Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167410 | XP_013468448.1 | 96.774 | 713 | 23 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167410 | sp|Q66GN3|NPGR2_ARATH | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167410 | A0A072VWM1 | 96.774 | 713 | 23 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027310 | Msa0167410 | 0.858610 | 7.322264e-63 | -8.615850e-47 |
| Msa0123100 | Msa0167410 | 0.850839 | 1.310012e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167410 | MtrunA17_Chr1g0183461 | 96.774 | 713 | 23 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1425 |
| Msa0167410 | MtrunA17_Chr7g0261581 | 68.436 | 716 | 220 | 3 | 1 | 713 | 16 | 728 | 0.0 | 980 |
| Msa0167410 | MtrunA17_Chr1g0187271 | 57.858 | 719 | 289 | 7 | 1 | 713 | 22 | 732 | 0.0 | 785 |
| Msa0167410 | MtrunA17_Chr1g0152501 | 44.306 | 720 | 379 | 12 | 6 | 712 | 6 | 716 | 0.0 | 539 |
| Msa0167410 | MtrunA17_Chr5g0409291 | 49.733 | 561 | 278 | 3 | 40 | 600 | 26 | 582 | 2.97e-175 | 514 |
| Msa0167410 | MtrunA17_Chr8g0369551 | 46.379 | 580 | 307 | 3 | 29 | 608 | 10 | 585 | 1.44e-168 | 497 |
| Msa0167410 | MtrunA17_Chr8g0369541 | 39.048 | 105 | 61 | 1 | 608 | 712 | 20 | 121 | 3.04e-19 | 84.3 |
| Msa0167410 | MtrunA17_Chr5g0409281 | 40.000 | 105 | 59 | 2 | 609 | 712 | 9 | 110 | 8.54e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167410 | AT4G28600.1 | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 796 |
| Msa0167410 | AT4G28600.2 | 58.693 | 719 | 287 | 3 | 1 | 713 | 25 | 739 | 0.0 | 796 |
| Msa0167410 | AT4G28600.3 | 58.287 | 724 | 287 | 4 | 1 | 713 | 25 | 744 | 0.0 | 791 |
| Msa0167410 | AT2G43040.2 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 568 |
| Msa0167410 | AT2G43040.1 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 568 |
| Msa0167410 | AT1G27460.3 | 41.399 | 715 | 380 | 10 | 6 | 712 | 6 | 689 | 1.29e-164 | 490 |
| Msa0167410 | AT1G27460.1 | 41.818 | 715 | 381 | 10 | 6 | 712 | 6 | 693 | 2.20e-164 | 490 |
| Msa0167410 | AT1G27460.2 | 42.727 | 550 | 291 | 8 | 6 | 547 | 6 | 539 | 5.00e-127 | 389 |
Find 197 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCGGCGTTCTTTGTTTC+TGG | 0.051091 | 1_4:-49326794 | None:intergenic |
| TTTCCGGTTCACCATGATTA+TGG | 0.184771 | 1_4:-49326825 | None:intergenic |
| TTCATTTGCTCTGTCTGTTT+CGG | 0.188123 | 1_4:+49327705 | Msa0167410:CDS |
| TCATTTGCTCTGTCTGTTTC+GGG | 0.193859 | 1_4:+49327706 | Msa0167410:CDS |
| ATCGAGTTTAGCCAATTATT+TGG | 0.205375 | 1_4:+49327735 | Msa0167410:CDS |
| TACCCTCAGCCTTGTGAAAA+AGG | 0.205859 | 1_4:-49329228 | None:intergenic |
| CAGGCTCTTGAAAGGTTTAA+AGG | 0.236026 | 1_4:+49326907 | Msa0167410:CDS |
| CTATTATAGAAAAGTAATTA+AGG | 0.239293 | 1_4:+49325639 | Msa0167410:five_prime_UTR |
| ATCATCTGCACACTCAAAAT+TGG | 0.251662 | 1_4:+49328044 | Msa0167410:CDS |
| CCAATCTTGCAAAGTTATTA+TGG | 0.251753 | 1_4:+49327294 | Msa0167410:CDS |
| ATTAATAATAGTTTAGTTTA+GGG | 0.257156 | 1_4:+49325848 | Msa0167410:five_prime_UTR |
| CATTCAGCACCAAAGTTATC+AGG | 0.259185 | 1_4:-49327349 | None:intergenic |
| ACACGTTCCCGGTTTGTTAA+TGG | 0.260326 | 1_4:+49327891 | Msa0167410:CDS |
| GGCGAGCACTTCTTCATAAA+TGG | 0.260430 | 1_4:+49327464 | Msa0167410:CDS |
| GATTAATAATAGTTTAGTTT+AGG | 0.261713 | 1_4:+49325847 | Msa0167410:five_prime_UTR |
| TTTGTCAATTTGTATTTCTT+TGG | 0.265129 | 1_4:-49329577 | None:intergenic |
| GAGTAATTCTTCCAAATAAT+TGG | 0.272977 | 1_4:-49327746 | None:intergenic |
| CCATAATAACTTTGCAAGAT+TGG | 0.280709 | 1_4:-49327294 | None:intergenic |
| GTTTAGTTTAGGGACTAAAT+TGG | 0.282640 | 1_4:+49325858 | Msa0167410:five_prime_UTR |
| CGGATGAGGGGTTTGGAGTT+TGG | 0.285069 | 1_4:-49325464 | None:intergenic |
| CCATTTGAGAACGTAGATTA+GGG | 0.289798 | 1_4:-49327567 | None:intergenic |
| TTCTGCTTCTTCTATATTAC+CGG | 0.290062 | 1_4:-49326197 | None:intergenic |
| TCAGCAAGCTTCCACAATTC+TGG | 0.299846 | 1_4:-49327412 | None:intergenic |
| GCCTCTTCTATGTTGTTTGC+CGG | 0.304221 | 1_4:-49327604 | None:intergenic |
| CAAATTCAGAGCAAAAGTTT+TGG | 0.314010 | 1_4:+49328459 | Msa0167410:CDS |
| TGCAAAGTGCGTCATAAAAC+TGG | 0.329264 | 1_4:+49328221 | Msa0167410:CDS |
| AACAAACCGGGAACGTGTTC+CGG | 0.330656 | 1_4:-49327886 | None:intergenic |
| CATAATATATGAGCAAATTA+AGG | 0.332440 | 1_4:-49325896 | None:intergenic |
| TTATTCATGAACTATCTTGA+TGG | 0.338154 | 1_4:+49325825 | Msa0167410:five_prime_UTR |
| TTCCGGTTCACCATGATTAT+GGG | 0.345463 | 1_4:-49326824 | None:intergenic |
| CTCTAGAACACAACCCTTTG+AGG | 0.353424 | 1_4:-49329351 | None:intergenic |
| TTGGTTTGGTTTGTGAGAGT+GGG | 0.353739 | 1_4:-49325440 | None:intergenic |
| TTCTTGGAAGAAGCTATATA+AGG | 0.353884 | 1_4:+49328482 | Msa0167410:CDS |
| GATCTAGCTCTTTGTAATTA+CGG | 0.355641 | 1_4:+49327802 | Msa0167410:CDS |
| GAAAGGCCGGAACACGTTCC+CGG | 0.359395 | 1_4:+49327880 | Msa0167410:CDS |
| TCTAAAAGCAAAATCGTTGC+AGG | 0.362819 | 1_4:+49326888 | Msa0167410:CDS |
| GGAAGATACGAGTATCAAAA+AGG | 0.369028 | 1_4:+49326694 | Msa0167410:CDS |
| GAGGGGTTTGGAGTTTGGTT+TGG | 0.369356 | 1_4:-49325459 | None:intergenic |
| TACTGAAGGGTCTCTCATTC+CGG | 0.371242 | 1_4:-49328139 | None:intergenic |
| AATGGACGGCTCGTTTGTTC+CGG | 0.372709 | 1_4:+49327585 | Msa0167410:CDS |
| CATAATAACTTTGCAAGATT+GGG | 0.372836 | 1_4:-49327293 | None:intergenic |
| GTTTGGAGTTTGGTTTGGTT+TGG | 0.374752 | 1_4:-49325454 | None:intergenic |
| GGAACTTGGAAGTGGAAATA+TGG | 0.379485 | 1_4:+49328699 | Msa0167410:CDS |
| CATAGGAGAAGAGGTGAATC+TGG | 0.381742 | 1_4:+49326022 | Msa0167410:five_prime_UTR |
| TGAATCTTTGCTACAGTCCC+TGG | 0.383146 | 1_4:-49327496 | None:intergenic |
| GTGCGCACGGATGAGGGGTT+TGG | 0.383192 | 1_4:-49325471 | None:intergenic |
| GAAGGTGGTTCCAATGTTAA+AGG | 0.388143 | 1_4:+49328243 | Msa0167410:CDS |
| GTGAAGCTACTTTGTCTTAC+CGG | 0.388356 | 1_4:+49327443 | Msa0167410:CDS |
| AATGTTGCAAAATTCTATCT+TGG | 0.388770 | 1_4:+49328015 | Msa0167410:CDS |
| CTTTGGATCAGACTGGGAAA+TGG | 0.392510 | 1_4:+49328337 | Msa0167410:CDS |
| TCAGAGAGCACTTGAGAGCT+TGG | 0.397172 | 1_4:+49327969 | Msa0167410:CDS |
| TGTTAAAGGATGGTTACTAT+TGG | 0.397627 | 1_4:+49328257 | Msa0167410:CDS |
| GCGTTCTTTGTTTCTGGAAA+GGG | 0.399083 | 1_4:-49326788 | None:intergenic |
| ATCTATTATCAACGCTGCTT+TGG | 0.399909 | 1_4:+49328320 | Msa0167410:CDS |
| TCAGACTGGGAAATGGGATC+AGG | 0.402096 | 1_4:+49328344 | Msa0167410:CDS |
| GCTTCTGCTTGGTATAATCT+TGG | 0.405820 | 1_4:+49329205 | Msa0167410:CDS |
| CCTACGCTCAGGGGAGCAAT+TGG | 0.409024 | 1_4:+49326066 | Msa0167410:CDS |
| AAGTTATCAGGCAAGCCTTC+AGG | 0.409413 | 1_4:-49327337 | None:intergenic |
| ACAGAATGTATAGACATTTC+CGG | 0.415399 | 1_4:-49326841 | None:intergenic |
| TTTGGTTTGGTTTGTGAGAG+TGG | 0.417799 | 1_4:-49325441 | None:intergenic |
| TCCATTTGAGAACGTAGATT+AGG | 0.418331 | 1_4:-49327568 | None:intergenic |
| CCGAGATCGTGCTAGGAACT+TGG | 0.420476 | 1_4:+49328685 | Msa0167410:CDS |
| TTTAGAAGCCATTAACAAAC+CGG | 0.423076 | 1_4:-49327899 | None:intergenic |
| TATTATAGAAAAGTAATTAA+GGG | 0.428070 | 1_4:+49325640 | Msa0167410:five_prime_UTR |
| TGGTGCTGAATGTAAATTGC+AGG | 0.428911 | 1_4:+49327360 | Msa0167410:CDS |
| TAAAACCAAGTTAATAAAAC+AGG | 0.434883 | 1_4:-49325768 | None:intergenic |
| ATCTGAGGCACTTCAAGCCT+TGG | 0.438993 | 1_4:+49328098 | Msa0167410:CDS |
| TCTCTCTCAATAGAATTGAA+TGG | 0.439125 | 1_4:+49327659 | Msa0167410:CDS |
| GAATTTCTCGAAATCAGAAA+TGG | 0.439970 | 1_4:-49328067 | None:intergenic |
| GTACTTCAGCAGTGGAGATT+AGG | 0.444856 | 1_4:-49329105 | None:intergenic |
| CATGGAATCTTTCACTTCGA+TGG | 0.444879 | 1_4:-49327780 | None:intergenic |
| ACCCCTTCTTCTGCAAGACT+AGG | 0.448007 | 1_4:-49327937 | None:intergenic |
| GAAAAGTAATTAAGGGAGAA+AGG | 0.449801 | 1_4:+49325647 | Msa0167410:five_prime_UTR |
| TTCCCATAATCATGGTGAAC+CGG | 0.454699 | 1_4:+49326822 | Msa0167410:CDS |
| TTTGGATCAGACTGGGAAAT+GGG | 0.455022 | 1_4:+49328338 | Msa0167410:CDS |
| CTCTCTCAATAGAATTGAAT+GGG | 0.455430 | 1_4:+49327660 | Msa0167410:CDS |
| GGCGTTCTTTGTTTCTGGAA+AGG | 0.457269 | 1_4:-49326789 | None:intergenic |
| GGCGTGTCTTTCAAAATCTA+AGG | 0.457296 | 1_4:+49328772 | Msa0167410:CDS |
| GTAAGTAAAGTGGAAGATCT+AGG | 0.459735 | 1_4:-49325513 | None:intergenic |
| CCCCTTCTTCTGCAAGACTA+GGG | 0.461370 | 1_4:-49327936 | None:intergenic |
| CGGAGCAGGTAAGGACTTGA+TGG | 0.465727 | 1_4:+49327822 | Msa0167410:CDS |
| CCCTAATCTACGTTCTCAAA+TGG | 0.465907 | 1_4:+49327567 | Msa0167410:CDS |
| ATTAGGCTGCGGACATGGCC+AGG | 0.467685 | 1_4:-49329088 | None:intergenic |
| CAAAGTTATTATGGACATAG+TGG | 0.467812 | 1_4:+49327303 | Msa0167410:CDS |
| ACGCCTCTGCATCATGCCAC+TGG | 0.468078 | 1_4:-49328754 | None:intergenic |
| GAAGGCTTGCCTGATAACTT+TGG | 0.468639 | 1_4:+49327340 | Msa0167410:CDS |
| CATAAATGGAATCTCGATCC+AGG | 0.473610 | 1_4:+49327478 | Msa0167410:CDS |
| ATATGAGCAAATTAAGGAAA+AGG | 0.474026 | 1_4:-49325890 | None:intergenic |
| CTACGCTCAGGGGAGCAATT+GGG | 0.477613 | 1_4:+49326067 | Msa0167410:CDS |
| TAAAGAGAAAATGAAGAGAA+TGG | 0.477756 | 1_4:-49325563 | None:intergenic |
| ACAATGAAGTTCCTACGCTC+AGG | 0.478204 | 1_4:+49326055 | Msa0167410:exon |
| GTCTTTGAGGGAATAGATAT+AGG | 0.481239 | 1_4:+49326739 | Msa0167410:CDS |
| GAACAAGGTGCGCACGGATG+AGG | 0.482666 | 1_4:-49325478 | None:intergenic |
| AACCCTAGTCTTGCAGAAGA+AGG | 0.483388 | 1_4:+49327934 | Msa0167410:CDS |
| CAGGAAGCTAGAGCATTACT+AGG | 0.486649 | 1_4:+49326673 | Msa0167410:intron |
| CGTTCTGCCAGCAGTTTCCA+AGG | 0.488431 | 1_4:-49328115 | None:intergenic |
| TGAGGGTAAAATATCATCAT+TGG | 0.491744 | 1_4:+49329243 | Msa0167410:CDS |
| GATGGAAATTGTAAGTAAAG+TGG | 0.492204 | 1_4:-49325523 | None:intergenic |
| TAGTAACCATCCTTTAACAT+TGG | 0.492460 | 1_4:-49328253 | None:intergenic |
| TATTTGGAAGAATTACTCCC+TGG | 0.494270 | 1_4:+49327751 | Msa0167410:CDS |
| GAAACTGCTGGCAGAACGAC+CGG | 0.498236 | 1_4:+49328120 | Msa0167410:CDS |
| GCTCTTTGTAATTACGGAGC+AGG | 0.499405 | 1_4:+49327808 | Msa0167410:CDS |
| GATGCTTTAGACATTGATCC+TGG | 0.500078 | 1_4:+49329070 | Msa0167410:CDS |
| TTGTAATTACGGAGCAGGTA+AGG | 0.501729 | 1_4:+49327813 | Msa0167410:CDS |
| TCACTTCGATGGATAGTCCC+AGG | 0.503053 | 1_4:-49327769 | None:intergenic |
| AGCTGCATTACACGTCTTTG+AGG | 0.505490 | 1_4:+49326726 | Msa0167410:CDS |
| CATCTGAATCTCTTGTCACC+AGG | 0.508204 | 1_4:+49326113 | Msa0167410:CDS |
| ATATTCTATAAAACCTCAAA+GGG | 0.508646 | 1_4:+49329338 | Msa0167410:three_prime_UTR |
| AATCGTTGCAGGCTCTTGAA+AGG | 0.510742 | 1_4:+49326899 | Msa0167410:CDS |
| TTGAGCTGCTTCCAGAATTG+TGG | 0.513561 | 1_4:+49327401 | Msa0167410:CDS |
| CGCCTCTGCATCATGCCACT+GGG | 0.513605 | 1_4:-49328753 | None:intergenic |
| AACGCTGCTTTGGATCAGAC+TGG | 0.514212 | 1_4:+49328330 | Msa0167410:CDS |
| AATTACAAAGAGCTAGATCA+TGG | 0.514312 | 1_4:-49327798 | None:intergenic |
| GCTGCATTACACGTCTTTGA+GGG | 0.518869 | 1_4:+49326727 | Msa0167410:CDS |
| CTGAGATGGTATAGTACTGA+AGG | 0.523029 | 1_4:-49328153 | None:intergenic |
| CATATTCTATAAAACCTCAA+AGG | 0.523781 | 1_4:+49329337 | Msa0167410:three_prime_UTR |
| AACAAGGTGCGCACGGATGA+GGG | 0.524738 | 1_4:-49325477 | None:intergenic |
| GCTAAAATTCAAATTGCACT+TGG | 0.524807 | 1_4:+49328387 | Msa0167410:CDS |
| ATTTGGAAGAATTACTCCCT+GGG | 0.525471 | 1_4:+49327752 | Msa0167410:CDS |
| GAATTATCTCTGCGAGAAAG+TGG | 0.528266 | 1_4:+49326217 | Msa0167410:CDS |
| TGGAGATTAGGCTGCGGACA+TGG | 0.529432 | 1_4:-49329093 | None:intergenic |
| AAGAAACATTCCCATAATCA+TGG | 0.530663 | 1_4:+49326814 | Msa0167410:CDS |
| AAGCTGAGTGTACGTCTCAA+TGG | 0.530685 | 1_4:-49328424 | None:intergenic |
| CTTCAAGCCTTGGAAACTGC+TGG | 0.530954 | 1_4:+49328108 | Msa0167410:CDS |
| ACCCTAGTCTTGCAGAAGAA+GGG | 0.531321 | 1_4:+49327935 | Msa0167410:CDS |
| GAAGAGAAACAGTATGACAT+AGG | 0.531926 | 1_4:+49326005 | Msa0167410:intron |
| CCAAGTTCCTAGCACGATCT+CGG | 0.533706 | 1_4:-49328685 | None:intergenic |
| GAAAGGTGGTCTAAAATTGA+AGG | 0.534995 | 1_4:-49327685 | None:intergenic |
| GGAAATGTCTATACATTCTG+TGG | 0.537831 | 1_4:+49326843 | Msa0167410:CDS |
| AATTGTTGAGTGATAGAGAA+AGG | 0.538244 | 1_4:+49327863 | Msa0167410:CDS |
| AGGCGTAATGTATGAAGCAA+AGG | 0.544212 | 1_4:+49329015 | Msa0167410:intron |
| GTGACAAGAGATTCAGATGA+AGG | 0.544244 | 1_4:-49326109 | None:intergenic |
| AGAGCACTTGAGAGCTTGGA+CGG | 0.546004 | 1_4:+49327973 | Msa0167410:CDS |
| TCGTGCTAGGAACTTGGAAG+TGG | 0.547148 | 1_4:+49328691 | Msa0167410:CDS |
| GAATGAGAAATTAAATGAGA+TGG | 0.548668 | 1_4:-49325541 | None:intergenic |
| AGTGATCATTCTTTCCTACC+TGG | 0.549462 | 1_4:+49326151 | Msa0167410:CDS |
| GGCGTAATGTATGAAGCAAA+GGG | 0.550921 | 1_4:+49329016 | Msa0167410:intron |
| AATAATTGGCTAAACTCGAT+AGG | 0.551034 | 1_4:-49327732 | None:intergenic |
| TGGTTTGGTTTGTGAGAGTG+GGG | 0.552340 | 1_4:-49325439 | None:intergenic |
| TATAGAATATGTCATCTGAA+AGG | 0.552996 | 1_4:-49329325 | None:intergenic |
| CAATGAAGTTCCTACGCTCA+GGG | 0.553279 | 1_4:+49326056 | Msa0167410:exon |
| ACAGTATGACATAGGAGAAG+AGG | 0.554685 | 1_4:+49326013 | Msa0167410:intron |
| CTCAAAGGGTTGTGTTCTAG+AGG | 0.557066 | 1_4:+49329352 | Msa0167410:three_prime_UTR |
| TGACATCTAGAAGCAGAATA+CGG | 0.557828 | 1_4:-49328803 | None:intergenic |
| ACAGATTGAATGCTTCTGCT+TGG | 0.559962 | 1_4:+49329194 | Msa0167410:CDS |
| CAGACTGGGAAATGGGATCA+GGG | 0.561941 | 1_4:+49328345 | Msa0167410:CDS |
| GTTGAGTGATAGAGAAAGGC+CGG | 0.563279 | 1_4:+49327867 | Msa0167410:CDS |
| CCCTAGTCTTGCAGAAGAAG+GGG | 0.568534 | 1_4:+49327936 | Msa0167410:CDS |
| GTGGTTCCAATGTTAAAGGA+TGG | 0.575049 | 1_4:+49328247 | Msa0167410:CDS |
| TTCCCAGTGGCATGATGCAG+AGG | 0.575200 | 1_4:+49328751 | Msa0167410:CDS |
| CACTTCGATGGATAGTCCCA+GGG | 0.576038 | 1_4:-49327768 | None:intergenic |
| TGGAAAACTTGATCACAAGT+TGG | 0.577745 | 1_4:+49326171 | Msa0167410:CDS |
| AGGGTAACCGAGATCGTGCT+AGG | 0.578066 | 1_4:+49328678 | Msa0167410:intron |
| ACTTCCTGAAAAGAAGTCCC+TGG | 0.578708 | 1_4:-49326131 | None:intergenic |
| CAGCGTATTCTAAACTGAGA+TGG | 0.582160 | 1_4:-49328167 | None:intergenic |
| GAAGAAGAACAAGGTGCGCA+CGG | 0.590592 | 1_4:-49325484 | None:intergenic |
| AAAATAGAGGTAATTCAGCT+GGG | 0.593382 | 1_4:-49325736 | None:intergenic |
| TTTGTGAGAGTGGGGTCCAG+TGG | 0.596626 | 1_4:-49325431 | None:intergenic |
| AAGGATGGTTACTATTGGCA+CGG | 0.597518 | 1_4:+49328262 | Msa0167410:CDS |
| CAGCTCAACTGCCTTGCTCA+CGG | 0.599337 | 1_4:-49327386 | None:intergenic |
| GATTATGGGAATGTTTCTTG+CGG | 0.600308 | 1_4:-49326810 | None:intergenic |
| GTGGAATCTTCATTGCCTGA+AGG | 0.600900 | 1_4:+49327322 | Msa0167410:CDS |
| ATCTGAATCTCTTGTCACCA+GGG | 0.604963 | 1_4:+49326114 | Msa0167410:CDS |
| TTAGAAGCCATTAACAAACC+GGG | 0.606436 | 1_4:-49327898 | None:intergenic |
| ATAAATGGAATCTCGATCCA+GGG | 0.607813 | 1_4:+49327479 | Msa0167410:CDS |
| ATTGCAGGAGACCGTGAGCA+AGG | 0.607861 | 1_4:+49327375 | Msa0167410:CDS |
| ATTTATGAAGAAGTGCTCGC+CGG | 0.609816 | 1_4:-49327462 | None:intergenic |
| TGTCATCTGAAAGGTTCAAG+TGG | 0.610618 | 1_4:-49329316 | None:intergenic |
| ACGCTGCTTTGGATCAGACT+GGG | 0.611127 | 1_4:+49328331 | Msa0167410:CDS |
| TGAGATGGTATAGTACTGAA+GGG | 0.615082 | 1_4:-49328152 | None:intergenic |
| CCAATTGCTCCCCTGAGCGT+AGG | 0.615359 | 1_4:-49326066 | None:intergenic |
| CGCTCAGGGGAGCAATTGGG+AGG | 0.616293 | 1_4:+49326070 | Msa0167410:CDS |
| AGGTAAGGACTTGATGGCAA+TGG | 0.618555 | 1_4:+49327828 | Msa0167410:CDS |
| GCGTCTAAGTACTTCAGCAG+TGG | 0.622569 | 1_4:-49329113 | None:intergenic |
| AGCAAAGGGCCTTTACAAAG+AGG | 0.624063 | 1_4:+49329030 | Msa0167410:CDS |
| ACAAGGTGCGCACGGATGAG+GGG | 0.624418 | 1_4:-49325476 | None:intergenic |
| AAGTGCGTCATAAAACTGGA+AGG | 0.625420 | 1_4:+49328225 | Msa0167410:CDS |
| AAACAGACAGAGCAAATGAA+AGG | 0.626924 | 1_4:-49327702 | None:intergenic |
| GTTTAGAATACGCTGAACAA+AGG | 0.629222 | 1_4:+49328175 | Msa0167410:CDS |
| GAAATGTCTATACATTCTGT+GGG | 0.629408 | 1_4:+49326844 | Msa0167410:CDS |
| ATTTGAGAACGTAGATTAGG+GGG | 0.633365 | 1_4:-49327565 | None:intergenic |
| AATCTACGTTCTCAAATGGA+CGG | 0.634441 | 1_4:+49327571 | Msa0167410:CDS |
| GCTTCTAGATGTCATGCACT+CGG | 0.643649 | 1_4:+49328812 | Msa0167410:CDS |
| CTTGATCACAAGTTGGACAC+CGG | 0.647590 | 1_4:+49326178 | Msa0167410:CDS |
| TCCGGCAAACAACATAGAAG+AGG | 0.651451 | 1_4:+49327603 | Msa0167410:CDS |
| AGAAGAGGTGAATCTGGACA+AGG | 0.654473 | 1_4:+49326028 | Msa0167410:five_prime_UTR |
| CATTTGAGAACGTAGATTAG+GGG | 0.654581 | 1_4:-49327566 | None:intergenic |
| CAGCAGTGGAGATTAGGCTG+CGG | 0.655573 | 1_4:-49329099 | None:intergenic |
| GAAATTCAAGAGACAATCTG+AGG | 0.658610 | 1_4:+49328083 | Msa0167410:CDS |
| AGGAAAGAAGAAGAAGAACA+AGG | 0.663454 | 1_4:-49325493 | None:intergenic |
| CAGACAGAGCAAATGAAAGG+TGG | 0.667903 | 1_4:-49327699 | None:intergenic |
| GAGGTGAATCTGGACAAGGA+AGG | 0.672537 | 1_4:+49326032 | Msa0167410:five_prime_UTR |
| TGCGTCATAAAACTGGAAGG+TGG | 0.682113 | 1_4:+49328228 | Msa0167410:CDS |
| AATGAAGTTCCTACGCTCAG+GGG | 0.692085 | 1_4:+49326057 | Msa0167410:exon |
| TGTACATCAGTCTTTCCCAG+TGG | 0.736555 | 1_4:+49328738 | Msa0167410:CDS |
| TAAGACAAAGTAGCTTCACG+AGG | 0.755950 | 1_4:-49327439 | None:intergenic |
| AAGTGGCGTGTTAAACTACG+AGG | 0.762852 | 1_4:+49326234 | Msa0167410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAAATAAATA+AGG | + | chr1_4:49329495-49329514 | Msa0167410:intron | 0.0% |
| !! | TATTATAGAAAAGTAATTAA+GGG | + | chr1_4:49325640-49325659 | Msa0167410:five_prime_UTR | 10.0% |
| !!! | ATTAATAATAGTTTAGTTTA+GGG | + | chr1_4:49325848-49325867 | Msa0167410:five_prime_UTR | 10.0% |
| !!! | CAATAGTTTTTTTTTTTTTT+TGG | - | chr1_4:49326590-49326609 | None:intergenic | 10.0% |
| !! | AAATAAATAAATAAATAAGG+TGG | + | chr1_4:49329506-49329525 | Msa0167410:intron | 10.0% |
| !! | CTATTATAGAAAAGTAATTA+AGG | + | chr1_4:49325639-49325658 | Msa0167410:five_prime_UTR | 15.0% |
| !!! | GATTAATAATAGTTTAGTTT+AGG | + | chr1_4:49325847-49325866 | Msa0167410:five_prime_UTR | 15.0% |
| !!! | TTTTTCTTTTCAAATTTAAC+AGG | + | chr1_4:49328995-49329014 | Msa0167410:intron | 15.0% |
| !!! | TTTTCTATAATAGCTTCAAT+AGG | - | chr1_4:49325632-49325651 | None:intergenic | 20.0% |
| !! | TAAAACCAAGTTAATAAAAC+AGG | - | chr1_4:49325771-49325790 | None:intergenic | 20.0% |
| !! | CATAATATATGAGCAAATTA+AGG | - | chr1_4:49325899-49325918 | None:intergenic | 20.0% |
| !!! | TTAAAAAGTGAAGTATTTTG+AGG | - | chr1_4:49326267-49326286 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCATAAACTATCT+TGG | - | chr1_4:49327130-49327149 | None:intergenic | 20.0% |
| !! | GTGACTATAACTATTAAAAT+TGG | + | chr1_4:49328566-49328585 | Msa0167410:intron | 20.0% |
| !! | ATATTCTATAAAACCTCAAA+GGG | + | chr1_4:49329338-49329357 | Msa0167410:three_prime_UTR | 20.0% |
| !!! | AAATATTTTGACAAGTTCTA+TGG | - | chr1_4:49329534-49329553 | None:intergenic | 20.0% |
| ! | GAATGAGAAATTAAATGAGA+TGG | - | chr1_4:49325544-49325563 | None:intergenic | 25.0% |
| ! | TAAAGAGAAAATGAAGAGAA+TGG | - | chr1_4:49325566-49325585 | None:intergenic | 25.0% |
| !!! | TTGTTCCTGTTTTATTAACT+TGG | + | chr1_4:49325763-49325782 | Msa0167410:five_prime_UTR | 25.0% |
| ! | TTATTCATGAACTATCTTGA+TGG | + | chr1_4:49325825-49325844 | Msa0167410:five_prime_UTR | 25.0% |
| ! | ATATGAGCAAATTAAGGAAA+AGG | - | chr1_4:49325893-49325912 | None:intergenic | 25.0% |
| ! | AAATGGAAGTTTCTAATCTA+TGG | + | chr1_4:49325944-49325963 | Msa0167410:intron | 25.0% |
| !!! | CACTTTTTAAAGTTATCATG+TGG | + | chr1_4:49326277-49326296 | Msa0167410:intron | 25.0% |
| !! | AAAGTTATCATGTGGATTTT+TGG | + | chr1_4:49326285-49326304 | Msa0167410:intron | 25.0% |
| ! | AATAAGCTGTTTATCCAAAT+AGG | - | chr1_4:49326358-49326377 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGGGTACATAGA+CGG | - | chr1_4:49326578-49326597 | None:intergenic | 25.0% |
| ! | TTGTAGCTACTATTCTAATT+TGG | + | chr1_4:49326627-49326646 | Msa0167410:intron | 25.0% |
| ! | AAACTATCTTGGATATCTAA+TGG | - | chr1_4:49327119-49327138 | None:intergenic | 25.0% |
| !! | ATTGGTTTCAATAACCATAT+AGG | + | chr1_4:49327220-49327239 | Msa0167410:intron | 25.0% |
| ! | CATAATAACTTTGCAAGATT+GGG | - | chr1_4:49327296-49327315 | None:intergenic | 25.0% |
| !!! | GTTGTTTTTCTTCTATATAG+TGG | + | chr1_4:49327529-49327548 | Msa0167410:CDS | 25.0% |
| !!! | TTTTTCTTCTATATAGTGGA+GGG | + | chr1_4:49327533-49327552 | Msa0167410:CDS | 25.0% |
| ! | GAGTAATTCTTCCAAATAAT+TGG | - | chr1_4:49327749-49327768 | None:intergenic | 25.0% |
| ! | AATGTTGCAAAATTCTATCT+TGG | + | chr1_4:49328015-49328034 | Msa0167410:CDS | 25.0% |
| ! | AAATATTCAATCAGTACAAG+TGG | - | chr1_4:49328521-49328540 | None:intergenic | 25.0% |
| ! | AAATTGGATAAATGTTTCAC+TGG | + | chr1_4:49328582-49328601 | Msa0167410:intron | 25.0% |
| ! | TCACAAATGGTATAGATAAA+AGG | - | chr1_4:49328657-49328676 | None:intergenic | 25.0% |
| ! | TTATCTATACCATTTGTGAT+AGG | + | chr1_4:49328658-49328677 | Msa0167410:intron | 25.0% |
| ! | TATCTATACCATTTGTGATA+GGG | + | chr1_4:49328659-49328678 | Msa0167410:intron | 25.0% |
| ! | CATCTCAAGAAAAAGTTAAA+TGG | - | chr1_4:49328910-49328929 | None:intergenic | 25.0% |
| !!! | CATTTAACTTTTTCTTGAGA+TGG | + | chr1_4:49328908-49328927 | Msa0167410:intron | 25.0% |
| ! | TTCAAGTGATAATAATCTGT+TGG | - | chr1_4:49328942-49328961 | None:intergenic | 25.0% |
| ! | TATAGAATATGTCATCTGAA+AGG | - | chr1_4:49329328-49329347 | None:intergenic | 25.0% |
| ! | CATATTCTATAAAACCTCAA+AGG | + | chr1_4:49329337-49329356 | Msa0167410:three_prime_UTR | 25.0% |
| GATGGAAATTGTAAGTAAAG+TGG | - | chr1_4:49325526-49325545 | None:intergenic | 30.0% | |
| GAAAAGTAATTAAGGGAGAA+AGG | + | chr1_4:49325647-49325666 | Msa0167410:five_prime_UTR | 30.0% | |
| !! | TTCAGAGTGTTTTTGTTGAA+GGG | + | chr1_4:49325675-49325694 | Msa0167410:five_prime_UTR | 30.0% |
| !!! | AAGGGTACGTTTTTTTATAC+TGG | + | chr1_4:49325693-49325712 | Msa0167410:five_prime_UTR | 30.0% |
| AAAATAGAGGTAATTCAGCT+GGG | - | chr1_4:49325739-49325758 | None:intergenic | 30.0% | |
| AAAAATAGAGGTAATTCAGC+TGG | - | chr1_4:49325740-49325759 | None:intergenic | 30.0% | |
| !!! | GCTGAATTACCTCTATTTTT+TGG | + | chr1_4:49325740-49325759 | Msa0167410:five_prime_UTR | 30.0% |
| ! | GTTTAGTTTAGGGACTAAAT+TGG | + | chr1_4:49325858-49325877 | Msa0167410:five_prime_UTR | 30.0% |
| TCACATCAAAATTCAAACAC+AGG | - | chr1_4:49325972-49325991 | None:intergenic | 30.0% | |
| TTCTGCTTCTTCTATATTAC+CGG | - | chr1_4:49326200-49326219 | None:intergenic | 30.0% | |
| !! | TGGATTTTTGGATATGCATT+TGG | + | chr1_4:49326297-49326316 | Msa0167410:intron | 30.0% |
| ATTCAGCACTTGTAGAATTA+AGG | + | chr1_4:49326332-49326351 | Msa0167410:intron | 30.0% | |
| TTGTAGAATTAAGGCCTATT+TGG | + | chr1_4:49326341-49326360 | Msa0167410:intron | 30.0% | |
| AAAATATGCATGCAATCTAC+AGG | + | chr1_4:49326654-49326673 | Msa0167410:intron | 30.0% | |
| AAGAAACATTCCCATAATCA+TGG | + | chr1_4:49326814-49326833 | Msa0167410:CDS | 30.0% | |
| ACAGAATGTATAGACATTTC+CGG | - | chr1_4:49326844-49326863 | None:intergenic | 30.0% | |
| GAAATGTCTATACATTCTGT+GGG | + | chr1_4:49326844-49326863 | Msa0167410:CDS | 30.0% | |
| TAAGAATCAAAAAACCAGCA+AGG | - | chr1_4:49326936-49326955 | None:intergenic | 30.0% | |
| !!! | CTCTCTTTTTTTGTATGTCA+AGG | + | chr1_4:49326962-49326981 | Msa0167410:intron | 30.0% |
| TTTGTATGTCAAGGAATTTG+TGG | + | chr1_4:49326971-49326990 | Msa0167410:intron | 30.0% | |
| TAGCATATACGAAAACAGAT+TGG | + | chr1_4:49327202-49327221 | Msa0167410:intron | 30.0% | |
| ACTTTGACTAATGTCCTATA+TGG | - | chr1_4:49327237-49327256 | None:intergenic | 30.0% | |
| CCATAATAACTTTGCAAGAT+TGG | - | chr1_4:49327297-49327316 | None:intergenic | 30.0% | |
| CCAATCTTGCAAAGTTATTA+TGG | + | chr1_4:49327294-49327313 | Msa0167410:CDS | 30.0% | |
| CAAAGTTATTATGGACATAG+TGG | + | chr1_4:49327303-49327322 | Msa0167410:CDS | 30.0% | |
| ! | GTTTTTCTTCTATATAGTGG+AGG | + | chr1_4:49327532-49327551 | Msa0167410:CDS | 30.0% |
| !! | TTTTCTTCTATATAGTGGAG+GGG | + | chr1_4:49327534-49327553 | Msa0167410:CDS | 30.0% |
| TCTCTCTCAATAGAATTGAA+TGG | + | chr1_4:49327659-49327678 | Msa0167410:CDS | 30.0% | |
| CTCTCTCAATAGAATTGAAT+GGG | + | chr1_4:49327660-49327679 | Msa0167410:CDS | 30.0% | |
| AATAATTGGCTAAACTCGAT+AGG | - | chr1_4:49327735-49327754 | None:intergenic | 30.0% | |
| ATCGAGTTTAGCCAATTATT+TGG | + | chr1_4:49327735-49327754 | Msa0167410:CDS | 30.0% | |
| AATTACAAAGAGCTAGATCA+TGG | - | chr1_4:49327801-49327820 | None:intergenic | 30.0% | |
| !! | GATCTAGCTCTTTGTAATTA+CGG | + | chr1_4:49327802-49327821 | Msa0167410:CDS | 30.0% |
| AATTGTTGAGTGATAGAGAA+AGG | + | chr1_4:49327863-49327882 | Msa0167410:CDS | 30.0% | |
| TTTAGAAGCCATTAACAAAC+CGG | - | chr1_4:49327902-49327921 | None:intergenic | 30.0% | |
| GAATTTCTCGAAATCAGAAA+TGG | - | chr1_4:49328070-49328089 | None:intergenic | 30.0% | |
| TAGTAACCATCCTTTAACAT+TGG | - | chr1_4:49328256-49328275 | None:intergenic | 30.0% | |
| TGTTAAAGGATGGTTACTAT+TGG | + | chr1_4:49328257-49328276 | Msa0167410:CDS | 30.0% | |
| ! | ATCTGCTCAAAAACAGTTTT+TGG | + | chr1_4:49328290-49328309 | Msa0167410:CDS | 30.0% |
| GCTAAAATTCAAATTGCACT+TGG | + | chr1_4:49328387-49328406 | Msa0167410:CDS | 30.0% | |
| ! | CAAATTCAGAGCAAAAGTTT+TGG | + | chr1_4:49328459-49328478 | Msa0167410:CDS | 30.0% |
| TTCTTGGAAGAAGCTATATA+AGG | + | chr1_4:49328482-49328501 | Msa0167410:CDS | 30.0% | |
| ! | GATTGAATATTTCTGCAGAA+TGG | + | chr1_4:49328529-49328548 | Msa0167410:intron | 30.0% |
| TGAGGGTAAAATATCATCAT+TGG | + | chr1_4:49329243-49329262 | Msa0167410:CDS | 30.0% | |
| GGTAGAAGCAAAACAAAAAA+TGG | + | chr1_4:49329373-49329392 | Msa0167410:three_prime_UTR | 30.0% | |
| AGGAAAGAAGAAGAAGAACA+AGG | - | chr1_4:49325496-49325515 | None:intergenic | 35.0% | |
| GTAAGTAAAGTGGAAGATCT+AGG | - | chr1_4:49325516-49325535 | None:intergenic | 35.0% | |
| !! | CTTCAGAGTGTTTTTGTTGA+AGG | + | chr1_4:49325674-49325693 | Msa0167410:five_prime_UTR | 35.0% |
| CAGGAACAACCAAAAAATAG+AGG | - | chr1_4:49325752-49325771 | None:intergenic | 35.0% | |
| !! | TAGTGCTGAAAGTTCTGAAA+TGG | + | chr1_4:49325927-49325946 | Msa0167410:intron | 35.0% |
| GAAGAGAAACAGTATGACAT+AGG | + | chr1_4:49326005-49326024 | Msa0167410:intron | 35.0% | |
| ! | AACTTGTGATCAAGTTTTCC+AGG | - | chr1_4:49326172-49326191 | None:intergenic | 35.0% |
| TGGAAAACTTGATCACAAGT+TGG | + | chr1_4:49326171-49326190 | Msa0167410:CDS | 35.0% | |
| !! | TTTGTGTGTGAGTTTTCAAG+TGG | + | chr1_4:49326541-49326560 | Msa0167410:intron | 35.0% |
| GGAAGATACGAGTATCAAAA+AGG | + | chr1_4:49326694-49326713 | Msa0167410:CDS | 35.0% | |
| ! | GTCTTTGAGGGAATAGATAT+AGG | + | chr1_4:49326739-49326758 | Msa0167410:CDS | 35.0% |
| !! | GAAAGGGCAATTTTGATCTT+AGG | - | chr1_4:49326775-49326794 | None:intergenic | 35.0% |
| GATTATGGGAATGTTTCTTG+CGG | - | chr1_4:49326813-49326832 | None:intergenic | 35.0% | |
| GGAAATGTCTATACATTCTG+TGG | + | chr1_4:49326843-49326862 | Msa0167410:CDS | 35.0% | |
| TCTAAAAGCAAAATCGTTGC+AGG | + | chr1_4:49326888-49326907 | Msa0167410:CDS | 35.0% | |
| TGCAAAACAAGGTAGATTAC+GGG | - | chr1_4:49327025-49327044 | None:intergenic | 35.0% | |
| GTGCAAAACAAGGTAGATTA+CGG | - | chr1_4:49327026-49327045 | None:intergenic | 35.0% | |
| !!! | TAATCTACCTTGTTTTGCAC+TGG | + | chr1_4:49327026-49327045 | Msa0167410:intron | 35.0% |
| ATAAATGGAATCTCGATCCA+GGG | + | chr1_4:49327479-49327498 | Msa0167410:CDS | 35.0% | |
| ATTTGAGAACGTAGATTAGG+GGG | - | chr1_4:49327568-49327587 | None:intergenic | 35.0% | |
| CATTTGAGAACGTAGATTAG+GGG | - | chr1_4:49327569-49327588 | None:intergenic | 35.0% | |
| CCATTTGAGAACGTAGATTA+GGG | - | chr1_4:49327570-49327589 | None:intergenic | 35.0% | |
| TCCATTTGAGAACGTAGATT+AGG | - | chr1_4:49327571-49327590 | None:intergenic | 35.0% | |
| AATCTACGTTCTCAAATGGA+CGG | + | chr1_4:49327571-49327590 | Msa0167410:CDS | 35.0% | |
| ! | GAAAGGTGGTCTAAAATTGA+AGG | - | chr1_4:49327688-49327707 | None:intergenic | 35.0% |
| AAACAGACAGAGCAAATGAA+AGG | - | chr1_4:49327705-49327724 | None:intergenic | 35.0% | |
| TTCATTTGCTCTGTCTGTTT+CGG | + | chr1_4:49327705-49327724 | Msa0167410:CDS | 35.0% | |
| TATTTGGAAGAATTACTCCC+TGG | + | chr1_4:49327751-49327770 | Msa0167410:CDS | 35.0% | |
| ATTTGGAAGAATTACTCCCT+GGG | + | chr1_4:49327752-49327771 | Msa0167410:CDS | 35.0% | |
| TTAGAAGCCATTAACAAACC+GGG | - | chr1_4:49327901-49327920 | None:intergenic | 35.0% | |
| ATCATCTGCACACTCAAAAT+TGG | + | chr1_4:49328044-49328063 | Msa0167410:CDS | 35.0% | |
| GAAATTCAAGAGACAATCTG+AGG | + | chr1_4:49328083-49328102 | Msa0167410:CDS | 35.0% | |
| ! | TGAGATGGTATAGTACTGAA+GGG | - | chr1_4:49328155-49328174 | None:intergenic | 35.0% |
| ! | GTTTAGAATACGCTGAACAA+AGG | + | chr1_4:49328175-49328194 | Msa0167410:CDS | 35.0% |
| !! | TGCTCAAAAACAGTTTTTGG+AGG | + | chr1_4:49328293-49328312 | Msa0167410:CDS | 35.0% |
| ATCTATTATCAACGCTGCTT+TGG | + | chr1_4:49328320-49328339 | Msa0167410:CDS | 35.0% | |
| !!! | AGAGCAAAAGTTTTGGTTCT+TGG | + | chr1_4:49328466-49328485 | Msa0167410:CDS | 35.0% |
| TGACATCTAGAAGCAGAATA+CGG | - | chr1_4:49328806-49328825 | None:intergenic | 35.0% | |
| !!! | CTTTTAGAGCCTCTTTGTAA+AGG | - | chr1_4:49329042-49329061 | None:intergenic | 35.0% |
| !!! | TGCAGTCAGAACTTTTTTGA+CGG | + | chr1_4:49329156-49329175 | Msa0167410:CDS | 35.0% |
| !! | TAATCTTGGCCTTTTTCACA+AGG | + | chr1_4:49329219-49329238 | Msa0167410:CDS | 35.0% |
| !! | TTGGTTTGGTTTGTGAGAGT+GGG | - | chr1_4:49325443-49325462 | None:intergenic | 40.0% |
| !! | TTTGGTTTGGTTTGTGAGAG+TGG | - | chr1_4:49325444-49325463 | None:intergenic | 40.0% |
| !! | GTTTGGAGTTTGGTTTGGTT+TGG | - | chr1_4:49325457-49325476 | None:intergenic | 40.0% |
| ! | GCATCTCAATTTTCTGCTGT+CGG | + | chr1_4:49325797-49325816 | Msa0167410:five_prime_UTR | 40.0% |
| ACAGTATGACATAGGAGAAG+AGG | + | chr1_4:49326013-49326032 | Msa0167410:intron | 40.0% | |
| GTGACAAGAGATTCAGATGA+AGG | - | chr1_4:49326112-49326131 | None:intergenic | 40.0% | |
| ATCTGAATCTCTTGTCACCA+GGG | + | chr1_4:49326114-49326133 | Msa0167410:CDS | 40.0% | |
| AGTGATCATTCTTTCCTACC+TGG | + | chr1_4:49326151-49326170 | Msa0167410:CDS | 40.0% | |
| ! | TGTGATCAAGTTTTCCAGGT+AGG | - | chr1_4:49326168-49326187 | None:intergenic | 40.0% |
| GAATTATCTCTGCGAGAAAG+TGG | + | chr1_4:49326217-49326236 | Msa0167410:CDS | 40.0% | |
| !! | TTTTGGGTACATAGACGGAA+TGG | - | chr1_4:49326573-49326592 | None:intergenic | 40.0% |
| !! | GCGTTCTTTGTTTCTGGAAA+GGG | - | chr1_4:49326791-49326810 | None:intergenic | 40.0% |
| TTCCCATAATCATGGTGAAC+CGG | + | chr1_4:49326822-49326841 | Msa0167410:CDS | 40.0% | |
| TTCCGGTTCACCATGATTAT+GGG | - | chr1_4:49326827-49326846 | None:intergenic | 40.0% | |
| TTTCCGGTTCACCATGATTA+TGG | - | chr1_4:49326828-49326847 | None:intergenic | 40.0% | |
| CAGGCTCTTGAAAGGTTTAA+AGG | + | chr1_4:49326907-49326926 | Msa0167410:CDS | 40.0% | |
| AGGTTTAAAGGTAACCTTGC+TGG | + | chr1_4:49326919-49326938 | Msa0167410:intron | 40.0% | |
| ! | TTGTGGTTTTTCGCTGCATA+TGG | + | chr1_4:49326988-49327007 | Msa0167410:intron | 40.0% |
| CATTCAGCACCAAAGTTATC+AGG | - | chr1_4:49327352-49327371 | None:intergenic | 40.0% | |
| ! | TGGTGCTGAATGTAAATTGC+AGG | + | chr1_4:49327360-49327379 | Msa0167410:CDS | 40.0% |
| TAAGACAAAGTAGCTTCACG+AGG | - | chr1_4:49327442-49327461 | None:intergenic | 40.0% | |
| ! | GTGAAGCTACTTTGTCTTAC+CGG | + | chr1_4:49327443-49327462 | Msa0167410:CDS | 40.0% |
| !! | ATTTATGAAGAAGTGCTCGC+CGG | - | chr1_4:49327465-49327484 | None:intergenic | 40.0% |
| CATAAATGGAATCTCGATCC+AGG | + | chr1_4:49327478-49327497 | Msa0167410:CDS | 40.0% | |
| CCCTAATCTACGTTCTCAAA+TGG | + | chr1_4:49327567-49327586 | Msa0167410:CDS | 40.0% | |
| TCATTTGCTCTGTCTGTTTC+GGG | + | chr1_4:49327706-49327725 | Msa0167410:CDS | 40.0% | |
| CATGGAATCTTTCACTTCGA+TGG | - | chr1_4:49327783-49327802 | None:intergenic | 40.0% | |
| TTGTAATTACGGAGCAGGTA+AGG | + | chr1_4:49327813-49327832 | Msa0167410:CDS | 40.0% | |
| ! | CTGAGATGGTATAGTACTGA+AGG | - | chr1_4:49328156-49328175 | None:intergenic | 40.0% |
| CAGCGTATTCTAAACTGAGA+TGG | - | chr1_4:49328170-49328189 | None:intergenic | 40.0% | |
| TGCAAAGTGCGTCATAAAAC+TGG | + | chr1_4:49328221-49328240 | Msa0167410:CDS | 40.0% | |
| AAGTGCGTCATAAAACTGGA+AGG | + | chr1_4:49328225-49328244 | Msa0167410:CDS | 40.0% | |
| GAAGGTGGTTCCAATGTTAA+AGG | + | chr1_4:49328243-49328262 | Msa0167410:CDS | 40.0% | |
| GTGGTTCCAATGTTAAAGGA+TGG | + | chr1_4:49328247-49328266 | Msa0167410:CDS | 40.0% | |
| AAGGATGGTTACTATTGGCA+CGG | + | chr1_4:49328262-49328281 | Msa0167410:CDS | 40.0% | |
| TTTGGATCAGACTGGGAAAT+GGG | + | chr1_4:49328338-49328357 | Msa0167410:CDS | 40.0% | |
| AGGTAAACAGCTAGAACAGA+AGG | - | chr1_4:49328637-49328656 | None:intergenic | 40.0% | |
| GGAACTTGGAAGTGGAAATA+TGG | + | chr1_4:49328699-49328718 | Msa0167410:CDS | 40.0% | |
| GGCGTGTCTTTCAAAATCTA+AGG | + | chr1_4:49328772-49328791 | Msa0167410:CDS | 40.0% | |
| AGGCGTAATGTATGAAGCAA+AGG | + | chr1_4:49329015-49329034 | Msa0167410:intron | 40.0% | |
| GGCGTAATGTATGAAGCAAA+GGG | + | chr1_4:49329016-49329035 | Msa0167410:intron | 40.0% | |
| ! | GATGCTTTAGACATTGATCC+TGG | + | chr1_4:49329070-49329089 | Msa0167410:CDS | 40.0% |
| ! | GTCAAAAAAGTTCTGACTGC+AGG | - | chr1_4:49329157-49329176 | None:intergenic | 40.0% |
| !!! | CTTTTTTGACGGATGCTCTA+CGG | + | chr1_4:49329167-49329186 | Msa0167410:CDS | 40.0% |
| ACAGATTGAATGCTTCTGCT+TGG | + | chr1_4:49329194-49329213 | Msa0167410:CDS | 40.0% | |
| GCTTCTGCTTGGTATAATCT+TGG | + | chr1_4:49329205-49329224 | Msa0167410:CDS | 40.0% | |
| ! | CGAAGCTACAGAATGTTTTC+AGG | + | chr1_4:49329267-49329286 | Msa0167410:CDS | 40.0% |
| TGTCATCTGAAAGGTTCAAG+TGG | - | chr1_4:49329319-49329338 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTTTGTGAGAGTG+GGG | - | chr1_4:49325442-49325461 | None:intergenic | 45.0% |
| CATAGGAGAAGAGGTGAATC+TGG | + | chr1_4:49326022-49326041 | Msa0167410:five_prime_UTR | 45.0% | |
| AGAAGAGGTGAATCTGGACA+AGG | + | chr1_4:49326028-49326047 | Msa0167410:five_prime_UTR | 45.0% | |
| ACAATGAAGTTCCTACGCTC+AGG | + | chr1_4:49326055-49326074 | Msa0167410:exon | 45.0% | |
| CAATGAAGTTCCTACGCTCA+GGG | + | chr1_4:49326056-49326075 | Msa0167410:exon | 45.0% | |
| AATGAAGTTCCTACGCTCAG+GGG | + | chr1_4:49326057-49326076 | Msa0167410:exon | 45.0% | |
| CATCTGAATCTCTTGTCACC+AGG | + | chr1_4:49326113-49326132 | Msa0167410:CDS | 45.0% | |
| ACTTCCTGAAAAGAAGTCCC+TGG | - | chr1_4:49326134-49326153 | None:intergenic | 45.0% | |
| ! | CTTGATCACAAGTTGGACAC+CGG | + | chr1_4:49326178-49326197 | Msa0167410:CDS | 45.0% |
| AAGTGGCGTGTTAAACTACG+AGG | + | chr1_4:49326234-49326253 | Msa0167410:CDS | 45.0% | |
| ! | CAGGAAGCTAGAGCATTACT+AGG | + | chr1_4:49326673-49326692 | Msa0167410:intron | 45.0% |
| AGCTGCATTACACGTCTTTG+AGG | + | chr1_4:49326726-49326745 | Msa0167410:CDS | 45.0% | |
| GCTGCATTACACGTCTTTGA+GGG | + | chr1_4:49326727-49326746 | Msa0167410:CDS | 45.0% | |
| !! | GGCGTTCTTTGTTTCTGGAA+AGG | - | chr1_4:49326792-49326811 | None:intergenic | 45.0% |
| AATCGTTGCAGGCTCTTGAA+AGG | + | chr1_4:49326899-49326918 | Msa0167410:CDS | 45.0% | |
| AGTCTCACCAGTGCAAAACA+AGG | - | chr1_4:49327036-49327055 | None:intergenic | 45.0% | |
| ! | TTTGCACTGGTGAGACTGTT+TGG | + | chr1_4:49327039-49327058 | Msa0167410:intron | 45.0% |
| GTGGAATCTTCATTGCCTGA+AGG | + | chr1_4:49327322-49327341 | Msa0167410:CDS | 45.0% | |
| AAGTTATCAGGCAAGCCTTC+AGG | - | chr1_4:49327340-49327359 | None:intergenic | 45.0% | |
| GAAGGCTTGCCTGATAACTT+TGG | + | chr1_4:49327340-49327359 | Msa0167410:CDS | 45.0% | |
| TTGAGCTGCTTCCAGAATTG+TGG | + | chr1_4:49327401-49327420 | Msa0167410:CDS | 45.0% | |
| TCAGCAAGCTTCCACAATTC+TGG | - | chr1_4:49327415-49327434 | None:intergenic | 45.0% | |
| GGCGAGCACTTCTTCATAAA+TGG | + | chr1_4:49327464-49327483 | Msa0167410:CDS | 45.0% | |
| TGAATCTTTGCTACAGTCCC+TGG | - | chr1_4:49327499-49327518 | None:intergenic | 45.0% | |
| TCCGGCAAACAACATAGAAG+AGG | + | chr1_4:49327603-49327622 | Msa0167410:CDS | 45.0% | |
| ! | GCCTCTTCTATGTTGTTTGC+CGG | - | chr1_4:49327607-49327626 | None:intergenic | 45.0% |
| CAGACAGAGCAAATGAAAGG+TGG | - | chr1_4:49327702-49327721 | None:intergenic | 45.0% | |
| GCTCTTTGTAATTACGGAGC+AGG | + | chr1_4:49327808-49327827 | Msa0167410:CDS | 45.0% | |
| ! | AGGTAAGGACTTGATGGCAA+TGG | + | chr1_4:49327828-49327847 | Msa0167410:CDS | 45.0% |
| GTTGAGTGATAGAGAAAGGC+CGG | + | chr1_4:49327867-49327886 | Msa0167410:CDS | 45.0% | |
| !! | ACACGTTCCCGGTTTGTTAA+TGG | + | chr1_4:49327891-49327910 | Msa0167410:CDS | 45.0% |
| !! | AACCCTAGTCTTGCAGAAGA+AGG | + | chr1_4:49327934-49327953 | Msa0167410:CDS | 45.0% |
| !! | ACCCTAGTCTTGCAGAAGAA+GGG | + | chr1_4:49327935-49327954 | Msa0167410:CDS | 45.0% |
| TACTGAAGGGTCTCTCATTC+CGG | - | chr1_4:49328142-49328161 | None:intergenic | 45.0% | |
| TGCGTCATAAAACTGGAAGG+TGG | + | chr1_4:49328228-49328247 | Msa0167410:CDS | 45.0% | |
| CTTTGGATCAGACTGGGAAA+TGG | + | chr1_4:49328337-49328356 | Msa0167410:CDS | 45.0% | |
| AAGCTGAGTGTACGTCTCAA+TGG | - | chr1_4:49328427-49328446 | None:intergenic | 45.0% | |
| CTCGGTTACCCTATCACAAA+TGG | - | chr1_4:49328670-49328689 | None:intergenic | 45.0% | |
| TGTACATCAGTCTTTCCCAG+TGG | + | chr1_4:49328738-49328757 | Msa0167410:CDS | 45.0% | |
| GCTTCTAGATGTCATGCACT+CGG | + | chr1_4:49328812-49328831 | Msa0167410:CDS | 45.0% | |
| AGCAAAGGGCCTTTACAAAG+AGG | + | chr1_4:49329030-49329049 | Msa0167410:CDS | 45.0% | |
| GTACTTCAGCAGTGGAGATT+AGG | - | chr1_4:49329108-49329127 | None:intergenic | 45.0% | |
| ! | TACCCTCAGCCTTGTGAAAA+AGG | - | chr1_4:49329231-49329250 | None:intergenic | 45.0% |
| !! | CTCTAGAACACAACCCTTTG+AGG | - | chr1_4:49329354-49329373 | None:intergenic | 45.0% |
| CTCAAAGGGTTGTGTTCTAG+AGG | + | chr1_4:49329352-49329371 | Msa0167410:three_prime_UTR | 45.0% | |
| !!! | AATAGTTTTTTTTTTTTTTT+GGG | - | chr1_4:49326589-49326608 | None:intergenic | 5.0% |
| ! | GAGGGGTTTGGAGTTTGGTT+TGG | - | chr1_4:49325462-49325481 | None:intergenic | 50.0% |
| GAAGAAGAACAAGGTGCGCA+CGG | - | chr1_4:49325487-49325506 | None:intergenic | 50.0% | |
| GAGGTGAATCTGGACAAGGA+AGG | + | chr1_4:49326032-49326051 | Msa0167410:five_prime_UTR | 50.0% | |
| ! | GTCACCAGGGACTTCTTTTC+AGG | + | chr1_4:49326127-49326146 | Msa0167410:CDS | 50.0% |
| ! | CTTGCGGCGTTCTTTGTTTC+TGG | - | chr1_4:49326797-49326816 | None:intergenic | 50.0% |
| AATGGACGGCTCGTTTGTTC+CGG | + | chr1_4:49327585-49327604 | Msa0167410:CDS | 50.0% | |
| CACTTCGATGGATAGTCCCA+GGG | - | chr1_4:49327771-49327790 | None:intergenic | 50.0% | |
| TCACTTCGATGGATAGTCCC+AGG | - | chr1_4:49327772-49327791 | None:intergenic | 50.0% | |
| AACAAACCGGGAACGTGTTC+CGG | - | chr1_4:49327889-49327908 | None:intergenic | 50.0% | |
| CCCCTTCTTCTGCAAGACTA+GGG | - | chr1_4:49327939-49327958 | None:intergenic | 50.0% | |
| !! | CCCTAGTCTTGCAGAAGAAG+GGG | + | chr1_4:49327936-49327955 | Msa0167410:CDS | 50.0% |
| ACCCCTTCTTCTGCAAGACT+AGG | - | chr1_4:49327940-49327959 | None:intergenic | 50.0% | |
| !! | TCAGAGAGCACTTGAGAGCT+TGG | + | chr1_4:49327969-49327988 | Msa0167410:CDS | 50.0% |
| ! | AGAGCACTTGAGAGCTTGGA+CGG | + | chr1_4:49327973-49327992 | Msa0167410:CDS | 50.0% |
| ! | ATCTGAGGCACTTCAAGCCT+TGG | + | chr1_4:49328098-49328117 | Msa0167410:CDS | 50.0% |
| CTTCAAGCCTTGGAAACTGC+TGG | + | chr1_4:49328108-49328127 | Msa0167410:CDS | 50.0% | |
| ! | AACGCTGCTTTGGATCAGAC+TGG | + | chr1_4:49328330-49328349 | Msa0167410:CDS | 50.0% |
| ! | ACGCTGCTTTGGATCAGACT+GGG | + | chr1_4:49328331-49328350 | Msa0167410:CDS | 50.0% |
| TCAGACTGGGAAATGGGATC+AGG | + | chr1_4:49328344-49328363 | Msa0167410:CDS | 50.0% | |
| CAGACTGGGAAATGGGATCA+GGG | + | chr1_4:49328345-49328364 | Msa0167410:CDS | 50.0% | |
| CCAAGTTCCTAGCACGATCT+CGG | - | chr1_4:49328688-49328707 | None:intergenic | 50.0% | |
| TCGTGCTAGGAACTTGGAAG+TGG | + | chr1_4:49328691-49328710 | Msa0167410:CDS | 50.0% | |
| GCGTCTAAGTACTTCAGCAG+TGG | - | chr1_4:49329116-49329135 | None:intergenic | 50.0% | |
| !! | TGGCCTTTTTCACAAGGCTG+AGG | + | chr1_4:49329225-49329244 | Msa0167410:CDS | 50.0% |
| !! | GGCCTTTTTCACAAGGCTGA+GGG | + | chr1_4:49329226-49329245 | Msa0167410:CDS | 50.0% |
| ! | CGGATGAGGGGTTTGGAGTT+TGG | - | chr1_4:49325467-49325486 | None:intergenic | 55.0% |
| AACAAGGTGCGCACGGATGA+GGG | - | chr1_4:49325480-49325499 | None:intergenic | 55.0% | |
| CTACGCTCAGGGGAGCAATT+GGG | + | chr1_4:49326067-49326086 | Msa0167410:CDS | 55.0% | |
| ATTGCAGGAGACCGTGAGCA+AGG | + | chr1_4:49327375-49327394 | Msa0167410:CDS | 55.0% | |
| CAGCTCAACTGCCTTGCTCA+CGG | - | chr1_4:49327389-49327408 | None:intergenic | 55.0% | |
| CGGAGCAGGTAAGGACTTGA+TGG | + | chr1_4:49327822-49327841 | Msa0167410:CDS | 55.0% | |
| CGTTCTGCCAGCAGTTTCCA+AGG | - | chr1_4:49328118-49328137 | None:intergenic | 55.0% | |
| GAAACTGCTGGCAGAACGAC+CGG | + | chr1_4:49328120-49328139 | Msa0167410:CDS | 55.0% | |
| AGGGTAACCGAGATCGTGCT+AGG | + | chr1_4:49328678-49328697 | Msa0167410:intron | 55.0% | |
| CCGAGATCGTGCTAGGAACT+TGG | + | chr1_4:49328685-49328704 | Msa0167410:CDS | 55.0% | |
| TTCCCAGTGGCATGATGCAG+AGG | + | chr1_4:49328751-49328770 | Msa0167410:CDS | 55.0% | |
| TGGAGATTAGGCTGCGGACA+TGG | - | chr1_4:49329096-49329115 | None:intergenic | 55.0% | |
| CAGCAGTGGAGATTAGGCTG+CGG | - | chr1_4:49329102-49329121 | None:intergenic | 55.0% | |
| ACAAGGTGCGCACGGATGAG+GGG | - | chr1_4:49325479-49325498 | None:intergenic | 60.0% | |
| GAACAAGGTGCGCACGGATG+AGG | - | chr1_4:49325481-49325500 | None:intergenic | 60.0% | |
| CCAATTGCTCCCCTGAGCGT+AGG | - | chr1_4:49326069-49326088 | None:intergenic | 60.0% | |
| CCTACGCTCAGGGGAGCAAT+TGG | + | chr1_4:49326066-49326085 | Msa0167410:CDS | 60.0% | |
| GAAAGGCCGGAACACGTTCC+CGG | + | chr1_4:49327880-49327899 | Msa0167410:CDS | 60.0% | |
| CGCCTCTGCATCATGCCACT+GGG | - | chr1_4:49328756-49328775 | None:intergenic | 60.0% | |
| ACGCCTCTGCATCATGCCAC+TGG | - | chr1_4:49328757-49328776 | None:intergenic | 60.0% | |
| ATTAGGCTGCGGACATGGCC+AGG | - | chr1_4:49329091-49329110 | None:intergenic | 60.0% | |
| GTGCGCACGGATGAGGGGTT+TGG | - | chr1_4:49325474-49325493 | None:intergenic | 65.0% | |
| CGCTCAGGGGAGCAATTGGG+AGG | + | chr1_4:49326070-49326089 | Msa0167410:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49325434 | 49329595 | 49325434 | ID=Msa0167410;Name=Msa0167410 |
| chr1_4 | mRNA | 49325434 | 49329595 | 49325434 | ID=Msa0167410-mRNA-1;Parent=Msa0167410;Name=Msa0167410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=546|1|1|1|0.66|0.42|7|239|713 |
| chr1_4 | exon | 49325434 | 49325938 | 49325434 | ID=Msa0167410-mRNA-1:exon:14468;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49326017 | 49326255 | 49326017 | ID=Msa0167410-mRNA-1:exon:14469;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49326676 | 49326928 | 49326676 | ID=Msa0167410-mRNA-1:exon:14470;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49327287 | 49328503 | 49327287 | ID=Msa0167410-mRNA-1:exon:14471;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49328680 | 49328833 | 49328680 | ID=Msa0167410-mRNA-1:exon:14472;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49329017 | 49329503 | 49329017 | ID=Msa0167410-mRNA-1:exon:14473;Parent=Msa0167410-mRNA-1 |
| chr1_4 | exon | 49329524 | 49329595 | 49329524 | ID=Msa0167410-mRNA-1:exon:14474;Parent=Msa0167410-mRNA-1 |
| chr1_4 | five_prime_UTR | 49325434 | 49325938 | 49325434 | ID=Msa0167410-mRNA-1:five_prime_utr;Parent=Msa0167410-mRNA-1 |
| chr1_4 | five_prime_UTR | 49326017 | 49326057 | 49326017 | ID=Msa0167410-mRNA-1:five_prime_utr;Parent=Msa0167410-mRNA-1 |
| chr1_4 | CDS | 49326058 | 49326255 | 49326058 | ID=Msa0167410-mRNA-1:cds;Parent=Msa0167410-mRNA-1 |
| chr1_4 | CDS | 49326676 | 49326928 | 49326676 | ID=Msa0167410-mRNA-1:cds;Parent=Msa0167410-mRNA-1 |
| chr1_4 | CDS | 49327287 | 49328503 | 49327287 | ID=Msa0167410-mRNA-1:cds;Parent=Msa0167410-mRNA-1 |
| chr1_4 | CDS | 49328680 | 49328833 | 49328680 | ID=Msa0167410-mRNA-1:cds;Parent=Msa0167410-mRNA-1 |
| chr1_4 | CDS | 49329017 | 49329336 | 49329017 | ID=Msa0167410-mRNA-1:cds;Parent=Msa0167410-mRNA-1 |
| chr1_4 | three_prime_UTR | 49329337 | 49329503 | 49329337 | ID=Msa0167410-mRNA-1:three_prime_utr;Parent=Msa0167410-mRNA-1 |
| chr1_4 | three_prime_UTR | 49329524 | 49329595 | 49329524 | ID=Msa0167410-mRNA-1:three_prime_utr;Parent=Msa0167410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
