None:intergenic |
| AATTGATCGTCAATGGCAAG+AGG | 0.638943 | 1_4:+49165296 | Msa0167270:CDS |
| TCAAGCAAAGGCGATATCAG+AGG | 0.640764 | 1_4:+49166546 | Msa0167270:CDS |
| GATATCGGAAGTGAATTGAG+GGG | 0.647926 | 1_4:-49164240 | None:intergenic |
| TGCTCTTCGAGTAGAAACTG+TGG | 0.685685 | 1_4:-49166439 | None:intergenic |
| GAGGAGGAATATGATGTTAG+GGG | 0.702865 | 1_4:+49166474 | Msa0167270:CDS |
| GTGAACTCCAAACGTCAGAG+AGG | 0.717106 | 1_4:-49166572 | None:intergenic |
| AGCTGTCAAGCAATTCAGTG+TGG | 0.745176 | 1_4:+49167944 | Msa0167270:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTGGTTT+TGG | + | chr1_4:49164454-49164473 | Msa0167270:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGTTTT+GGG | + | chr1_4:49164455-49164474 | Msa0167270:intron | 10.0% |
| !! | GTTATTAATTATTATTCATT+TGG | + | chr1_4:49164891-49164910 | Msa0167270:intron | 10.0% |
| !! | TTAGACTATTATTTATATAA+AGG | + | chr1_4:49165607-49165626 | Msa0167270:intron | 10.0% |
| !! | TGAAGTAAAAAAAACATAAA+AGG | - | chr1_4:49164574-49164593 | None:intergenic | 15.0% |
| !!! | TTTATTTTCATATCTTAGTT+TGG | + | chr1_4:49165090-49165109 | Msa0167270:intron | 15.0% |
| !!! | ATTACAATCATACTTTTTTT+CGG | + | chr1_4:49165790-49165809 | Msa0167270:intron | 15.0% |
| !! | ATATTATATGTAATAGCTAT+TGG | + | chr1_4:49165824-49165843 | Msa0167270:intron | 15.0% |
| !! | AAAAAAAAACAATTACAACA+AGG | - | chr1_4:49166373-49166392 | None:intergenic | 15.0% |
| !! | TATTAATACTATTCTTTACT+AGG | - | chr1_4:49167233-49167252 | None:intergenic | 15.0% |
| !! | ACAATAAAAGATATAATTAG+AGG | + | chr1_4:49167275-49167294 | Msa0167270:intron | 15.0% |
| !!! | TCAAAAAAGAAAAAAGCATA+CGG | + | chr1_4:49163927-49163946 | Msa0167270:five_prime_UTR | 20.0% |
| !!! | TATTCTAGAGAAAATGAAAT+AGG | + | chr1_4:49163952-49163971 | Msa0167270:five_prime_UTR | 20.0% |
| !!! | TTTTATTCATACAATTCAGT+TGG | - | chr1_4:49164432-49164451 | None:intergenic | 20.0% |
| !!! | ATGTTGATTATTACCTTTAT+AGG | + | chr1_4:49165401-49165420 | Msa0167270:intron | 20.0% |
| !! | ATAATCAAGATATATGTAGA+TGG | + | chr1_4:49165478-49165497 | Msa0167270:CDS | 20.0% |
| !! | TAATCAAGATATATGTAGAT+GGG | + | chr1_4:49165479-49165498 | Msa0167270:CDS | 20.0% |
| !! | ATTTATATAAAGGACTGATA+AGG | + | chr1_4:49165617-49165636 | Msa0167270:intron | 20.0% |
| !!! | TATTTTGTTAAGGTTGAAAT+AGG | + | chr1_4:49166168-49166187 | Msa0167270:intron | 20.0% |
| !!! | AAAAAAAAAGAAGTACTCAA+AGG | - | chr1_4:49167201-49167220 | None:intergenic | 20.0% |
| !! | AAACTACTATTTGTGTAAAT+AGG | + | chr1_4:49167781-49167800 | Msa0167270:intron | 20.0% |
| !!! | TTTTTTCACATTAGTAATGT+TGG | + | chr1_4:49167835-49167854 | Msa0167270:intron | 20.0% |
| !!! | ATAATTTCATTTTTGCAGTA+CGG | + | chr1_4:49167862-49167881 | Msa0167270:intron | 20.0% |
| !!! | AATTTAACTTGGTAGAATTA+AGG | + | chr1_4:49168204-49168223 | Msa0167270:three_prime_UTR | 20.0% |
| !!! | TCACATTTTTTGATTAAACT+TGG | - | chr1_4:49168381-49168400 | None:intergenic | 20.0% |
| ! | TTCTTTCGAAATCAAAATTC+AGG | + | chr1_4:49164012-49164031 | Msa0167270:five_prime_UTR | 25.0% |
| ! | GAAGAAAATTGAGAAATTTG+AGG | - | chr1_4:49164103-49164122 | None:intergenic | 25.0% |
| !! | AATTTTCTTCAAGCATTTGT+TGG | + | chr1_4:49164113-49164132 | Msa0167270:CDS | 25.0% |
| ! | AATTGTTACCAATTTACCTA+CGG | + | chr1_4:49164639-49164658 | Msa0167270:intron | 25.0% |
| !!! | GATTTGTTTTGATGTTTTGA+AGG | + | chr1_4:49164869-49164888 | Msa0167270:intron | 25.0% |
| !!! | ATTTTTCACTTGATGATGAT+AGG | + | chr1_4:49164943-49164962 | Msa0167270:intron | 25.0% |
| !!! | GTTAATTTGTGTTGAATACT+TGG | + | chr1_4:49165132-49165151 | Msa0167270:intron | 25.0% |
| !!! | ATGTTTTTAAAGAGAGTATG+GGG | - | chr1_4:49165337-49165356 | None:intergenic | 25.0% |
| !!! | CATGTTTTTAAAGAGAGTAT+GGG | - | chr1_4:49165338-49165357 | None:intergenic | 25.0% |
| ! | ATAGCTATTGGAAATAAAAG+AGG | + | chr1_4:49165836-49165855 | Msa0167270:intron | 25.0% |
| ! | TAGCTATTGGAAATAAAAGA+GGG | + | chr1_4:49165837-49165856 | Msa0167270:intron | 25.0% |
| !! | AGACAAATTAGTTTGAATTG+AGG | + | chr1_4:49166040-49166059 | Msa0167270:intron | 25.0% |
| !!! | CTTTTGATTTCAAACTTTAC+TGG | + | chr1_4:49166078-49166097 | Msa0167270:intron | 25.0% |
| !! | ATATTTGTAAGTATGGACTA+TGG | + | chr1_4:49166112-49166131 | Msa0167270:intron | 25.0% |
| !!! | CTACTCTGTTTATTTTGTTA+AGG | + | chr1_4:49166158-49166177 | Msa0167270:intron | 25.0% |
| ! | ATTACAACAAGGTATGAAAA+AGG | - | chr1_4:49166362-49166381 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTTTCAACCTC+AGG | + | chr1_4:49166383-49166402 | Msa0167270:intron | 25.0% |
| !! | TTTTACAATATGACTACAAC+CGG | - | chr1_4:49166725-49166744 | None:intergenic | 25.0% |
| ! | AAAACAGCTTATAAGTTAGA+AGG | + | chr1_4:49167131-49167150 | Msa0167270:intron | 25.0% |
| !!! | TTAGAAGGCATTTTGTTTTT+GGG | + | chr1_4:49167146-49167165 | Msa0167270:intron | 25.0% |
| !!! | TCTAATTACCATTTTTACTC+TGG | + | chr1_4:49167570-49167589 | Msa0167270:intron | 25.0% |
| !!! | CTAATTACCATTTTTACTCT+GGG | + | chr1_4:49167571-49167590 | Msa0167270:intron | 25.0% |
| ! | CATTATGATTCATAACAGAA+TGG | + | chr1_4:49167719-49167738 | Msa0167270:intron | 25.0% |
| ! | TTGTAGTGTGAAATTTAACT+TGG | + | chr1_4:49168193-49168212 | Msa0167270:three_prime_UTR | 25.0% |
| GAAAATTGAGAAATTTGAGG+AGG | - | chr1_4:49164100-49164119 | None:intergenic | 30.0% | |
| CAATTCTTCTCTATTCCATA+TGG | + | chr1_4:49164141-49164160 | Msa0167270:CDS | 30.0% | |
| ATTTGTGAGTGGAAAATGAA+GGG | - | chr1_4:49164290-49164309 | None:intergenic | 30.0% | |
| AATTTGTGAGTGGAAAATGA+AGG | - | chr1_4:49164291-49164310 | None:intergenic | 30.0% | |
| AATTTCATGCAATTTGTGAG+TGG | - | chr1_4:49164301-49164320 | None:intergenic | 30.0% | |
| ! | GCTTGGAGTTAATTTTCAAA+CGG | + | chr1_4:49164541-49164560 | Msa0167270:intron | 30.0% |
| ! | TCAATTATCCTTTTGTGAGT+TGG | + | chr1_4:49164591-49164610 | Msa0167270:intron | 30.0% |
| ! | CAATTATCCTTTTGTGAGTT+GGG | + | chr1_4:49164592-49164611 | Msa0167270:intron | 30.0% |
| ATTGTTACCAATTTACCTAC+GGG | + | chr1_4:49164640-49164659 | Msa0167270:intron | 30.0% | |
| GTCACAGAGAATGAATAATT+TGG | + | chr1_4:49164755-49164774 | Msa0167270:intron | 30.0% | |
| ! | TTTGGTTTACCAGTGTAATT+AGG | + | chr1_4:49164773-49164792 | Msa0167270:intron | 30.0% |
| CAATCTAATCCTAATTACAC+TGG | - | chr1_4:49164785-49164804 | None:intergenic | 30.0% | |
| ATTGCAGCTGAGATTATTAA+TGG | + | chr1_4:49165026-49165045 | Msa0167270:CDS | 30.0% | |
| ! | GTTTTGTATCCTACTTAAAG+CGG | + | chr1_4:49165060-49165079 | Msa0167270:intron | 30.0% |
| ! | AATAAAACTCCGCTTTAAGT+AGG | - | chr1_4:49165072-49165091 | None:intergenic | 30.0% |
| AGTTTGGATAATCTCTTGTT+CGG | + | chr1_4:49165106-49165125 | Msa0167270:intron | 30.0% | |
| ! | GTATACTGGCATTTTCAAAA+AGG | - | chr1_4:49165222-49165241 | None:intergenic | 30.0% |
| !! | CCATGTTTTTAAAGAGAGTA+TGG | - | chr1_4:49165339-49165358 | None:intergenic | 30.0% |
| ! | CCATACTCTCTTTAAAAACA+TGG | + | chr1_4:49165336-49165355 | Msa0167270:intron | 30.0% |
| ATACTACAGTCGTTAGAAAA+GGG | - | chr1_4:49165383-49165402 | None:intergenic | 30.0% | |
| ATTACCTTTATAGGATCTTC+CGG | + | chr1_4:49165410-49165429 | Msa0167270:intron | 30.0% | |
| TATATAAAGGACTGATAAGG+TGG | + | chr1_4:49165620-49165639 | Msa0167270:intron | 30.0% | |
| !!! | ATCATACTTTTTTTCGGTTG+TGG | + | chr1_4:49165796-49165815 | Msa0167270:intron | 30.0% |
| AATAAAAGAGGGTAAACCAT+CGG | + | chr1_4:49165848-49165867 | Msa0167270:intron | 30.0% | |
| AGGATCACTAAAATAGTCAT+TGG | - | chr1_4:49165893-49165912 | None:intergenic | 30.0% | |
| TGATCCTTCTTACATATTAG+AGG | + | chr1_4:49165906-49165925 | Msa0167270:intron | 30.0% | |
| ACTGAATCAATCCAAATGAA+GGG | - | chr1_4:49166016-49166035 | None:intergenic | 30.0% | |
| TGATTTCAAACTTTACTGGT+TGG | + | chr1_4:49166082-49166101 | Msa0167270:intron | 30.0% | |
| ! | GATTTCAAACTTTACTGGTT+GGG | + | chr1_4:49166083-49166102 | Msa0167270:intron | 30.0% |
| GTGCAACATATTTGTAAGTA+TGG | + | chr1_4:49166105-49166124 | Msa0167270:intron | 30.0% | |
| TAAGGTTGAAATAGGAAAAC+AGG | + | chr1_4:49166176-49166195 | Msa0167270:intron | 30.0% | |
| !!! | ATGAATGAAAGGCATTTTCT+GGG | + | chr1_4:49166333-49166352 | Msa0167270:intron | 30.0% |
| GTCATGTGCATAATCATTAA+TGG | + | chr1_4:49166636-49166655 | Msa0167270:intron | 30.0% | |
| GTCAAGAGTTTGTAAAATAG+AGG | + | chr1_4:49166694-49166713 | Msa0167270:intron | 30.0% | |
| ! | TATTGTAAAAGTATGTGCCA+TGG | + | chr1_4:49166735-49166754 | Msa0167270:intron | 30.0% |
| TTTGCAAATCGAAGTTTGAA+TGG | - | chr1_4:49166935-49166954 | None:intergenic | 30.0% | |
| !!! | AAGCTGTTTTTCTGTACATT+GGG | - | chr1_4:49167121-49167140 | None:intergenic | 30.0% |
| !!! | TAAGCTGTTTTTCTGTACAT+TGG | - | chr1_4:49167122-49167141 | None:intergenic | 30.0% |
| !!! | GTTAGAAGGCATTTTGTTTT+TGG | + | chr1_4:49167145-49167164 | Msa0167270:intron | 30.0% |
| !!! | TAGAAGGCATTTTGTTTTTG+GGG | + | chr1_4:49167147-49167166 | Msa0167270:intron | 30.0% |
| GGTTGAATAAACAGCTTATT+AGG | + | chr1_4:49167168-49167187 | Msa0167270:intron | 30.0% | |
| ATAAACAGCTTATTAGGCAT+TGG | + | chr1_4:49167174-49167193 | Msa0167270:intron | 30.0% | |
| TAAACAGCTTATTAGGCATT+GGG | + | chr1_4:49167175-49167194 | Msa0167270:intron | 30.0% | |
| ! | TTGCAATTTTGTCCTTTAGT+AGG | + | chr1_4:49167348-49167367 | Msa0167270:intron | 30.0% |
| ! | TCAAAACTTTCAAGCTGTTT+TGG | + | chr1_4:49167473-49167492 | Msa0167270:intron | 30.0% |
| !! | GAATCTCGTTTTTGTATTCT+GGG | + | chr1_4:49168226-49168245 | Msa0167270:three_prime_UTR | 30.0% |
| !! | AATCTCGTTTTTGTATTCTG+GGG | + | chr1_4:49168227-49168246 | Msa0167270:three_prime_UTR | 30.0% |
| TTTCTCAATTGAATATGCAC+AGG | + | chr1_4:49168276-49168295 | Msa0167270:three_prime_UTR | 30.0% | |
| ATGCCTTGAATTCTGTTAAT+AGG | + | chr1_4:49168321-49168340 | Msa0167270:three_prime_UTR | 30.0% | |
| CAACCTATTAACAGAATTCA+AGG | - | chr1_4:49168327-49168346 | None:intergenic | 30.0% | |
| TAAACTTGGCTCAAAAAATC+TGG | - | chr1_4:49168367-49168386 | None:intergenic | 30.0% | |
| !!! | AATCGCATTTTTAGGGTTTC+TGG | - | chr1_4:49164050-49164069 | None:intergenic | 35.0% |
| ! | GCAATGGAATCGCATTTTTA+GGG | - | chr1_4:49164057-49164076 | None:intergenic | 35.0% |
| ! | AGCAATGGAATCGCATTTTT+AGG | - | chr1_4:49164058-49164077 | None:intergenic | 35.0% |
| AAATTTGAGGAGGAATGCTA+AGG | - | chr1_4:49164090-49164109 | None:intergenic | 35.0% | |
| CATATGGATGCTCAATCAAT+GGG | + | chr1_4:49164157-49164176 | Msa0167270:CDS | 35.0% | |
| TGATATCGGAAGTGAATTGA+GGG | - | chr1_4:49164244-49164263 | None:intergenic | 35.0% | |
| TTGATATCGGAAGTGAATTG+AGG | - | chr1_4:49164245-49164264 | None:intergenic | 35.0% | |
| TGCAGAGACATTTGATATGT+CGG | - | chr1_4:49164405-49164424 | None:intergenic | 35.0% | |
| ATGAACTACTTTGTCATGCT+TGG | + | chr1_4:49164524-49164543 | Msa0167270:intron | 35.0% | |
| ATAATCACCCAACTCACAAA+AGG | - | chr1_4:49164602-49164621 | None:intergenic | 35.0% | |
| !! | TTTTGTGAGTTGGGTGATTA+TGG | + | chr1_4:49164601-49164620 | Msa0167270:intron | 35.0% |
| TTGTTACCAATTTACCTACG+GGG | + | chr1_4:49164641-49164660 | Msa0167270:intron | 35.0% | |
| AGAGCATATTATGTTGCAAG+AGG | + | chr1_4:49164682-49164701 | Msa0167270:intron | 35.0% | |
| TAGGTTCATCTATGCTTTCA+TGG | + | chr1_4:49164962-49164981 | Msa0167270:intron | 35.0% | |
| AGGTTCATCTATGCTTTCAT+GGG | + | chr1_4:49164963-49164982 | Msa0167270:intron | 35.0% | |
| ! | TGGCATTTTCAAAAAGGTCA+AGG | - | chr1_4:49165216-49165235 | None:intergenic | 35.0% |
| CCAGTATACAGTACTAATCA+CGG | + | chr1_4:49165233-49165252 | Msa0167270:intron | 35.0% | |
| TCATTGCAATTGATCGTCAA+TGG | + | chr1_4:49165289-49165308 | Msa0167270:CDS | 35.0% | |
| CATACTACAGTCGTTAGAAA+AGG | - | chr1_4:49165384-49165403 | None:intergenic | 35.0% | |
| CAAGATATATGTAGATGGGT+TGG | + | chr1_4:49165483-49165502 | Msa0167270:CDS | 35.0% | |
| ! | AATTGCTGTTCTTGTAGTTC+AGG | + | chr1_4:49165506-49165525 | Msa0167270:CDS | 35.0% |
| ATGAGTGGTCACAAAAAAGT+AGG | - | chr1_4:49165570-49165589 | None:intergenic | 35.0% | |
| !!! | ACTTTTTTGTGACCACTCAT+TGG | + | chr1_4:49165570-49165589 | Msa0167270:intron | 35.0% |
| !! | TCAGCTGTTACTTTGTTAGT+AGG | - | chr1_4:49165720-49165739 | None:intergenic | 35.0% |
| AACGCCTCTAATATGTAAGA+AGG | - | chr1_4:49165913-49165932 | None:intergenic | 35.0% | |
| CTGAATCAATCCAAATGAAG+GGG | - | chr1_4:49166015-49166034 | None:intergenic | 35.0% | |
| CACTGAATCAATCCAAATGA+AGG | - | chr1_4:49166017-49166036 | None:intergenic | 35.0% | |
| GTTTGAATTGAGGAGATGAT+AGG | + | chr1_4:49166050-49166069 | Msa0167270:intron | 35.0% | |
| CATACACAATTAAATGTGCC+AGG | - | chr1_4:49166231-49166250 | None:intergenic | 35.0% | |
| AATTGCACTGCATGAATGAA+AGG | + | chr1_4:49166322-49166341 | Msa0167270:intron | 35.0% | |
| !!! | CATGAATGAAAGGCATTTTC+TGG | + | chr1_4:49166332-49166351 | Msa0167270:intron | 35.0% |
| CCAGACTGATGATTTAATAG+GGG | - | chr1_4:49166513-49166532 | None:intergenic | 35.0% | |
| GCCAGACTGATGATTTAATA+GGG | - | chr1_4:49166514-49166533 | None:intergenic | 35.0% | |
| ATCGTAAACAAAACTGTGCT+TGG | + | chr1_4:49166834-49166853 | Msa0167270:intron | 35.0% | |
| TCGTAAACAAAACTGTGCTT+GGG | + | chr1_4:49166835-49166854 | Msa0167270:intron | 35.0% | |
| GTCAACTATCCCTTTAGATT+AGG | + | chr1_4:49167056-49167075 | Msa0167270:intron | 35.0% | |
| TATCCCTTTAGATTAGGTCT+AGG | + | chr1_4:49167062-49167081 | Msa0167270:intron | 35.0% | |
| TGACCTAGACCTAATCTAAA+GGG | - | chr1_4:49167068-49167087 | None:intergenic | 35.0% | |
| ATGACCTAGACCTAATCTAA+AGG | - | chr1_4:49167069-49167088 | None:intergenic | 35.0% | |
| TTTAGATTAGGTCTAGGTCA+TGG | + | chr1_4:49167068-49167087 | Msa0167270:intron | 35.0% | |
| TTTGCATCCCAGAGTAAAAA+TGG | - | chr1_4:49167581-49167600 | None:intergenic | 35.0% | |
| CAAACCACAAACCAAAAAGA+AGG | - | chr1_4:49168046-49168065 | None:intergenic | 35.0% | |
| CTTCAGAGAACAACAACAAT+TGG | - | chr1_4:49168122-49168141 | None:intergenic | 35.0% | |
| !! | GGAATCTCGTTTTTGTATTC+TGG | + | chr1_4:49168225-49168244 | Msa0167270:three_prime_UTR | 35.0% |
| CTAAGGAAAAATGGCAGCAA+TGG | - | chr1_4:49164073-49164092 | None:intergenic | 40.0% | |
| GGAGGAATGCTAAGGAAAAA+TGG | - | chr1_4:49164082-49164101 | None:intergenic | 40.0% | |
| ! | CCATTGATTGAGCATCCATA+TGG | - | chr1_4:49164159-49164178 | None:intergenic | 40.0% |
| CCATATGGATGCTCAATCAA+TGG | + | chr1_4:49164156-49164175 | Msa0167270:CDS | 40.0% | |
| GATATCGGAAGTGAATTGAG+GGG | - | chr1_4:49164243-49164262 | None:intergenic | 40.0% | |
| AAAATGAAGGGAACGAACCA+AGG | - | chr1_4:49164278-49164297 | None:intergenic | 40.0% | |
| CAGAGACATTTGATATGTCG+GGG | - | chr1_4:49164403-49164422 | None:intergenic | 40.0% | |
| GCAGAGACATTTGATATGTC+GGG | - | chr1_4:49164404-49164423 | None:intergenic | 40.0% | |
| !!! | TTTTGGTTTTGGGTACTGTG+AGG | + | chr1_4:49164465-49164484 | Msa0167270:intron | 40.0% |
| TGTTACCAATTTACCTACGG+GGG | + | chr1_4:49164642-49164661 | Msa0167270:intron | 40.0% | |
| GAATCTACACTGCTTCTTTG+TGG | + | chr1_4:49164847-49164866 | Msa0167270:intron | 40.0% | |
| ATCTATGCTTTCATGGGTGT+GGG | + | chr1_4:49164969-49164988 | Msa0167270:CDS | 40.0% | |
| TTTCATGGGTGTGGGAATAT+TGG | + | chr1_4:49164977-49164996 | Msa0167270:CDS | 40.0% | |
| CCGTGATTAGTACTGTATAC+TGG | - | chr1_4:49165236-49165255 | None:intergenic | 40.0% | |
| AATTGATCGTCAATGGCAAG+AGG | + | chr1_4:49165296-49165315 | Msa0167270:CDS | 40.0% | |
| ! | TTTAAAGAGAGTATGGGGTG+AGG | - | chr1_4:49165332-49165351 | None:intergenic | 40.0% |
| TCAACCGGAAGATCCTATAA+AGG | - | chr1_4:49165417-49165436 | None:intergenic | 40.0% | |
| !! | TTTCTGCTGCCTTTTGCTAT+TGG | + | chr1_4:49165537-49165556 | Msa0167270:intron | 40.0% |
| !!! | TGCCTTTTGCTATTGGCATT+TGG | + | chr1_4:49165544-49165563 | Msa0167270:intron | 40.0% |
| CTTACTCGTTTACCAATGAG+TGG | - | chr1_4:49165585-49165604 | None:intergenic | 40.0% | |
| TAAGGTGGCTTAGTGGTTTA+AGG | + | chr1_4:49165635-49165654 | Msa0167270:intron | 40.0% | |
| AAGGTGGCTTAGTGGTTTAA+GGG | + | chr1_4:49165636-49165655 | Msa0167270:intron | 40.0% | |
| ! | ACTCGTTGGAGTGATAATGA+AGG | + | chr1_4:49165677-49165696 | Msa0167270:intron | 40.0% |
| ! | CTCGTTGGAGTGATAATGAA+GGG | + | chr1_4:49165678-49165697 | Msa0167270:intron | 40.0% |
| GAAGATTCAGTGTACACTCA+TGG | - | chr1_4:49165949-49165968 | None:intergenic | 40.0% | |
| CTAGATGGATGAACTTCGTA+GGG | - | chr1_4:49165973-49165992 | None:intergenic | 40.0% | |
| TCTAGATGGATGAACTTCGT+AGG | - | chr1_4:49165974-49165993 | None:intergenic | 40.0% | |
| !! | GGAGCAAGAAAAGTTCTAGA+TGG | - | chr1_4:49165988-49166007 | None:intergenic | 40.0% |
| ACCTCAGGCATTATCTCTAT+TGG | + | chr1_4:49166398-49166417 | Msa0167270:intron | 40.0% | |
| ACCAATAGAGATAATGCCTG+AGG | - | chr1_4:49166402-49166421 | None:intergenic | 40.0% | |
| !!! | AAGAGCAGATTTTGATGACG+AGG | + | chr1_4:49166455-49166474 | Msa0167270:CDS | 40.0% |
| ACGAGGAGGAATATGATGTT+AGG | + | chr1_4:49166472-49166491 | Msa0167270:CDS | 40.0% | |
| CGAGGAGGAATATGATGTTA+GGG | + | chr1_4:49166473-49166492 | Msa0167270:CDS | 40.0% | |
| GAGGAGGAATATGATGTTAG+GGG | + | chr1_4:49166474-49166493 | Msa0167270:CDS | 40.0% | |
| ATGATGTTAGGGGTAGAAGT+TGG | + | chr1_4:49166484-49166503 | Msa0167270:CDS | 40.0% | |
| TGATGTTAGGGGTAGAAGTT+GGG | + | chr1_4:49166485-49166504 | Msa0167270:CDS | 40.0% | |
| CCCCTATTAAATCATCAGTC+TGG | + | chr1_4:49166510-49166529 | Msa0167270:CDS | 40.0% | |
| GGCCAGACTGATGATTTAAT+AGG | - | chr1_4:49166515-49166534 | None:intergenic | 40.0% | |
| TTGTAAAATAGAGGCTGAGC+CGG | + | chr1_4:49166703-49166722 | Msa0167270:intron | 40.0% | |
| ! | TGATCAAGGTCGAGTTTTCT+AGG | + | chr1_4:49166807-49166826 | Msa0167270:intron | 40.0% |
| ATGGAGCGAGAACGAATTTA+GGG | - | chr1_4:49166916-49166935 | None:intergenic | 40.0% | |
| AATGGAGCGAGAACGAATTT+AGG | - | chr1_4:49166917-49166936 | None:intergenic | 40.0% | |
| TTCTGTACATTGGGCCTTAA+GGG | - | chr1_4:49167112-49167131 | None:intergenic | 40.0% | |
| TTTCTGTACATTGGGCCTTA+AGG | - | chr1_4:49167113-49167132 | None:intergenic | 40.0% | |
| GATTGGTAAGCTCCTACTAA+AGG | - | chr1_4:49167363-49167382 | None:intergenic | 40.0% | |
| ATGAAAGATCGGAACACGAT+TGG | - | chr1_4:49167380-49167399 | None:intergenic | 40.0% | |
| ATCGTGTTCCGATCTTTCAT+CGG | + | chr1_4:49167380-49167399 | Msa0167270:intron | 40.0% | |
| TCAAACACGAGATTGCAAGT+AGG | - | chr1_4:49167415-49167434 | None:intergenic | 40.0% | |
| ATCTCGTGTTTGACTACACT+TGG | + | chr1_4:49167422-49167441 | Msa0167270:intron | 40.0% | |
| ACCAATATGAGTGTGTTCTG+CGG | + | chr1_4:49167601-49167620 | Msa0167270:intron | 40.0% | |
| ! | TTGCAGTACGGATTGAACAA+TGG | + | chr1_4:49167874-49167893 | Msa0167270:intron | 40.0% |
| !! | AAGAAGGAGAGGTGTGTTTT+TGG | - | chr1_4:49168030-49168049 | None:intergenic | 40.0% |
| ! | AACACACCTCTCCTTCTTTT+TGG | + | chr1_4:49168032-49168051 | Msa0167270:three_prime_UTR | 40.0% |
| CACAAACCAAAAAGAAGGAG+AGG | - | chr1_4:49168041-49168060 | None:intergenic | 40.0% | |
| !!! | CTCTCCTTCTTTTTGGTTTG+TGG | + | chr1_4:49168039-49168058 | Msa0167270:three_prime_UTR | 40.0% |
| CAGAGAACAACAACAATTGG+AGG | - | chr1_4:49168119-49168138 | None:intergenic | 40.0% | |
| ! | TCTCAGTTCTGCACAGATTT+TGG | + | chr1_4:49168146-49168165 | Msa0167270:three_prime_UTR | 40.0% |
| AGGAAGAGAGAGGGAAAGAT+GGG | - | chr1_4:49164210-49164229 | None:intergenic | 45.0% | |
| GGAAGTGAATTGAGGGGAAA+AGG | - | chr1_4:49164237-49164256 | None:intergenic | 45.0% | |
| AGGAGCGGGAAGATTGATAT+CGG | - | chr1_4:49164258-49164277 | None:intergenic | 45.0% | |
| ATATCAATCTTCCCGCTCCT+TGG | + | chr1_4:49164258-49164277 | Msa0167270:CDS | 45.0% | |
| GTCGGGGTGTAGATAATTCT+CGG | - | chr1_4:49164387-49164406 | None:intergenic | 45.0% | |
| GTTACCAATTTACCTACGGG+GGG | + | chr1_4:49164643-49164662 | Msa0167270:intron | 45.0% | |
| ! | CTGTAAAGACTAGTCACTCG+AGG | - | chr1_4:49164731-49164750 | None:intergenic | 45.0% |
| CATCTATGCTTTCATGGGTG+TGG | + | chr1_4:49164968-49164987 | Msa0167270:CDS | 45.0% | |
| GTGTGCTGCATTGCTTTCTT+TGG | + | chr1_4:49164999-49165018 | Msa0167270:CDS | 45.0% | |
| TGTTCTACTTGAGGCTGCTT+TGG | + | chr1_4:49165260-49165279 | Msa0167270:CDS | 45.0% | |
| ATTTGACCGGTTGGATCAAC+CGG | - | chr1_4:49165432-49165451 | None:intergenic | 45.0% | |
| TCGAAGACTCGCAATTTGAC+CGG | - | chr1_4:49165445-49165464 | None:intergenic | 45.0% | |
| GGCCAAATGCCAATAGCAAA+AGG | - | chr1_4:49165549-49165568 | None:intergenic | 45.0% | |
| AGGTGGCTTAGTGGTTTAAG+GGG | + | chr1_4:49165637-49165656 | Msa0167270:intron | 45.0% | |
| !! | TACTCTGAAGTCTGAACCGA+TGG | - | chr1_4:49165867-49165886 | None:intergenic | 45.0% |
| CAATCCAAATGAAGGGGAGA+GGG | - | chr1_4:49166009-49166028 | None:intergenic | 45.0% | |
| TCAATCCAAATGAAGGGGAG+AGG | - | chr1_4:49166010-49166029 | None:intergenic | 45.0% | |
| ! | CCAGGCAAAGCGTTTAATCT+AGG | - | chr1_4:49166213-49166232 | None:intergenic | 45.0% |
| CCTAGATTAAACGCTTTGCC+TGG | + | chr1_4:49166210-49166229 | Msa0167270:intron | 45.0% | |
| TGCTCTTCGAGTAGAAACTG+TGG | - | chr1_4:49166442-49166461 | None:intergenic | 45.0% | |
| !!! | AGCAGATTTTGATGACGAGG+AGG | + | chr1_4:49166458-49166477 | Msa0167270:CDS | 45.0% |
| TCAAGCAAAGGCGATATCAG+AGG | + | chr1_4:49166546-49166565 | Msa0167270:CDS | 45.0% | |
| ! | TCTCTGACGTTTGGAGTTCA+CGG | + | chr1_4:49166574-49166593 | Msa0167270:CDS | 45.0% |
| ! | AGAGAAGGTATGCTACTCTG+AGG | + | chr1_4:49166602-49166621 | Msa0167270:intron | 45.0% |
| ATCTGAGAAGGATCGCTGTT+CGG | + | chr1_4:49166776-49166795 | Msa0167270:intron | 45.0% | |
| GTTCGGTCAGTTCATGATCA+AGG | + | chr1_4:49166793-49166812 | Msa0167270:intron | 45.0% | |
| ! | TGTGCTTGGGTCACTGTTTT+GGG | + | chr1_4:49166848-49166867 | Msa0167270:intron | 45.0% |
| GTCGGGTTTGGGGAAAAAAT+TGG | + | chr1_4:49166870-49166889 | Msa0167270:intron | 45.0% | |
| GATTAGGTCTAGGTCATGGT+TGG | + | chr1_4:49167072-49167091 | Msa0167270:intron | 45.0% | |
| TCATGGTTGGAGACAAAGTC+TGG | + | chr1_4:49167085-49167104 | Msa0167270:intron | 45.0% | |
| CATGGTTGGAGACAAAGTCT+GGG | + | chr1_4:49167086-49167105 | Msa0167270:intron | 45.0% | |
| AGATTGCAAGTAGGACTGGA+AGG | - | chr1_4:49167406-49167425 | None:intergenic | 45.0% | |
| ACCGCAGAACACACTCATAT+TGG | - | chr1_4:49167605-49167624 | None:intergenic | 45.0% | |
| CGCAATAGACAACACTGAAC+AGG | - | chr1_4:49167668-49167687 | None:intergenic | 45.0% | |
| CAGAGTCTGCTCGATTACAT+TGG | + | chr1_4:49167810-49167829 | Msa0167270:intron | 45.0% | |
| AGTTACGAAGCGTGAGTTAC+AGG | + | chr1_4:49167907-49167926 | Msa0167270:exon | 45.0% | |
| AGCTGTCAAGCAATTCAGTG+TGG | + | chr1_4:49167944-49167963 | Msa0167270:three_prime_UTR | 45.0% | |
| GAACAACAACAATTGGAGGC+TGG | - | chr1_4:49168115-49168134 | None:intergenic | 45.0% | |
| !!! | CGTTTTTGTATTCTGGGGTG+AGG | + | chr1_4:49168232-49168251 | Msa0167270:three_prime_UTR | 45.0% |
| ! | AGTCGTCAGTGTTGTTGCTT+TGG | + | chr1_4:49168401-49168420 | Msa0167270:three_prime_UTR | 45.0% |
| !! | GTCGTCAGTGTTGTTGCTTT+GGG | + | chr1_4:49168402-49168421 | Msa0167270:three_prime_UTR | 45.0% |
| !!! | AAAATGTTTTTTTTTTTTTT+TGG | + | chr1_4:49164448-49164467 | Msa0167270:intron | 5.0% |
| GGAAGAGAGAGGGAAAGATG+GGG | - | chr1_4:49164209-49164228 | None:intergenic | 50.0% | |
| GAGGAAGAGAGAGGGAAAGA+TGG | - | chr1_4:49164211-49164230 | None:intergenic | 50.0% | |
| AAAGGAGCGAGGAAGAGAGA+GGG | - | chr1_4:49164219-49164238 | None:intergenic | 50.0% | |
| AAAAGGAGCGAGGAAGAGAG+AGG | - | chr1_4:49164220-49164239 | None:intergenic | 50.0% | |
| AATTGAGGGGAAAAGGAGCG+AGG | - | chr1_4:49164230-49164249 | None:intergenic | 50.0% | |
| CACGGCACTTGTTCTACTTG+AGG | + | chr1_4:49165251-49165270 | Msa0167270:CDS | 50.0% | |
| ! | TCTACTTGAGGCTGCTTTGG+TGG | + | chr1_4:49165263-49165282 | Msa0167270:CDS | 50.0% |
| GATCTTCCGGTTGATCCAAC+CGG | + | chr1_4:49165423-49165442 | Msa0167270:CDS | 50.0% | |
| AGACTCGCAATTTGACCGGT+TGG | - | chr1_4:49165441-49165460 | None:intergenic | 50.0% | |
| GGACTGATAAGGTGGCTTAG+TGG | + | chr1_4:49165628-49165647 | Msa0167270:intron | 50.0% | |
| GGCTTAGTGGTTTAAGGGGT+CGG | + | chr1_4:49165641-49165660 | Msa0167270:intron | 50.0% | |
| TGGTTTAAGGGGTCGGACAT+AGG | + | chr1_4:49165648-49165667 | Msa0167270:intron | 50.0% | |
| GGTTTAAGGGGTCGGACATA+GGG | + | chr1_4:49165649-49165668 | Msa0167270:intron | 50.0% | |
| GTTTAAGGGGTCGGACATAG+GGG | + | chr1_4:49165650-49165669 | Msa0167270:intron | 50.0% | |
| ATCAGTCTGGCCAAACAGCT+GGG | + | chr1_4:49166523-49166542 | Msa0167270:CDS | 50.0% | |
| CTTTGCTTGACCCAGCTGTT+TGG | - | chr1_4:49166536-49166555 | None:intergenic | 50.0% | |
| CAAACAGCTGGGTCAAGCAA+AGG | + | chr1_4:49166534-49166553 | Msa0167270:CDS | 50.0% | |
| GAGGAAACCTCTCTGACGTT+TGG | + | chr1_4:49166565-49166584 | Msa0167270:CDS | 50.0% | |
| GTGAACTCCAAACGTCAGAG+AGG | - | chr1_4:49166575-49166594 | None:intergenic | 50.0% | |
| GAGTTCACGGATGAGAGAGA+AGG | + | chr1_4:49166587-49166606 | Msa0167270:CDS | 50.0% | |
| TCTCAGATCGCAGCACACTA+CGG | - | chr1_4:49166764-49166783 | None:intergenic | 50.0% | |
| TAGTGTGCTGCGATCTGAGA+AGG | + | chr1_4:49166764-49166783 | Msa0167270:intron | 50.0% | |
| ! | CTGTGCTTGGGTCACTGTTT+TGG | + | chr1_4:49166847-49166866 | Msa0167270:intron | 50.0% |
| !! | CTTGGGTCACTGTTTTGGGT+CGG | + | chr1_4:49166852-49166871 | Msa0167270:intron | 50.0% |
| !! | TTGGGTCACTGTTTTGGGTC+GGG | + | chr1_4:49166853-49166872 | Msa0167270:intron | 50.0% |
| !! | TCACTGTTTTGGGTCGGGTT+TGG | + | chr1_4:49166858-49166877 | Msa0167270:intron | 50.0% |
| !! | CACTGTTTTGGGTCGGGTTT+GGG | + | chr1_4:49166859-49166878 | Msa0167270:intron | 50.0% |
| !! | ACTGTTTTGGGTCGGGTTTG+GGG | + | chr1_4:49166860-49166879 | Msa0167270:intron | 50.0% |
| ! | AGAGGAGATTTTGCGCAGCA+GGG | - | chr1_4:49167002-49167021 | None:intergenic | 50.0% |
| ! | AAGAGGAGATTTTGCGCAGC+AGG | - | chr1_4:49167003-49167022 | None:intergenic | 50.0% |
| AGACAAAGTCTGGGCCCTTA+AGG | + | chr1_4:49167095-49167114 | Msa0167270:intron | 50.0% | |
| CTGGAAGGCCGATGAAAGAT+CGG | - | chr1_4:49167391-49167410 | None:intergenic | 50.0% | |
| CACGAGATTGCAAGTAGGAC+TGG | - | chr1_4:49167410-49167429 | None:intergenic | 50.0% | |
| TCTGCGGTGTGTCATGGTTA+AGG | + | chr1_4:49167617-49167636 | Msa0167270:intron | 50.0% | |
| AGATGGGGAAGAGGTGGTTG+AGG | - | chr1_4:49164194-49164213 | None:intergenic | 55.0% | |
| AGGGAAAGATGGGGAAGAGG+TGG | - | chr1_4:49164200-49164219 | None:intergenic | 55.0% | |
| GAGAGGGAAAGATGGGGAAG+AGG | - | chr1_4:49164203-49164222 | None:intergenic | 55.0% | |
| AAGGGAACGAACCAAGGAGC+GGG | - | chr1_4:49164272-49164291 | None:intergenic | 55.0% | |
| GAAGGGAACGAACCAAGGAG+CGG | - | chr1_4:49164273-49164292 | None:intergenic | 55.0% | |
| CCAACCCCCCGTAGGTAAAT+TGG | - | chr1_4:49164650-49164669 | None:intergenic | 55.0% | |
| CCAATTTACCTACGGGGGGT+TGG | + | chr1_4:49164647-49164666 | Msa0167270:intron | 55.0% | |
| GACATAGGGGTTGGACTCGT+TGG | + | chr1_4:49165663-49165682 | Msa0167270:intron | 55.0% | |
| TGCTCCCTCTCCCCTTCATT+TGG | + | chr1_4:49166002-49166021 | Msa0167270:intron | 55.0% | |
| CATCAGTCTGGCCAAACAGC+TGG | + | chr1_4:49166522-49166541 | Msa0167270:CDS | 55.0% | |
| GGGACAGCGTCACAGGTTAA+GGG | - | chr1_4:49166965-49166984 | None:intergenic | 55.0% | |
| CCAGCAGCAAGGAACGAAAG+AGG | - | chr1_4:49167020-49167039 | None:intergenic | 55.0% | |
| CCTCTTTCGTTCCTTGCTGC+TGG | + | chr1_4:49167017-49167036 | Msa0167270:intron | 55.0% | |
| CCTCACACAAACCAGCAGCA+AGG | - | chr1_4:49167031-49167050 | None:intergenic | 55.0% | |
| !! | CCTTGCTGCTGGTTTGTGTG+AGG | + | chr1_4:49167028-49167047 | Msa0167270:intron | 55.0% |
| !! | TGCTGCTGGTTTGTGTGAGG+CGG | + | chr1_4:49167031-49167050 | Msa0167270:intron | 55.0% |
| GTGTGTTCTGCGGTGTGTCA+TGG | + | chr1_4:49167611-49167630 | Msa0167270:intron | 55.0% | |
| CACTAGAACCAACCCCCCGT+AGG | - | chr1_4:49164658-49164677 | None:intergenic | 60.0% | |
| !! | CTACGGGGGGTTGGTTCTAG+TGG | + | chr1_4:49164656-49164675 | Msa0167270:intron | 60.0% |
| AAGGGGTCGGACATAGGGGT+TGG | + | chr1_4:49165654-49165673 | Msa0167270:intron | 60.0% | |
| GGGGACAGCGTCACAGGTTA+AGG | - | chr1_4:49166966-49166985 | None:intergenic | 60.0% | |
| AGCAGGGACGAAGCGATTGG+GGG | - | chr1_4:49166986-49167005 | None:intergenic | 60.0% | |
| CAGCAGGGACGAAGCGATTG+GGG | - | chr1_4:49166987-49167006 | None:intergenic | 60.0% | |
| GCAGCAGGGACGAAGCGATT+GGG | - | chr1_4:49166988-49167007 | None:intergenic | 60.0% | |
| !! | TGCTGGTTTGTGTGAGGCGG+CGG | + | chr1_4:49167034-49167053 | Msa0167270:intron | 60.0% |
| GCAGCACACTACGGCAGCCA+TGG | - | chr1_4:49166755-49166774 | None:intergenic | 65.0% | |
| GATTGGGGGGACAGCGTCAC+AGG | - | chr1_4:49166972-49166991 | None:intergenic | 65.0% | |
| GCAGGGACGAAGCGATTGGG+GGG | - | chr1_4:49166985-49167004 | None:intergenic | 65.0% | |
| CGCAGCAGGGACGAAGCGAT+TGG | - | chr1_4:49166989-49167008 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49163887 | 49168445 | 49163887 | ID=Msa0167270;Name=Msa0167270 |
| chr1_4 | mRNA | 49163887 | 49168445 | 49163887 | ID=Msa0167270-mRNA-1;Parent=Msa0167270;Name=Msa0167270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|1|1|1|1|1|6|524|249 |
| chr1_4 | exon | 49163887 | 49164279 | 49163887 | ID=Msa0167270-mRNA-1:exon:14378;Parent=Msa0167270-mRNA-1 |
| chr1_4 | exon | 49164965 | 49165064 | 49164965 | ID=Msa0167270-mRNA-1:exon:14379;Parent=Msa0167270-mRNA-1 |
| chr1_4 | exon | 49165237 | 49165317 | 49165237 | ID=Msa0167270-mRNA-1:exon:14380;Parent=Msa0167270-mRNA-1 |
| chr1_4 | exon | 49165423 | 49165527 | 49165423 | ID=Msa0167270-mRNA-1:exon:14381;Parent=Msa0167270-mRNA-1 |
| chr1_4 | exon | 49166405 | 49166608 | 49166405 | ID=Msa0167270-mRNA-1:exon:14382;Parent=Msa0167270-mRNA-1 |
| chr1_4 | exon | 49167880 | 49168445 | 49167880 | ID=Msa0167270-mRNA-1:exon:14383;Parent=Msa0167270-mRNA-1 |
| chr1_4 | five_prime_UTR | 49163887 | 49164061 | 49163887 | ID=Msa0167270-mRNA-1:five_prime_utr;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49164062 | 49164279 | 49164062 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49164965 | 49165064 | 49164965 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49165237 | 49165317 | 49165237 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49165423 | 49165527 | 49165423 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49166405 | 49166608 | 49166405 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | CDS | 49167880 | 49167921 | 49167880 | ID=Msa0167270-mRNA-1:cds;Parent=Msa0167270-mRNA-1 |
| chr1_4 | three_prime_UTR | 49167922 | 49168445 | 49167922 | ID=Msa0167270-mRNA-1:three_prime_utr;Parent=Msa0167270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
