AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0123100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123100 MtrunA17_Chr1g0183461 96.634 713 24 0 1 713 1 713 0.0 1423
Msa0123100 MtrunA17_Chr7g0261581 68.436 716 220 3 1 713 16 728 0.0 978
Msa0123100 MtrunA17_Chr1g0187271 57.997 719 288 7 1 713 22 732 0.0 786
Msa0123100 MtrunA17_Chr1g0152501 44.167 720 380 12 6 712 6 716 0.0 536
Msa0123100 MtrunA17_Chr5g0409291 49.733 561 278 3 40 600 26 582 8.13e-175 513
Msa0123100 MtrunA17_Chr8g0369551 46.379 580 307 3 29 608 10 585 5.06e-168 496
Msa0123100 MtrunA17_Chr8g0369541 40.000 105 60 1 608 712 20 121 7.96e-20 85.9
Msa0123100 MtrunA17_Chr5g0409281 40.952 105 58 2 609 712 9 110 2.24e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0123100 AT4G28600.1 58.832 719 286 3 1 713 25 739 0.0 797
Msa0123100 AT4G28600.2 58.832 719 286 3 1 713 25 739 0.0 797
Msa0123100 AT4G28600.3 58.425 724 286 4 1 713 25 744 0.0 791
Msa0123100 AT2G43040.2 47.781 676 343 5 40 712 32 700 0.0 568
Msa0123100 AT2G43040.1 47.781 676 343 5 40 712 32 700 0.0 568
Msa0123100 AT1G27460.3 41.538 715 379 10 6 712 6 689 1.21e-164 490
Msa0123100 AT1G27460.1 41.958 715 380 10 6 712 6 693 1.40e-164 490
Msa0123100 AT1G27460.2 42.727 550 291 8 6 547 6 539 1.24e-126 387

Find 190 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCGGCGTTCTTTGTTTC+TGG 0.051091 1_3:+49997255 None:intergenic
TTTCCGGTTCACCATGATTA+TGG 0.184771 1_3:+49997224 None:intergenic
TTCATTTGCTCTGTCTGTTT+CGG 0.188123 1_3:-49996346 Msa0123100:CDS
TCATTTGCTCTGTCTGTTTC+GGG 0.193859 1_3:-49996345 Msa0123100:CDS
ATCGAGTTTAGCCAATTATT+TGG 0.205375 1_3:-49996316 Msa0123100:CDS
TACCCTCAGCCTTGTGAAAA+AGG 0.205859 1_3:+49994836 None:intergenic
CAGGCTCTTGAAAGGTTTAA+AGG 0.236026 1_3:-49997142 Msa0123100:intron
CTATTATAGAAAAGTAATTA+AGG 0.239293 1_3:-49998337 Msa0123100:five_prime_UTR
ATCATCTGCACACTCAAAAT+TGG 0.251662 1_3:-49996007 Msa0123100:CDS
CCAATCTTGCAAAGTTATTA+TGG 0.251753 1_3:-49996757 Msa0123100:CDS
CATTCAGCACCAAAGTTATC+AGG 0.259185 1_3:+49996702 None:intergenic
ACACGTTCCCGGTTTGTTAA+TGG 0.260326 1_3:-49996160 Msa0123100:CDS
GGCGAGCACTTCTTCATAAA+TGG 0.260430 1_3:-49996587 Msa0123100:CDS
TTTGTCAATTTGTATTTCTT+TGG 0.265129 1_3:+49994491 None:intergenic
GAGTAATTCTTCCAAATAAT+TGG 0.272977 1_3:+49996305 None:intergenic
CCATAATAACTTTGCAAGAT+TGG 0.280709 1_3:+49996757 None:intergenic
CGGATGAGGGGTTTGGAGTT+TGG 0.285069 1_3:+49998512 None:intergenic
TTCTGCTTCTTCTATATTAC+CGG 0.290062 1_3:+49997852 None:intergenic
TCAGCAAGCTTCCACAATTC+TGG 0.299846 1_3:+49996639 None:intergenic
GCCTCTTCTATGTTGTTTGC+CGG 0.304221 1_3:+49996447 None:intergenic
CAAATTCAGAGCAAAAGTTT+TGG 0.314010 1_3:-49995592 Msa0123100:CDS
TGCAAAGTGCGTCATAAAAC+TGG 0.329264 1_3:-49995830 Msa0123100:CDS
AACAAACCGGGAACGTGTTC+CGG 0.330656 1_3:+49996165 None:intergenic
TTCCGGTTCACCATGATTAT+GGG 0.345463 1_3:+49997225 None:intergenic
CTCTAGAACACAACCCTTTG+AGG 0.353424 1_3:+49994713 None:intergenic
TTCTTGGAAGAAGCTATATA+AGG 0.353884 1_3:-49995569 Msa0123100:intron
GATCTAGCTCTTTGTAATTA+CGG 0.355641 1_3:-49996249 Msa0123100:CDS
GAAAGGCCGGAACACGTTCC+CGG 0.359395 1_3:-49996171 Msa0123100:CDS
TCTAAAAGCAAAATCGTTGC+AGG 0.362819 1_3:-49997161 Msa0123100:CDS
GGAAGATACGAGTATCAAAA+AGG 0.369028 1_3:-49997355 Msa0123100:CDS
GAGGGGTTTGGAGTTTGGTT+TGG 0.369356 1_3:+49998517 None:intergenic
TACTGAAGGGTCTCTCATTC+CGG 0.371242 1_3:+49995912 None:intergenic
AATGGACGGCTCGTTTGTTC+CGG 0.372709 1_3:-49996466 Msa0123100:CDS
CATAATAACTTTGCAAGATT+GGG 0.372836 1_3:+49996758 None:intergenic
GTTTGGAGTTTGGTTTGGTT+TGG 0.374752 1_3:+49998522 None:intergenic
GGAACTTGGAAGTGGAAATA+TGG 0.379485 1_3:-49995352 Msa0123100:CDS
CATAGGAGAAGAGGTGAATC+TGG 0.381742 1_3:-49998027 Msa0123100:five_prime_UTR
TGAATCTTTGCTACAGTCCC+TGG 0.383146 1_3:+49996555 None:intergenic
GTGCGCACGGATGAGGGGTT+TGG 0.383192 1_3:+49998505 None:intergenic
GAAGGTGGTTCCAATGTTAA+AGG 0.388143 1_3:-49995808 Msa0123100:CDS
GTGAAGCTACTTTGTCTTAC+CGG 0.388356 1_3:-49996608 Msa0123100:CDS
AATGTTGCAAAATTCTATCT+TGG 0.388770 1_3:-49996036 Msa0123100:CDS
CTTTGGATCAGACTGGGAAA+TGG 0.392510 1_3:-49995714 Msa0123100:CDS
TCAGAGAGCACTTGAGAGCT+TGG 0.397172 1_3:-49996082 Msa0123100:CDS
GCGTTCTTTGTTTCTGGAAA+GGG 0.399083 1_3:+49997261 None:intergenic
ATCTATTATCAACGCTGCTT+TGG 0.399909 1_3:-49995731 Msa0123100:CDS
TCAGACTGGGAAATGGGATC+AGG 0.402096 1_3:-49995707 Msa0123100:CDS
GCTTCTGCTTGGTATAATCT+TGG 0.405820 1_3:-49994859 Msa0123100:CDS
TGGTTTGGTTTGTGAGAGAG+TGG 0.407754 1_3:+49998537 None:intergenic
CCTACGCTCAGGGGAGCAAT+TGG 0.409024 1_3:-49997983 Msa0123100:CDS
AAGTTATCAGGCAAGCCTTC+AGG 0.409413 1_3:+49996714 None:intergenic
ACAGAATGTATAGACATTTC+CGG 0.415399 1_3:+49997208 None:intergenic
CCGAGATCGTGCTAGGAACT+TGG 0.420476 1_3:-49995366 Msa0123100:CDS
TTTAGAAGCCATTAACAAAC+CGG 0.423076 1_3:+49996152 None:intergenic
TATTATAGAAAAGTAATTAA+GGG 0.428070 1_3:-49998336 Msa0123100:five_prime_UTR
TCTCTCTCTATAGAATTGAA+TGG 0.428768 1_3:-49996392 Msa0123100:CDS
TGGTGCTGAATGTAAATTGC+AGG 0.428911 1_3:-49996691 Msa0123100:CDS
ATCTGAGGCACTTCAAGCCT+TGG 0.438993 1_3:-49995953 Msa0123100:CDS
GAATTTCTCGAAATCAGAAA+TGG 0.439970 1_3:+49995984 None:intergenic
GTACTTCAGCAGTGGAGATT+AGG 0.444856 1_3:+49994959 None:intergenic
CATGGAATCTTTCACTTCGA+TGG 0.444879 1_3:+49996271 None:intergenic
ACCCCTTCTTCTGCAAGACT+AGG 0.448007 1_3:+49996114 None:intergenic
GAAAAGTAATTAAGGGAGAA+AGG 0.449801 1_3:-49998329 Msa0123100:five_prime_UTR
TTCCCATAATCATGGTGAAC+CGG 0.454699 1_3:-49997227 Msa0123100:CDS
TTTGGATCAGACTGGGAAAT+GGG 0.455022 1_3:-49995713 Msa0123100:CDS
GGCGTTCTTTGTTTCTGGAA+AGG 0.457269 1_3:+49997260 None:intergenic
GGCGTGTCTTTCAAAATCTA+AGG 0.457296 1_3:-49995279 Msa0123100:CDS
GTAAGTAAAGTGGAAGATCT+AGG 0.459735 1_3:+49998463 None:intergenic
CCCCTTCTTCTGCAAGACTA+GGG 0.461370 1_3:+49996115 None:intergenic
CGGAGCAGGTAAGGACTTGA+TGG 0.465727 1_3:-49996229 Msa0123100:CDS
ATTAGGCTGCGGACATGGCC+AGG 0.467685 1_3:+49994976 None:intergenic
CAAAGTTATTATGGACATAG+TGG 0.467812 1_3:-49996748 Msa0123100:CDS
ACGCCTCTGCATCATGCCAC+TGG 0.468078 1_3:+49995297 None:intergenic
GAAGGCTTGCCTGATAACTT+TGG 0.468639 1_3:-49996711 Msa0123100:CDS
GGTTTGGTTTGTGAGAGAGT+GGG 0.470978 1_3:+49998538 None:intergenic
CATAAATGGAATCTCGATCC+AGG 0.473610 1_3:-49996573 Msa0123100:CDS
CATCCGAATCTCTTGTCACC+AGG 0.475993 1_3:-49997936 Msa0123100:CDS
CTACGCTCAGGGGAGCAATT+GGG 0.477613 1_3:-49997982 Msa0123100:CDS
TAAAGAGAAAATGAAGAGAA+TGG 0.477756 1_3:+49998413 None:intergenic
GTCCCTGGTGACAAGAGATT+CGG 0.477939 1_3:+49997933 None:intergenic
ACAATGAAGTTCCTACGCTC+AGG 0.478204 1_3:-49997994 Msa0123100:CDS
TCCATTTGAGAACGTAGATT+AGG 0.479915 1_3:+49996483 None:intergenic
TCCTAATCTACGTTCTCAAA+TGG 0.480013 1_3:-49996484 Msa0123100:CDS
CAGTAACCATCCTTTAACAT+TGG 0.480051 1_3:+49995798 None:intergenic
GTCTTTGAGGGAATAGATAT+AGG 0.481239 1_3:-49997310 Msa0123100:CDS
TAAGGGAGAAAGGTTCTCTT+CGG 0.481339 1_3:-49998319 Msa0123100:five_prime_UTR
GAACAAGGTGCGCACGGATG+AGG 0.482666 1_3:+49998498 None:intergenic
AACCCTAGTCTTGCAGAAGA+AGG 0.483388 1_3:-49996117 Msa0123100:CDS
CTCTCTCTATAGAATTGAAT+GGG 0.484122 1_3:-49996391 Msa0123100:CDS
CAGGAAGCTAGAGCATTACT+AGG 0.486649 1_3:-49997376 Msa0123100:CDS
CGTTCTGCCAGCAGTTTCCA+AGG 0.488431 1_3:+49995936 None:intergenic
GATGGAAATTGTAAGTAAAG+TGG 0.492204 1_3:+49998453 None:intergenic
TATTTGGAAGAATTACTCCC+TGG 0.494270 1_3:-49996300 Msa0123100:CDS
GTGACAAGAGATTCGGATGA+AGG 0.497025 1_3:+49997940 None:intergenic
GAAACTGCTGGCAGAACGAC+CGG 0.498236 1_3:-49995931 Msa0123100:CDS
GCTCTTTGTAATTACGGAGC+AGG 0.499405 1_3:-49996243 Msa0123100:CDS
GATGCTTTAGACATTGATCC+TGG 0.500078 1_3:-49994994 Msa0123100:CDS
TTGTAATTACGGAGCAGGTA+AGG 0.501729 1_3:-49996238 Msa0123100:CDS
TCACTTCGATGGATAGTCCC+AGG 0.503053 1_3:+49996282 None:intergenic
AGCTGCATTACACGTCTTTG+AGG 0.505490 1_3:-49997323 Msa0123100:CDS
ATATTCTATAAAACCTCAAA+GGG 0.508646 1_3:-49994726 Msa0123100:three_prime_UTR
AATCGTTGCAGGCTCTTGAA+AGG 0.510742 1_3:-49997150 Msa0123100:CDS
TTGAGCTGCTTCCAGAATTG+TGG 0.513561 1_3:-49996650 Msa0123100:CDS
CGCCTCTGCATCATGCCACT+GGG 0.513605 1_3:+49995298 None:intergenic
AACGCTGCTTTGGATCAGAC+TGG 0.514212 1_3:-49995721 Msa0123100:CDS
AATTACAAAGAGCTAGATCA+TGG 0.514312 1_3:+49996253 None:intergenic
GCTGCATTACACGTCTTTGA+GGG 0.518869 1_3:-49997322 Msa0123100:CDS
CTGAGATGGTATAGTACTGA+AGG 0.523029 1_3:+49995898 None:intergenic
CATATTCTATAAAACCTCAA+AGG 0.523781 1_3:-49994727 Msa0123100:three_prime_UTR
AACAAGGTGCGCACGGATGA+GGG 0.524738 1_3:+49998499 None:intergenic
GCTAAAATTCAAATTGCACT+TGG 0.524807 1_3:-49995664 Msa0123100:CDS
ATTTGGAAGAATTACTCCCT+GGG 0.525471 1_3:-49996299 Msa0123100:CDS
GAATTATCTCTGCGAGAAAG+TGG 0.528266 1_3:-49997832 Msa0123100:CDS
TGGAGATTAGGCTGCGGACA+TGG 0.529432 1_3:+49994971 None:intergenic
AAGAAACATTCCCATAATCA+TGG 0.530663 1_3:-49997235 Msa0123100:CDS
AAGCTGAGTGTACGTCTCAA+TGG 0.530685 1_3:+49995627 None:intergenic
CTTCAAGCCTTGGAAACTGC+TGG 0.530954 1_3:-49995943 Msa0123100:CDS
ACCCTAGTCTTGCAGAAGAA+GGG 0.531321 1_3:-49996116 Msa0123100:CDS
CCAAGTTCCTAGCACGATCT+CGG 0.533706 1_3:+49995366 None:intergenic
GAAAGGTGGTCTAAAATTGA+AGG 0.534995 1_3:+49996366 None:intergenic
GGAAATGTCTATACATTCTG+TGG 0.537831 1_3:-49997206 Msa0123100:CDS
AATTGTTGAGTGATAGAGAA+AGG 0.538244 1_3:-49996188 Msa0123100:CDS
AGGCGTAATGTATGAAGCAA+AGG 0.544212 1_3:-49995049 Msa0123100:CDS
AGAGCACTTGAGAGCTTGGA+CGG 0.546004 1_3:-49996078 Msa0123100:CDS
TCGTGCTAGGAACTTGGAAG+TGG 0.547148 1_3:-49995360 Msa0123100:CDS
AGTGATCATTCTTTCCTACC+TGG 0.549462 1_3:-49997898 Msa0123100:CDS
GGCGTAATGTATGAAGCAAA+GGG 0.550921 1_3:-49995048 Msa0123100:CDS
AATAATTGGCTAAACTCGAT+AGG 0.551034 1_3:+49996319 None:intergenic
TATAGAATATGTCATCTGAA+AGG 0.552996 1_3:+49994739 None:intergenic
CAATGAAGTTCCTACGCTCA+GGG 0.553279 1_3:-49997993 Msa0123100:CDS
CTCAAAGGGTTGTGTTCTAG+AGG 0.557066 1_3:-49994712 Msa0123100:three_prime_UTR
GGGAGAAAGGTTCTCTTCGG+AGG 0.557701 1_3:-49998316 Msa0123100:five_prime_UTR
TGACATCTAGAAGCAGAATA+CGG 0.557828 1_3:+49995248 None:intergenic
ACAGATTGAATGCTTCTGCT+TGG 0.559962 1_3:-49994870 Msa0123100:CDS
CAGACTGGGAAATGGGATCA+GGG 0.561941 1_3:-49995706 Msa0123100:CDS
GTTGAGTGATAGAGAAAGGC+CGG 0.563279 1_3:-49996184 Msa0123100:CDS
CCCTAGTCTTGCAGAAGAAG+GGG 0.568534 1_3:-49996115 Msa0123100:CDS
ATTTGAGAACGTAGATTAGG+AGG 0.571653 1_3:+49996486 None:intergenic
GTGGTTCCAATGTTAAAGGA+TGG 0.575049 1_3:-49995804 Msa0123100:CDS
GGAGAAAGGTTCTCTTCGGA+GGG 0.575124 1_3:-49998315 Msa0123100:five_prime_UTR
TTCCCAGTGGCATGATGCAG+AGG 0.575200 1_3:-49995300 Msa0123100:CDS
CACTTCGATGGATAGTCCCA+GGG 0.576038 1_3:+49996283 None:intergenic
GAATGAGAAATGAAATGAGA+TGG 0.576105 1_3:+49998435 None:intergenic
AAAGTATGACATAGGAGAAG+AGG 0.577520 1_3:-49998036 Msa0123100:five_prime_UTR
TGGAAAACTTGATCACAAGT+TGG 0.577745 1_3:-49997878 Msa0123100:CDS
AGGGTAACCGAGATCGTGCT+AGG 0.578066 1_3:-49995373 Msa0123100:CDS
ACTTCCTGAAAAGAAGTCCC+TGG 0.578708 1_3:+49997918 None:intergenic
CAGCGTATTCTAAACTGAGA+TGG 0.582160 1_3:+49995884 None:intergenic
GAAGAAGAACAAGGTGCGCA+CGG 0.590592 1_3:+49998492 None:intergenic
TGTGAGAGAGTGGGGTCCAG+TGG 0.591367 1_3:+49998547 None:intergenic
GTTTGGTTTGTGAGAGAGTG+GGG 0.592439 1_3:+49998539 None:intergenic
AAGGATGGTTACTGTTGGCA+CGG 0.592491 1_3:-49995789 Msa0123100:CDS
TAGTGCTGAAAGTATGACAT+AGG 0.595411 1_3:-49998044 Msa0123100:five_prime_UTR
CAGCTCAACTGCCTTGCTCA+CGG 0.599337 1_3:+49996665 None:intergenic
GATTATGGGAATGTTTCTTG+CGG 0.600308 1_3:+49997239 None:intergenic
GTGGAATCTTCATTGCCTGA+AGG 0.600900 1_3:-49996729 Msa0123100:CDS
TTAGAAGCCATTAACAAACC+GGG 0.606436 1_3:+49996153 None:intergenic
ATAAATGGAATCTCGATCCA+GGG 0.607813 1_3:-49996572 Msa0123100:CDS
ATTGCAGGAGACCGTGAGCA+AGG 0.607861 1_3:-49996676 Msa0123100:CDS
ATTTATGAAGAAGTGCTCGC+CGG 0.609816 1_3:+49996589 None:intergenic
TGTCATCTGAAAGGTTCAAG+TGG 0.610618 1_3:+49994748 None:intergenic
ACGCTGCTTTGGATCAGACT+GGG 0.611127 1_3:-49995720 Msa0123100:CDS
TGAGATGGTATAGTACTGAA+GGG 0.615082 1_3:+49995899 None:intergenic
CCAATTGCTCCCCTGAGCGT+AGG 0.615359 1_3:+49997983 None:intergenic
CGCTCAGGGGAGCAATTGGG+AGG 0.616293 1_3:-49997979 Msa0123100:CDS
AGGTAAGGACTTGATGGCAA+TGG 0.618555 1_3:-49996223 Msa0123100:CDS
GCGTCTAAGTACTTCAGCAG+TGG 0.622569 1_3:+49994951 None:intergenic
AGCAAAGGGCCTTTACAAAG+AGG 0.624063 1_3:-49995034 Msa0123100:CDS
ACAAGGTGCGCACGGATGAG+GGG 0.624418 1_3:+49998500 None:intergenic
AAGTGCGTCATAAAACTGGA+AGG 0.625420 1_3:-49995826 Msa0123100:CDS
AAACAGACAGAGCAAATGAA+AGG 0.626924 1_3:+49996349 None:intergenic
GTTTAGAATACGCTGAACAA+AGG 0.629222 1_3:-49995876 Msa0123100:CDS
GAAATGTCTATACATTCTGT+GGG 0.629408 1_3:-49997205 Msa0123100:CDS
TGTTAAAGGATGGTTACTGT+TGG 0.631562 1_3:-49995794 Msa0123100:CDS
ATCCGAATCTCTTGTCACCA+GGG 0.633299 1_3:-49997935 Msa0123100:CDS
AATCTACGTTCTCAAATGGA+CGG 0.634441 1_3:-49996480 Msa0123100:CDS
GCTTCTAGATGTCATGCACT+CGG 0.643649 1_3:-49995239 Msa0123100:intron
CTTGATCACAAGTTGGACAC+CGG 0.647590 1_3:-49997871 Msa0123100:CDS
TCCGGCAAACAACATAGAAG+AGG 0.651451 1_3:-49996448 Msa0123100:CDS
AGAAGAGGTGAATCTGGACA+AGG 0.654473 1_3:-49998021 Msa0123100:five_prime_UTR
CAGCAGTGGAGATTAGGCTG+CGG 0.655573 1_3:+49994965 None:intergenic
GAAATTCAAGAGACAATCTG+AGG 0.658610 1_3:-49995968 Msa0123100:CDS
AGGAAAGAAGAAGAAGAACA+AGG 0.663454 1_3:+49998483 None:intergenic
CAGACAGAGCAAATGAAAGG+TGG 0.667903 1_3:+49996352 None:intergenic
GAGGTGAATCTGGACAAGGA+AGG 0.672537 1_3:-49998017 Msa0123100:five_prime_UTR
TGCGTCATAAAACTGGAAGG+TGG 0.682113 1_3:-49995823 Msa0123100:CDS
AATGAAGTTCCTACGCTCAG+GGG 0.692085 1_3:-49997992 Msa0123100:CDS
TGTACATCAGTCTTTCCCAG+TGG 0.736555 1_3:-49995313 Msa0123100:CDS
TAAGACAAAGTAGCTTCACG+AGG 0.755950 1_3:+49996612 None:intergenic
AAGTGGCGTGTTAAACTACG+AGG 0.762852 1_3:-49997815 Msa0123100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATAAATAAATA+AGG - chr1_3:49998470-49998489 Msa0123100:five_prime_UTR 0.0%
!! TATTATAGAAAAGTAATTAA+GGG - chr1_3:49994703-49994722 Msa0123100:three_prime_UTR 10.0%
!!! CAATAGTTTTTTTTTTTTTT+TGG + chr1_3:49995580-49995599 None:intergenic 10.0%
!! AAATAAATAAATAAATAAGG+TGG - chr1_3:49998477-49998496 Msa0123100:five_prime_UTR 10.0%
!! CTATTATAGAAAAGTAATTA+AGG - chr1_3:49994702-49994721 Msa0123100:three_prime_UTR 15.0%
!!! ATAATAGTTTAGTTTAGTTT+AGG - chr1_3:49994915-49994934 Msa0123100:CDS 15.0%
!!! TAATAGTTTAGTTTAGTTTA+GGG - chr1_3:49994916-49994935 Msa0123100:CDS 15.0%
!! CATAATATATGAGAAAATTA+AGG + chr1_3:49994967-49994986 None:intergenic 15.0%
!!! TTTTTCTTTTCAAATTTAAC+AGG - chr1_3:49997970-49997989 Msa0123100:CDS 15.0%
!!! TTTTCTATAATAGCTTCAAT+AGG + chr1_3:49994695-49994714 None:intergenic 20.0%
!! TAAAACCAAGTTAATAAAAC+AGG + chr1_3:49994834-49994853 None:intergenic 20.0%
!!! TAAAAAAGTGAAGTATTTTG+AGG + chr1_3:49995257-49995276 None:intergenic 20.0%
!!! TTTGTTTTCATAAACTATCT+TGG + chr1_3:49996120-49996139 None:intergenic 20.0%
!! GTGACTATAACTATTAAAAT+TGG - chr1_3:49997554-49997573 Msa0123100:intron 20.0%
!! ATATTCTATAAAACCTCAAA+GGG - chr1_3:49998313-49998332 Msa0123100:five_prime_UTR 20.0%
!!! AAATATTTTGACAAGTTCTA+TGG + chr1_3:49998505-49998524 None:intergenic 20.0%
! TAAAGAGAAAATGAAGAGAA+TGG + chr1_3:49994629-49994648 None:intergenic 25.0%
!!! TTGTTCCTGTTTTATTAACT+TGG - chr1_3:49994826-49994845 Msa0123100:CDS 25.0%
! TTATTCATGAACTATCTTGA+TGG - chr1_3:49994888-49994907 Msa0123100:CDS 25.0%
!!! CACTTTTTTAAGTTATCATG+TGG - chr1_3:49995267-49995286 Msa0123100:CDS 25.0%
!! TAAGTTATCATGTGGATTTT+TGG - chr1_3:49995275-49995294 Msa0123100:CDS 25.0%
!!! TTTTTTTTTGGGTACATAGA+CGG + chr1_3:49995568-49995587 None:intergenic 25.0%
! TTGTAGCTACTATTCTAATT+TGG - chr1_3:49995617-49995636 Msa0123100:CDS 25.0%
! AAACTATCTTGGATATCTAA+TGG + chr1_3:49996109-49996128 None:intergenic 25.0%
! CATAATAACTTTGCAAGATT+GGG + chr1_3:49996284-49996303 None:intergenic 25.0%
!!! GTTGTTTTTCTTCTATATAG+TGG - chr1_3:49996517-49996536 Msa0123100:CDS 25.0%
!!! TTTTTCTTCTATATAGTGGA+GGG - chr1_3:49996521-49996540 Msa0123100:CDS 25.0%
! GAGTAATTCTTCCAAATAAT+TGG + chr1_3:49996737-49996756 None:intergenic 25.0%
! AATGTTGCAAAATTCTATCT+TGG - chr1_3:49997003-49997022 Msa0123100:intron 25.0%
! AAATATTCAATCAGTACAAG+TGG + chr1_3:49997509-49997528 None:intergenic 25.0%
! AAATTGGATAAATGTTTCAC+TGG - chr1_3:49997570-49997589 Msa0123100:intron 25.0%
! TCACAAATGGTATAGATAAA+AGG + chr1_3:49997645-49997664 None:intergenic 25.0%
! TTATCTATACCATTTGTGAT+AGG - chr1_3:49997646-49997665 Msa0123100:intron 25.0%
! TATCTATACCATTTGTGATA+GGG - chr1_3:49997647-49997666 Msa0123100:intron 25.0%
! CATCTCAAGAAAAAGTTAAA+TGG + chr1_3:49997885-49997904 None:intergenic 25.0%
!!! CATTTAACTTTTTCTTGAGA+TGG - chr1_3:49997883-49997902 Msa0123100:CDS 25.0%
! TTCAAGTGATAATAATCTGT+TGG + chr1_3:49997917-49997936 None:intergenic 25.0%
! TATAGAATATGTCATCTGAA+AGG + chr1_3:49998303-49998322 None:intergenic 25.0%
! CATATTCTATAAAACCTCAA+AGG - chr1_3:49998312-49998331 Msa0123100:five_prime_UTR 25.0%
GATGGAAATTGTAAGTAAAG+TGG + chr1_3:49994589-49994608 None:intergenic 30.0%
GAATGAGAAATGAAATGAGA+TGG + chr1_3:49994607-49994626 None:intergenic 30.0%
GAAAAGTAATTAAGGGAGAA+AGG - chr1_3:49994710-49994729 Msa0123100:three_prime_UTR 30.0%
!!! AAGGGTACGTTTTTTTATAC+TGG - chr1_3:49994756-49994775 Msa0123100:CDS 30.0%
AAAATAGAGGTAATTCAGCT+GGG + chr1_3:49994802-49994821 None:intergenic 30.0%
AAAAATAGAGGTAATTCAGC+TGG + chr1_3:49994803-49994822 None:intergenic 30.0%
!!! GCTGAATTACCTCTATTTTT+TGG - chr1_3:49994803-49994822 Msa0123100:CDS 30.0%
! GTTTAGTTTAGGGACTAAAT+TGG - chr1_3:49994926-49994945 Msa0123100:CDS 30.0%
TTCTGCTTCTTCTATATTAC+CGG + chr1_3:49995190-49995209 None:intergenic 30.0%
!! TGGATTTTTGGATATGCATT+TGG - chr1_3:49995287-49995306 Msa0123100:CDS 30.0%
ATTCAGCGTTTGTAGAATTA+AGG - chr1_3:49995322-49995341 Msa0123100:CDS 30.0%
AATAAGCTGTTTATCCAAAC+AGG + chr1_3:49995348-49995367 None:intergenic 30.0%
AAAATATGCATGCAATCTAC+AGG - chr1_3:49995644-49995663 Msa0123100:CDS 30.0%
AAGAAACATTCCCATAATCA+TGG - chr1_3:49995804-49995823 Msa0123100:CDS 30.0%
ACAGAATGTATAGACATTTC+CGG + chr1_3:49995834-49995853 None:intergenic 30.0%
GAAATGTCTATACATTCTGT+GGG - chr1_3:49995834-49995853 Msa0123100:CDS 30.0%
TAAGAATCAAAAAACCAGCA+AGG + chr1_3:49995926-49995945 None:intergenic 30.0%
!!! CTCTCTTTTTTTGTATGTCA+AGG - chr1_3:49995952-49995971 Msa0123100:CDS 30.0%
TTTGTATGTCAAGGAATTTG+TGG - chr1_3:49995961-49995980 Msa0123100:CDS 30.0%
TAGCATATACGAAAACAGAT+TGG - chr1_3:49996192-49996211 Msa0123100:CDS 30.0%
!! AGATTGGTTTCAATAACCAT+AGG - chr1_3:49996208-49996227 Msa0123100:CDS 30.0%
CCATAATAACTTTGCAAGAT+TGG + chr1_3:49996285-49996304 None:intergenic 30.0%
CCAATCTTGCAAAGTTATTA+TGG - chr1_3:49996282-49996301 Msa0123100:CDS 30.0%
CAAAGTTATTATGGACATAG+TGG - chr1_3:49996291-49996310 Msa0123100:CDS 30.0%
! GTTTTTCTTCTATATAGTGG+AGG - chr1_3:49996520-49996539 Msa0123100:CDS 30.0%
!! TTTTCTTCTATATAGTGGAG+GGG - chr1_3:49996522-49996541 Msa0123100:CDS 30.0%
TCTCTCTCTATAGAATTGAA+TGG - chr1_3:49996647-49996666 Msa0123100:CDS 30.0%
CTCTCTCTATAGAATTGAAT+GGG - chr1_3:49996648-49996667 Msa0123100:CDS 30.0%
AATAATTGGCTAAACTCGAT+AGG + chr1_3:49996723-49996742 None:intergenic 30.0%
ATCGAGTTTAGCCAATTATT+TGG - chr1_3:49996723-49996742 Msa0123100:CDS 30.0%
AATTACAAAGAGCTAGATCA+TGG + chr1_3:49996789-49996808 None:intergenic 30.0%
!! GATCTAGCTCTTTGTAATTA+CGG - chr1_3:49996790-49996809 Msa0123100:intron 30.0%
AATTGTTGAGTGATAGAGAA+AGG - chr1_3:49996851-49996870 Msa0123100:intron 30.0%
TTTAGAAGCCATTAACAAAC+CGG + chr1_3:49996890-49996909 None:intergenic 30.0%
GAATTTCTCGAAATCAGAAA+TGG + chr1_3:49997058-49997077 None:intergenic 30.0%
! ATCTGCTCAAAAACAGTTTT+TGG - chr1_3:49997278-49997297 Msa0123100:CDS 30.0%
GCTAAAATTCAAATTGCACT+TGG - chr1_3:49997375-49997394 Msa0123100:CDS 30.0%
! CAAATTCAGAGCAAAAGTTT+TGG - chr1_3:49997447-49997466 Msa0123100:intron 30.0%
TTCTTGGAAGAAGCTATATA+AGG - chr1_3:49997470-49997489 Msa0123100:intron 30.0%
! GATTGAATATTTCTGCAGAA+TGG - chr1_3:49997517-49997536 Msa0123100:intron 30.0%
GGTAGAAGCAAAACAAAAAA+TGG - chr1_3:49998348-49998367 Msa0123100:five_prime_UTR 30.0%
AGGAAAGAAGAAGAAGAACA+AGG + chr1_3:49994559-49994578 None:intergenic 35.0%
GTAAGTAAAGTGGAAGATCT+AGG + chr1_3:49994579-49994598 None:intergenic 35.0%
CAGGAACAACCAAAAAATAG+AGG + chr1_3:49994815-49994834 None:intergenic 35.0%
! TAGTGCTGAAAGTATGACAT+AGG - chr1_3:49994995-49995014 Msa0123100:CDS 35.0%
AAAGTATGACATAGGAGAAG+AGG - chr1_3:49995003-49995022 Msa0123100:CDS 35.0%
! AACTTGTGATCAAGTTTTCC+AGG + chr1_3:49995162-49995181 None:intergenic 35.0%
TGGAAAACTTGATCACAAGT+TGG - chr1_3:49995161-49995180 Msa0123100:intron 35.0%
TTGTAGAATTAAGGCCTGTT+TGG - chr1_3:49995331-49995350 Msa0123100:CDS 35.0%
!! TTTGTGTGTGAGTTTTCAAG+TGG - chr1_3:49995531-49995550 Msa0123100:intron 35.0%
GGAAGATACGAGTATCAAAA+AGG - chr1_3:49995684-49995703 Msa0123100:CDS 35.0%
! GTCTTTGAGGGAATAGATAT+AGG - chr1_3:49995729-49995748 Msa0123100:CDS 35.0%
!! GAAAGGGCAATTTTGATCTT+AGG + chr1_3:49995765-49995784 None:intergenic 35.0%
GATTATGGGAATGTTTCTTG+CGG + chr1_3:49995803-49995822 None:intergenic 35.0%
GGAAATGTCTATACATTCTG+TGG - chr1_3:49995833-49995852 Msa0123100:CDS 35.0%
TCTAAAAGCAAAATCGTTGC+AGG - chr1_3:49995878-49995897 Msa0123100:CDS 35.0%
TGCAAAACAAGGTAGATTAC+GGG + chr1_3:49996015-49996034 None:intergenic 35.0%
GTGCAAAACAAGGTAGATTA+CGG + chr1_3:49996016-49996035 None:intergenic 35.0%
!!! TAATCTACCTTGTTTTGCAC+TGG - chr1_3:49996016-49996035 Msa0123100:CDS 35.0%
ACACTTTGACTAATGTCCTA+TGG + chr1_3:49996227-49996246 None:intergenic 35.0%
ATAAATGGAATCTCGATCCA+GGG - chr1_3:49996467-49996486 Msa0123100:CDS 35.0%
ATTTGAGAACGTAGATTAGG+AGG + chr1_3:49996556-49996575 None:intergenic 35.0%
TCCTAATCTACGTTCTCAAA+TGG - chr1_3:49996555-49996574 Msa0123100:CDS 35.0%
TCCATTTGAGAACGTAGATT+AGG + chr1_3:49996559-49996578 None:intergenic 35.0%
AATCTACGTTCTCAAATGGA+CGG - chr1_3:49996559-49996578 Msa0123100:CDS 35.0%
! GAAAGGTGGTCTAAAATTGA+AGG + chr1_3:49996676-49996695 None:intergenic 35.0%
AAACAGACAGAGCAAATGAA+AGG + chr1_3:49996693-49996712 None:intergenic 35.0%
TTCATTTGCTCTGTCTGTTT+CGG - chr1_3:49996693-49996712 Msa0123100:CDS 35.0%
TATTTGGAAGAATTACTCCC+TGG - chr1_3:49996739-49996758 Msa0123100:CDS 35.0%
ATTTGGAAGAATTACTCCCT+GGG - chr1_3:49996740-49996759 Msa0123100:CDS 35.0%
TTAGAAGCCATTAACAAACC+GGG + chr1_3:49996889-49996908 None:intergenic 35.0%
ATCATCTGCACACTCAAAAT+TGG - chr1_3:49997032-49997051 Msa0123100:intron 35.0%
GAAATTCAAGAGACAATCTG+AGG - chr1_3:49997071-49997090 Msa0123100:intron 35.0%
! TGAGATGGTATAGTACTGAA+GGG + chr1_3:49997143-49997162 None:intergenic 35.0%
! GTTTAGAATACGCTGAACAA+AGG - chr1_3:49997163-49997182 Msa0123100:CDS 35.0%
CAGTAACCATCCTTTAACAT+TGG + chr1_3:49997244-49997263 None:intergenic 35.0%
TGTTAAAGGATGGTTACTGT+TGG - chr1_3:49997245-49997264 Msa0123100:CDS 35.0%
!! TGCTCAAAAACAGTTTTTGG+AGG - chr1_3:49997281-49997300 Msa0123100:CDS 35.0%
ATCTATTATCAACGCTGCTT+TGG - chr1_3:49997308-49997327 Msa0123100:CDS 35.0%
!!! AGAGCAAAAGTTTTGGTTCT+TGG - chr1_3:49997454-49997473 Msa0123100:intron 35.0%
TGACATCTAGAAGCAGAATA+CGG + chr1_3:49997794-49997813 None:intergenic 35.0%
!!! CTTTTAGAGCCTCTTTGTAA+AGG + chr1_3:49998017-49998036 None:intergenic 35.0%
!!! TGCAGTCAGAACTTTTTTGA+CGG - chr1_3:49998131-49998150 Msa0123100:intron 35.0%
!! TAATCTTGGCCTTTTTCACA+AGG - chr1_3:49998194-49998213 Msa0123100:intron 35.0%
!! GTTTGGAGTTTGGTTTGGTT+TGG + chr1_3:49994520-49994539 None:intergenic 40.0%
TAAGGGAGAAAGGTTCTCTT+CGG - chr1_3:49994720-49994739 Msa0123100:three_prime_UTR 40.0%
! TTCGGAGGGTTTTTGTTGAA+GGG - chr1_3:49994738-49994757 Msa0123100:exon 40.0%
! GCATCTCAATTTTCTGCTGT+CGG - chr1_3:49994860-49994879 Msa0123100:CDS 40.0%
AGTGATCATTCTTTCCTACC+TGG - chr1_3:49995141-49995160 Msa0123100:intron 40.0%
! TGTGATCAAGTTTTCCAGGT+AGG + chr1_3:49995158-49995177 None:intergenic 40.0%
GAATTATCTCTGCGAGAAAG+TGG - chr1_3:49995207-49995226 Msa0123100:intron 40.0%
!! TTTTGGGTACATAGACGGAA+TGG + chr1_3:49995563-49995582 None:intergenic 40.0%
!! GCGTTCTTTGTTTCTGGAAA+GGG + chr1_3:49995781-49995800 None:intergenic 40.0%
TTCCCATAATCATGGTGAAC+CGG - chr1_3:49995812-49995831 Msa0123100:CDS 40.0%
TTCCGGTTCACCATGATTAT+GGG + chr1_3:49995817-49995836 None:intergenic 40.0%
TTTCCGGTTCACCATGATTA+TGG + chr1_3:49995818-49995837 None:intergenic 40.0%
CAGGCTCTTGAAAGGTTTAA+AGG - chr1_3:49995897-49995916 Msa0123100:CDS 40.0%
AGGTTTAAAGGTAACCTTGC+TGG - chr1_3:49995909-49995928 Msa0123100:CDS 40.0%
! TTGTGGTTTTTCGCTGCATA+TGG - chr1_3:49995978-49995997 Msa0123100:CDS 40.0%
CATTCAGCACCAAAGTTATC+AGG + chr1_3:49996340-49996359 None:intergenic 40.0%
! TGGTGCTGAATGTAAATTGC+AGG - chr1_3:49996348-49996367 Msa0123100:CDS 40.0%
TAAGACAAAGTAGCTTCACG+AGG + chr1_3:49996430-49996449 None:intergenic 40.0%
! GTGAAGCTACTTTGTCTTAC+CGG - chr1_3:49996431-49996450 Msa0123100:CDS 40.0%
!! ATTTATGAAGAAGTGCTCGC+CGG + chr1_3:49996453-49996472 None:intergenic 40.0%
CATAAATGGAATCTCGATCC+AGG - chr1_3:49996466-49996485 Msa0123100:CDS 40.0%
TCATTTGCTCTGTCTGTTTC+GGG - chr1_3:49996694-49996713 Msa0123100:CDS 40.0%
CATGGAATCTTTCACTTCGA+TGG + chr1_3:49996771-49996790 None:intergenic 40.0%
TTGTAATTACGGAGCAGGTA+AGG - chr1_3:49996801-49996820 Msa0123100:intron 40.0%
! CTGAGATGGTATAGTACTGA+AGG + chr1_3:49997144-49997163 None:intergenic 40.0%
CAGCGTATTCTAAACTGAGA+TGG + chr1_3:49997158-49997177 None:intergenic 40.0%
TGCAAAGTGCGTCATAAAAC+TGG - chr1_3:49997209-49997228 Msa0123100:CDS 40.0%
AAGTGCGTCATAAAACTGGA+AGG - chr1_3:49997213-49997232 Msa0123100:CDS 40.0%
GAAGGTGGTTCCAATGTTAA+AGG - chr1_3:49997231-49997250 Msa0123100:CDS 40.0%
GTGGTTCCAATGTTAAAGGA+TGG - chr1_3:49997235-49997254 Msa0123100:CDS 40.0%
TTTGGATCAGACTGGGAAAT+GGG - chr1_3:49997326-49997345 Msa0123100:CDS 40.0%
AGGTAAACAGCTAGAACAGA+AGG + chr1_3:49997625-49997644 None:intergenic 40.0%
GGAACTTGGAAGTGGAAATA+TGG - chr1_3:49997687-49997706 Msa0123100:intron 40.0%
GGCGTGTCTTTCAAAATCTA+AGG - chr1_3:49997760-49997779 Msa0123100:intron 40.0%
AGGCGTAATGTATGAAGCAA+AGG - chr1_3:49997990-49998009 Msa0123100:CDS 40.0%
GGCGTAATGTATGAAGCAAA+GGG - chr1_3:49997991-49998010 Msa0123100:CDS 40.0%
! GATGCTTTAGACATTGATCC+TGG - chr1_3:49998045-49998064 Msa0123100:intron 40.0%
! GTCAAAAAAGTTCTGACTGC+AGG + chr1_3:49998132-49998151 None:intergenic 40.0%
!!! CTTTTTTGACGGATGCTCTA+CGG - chr1_3:49998142-49998161 Msa0123100:intron 40.0%
ACAGATTGAATGCTTCTGCT+TGG - chr1_3:49998169-49998188 Msa0123100:intron 40.0%
GCTTCTGCTTGGTATAATCT+TGG - chr1_3:49998180-49998199 Msa0123100:intron 40.0%
! CGAAGCTACAGAATGTTTTC+AGG - chr1_3:49998242-49998261 Msa0123100:intron 40.0%
TGTCATCTGAAAGGTTCAAG+TGG + chr1_3:49998294-49998313 None:intergenic 40.0%
!! GTTTGGTTTGTGAGAGAGTG+GGG + chr1_3:49994503-49994522 None:intergenic 45.0%
!! GGTTTGGTTTGTGAGAGAGT+GGG + chr1_3:49994504-49994523 None:intergenic 45.0%
!! TGGTTTGGTTTGTGAGAGAG+TGG + chr1_3:49994505-49994524 None:intergenic 45.0%
! CTTCGGAGGGTTTTTGTTGA+AGG - chr1_3:49994737-49994756 Msa0123100:exon 45.0%
CATAGGAGAAGAGGTGAATC+TGG - chr1_3:49995012-49995031 Msa0123100:CDS 45.0%
AGAAGAGGTGAATCTGGACA+AGG - chr1_3:49995018-49995037 Msa0123100:CDS 45.0%
ACAATGAAGTTCCTACGCTC+AGG - chr1_3:49995045-49995064 Msa0123100:CDS 45.0%
CAATGAAGTTCCTACGCTCA+GGG - chr1_3:49995046-49995065 Msa0123100:CDS 45.0%
AATGAAGTTCCTACGCTCAG+GGG - chr1_3:49995047-49995066 Msa0123100:CDS 45.0%
GTGACAAGAGATTCGGATGA+AGG + chr1_3:49995102-49995121 None:intergenic 45.0%
ATCCGAATCTCTTGTCACCA+GGG - chr1_3:49995104-49995123 Msa0123100:intron 45.0%
ACTTCCTGAAAAGAAGTCCC+TGG + chr1_3:49995124-49995143 None:intergenic 45.0%
! CTTGATCACAAGTTGGACAC+CGG - chr1_3:49995168-49995187 Msa0123100:intron 45.0%
AAGTGGCGTGTTAAACTACG+AGG - chr1_3:49995224-49995243 Msa0123100:intron 45.0%
! CAGGAAGCTAGAGCATTACT+AGG - chr1_3:49995663-49995682 Msa0123100:CDS 45.0%
AGCTGCATTACACGTCTTTG+AGG - chr1_3:49995716-49995735 Msa0123100:CDS 45.0%
GCTGCATTACACGTCTTTGA+GGG - chr1_3:49995717-49995736 Msa0123100:CDS 45.0%
!! GGCGTTCTTTGTTTCTGGAA+AGG + chr1_3:49995782-49995801 None:intergenic 45.0%
AATCGTTGCAGGCTCTTGAA+AGG - chr1_3:49995889-49995908 Msa0123100:CDS 45.0%
AGTCTCACCAGTGCAAAACA+AGG + chr1_3:49996026-49996045 None:intergenic 45.0%
! TTTGCACTGGTGAGACTGTT+TGG - chr1_3:49996029-49996048 Msa0123100:CDS 45.0%
GTGGAATCTTCATTGCCTGA+AGG - chr1_3:49996310-49996329 Msa0123100:CDS 45.0%
AAGTTATCAGGCAAGCCTTC+AGG + chr1_3:49996328-49996347 None:intergenic 45.0%
GAAGGCTTGCCTGATAACTT+TGG - chr1_3:49996328-49996347 Msa0123100:CDS 45.0%
TTGAGCTGCTTCCAGAATTG+TGG - chr1_3:49996389-49996408 Msa0123100:CDS 45.0%
TCAGCAAGCTTCCACAATTC+TGG + chr1_3:49996403-49996422 None:intergenic 45.0%
GGCGAGCACTTCTTCATAAA+TGG - chr1_3:49996452-49996471 Msa0123100:CDS 45.0%
TGAATCTTTGCTACAGTCCC+TGG + chr1_3:49996487-49996506 None:intergenic 45.0%
TCCGGCAAACAACATAGAAG+AGG - chr1_3:49996591-49996610 Msa0123100:CDS 45.0%
! GCCTCTTCTATGTTGTTTGC+CGG + chr1_3:49996595-49996614 None:intergenic 45.0%
CAGACAGAGCAAATGAAAGG+TGG + chr1_3:49996690-49996709 None:intergenic 45.0%
GCTCTTTGTAATTACGGAGC+AGG - chr1_3:49996796-49996815 Msa0123100:intron 45.0%
! AGGTAAGGACTTGATGGCAA+TGG - chr1_3:49996816-49996835 Msa0123100:intron 45.0%
GTTGAGTGATAGAGAAAGGC+CGG - chr1_3:49996855-49996874 Msa0123100:intron 45.0%
!! ACACGTTCCCGGTTTGTTAA+TGG - chr1_3:49996879-49996898 Msa0123100:intron 45.0%
!! AACCCTAGTCTTGCAGAAGA+AGG - chr1_3:49996922-49996941 Msa0123100:intron 45.0%
!! ACCCTAGTCTTGCAGAAGAA+GGG - chr1_3:49996923-49996942 Msa0123100:intron 45.0%
TACTGAAGGGTCTCTCATTC+CGG + chr1_3:49997130-49997149 None:intergenic 45.0%
TGCGTCATAAAACTGGAAGG+TGG - chr1_3:49997216-49997235 Msa0123100:CDS 45.0%
AAGGATGGTTACTGTTGGCA+CGG - chr1_3:49997250-49997269 Msa0123100:CDS 45.0%
CTTTGGATCAGACTGGGAAA+TGG - chr1_3:49997325-49997344 Msa0123100:CDS 45.0%
AAGCTGAGTGTACGTCTCAA+TGG + chr1_3:49997415-49997434 None:intergenic 45.0%
CTCGGTTACCCTATCACAAA+TGG + chr1_3:49997658-49997677 None:intergenic 45.0%
TGTACATCAGTCTTTCCCAG+TGG - chr1_3:49997726-49997745 Msa0123100:intron 45.0%
GCTTCTAGATGTCATGCACT+CGG - chr1_3:49997800-49997819 Msa0123100:intron 45.0%
AGCAAAGGGCCTTTACAAAG+AGG - chr1_3:49998005-49998024 Msa0123100:exon 45.0%
GTACTTCAGCAGTGGAGATT+AGG + chr1_3:49998083-49998102 None:intergenic 45.0%
! TACCCTCAGCCTTGTGAAAA+AGG + chr1_3:49998206-49998225 None:intergenic 45.0%
!! CTCTAGAACACAACCCTTTG+AGG + chr1_3:49998329-49998348 None:intergenic 45.0%
CTCAAAGGGTTGTGTTCTAG+AGG - chr1_3:49998327-49998346 Msa0123100:five_prime_UTR 45.0%
!!! AATAGTTTTTTTTTTTTTTT+GGG + chr1_3:49995579-49995598 None:intergenic 5.0%
! GAGGGGTTTGGAGTTTGGTT+TGG + chr1_3:49994525-49994544 None:intergenic 50.0%
GAAGAAGAACAAGGTGCGCA+CGG + chr1_3:49994550-49994569 None:intergenic 50.0%
GGAGAAAGGTTCTCTTCGGA+GGG - chr1_3:49994724-49994743 Msa0123100:three_prime_UTR 50.0%
GAGGTGAATCTGGACAAGGA+AGG - chr1_3:49995022-49995041 Msa0123100:CDS 50.0%
CATCCGAATCTCTTGTCACC+AGG - chr1_3:49995103-49995122 Msa0123100:intron 50.0%
GTCCCTGGTGACAAGAGATT+CGG + chr1_3:49995109-49995128 None:intergenic 50.0%
! GTCACCAGGGACTTCTTTTC+AGG - chr1_3:49995117-49995136 Msa0123100:intron 50.0%
! CTTGCGGCGTTCTTTGTTTC+TGG + chr1_3:49995787-49995806 None:intergenic 50.0%
AATGGACGGCTCGTTTGTTC+CGG - chr1_3:49996573-49996592 Msa0123100:CDS 50.0%
CACTTCGATGGATAGTCCCA+GGG + chr1_3:49996759-49996778 None:intergenic 50.0%
TCACTTCGATGGATAGTCCC+AGG + chr1_3:49996760-49996779 None:intergenic 50.0%
AACAAACCGGGAACGTGTTC+CGG + chr1_3:49996877-49996896 None:intergenic 50.0%
CCCCTTCTTCTGCAAGACTA+GGG + chr1_3:49996927-49996946 None:intergenic 50.0%
!! CCCTAGTCTTGCAGAAGAAG+GGG - chr1_3:49996924-49996943 Msa0123100:intron 50.0%
ACCCCTTCTTCTGCAAGACT+AGG + chr1_3:49996928-49996947 None:intergenic 50.0%
!! TCAGAGAGCACTTGAGAGCT+TGG - chr1_3:49996957-49996976 Msa0123100:intron 50.0%
! AGAGCACTTGAGAGCTTGGA+CGG - chr1_3:49996961-49996980 Msa0123100:intron 50.0%
! ATCTGAGGCACTTCAAGCCT+TGG - chr1_3:49997086-49997105 Msa0123100:intron 50.0%
CTTCAAGCCTTGGAAACTGC+TGG - chr1_3:49997096-49997115 Msa0123100:intron 50.0%
! AACGCTGCTTTGGATCAGAC+TGG - chr1_3:49997318-49997337 Msa0123100:CDS 50.0%
! ACGCTGCTTTGGATCAGACT+GGG - chr1_3:49997319-49997338 Msa0123100:CDS 50.0%
TCAGACTGGGAAATGGGATC+AGG - chr1_3:49997332-49997351 Msa0123100:CDS 50.0%
CAGACTGGGAAATGGGATCA+GGG - chr1_3:49997333-49997352 Msa0123100:CDS 50.0%
CCAAGTTCCTAGCACGATCT+CGG + chr1_3:49997676-49997695 None:intergenic 50.0%
TCGTGCTAGGAACTTGGAAG+TGG - chr1_3:49997679-49997698 Msa0123100:intron 50.0%
GCGTCTAAGTACTTCAGCAG+TGG + chr1_3:49998091-49998110 None:intergenic 50.0%
!! TGGCCTTTTTCACAAGGCTG+AGG - chr1_3:49998200-49998219 Msa0123100:intron 50.0%
!! GGCCTTTTTCACAAGGCTGA+GGG - chr1_3:49998201-49998220 Msa0123100:intron 50.0%
! CGGATGAGGGGTTTGGAGTT+TGG + chr1_3:49994530-49994549 None:intergenic 55.0%
AACAAGGTGCGCACGGATGA+GGG + chr1_3:49994543-49994562 None:intergenic 55.0%
GGGAGAAAGGTTCTCTTCGG+AGG - chr1_3:49994723-49994742 Msa0123100:three_prime_UTR 55.0%
CTACGCTCAGGGGAGCAATT+GGG - chr1_3:49995057-49995076 Msa0123100:intron 55.0%
ATTGCAGGAGACCGTGAGCA+AGG - chr1_3:49996363-49996382 Msa0123100:CDS 55.0%
CAGCTCAACTGCCTTGCTCA+CGG + chr1_3:49996377-49996396 None:intergenic 55.0%
CGGAGCAGGTAAGGACTTGA+TGG - chr1_3:49996810-49996829 Msa0123100:intron 55.0%
CGTTCTGCCAGCAGTTTCCA+AGG + chr1_3:49997106-49997125 None:intergenic 55.0%
GAAACTGCTGGCAGAACGAC+CGG - chr1_3:49997108-49997127 Msa0123100:intron 55.0%
AGGGTAACCGAGATCGTGCT+AGG - chr1_3:49997666-49997685 Msa0123100:intron 55.0%
CCGAGATCGTGCTAGGAACT+TGG - chr1_3:49997673-49997692 Msa0123100:intron 55.0%
TTCCCAGTGGCATGATGCAG+AGG - chr1_3:49997739-49997758 Msa0123100:intron 55.0%
TGGAGATTAGGCTGCGGACA+TGG + chr1_3:49998071-49998090 None:intergenic 55.0%
CAGCAGTGGAGATTAGGCTG+CGG + chr1_3:49998077-49998096 None:intergenic 55.0%
ACAAGGTGCGCACGGATGAG+GGG + chr1_3:49994542-49994561 None:intergenic 60.0%
GAACAAGGTGCGCACGGATG+AGG + chr1_3:49994544-49994563 None:intergenic 60.0%
CCAATTGCTCCCCTGAGCGT+AGG + chr1_3:49995059-49995078 None:intergenic 60.0%
CCTACGCTCAGGGGAGCAAT+TGG - chr1_3:49995056-49995075 Msa0123100:intron 60.0%
GAAAGGCCGGAACACGTTCC+CGG - chr1_3:49996868-49996887 Msa0123100:intron 60.0%
CGCCTCTGCATCATGCCACT+GGG + chr1_3:49997744-49997763 None:intergenic 60.0%
ACGCCTCTGCATCATGCCAC+TGG + chr1_3:49997745-49997764 None:intergenic 60.0%
ATTAGGCTGCGGACATGGCC+AGG + chr1_3:49998066-49998085 None:intergenic 60.0%
GTGCGCACGGATGAGGGGTT+TGG + chr1_3:49994537-49994556 None:intergenic 65.0%
CGCTCAGGGGAGCAATTGGG+AGG - chr1_3:49995060-49995079 Msa0123100:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49994495 49998566 49994495 ID=Msa0123100;Name=Msa0123100
chr1_3 mRNA 49994495 49998566 49994495 ID=Msa0123100-mRNA-1;Parent=Msa0123100;Name=Msa0123100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=315|1|1|1|0.66|0.42|7|235|713
chr1_3 exon 49994495 49994566 49994495 ID=Msa0123100-mRNA-1:exon:15287;Parent=Msa0123100-mRNA-1
chr1_3 exon 49994587 49995069 49994587 ID=Msa0123100-mRNA-1:exon:15286;Parent=Msa0123100-mRNA-1
chr1_3 exon 49995240 49995393 49995240 ID=Msa0123100-mRNA-1:exon:15285;Parent=Msa0123100-mRNA-1
chr1_3 exon 49995570 49996786 49995570 ID=Msa0123100-mRNA-1:exon:15284;Parent=Msa0123100-mRNA-1
chr1_3 exon 49997143 49997395 49997143 ID=Msa0123100-mRNA-1:exon:15283;Parent=Msa0123100-mRNA-1
chr1_3 exon 49997816 49998063 49997816 ID=Msa0123100-mRNA-1:exon:15282;Parent=Msa0123100-mRNA-1
chr1_3 exon 49998302 49998566 49998302 ID=Msa0123100-mRNA-1:exon:15281;Parent=Msa0123100-mRNA-1
chr1_3 five_prime_UTR 49998302 49998566 49998302 ID=Msa0123100-mRNA-1:five_prime_utr;Parent=Msa0123100-mRNA-1
chr1_3 five_prime_UTR 49998014 49998063 49998014 ID=Msa0123100-mRNA-1:five_prime_utr;Parent=Msa0123100-mRNA-1
chr1_3 CDS 49997816 49998013 49997816 ID=Msa0123100-mRNA-1:cds;Parent=Msa0123100-mRNA-1
chr1_3 CDS 49997143 49997395 49997143 ID=Msa0123100-mRNA-1:cds;Parent=Msa0123100-mRNA-1
chr1_3 CDS 49995570 49996786 49995570 ID=Msa0123100-mRNA-1:cds;Parent=Msa0123100-mRNA-1
chr1_3 CDS 49995240 49995393 49995240 ID=Msa0123100-mRNA-1:cds;Parent=Msa0123100-mRNA-1
chr1_3 CDS 49994750 49995069 49994750 ID=Msa0123100-mRNA-1:cds;Parent=Msa0123100-mRNA-1
chr1_3 three_prime_UTR 49994587 49994749 49994587 ID=Msa0123100-mRNA-1:three_prime_utr;Parent=Msa0123100-mRNA-1
chr1_3 three_prime_UTR 49994495 49994566 49994495 ID=Msa0123100-mRNA-1:three_prime_utr;Parent=Msa0123100-mRNA-1
Gene Sequence

>Msa0123100

ATGAAGTTCCTACGCTCAGGGGAGCAATTGGGAGGAACATATGAAACACAACCTTCATCCGAATCTCTTGTCACCAGGGACTTCTTTTCAGGAAGTGATCATTCTTTCCTACCTGGAAAACTTGATCACAAGTTGGACACCGGTAATATAGAAGAAGCAGAATTATCTCTGCGAGAAAGTGGCGTGTTAAACTACGAGGAAGCTAGAGCATTACTAGGAAGATACGAGTATCAAAAAGGAAATTTAGTAGCTGCATTACACGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCCAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTGGGCTTACTGTTTGAAGCACTCTTTCTAAAAGCAAAATCGTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTGCCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTGCTTCCAGAATTGTGGAAGCTTGCTGATTGTCCTCGTGAAGCTACTTTGTCTTACCGGCGAGCACTTCTTCATAAATGGAATCTCGATCCAGGGACTGTAGCAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGTGATGCCTCCTAATCTACGTTCTCAAATGGACGGCTCGTTTGTTCCGGCAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTCAGAAAAGTCTCTCTCTATAGAATTGAATGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCTGTTTCGGGAGACCTATCGAGTTTAGCCAATTATTTGGAAGAATTACTCCCTGGGACTATCCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTAATTACGGAGCAGGTAAGGACTTGATGGCAATGGATCTTTTAAGAAAATTGTTGAGTGATAGAGAAAGGCCGGAACACGTTCCCGGTTTGTTAATGGCTTCTAAAATTTGCTGCGAGAACCCTAGTCTTGCAGAAGAAGGGGTAAGCTTTTCTCAGAGAGCACTTGAGAGCTTGGACGGAAGATGTAAGCAGTTAGAAAATGTTGCAAAATTCTATCTTGGTGTTTCATCATCTGCACACTCAAAATTGGCCATTTCTGATTTCGAGAAATTCAAGAGACAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGCAGAACGACCGGAATGAGAGACCCTTCAGTACTATACCATCTCAGTTTAGAATACGCTGAACAAAGGAAGTTAGACGATGCACTTTATTATGCAAAGTGCGTCATAAAACTGGAAGGTGGTTCCAATGTTAAAGGATGGTTACTGTTGGCACGGATATTATCTGCTCAAAAACAGTTTTTGGAGGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAGGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACTTGGACAGTTAAAGAACGCCATTGAGACGTACACTCAGCTTCTCGCTGTTCTTCAAATTCAGAGCAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGGTAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCAATCAAACCGTATTCTGCTTCTAGATGTCATGCACTCGGCGTAATGTATGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGCGATGCTTTAGACATTGATCCTGGCCATGTCCGCAGCCTAATCTCCACTGCTGAAGTACTTAGACGCTGCAGTAATAAATCAAATCCTGCAGTCAGAACTTTTTTGACGGATGCTCTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTTTCACAAGGCTGAGGGTAAAATATCATCATTGATCGAAGCTACAGAATGTTTTCAGGCAGCACACTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA
Protein sequence

>Msa0123100

MKFLRSGEQLGGTYETQPSSESLVTRDFFSGSDHSFLPGKLDHKLDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLFEALFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHKWNLDPGTVAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPANNIEEAILLLMILLRKVSLYRIEWDPSILDHLSFALSVSGDLSSLANYLEELLPGTIHRSERFHDLALCNYGAGKDLMAMDLLRKLLSDRERPEHVPGLLMASKICCENPSLAEEGVSFSQRALESLDGRCKQLENVAKFYLGVSSSAHSKLAISDFEKFKRQSEALQALETAGRTTGMRDPSVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKQFLEAESIINAALDQTGKWDQGDLLRTKAKIQIALGQLKNAIETYTQLLAVLQIQSKSFGSWKKLYKGNRDRARNLEVEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGVMYEAKGLYKEALKAFRDALDIDPGHVRSLISTAEVLRRCSNKSNPAVRTFLTDALRHDRLNASAWYNLGLFHKAEGKISSLIEATECFQAAHSLEESTPLEPFR*