AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167440 MtrunA17_Chr1g0183391 89.286 420 30 4 1 409 1 416 0.0 658
Msa0167440 MtrunA17_Chr1g0186341 27.302 315 188 9 1 303 1 286 1.27e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167440 AT5G44040.1 40.376 426 193 15 1 386 1 405 2.30e-64 212
Msa0167440 AT1G04030.2 40.265 452 189 22 1 410 1 413 6.68e-58 196
Msa0167440 AT1G04030.1 40.265 452 189 22 1 410 1 413 6.68e-58 196

Find 143 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGGTGAATTCTTATT+TGG 0.154855 1_4:+49354075 Msa0167440:three_prime_UTR
GGTTCACCTTCATCCTTTAA+AGG 0.187029 1_4:+49353976 Msa0167440:CDS
ATTTCCTGGTTCAACTTCTT+TGG 0.209021 1_4:-49353658 None:intergenic
CCTTCACTCCTTCAATTTCA+TGG 0.222289 1_4:+49352486 Msa0167440:exon
CCAGATGAGATGCCGATTAT+AGG 0.229389 1_4:+49353916 Msa0167440:CDS
TTCTTATTTGGATATTTAAC+TGG 0.269617 1_4:+49354087 Msa0167440:three_prime_UTR
CTGTACTTGCTAGTTGTGTT+TGG 0.276793 1_4:-49354003 None:intergenic
TGAAGGAGTATGTAGGGTTT+TGG 0.283066 1_4:-49352820 None:intergenic
TGTTGTGAGTTGCTCCTATC+AGG 0.305506 1_4:-49353778 None:intergenic
CTACTTGTTCTCCTGTATTT+CGG 0.308548 1_4:+49354409 Msa0167440:three_prime_UTR
TAGAGAAGAAGGTGATGAAT+TGG 0.318471 1_4:+49353315 Msa0167440:CDS
TTCTCTTGTAATTATATACT+TGG 0.321333 1_4:+49354529 Msa0167440:three_prime_UTR
TCTGTGACTTCGACTTCAAC+TGG 0.327039 1_4:+49353172 Msa0167440:CDS
GCTGAATCCGGTTGAAAATA+TGG 0.327930 1_4:+49353510 Msa0167440:CDS
TGGAATTCTAATGAGGGTTC+TGG 0.341982 1_4:+49353955 Msa0167440:CDS
CATGAATCAGAGGTTTCATT+TGG 0.343192 1_4:+49353607 Msa0167440:CDS
TGTGTTTGGAATTCCTTTAA+AGG 0.345947 1_4:-49353989 None:intergenic
CCTATAATCGGCATCTCATC+TGG 0.351409 1_4:-49353916 None:intergenic
GTTCAACTTCTTTGGTGTGC+TGG 0.352334 1_4:-49353650 None:intergenic
TAGGAACAGTTGGGTCCTAT+TGG 0.353133 1_4:+49353935 Msa0167440:CDS
TAGCATCAACTGGGATTTCC+TGG 0.358117 1_4:-49353672 None:intergenic
TTCGATAGGCTAGCATCAAC+TGG 0.358795 1_4:-49353682 None:intergenic
CACAAGAAGACGACTTTGAA+TGG 0.373294 1_4:-49353138 None:intergenic
ATACAATGTCCCTTTGGTTC+AGG 0.374830 1_4:+49352791 Msa0167440:CDS
AAGAAGAAGTACTTGATGAT+TGG 0.376669 1_4:+49353248 Msa0167440:CDS
TCGAATTGGTTGGGTTCATC+CGG 0.379742 1_4:+49353700 Msa0167440:CDS
CTAAAATAGGCCTATCTTCA+AGG 0.385904 1_4:-49353822 None:intergenic
TTCTCTAGCCTTGTCTCAAA+TGG 0.386868 1_4:-49354145 None:intergenic
CTTCACTCCTTCAATTTCAT+GGG 0.388010 1_4:+49352487 Msa0167440:exon
CAAATGAAACCTCTGATTCA+TGG 0.388480 1_4:-49353606 None:intergenic
GTCTTCTTCTTCCTATTGAA+AGG 0.390905 1_4:+49352417 Msa0167440:five_prime_UTR
GACATTGAAACCCTTTCAAT+AGG 0.394318 1_4:-49352428 None:intergenic
TACAAACAAGCCTTGTTAAC+AGG 0.398342 1_4:-49353733 None:intergenic
ATCATAGGTATCAGAATTGT+AGG 0.406684 1_4:+49353209 Msa0167440:CDS
CTCTTACAAGGAGACTTCCT+TGG 0.412158 1_4:-49353892 None:intergenic
TTCAGGCAAAACAGACTCAT+AGG 0.416926 1_4:-49353080 None:intergenic
CAATTCTGATACCTATGATT+AGG 0.419539 1_4:-49353205 None:intergenic
GAAGACGACTTTGAATGGTT+TGG 0.422139 1_4:-49353133 None:intergenic
CAGTGATAAGCCTTGAAGAT+AGG 0.427800 1_4:+49353812 Msa0167440:CDS
GACCCAACTGTTCCTATAAT+CGG 0.428480 1_4:-49353928 None:intergenic
AAGTAGCTCGGTTGGTGAGC+AGG 0.429009 1_4:-49354313 None:intergenic
AGAAGAAGTACTTGATGATT+GGG 0.432512 1_4:+49353249 Msa0167440:CDS
GGTCTTACCCTCCTAATCAT+AGG 0.436853 1_4:+49353194 Msa0167440:CDS
TCTTACAAGGAGACTTCCTT+GGG 0.437790 1_4:-49353891 None:intergenic
TGCAATGGTGTGTTTATTTG+TGG 0.437909 1_4:+49354439 Msa0167440:three_prime_UTR
GGAATTCCTTTAAAGGATGA+AGG 0.441727 1_4:-49353982 None:intergenic
GGATATTTAACTGGCTGTGC+AGG 0.443435 1_4:+49354096 Msa0167440:three_prime_UTR
TTGGAGTCAATTTCAATGCT+AGG 0.446266 1_4:+49353461 Msa0167440:CDS
ACCGTTAAAGCACCTAAAAT+AGG 0.447229 1_4:-49353835 None:intergenic
ATTCTAGTGAAGGAGTATGT+AGG 0.448451 1_4:-49352827 None:intergenic
AGAGAAGAAGGTGATGAATT+GGG 0.457368 1_4:+49353316 Msa0167440:CDS
GGCTCAGTGGAAAGTTGTTA+AGG 0.459239 1_4:+49353531 Msa0167440:CDS
GTGTAGGGATAAAACTGAAC+AGG 0.461110 1_4:+49352973 Msa0167440:intron
AACAAGGCTTGTTTGTATGC+TGG 0.461233 1_4:+49353739 Msa0167440:CDS
TCTTCTTCTTCCTATTGAAA+GGG 0.465623 1_4:+49352418 Msa0167440:five_prime_UTR
TGCTAGCCTATCGAATTGGT+TGG 0.473010 1_4:+49353690 Msa0167440:CDS
TTGATGCTAGCCTATCGAAT+TGG 0.473087 1_4:+49353686 Msa0167440:CDS
TGTTCATTCTGTGCTGAATC+CGG 0.473897 1_4:+49353498 Msa0167440:CDS
AATAGAGATGCTGCAGAAGC+TGG 0.478976 1_4:+49354175 Msa0167440:three_prime_UTR
GCAATGGTGTGTTTATTTGT+GGG 0.479671 1_4:+49354440 Msa0167440:three_prime_UTR
ACAGCAATACAATGTCCCTT+TGG 0.481214 1_4:+49352785 Msa0167440:CDS
TCCCTTTCACAAGTAGGAAC+AGG 0.484213 1_4:-49353427 None:intergenic
GAGGATGGAATTAGAGAAGA+AGG 0.485010 1_4:+49353304 Msa0167440:CDS
GTCCTATTGGAATTCTAATG+AGG 0.486281 1_4:+49353948 Msa0167440:CDS
AAAACAACCCATGAAATTGA+AGG 0.487256 1_4:-49352494 None:intergenic
TGCAGGATAAGAAAGTGAAT+TGG 0.487360 1_4:+49354113 Msa0167440:three_prime_UTR
AGGTGGAAAAGAGGAGGCTT+TGG 0.488583 1_4:+49353105 Msa0167440:CDS
GCTAGCCTATCGAATTGGTT+GGG 0.489992 1_4:+49353691 Msa0167440:CDS
GAAAGGGATGTGAAGTCAAT+TGG 0.490728 1_4:+49353442 Msa0167440:CDS
GTGGCATCGGTACTCCTGAT+AGG 0.491698 1_4:+49353764 Msa0167440:CDS
AAAAGTTTGCAATACTGTGC+AGG 0.492069 1_4:+49354226 Msa0167440:three_prime_UTR
AGAGGTTTCATTTGGTGTCA+AGG 0.495087 1_4:+49353615 Msa0167440:CDS
ATGCCGATTATAGGAACAGT+TGG 0.502557 1_4:+49353925 Msa0167440:CDS
ACACTACCCTATTTGAGAAA+AGG 0.502814 1_4:+49354343 Msa0167440:three_prime_UTR
TCCTGTTCCTACTTGTGAAA+GGG 0.502959 1_4:+49353426 Msa0167440:CDS
TTCTGATACCTATGATTAGG+AGG 0.509018 1_4:-49353202 None:intergenic
TGGAGTCAATTTCAATGCTA+GGG 0.511145 1_4:+49353462 Msa0167440:CDS
GCCTGAAGAAGGTGGAAAAG+AGG 0.511476 1_4:+49353096 Msa0167440:CDS
ATTTAATAATAATATTATTG+CGG 0.512075 1_4:+49352375 Msa0167440:five_prime_UTR
CTAAAAGAACACCACGATCA+AGG 0.516379 1_4:+49353554 Msa0167440:CDS
GATAAAACTGAACAGGAACT+TGG 0.520043 1_4:+49352980 Msa0167440:CDS
TTGTATGCTGGTGGTGGCAT+CGG 0.525729 1_4:+49353751 Msa0167440:CDS
TTCTAGTGAAGGAGTATGTA+GGG 0.527537 1_4:-49352826 None:intergenic
TCATGTGTTTACTGAGGAAG+TGG 0.530102 1_4:+49353399 Msa0167440:CDS
TTGCTGTAGGGATAAAATTG+AGG 0.530685 1_4:+49353003 Msa0167440:CDS
GATGATGATGAGGAGGAGGA+TGG 0.532553 1_4:+49353289 Msa0167440:CDS
CTAACAAAATTCTCTTTCTG+AGG 0.534175 1_4:-49353577 None:intergenic
ATCTCATCTGGACTCTTACA+AGG 0.536876 1_4:-49353904 None:intergenic
ACCAACCGAGCTACTTGCTT+AGG 0.537001 1_4:+49354320 Msa0167440:three_prime_UTR
CGAATTGGTTGGGTTCATCC+GGG 0.540275 1_4:+49353701 Msa0167440:CDS
ACCCTCATTAGAATTCCAAT+AGG 0.541146 1_4:-49353950 None:intergenic
GGTGTGGAGTTTGAAGAAGA+TGG 0.542548 1_4:+49353337 Msa0167440:CDS
CTGTGACTTCGACTTCAACT+GGG 0.542775 1_4:+49353173 Msa0167440:CDS
GCACTCATCAAAGTTTATAA+CGG 0.546922 1_4:+49352327 Msa0167440:five_prime_UTR
GTCCTGTTCCTACTTGTGAA+AGG 0.550293 1_4:+49353425 Msa0167440:CDS
ATAATTGCTTACTGTGATTG+TGG 0.550999 1_4:-49352852 None:intergenic
TCCTAAGCAAGTAGCTCGGT+TGG 0.552494 1_4:-49354321 None:intergenic
AGAAGGTGATGAATTGGGTG+TGG 0.556341 1_4:+49353321 Msa0167440:CDS
TGAAACCTCTGATTCATGGT+TGG 0.556892 1_4:-49353602 None:intergenic
AGTAGCTCGGTTGGTGAGCA+GGG 0.558332 1_4:-49354312 None:intergenic
GCTTGTTTGTATGCTGGTGG+TGG 0.559146 1_4:+49353745 Msa0167440:CDS
TTGGAGTGATCCTGAACCAA+AGG 0.559802 1_4:-49352801 None:intergenic
TGGGATACTCGAAGTTGAGA+AGG 0.562184 1_4:+49353362 Msa0167440:CDS
GAGTTTGAAGAAGATGGAAT+GGG 0.564803 1_4:+49353343 Msa0167440:CDS
TTCACATCCCTTTCACAAGT+AGG 0.565405 1_4:-49353433 None:intergenic
GGAGTTTGAAGAAGATGGAA+TGG 0.569181 1_4:+49353342 Msa0167440:CDS
TTACTTGAAGCACGTTGTTG+CGG 0.569342 1_4:-49352555 None:intergenic
CACACCAAAGAAGTTGAACC+AGG 0.569677 1_4:+49353654 Msa0167440:CDS
TCCTATTGGAATTCTAATGA+GGG 0.572382 1_4:+49353949 Msa0167440:CDS
TGGAGTGATCCTGAACCAAA+GGG 0.574081 1_4:-49352800 None:intergenic
GACGACTACACCTGTTAACA+AGG 0.574398 1_4:+49353723 Msa0167440:CDS
TGCCGATTATAGGAACAGTT+GGG 0.574954 1_4:+49353926 Msa0167440:CDS
GGGATACTCGAAGTTGAGAA+GGG 0.575574 1_4:+49353363 Msa0167440:CDS
ACAGGAACTTGGTTGCTGTA+GGG 0.576162 1_4:+49352991 Msa0167440:CDS
TCTTTCTGAGGCCTTGATCG+TGG 0.579965 1_4:-49353565 None:intergenic
CCATGAAATTGAAGGAGTGA+AGG 0.580469 1_4:-49352486 None:intergenic
TCATAGGTATCAGAATTGTA+GGG 0.580930 1_4:+49353210 Msa0167440:CDS
GTTAACAGGTGTAGTCGTCC+CGG 0.582055 1_4:-49353719 None:intergenic
CTATAGAAAACATTGAATAG+AGG 0.583081 1_4:+49354366 Msa0167440:three_prime_UTR
TATTTCGGAAAAGTTTGCAA+TGG 0.586496 1_4:+49354424 Msa0167440:three_prime_UTR
TAGTTCCAACCATGAATCAG+AGG 0.595337 1_4:+49353597 Msa0167440:CDS
CTTCCTTGGGGACGATGTAG+CGG 0.603133 1_4:-49353878 None:intergenic
ATGAACCCAACCAATTCGAT+AGG 0.604616 1_4:-49353696 None:intergenic
GTCTCAGATGAAGAATGAGT+TGG 0.612240 1_4:-49352456 None:intergenic
TTTCCGCTACATCGTCCCCA+AGG 0.613077 1_4:+49353875 Msa0167440:CDS
AACAGGAACTTGGTTGCTGT+AGG 0.616293 1_4:+49352990 Msa0167440:CDS
AAAGGGACATTGTATTGCTG+TGG 0.618091 1_4:-49352783 None:intergenic
TCTTAGTGATGATGATGATG+AGG 0.630441 1_4:+49353279 Msa0167440:CDS
GATAGGAGCAACTCACAACA+AGG 0.632634 1_4:+49353781 Msa0167440:CDS
AAGGCTTGTTTGTATGCTGG+TGG 0.635824 1_4:+49353742 Msa0167440:CDS
CTGTAGGGATAAAATTGAGG+AGG 0.639832 1_4:+49353006 Msa0167440:CDS
TCTGATACCTATGATTAGGA+GGG 0.641103 1_4:-49353201 None:intergenic
GTGAGCAGGGACACCAAATG+AGG 0.643210 1_4:-49354299 None:intergenic
GATTGTGGTGATTCTAGTGA+AGG 0.644878 1_4:-49352837 None:intergenic
TATTGATCATGTGTTTACTG+AGG 0.653342 1_4:+49353393 Msa0167440:CDS
ATGCTACGCCATTTGAGACA+AGG 0.659616 1_4:+49354137 Msa0167440:three_prime_UTR
TCGATAGGCTAGCATCAACT+GGG 0.664173 1_4:-49353681 None:intergenic
TGAAGAAGGTGGAAAAGAGG+AGG 0.666349 1_4:+49353099 Msa0167440:CDS
AGTGTCCTAAGCAAGTAGCT+CGG 0.676997 1_4:-49354325 None:intergenic
GGATACTCGAAGTTGAGAAG+GGG 0.678998 1_4:+49353364 Msa0167440:CDS
CGGTTGAAAATATGGCTCAG+TGG 0.681764 1_4:+49353518 Msa0167440:CDS
CACAACTAGCAAGTACAGAG+AGG 0.701957 1_4:+49354008 Msa0167440:CDS
CTTACAAGGAGACTTCCTTG+GGG 0.775099 1_4:-49353890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTATTTGAAAAAAG+TGG - chr1_4:49352359-49352378 None:intergenic 10.0%
!! AAATAATTATTTGAAAAAAG+TGG - chr1_4:49352359-49352378 None:intergenic 10.0%
!! AAGAAAATAGAAAGTAAAAA+GGG - chr1_4:49352596-49352615 None:intergenic 15.0%
!!! AAAATAGAGCTAAATTTTTT+AGG + chr1_4:49352701-49352720 Msa0167440:intron 15.0%
!! GTAAAAGAAATTAAGATAAA+GGG - chr1_4:49352740-49352759 None:intergenic 15.0%
!! TGTAAAAGAAATTAAGATAA+AGG - chr1_4:49352741-49352760 None:intergenic 15.0%
!! AAGAAAATAGAAAGTAAAAA+GGG - chr1_4:49352596-49352615 None:intergenic 15.0%
!!! AAAATAGAGCTAAATTTTTT+AGG + chr1_4:49352701-49352720 Msa0167440:intron 15.0%
!! GTAAAAGAAATTAAGATAAA+GGG - chr1_4:49352740-49352759 None:intergenic 15.0%
!! TGTAAAAGAAATTAAGATAA+AGG - chr1_4:49352741-49352760 None:intergenic 15.0%
!! AGAAAATAGAAAGTAAAAAG+GGG - chr1_4:49352595-49352614 None:intergenic 20.0%
!! CAAGAAAATAGAAAGTAAAA+AGG - chr1_4:49352597-49352616 None:intergenic 20.0%
!!! AGCTAAATTTTTTAGGTTTT+AGG + chr1_4:49352708-49352727 Msa0167440:intron 20.0%
!!! TTCTTATTTGGATATTTAAC+TGG + chr1_4:49354087-49354106 Msa0167440:three_prime_UTR 20.0%
!! CTTAAAAACTAACATAACTT+TGG - chr1_4:49354273-49354292 None:intergenic 20.0%
!!! CAAAGTTATGTTAGTTTTTA+AGG + chr1_4:49354271-49354290 Msa0167440:three_prime_UTR 20.0%
!! TTCTCTTGTAATTATATACT+TGG + chr1_4:49354529-49354548 Msa0167440:three_prime_UTR 20.0%
!! AGAAAATAGAAAGTAAAAAG+GGG - chr1_4:49352595-49352614 None:intergenic 20.0%
!! CAAGAAAATAGAAAGTAAAA+AGG - chr1_4:49352597-49352616 None:intergenic 20.0%
!!! AGCTAAATTTTTTAGGTTTT+AGG + chr1_4:49352708-49352727 Msa0167440:intron 20.0%
!!! TTCTTATTTGGATATTTAAC+TGG + chr1_4:49354087-49354106 Msa0167440:three_prime_UTR 20.0%
!! CTTAAAAACTAACATAACTT+TGG - chr1_4:49354273-49354292 None:intergenic 20.0%
!!! CAAAGTTATGTTAGTTTTTA+AGG + chr1_4:49354271-49354290 Msa0167440:three_prime_UTR 20.0%
!! TTCTCTTGTAATTATATACT+TGG + chr1_4:49354529-49354548 Msa0167440:three_prime_UTR 20.0%
! AAAATAGAAAGTAAAAAGGG+GGG - chr1_4:49352593-49352612 None:intergenic 25.0%
! GAAAATAGAAAGTAAAAAGG+GGG - chr1_4:49352594-49352613 None:intergenic 25.0%
! TTGGAAGTAAACAAAGAAAA+GGG - chr1_4:49352666-49352685 None:intergenic 25.0%
! ATTGGAAGTAAACAAAGAAA+AGG - chr1_4:49352667-49352686 None:intergenic 25.0%
!!! TTGTTTTTTTGTTGTTGTGT+AGG + chr1_4:49352957-49352976 Msa0167440:intron 25.0%
!!! TGTTTTTTTGTTGTTGTGTA+GGG + chr1_4:49352958-49352977 Msa0167440:intron 25.0%
!!! ATTTTCACTCATTAGTTTGA+TGG + chr1_4:49354060-49354079 Msa0167440:three_prime_UTR 25.0%
!!! TTTGATGGTGAATTCTTATT+TGG + chr1_4:49354075-49354094 Msa0167440:three_prime_UTR 25.0%
!!! AAACTTTTCTAAAATGCATG+AGG - chr1_4:49354214-49354233 None:intergenic 25.0%
! CTATAGAAAACATTGAATAG+AGG + chr1_4:49354366-49354385 Msa0167440:three_prime_UTR 25.0%
! AAAATAGAAAGTAAAAAGGG+GGG - chr1_4:49352593-49352612 None:intergenic 25.0%
! GAAAATAGAAAGTAAAAAGG+GGG - chr1_4:49352594-49352613 None:intergenic 25.0%
! TTGGAAGTAAACAAAGAAAA+GGG - chr1_4:49352666-49352685 None:intergenic 25.0%
! ATTGGAAGTAAACAAAGAAA+AGG - chr1_4:49352667-49352686 None:intergenic 25.0%
!!! TTGTTTTTTTGTTGTTGTGT+AGG + chr1_4:49352957-49352976 Msa0167440:intron 25.0%
!!! TGTTTTTTTGTTGTTGTGTA+GGG + chr1_4:49352958-49352977 Msa0167440:intron 25.0%
!!! ATTTTCACTCATTAGTTTGA+TGG + chr1_4:49354060-49354079 Msa0167440:three_prime_UTR 25.0%
!!! TTTGATGGTGAATTCTTATT+TGG + chr1_4:49354075-49354094 Msa0167440:three_prime_UTR 25.0%
!!! AAACTTTTCTAAAATGCATG+AGG - chr1_4:49354214-49354233 None:intergenic 25.0%
! CTATAGAAAACATTGAATAG+AGG + chr1_4:49354366-49354385 Msa0167440:three_prime_UTR 25.0%
GCACTCATCAAAGTTTATAA+CGG + chr1_4:49352327-49352346 Msa0167440:five_prime_UTR 30.0%
TCTTCTTCTTCCTATTGAAA+GGG + chr1_4:49352418-49352437 Msa0167440:five_prime_UTR 30.0%
AAAACAACCCATGAAATTGA+AGG - chr1_4:49352497-49352516 None:intergenic 30.0%
!! AATTTCATGGGTTGTTTTCT+TGG + chr1_4:49352499-49352518 Msa0167440:exon 30.0%
AAATAGAAAGTAAAAAGGGG+GGG - chr1_4:49352592-49352611 None:intergenic 30.0%
ATAATTGCTTACTGTGATTG+TGG - chr1_4:49352855-49352874 None:intergenic 30.0%
AAGCTTCCAAAAATAGAAAG+TGG - chr1_4:49352895-49352914 None:intergenic 30.0%
CAATTCTGATACCTATGATT+AGG - chr1_4:49353208-49353227 None:intergenic 30.0%
ATCATAGGTATCAGAATTGT+AGG + chr1_4:49353209-49353228 Msa0167440:CDS 30.0%
TCATAGGTATCAGAATTGTA+GGG + chr1_4:49353210-49353229 Msa0167440:CDS 30.0%
!! AAGAAGAAGTACTTGATGAT+TGG + chr1_4:49353248-49353267 Msa0167440:CDS 30.0%
!! AGAAGAAGTACTTGATGATT+GGG + chr1_4:49353249-49353268 Msa0167440:CDS 30.0%
TATTGATCATGTGTTTACTG+AGG + chr1_4:49353393-49353412 Msa0167440:CDS 30.0%
CTAACAAAATTCTCTTTCTG+AGG - chr1_4:49353580-49353599 None:intergenic 30.0%
TCCTATTGGAATTCTAATGA+GGG + chr1_4:49353949-49353968 Msa0167440:CDS 30.0%
! TGTGTTTGGAATTCCTTTAA+AGG - chr1_4:49353992-49354011 None:intergenic 30.0%
! AAGACGAAGTGAATTTTTGT+AGG + chr1_4:49354033-49354052 Msa0167440:exon 30.0%
!!! TTTTAAGGTTTGACCTCATT+TGG + chr1_4:49354286-49354305 Msa0167440:three_prime_UTR 30.0%
! CTATAGCCTTTTCTCAAATA+GGG - chr1_4:49354352-49354371 None:intergenic 30.0%
! TCTATAGCCTTTTCTCAAAT+AGG - chr1_4:49354353-49354372 None:intergenic 30.0%
TATTTCGGAAAAGTTTGCAA+TGG + chr1_4:49354424-49354443 Msa0167440:three_prime_UTR 30.0%
GCACTCATCAAAGTTTATAA+CGG + chr1_4:49352327-49352346 Msa0167440:five_prime_UTR 30.0%
TCTTCTTCTTCCTATTGAAA+GGG + chr1_4:49352418-49352437 Msa0167440:five_prime_UTR 30.0%
AAAACAACCCATGAAATTGA+AGG - chr1_4:49352497-49352516 None:intergenic 30.0%
!! AATTTCATGGGTTGTTTTCT+TGG + chr1_4:49352499-49352518 Msa0167440:exon 30.0%
AAATAGAAAGTAAAAAGGGG+GGG - chr1_4:49352592-49352611 None:intergenic 30.0%
ATAATTGCTTACTGTGATTG+TGG - chr1_4:49352855-49352874 None:intergenic 30.0%
AAGCTTCCAAAAATAGAAAG+TGG - chr1_4:49352895-49352914 None:intergenic 30.0%
CAATTCTGATACCTATGATT+AGG - chr1_4:49353208-49353227 None:intergenic 30.0%
ATCATAGGTATCAGAATTGT+AGG + chr1_4:49353209-49353228 Msa0167440:CDS 30.0%
TCATAGGTATCAGAATTGTA+GGG + chr1_4:49353210-49353229 Msa0167440:CDS 30.0%
!! AAGAAGAAGTACTTGATGAT+TGG + chr1_4:49353248-49353267 Msa0167440:CDS 30.0%
!! AGAAGAAGTACTTGATGATT+GGG + chr1_4:49353249-49353268 Msa0167440:CDS 30.0%
TATTGATCATGTGTTTACTG+AGG + chr1_4:49353393-49353412 Msa0167440:CDS 30.0%
CTAACAAAATTCTCTTTCTG+AGG - chr1_4:49353580-49353599 None:intergenic 30.0%
TCCTATTGGAATTCTAATGA+GGG + chr1_4:49353949-49353968 Msa0167440:CDS 30.0%
! TGTGTTTGGAATTCCTTTAA+AGG - chr1_4:49353992-49354011 None:intergenic 30.0%
! AAGACGAAGTGAATTTTTGT+AGG + chr1_4:49354033-49354052 Msa0167440:exon 30.0%
!!! TTTTAAGGTTTGACCTCATT+TGG + chr1_4:49354286-49354305 Msa0167440:three_prime_UTR 30.0%
! CTATAGCCTTTTCTCAAATA+GGG - chr1_4:49354352-49354371 None:intergenic 30.0%
! TCTATAGCCTTTTCTCAAAT+AGG - chr1_4:49354353-49354372 None:intergenic 30.0%
TATTTCGGAAAAGTTTGCAA+TGG + chr1_4:49354424-49354443 Msa0167440:three_prime_UTR 30.0%
GTCTTCTTCTTCCTATTGAA+AGG + chr1_4:49352417-49352436 Msa0167440:five_prime_UTR 35.0%
GACATTGAAACCCTTTCAAT+AGG - chr1_4:49352431-49352450 None:intergenic 35.0%
CTTCACTCCTTCAATTTCAT+GGG + chr1_4:49352487-49352506 Msa0167440:exon 35.0%
!!! TTGTTGCGGTTGTGTTTTTT+GGG - chr1_4:49352544-49352563 None:intergenic 35.0%
! TTCTAGTGAAGGAGTATGTA+GGG - chr1_4:49352829-49352848 None:intergenic 35.0%
! ATTCTAGTGAAGGAGTATGT+AGG - chr1_4:49352830-49352849 None:intergenic 35.0%
! CACTCACCACTTTCTATTTT+TGG + chr1_4:49352886-49352905 Msa0167440:intron 35.0%
GATAAAACTGAACAGGAACT+TGG + chr1_4:49352980-49352999 Msa0167440:CDS 35.0%
TTGCTGTAGGGATAAAATTG+AGG + chr1_4:49353003-49353022 Msa0167440:CDS 35.0%
! AGACTCATAGGTTTTCACAT+TGG - chr1_4:49353071-49353090 None:intergenic 35.0%
TCTGATACCTATGATTAGGA+GGG - chr1_4:49353204-49353223 None:intergenic 35.0%
TTCTGATACCTATGATTAGG+AGG - chr1_4:49353205-49353224 None:intergenic 35.0%
! TCTTAGTGATGATGATGATG+AGG + chr1_4:49353279-49353298 Msa0167440:CDS 35.0%
TAGAGAAGAAGGTGATGAAT+TGG + chr1_4:49353315-49353334 Msa0167440:CDS 35.0%
AGAGAAGAAGGTGATGAATT+GGG + chr1_4:49353316-49353335 Msa0167440:CDS 35.0%
GAGTTTGAAGAAGATGGAAT+GGG + chr1_4:49353343-49353362 Msa0167440:CDS 35.0%
TTGGAGTCAATTTCAATGCT+AGG + chr1_4:49353461-49353480 Msa0167440:CDS 35.0%
TGGAGTCAATTTCAATGCTA+GGG + chr1_4:49353462-49353481 Msa0167440:CDS 35.0%
CAAATGAAACCTCTGATTCA+TGG - chr1_4:49353609-49353628 None:intergenic 35.0%
CATGAATCAGAGGTTTCATT+TGG + chr1_4:49353607-49353626 Msa0167440:CDS 35.0%
ATTTCCTGGTTCAACTTCTT+TGG - chr1_4:49353661-49353680 None:intergenic 35.0%
!! TACAAACAAGCCTTGTTAAC+AGG - chr1_4:49353736-49353755 None:intergenic 35.0%
CTAAAATAGGCCTATCTTCA+AGG - chr1_4:49353825-49353844 None:intergenic 35.0%
! CTTGAAGATAGGCCTATTTT+AGG + chr1_4:49353823-49353842 Msa0167440:CDS 35.0%
!! GCCTATTTTAGGTGCTTTAA+CGG + chr1_4:49353834-49353853 Msa0167440:CDS 35.0%
! ACCGTTAAAGCACCTAAAAT+AGG - chr1_4:49353838-49353857 None:intergenic 35.0%
!! TATTTTAGGTGCTTTAACGG+TGG + chr1_4:49353837-49353856 Msa0167440:CDS 35.0%
GTCCTATTGGAATTCTAATG+AGG + chr1_4:49353948-49353967 Msa0167440:CDS 35.0%
ACCCTCATTAGAATTCCAAT+AGG - chr1_4:49353953-49353972 None:intergenic 35.0%
! GGAATTCCTTTAAAGGATGA+AGG - chr1_4:49353985-49354004 None:intergenic 35.0%
TGCAGGATAAGAAAGTGAAT+TGG + chr1_4:49354113-49354132 Msa0167440:three_prime_UTR 35.0%
AAAAGTTTGCAATACTGTGC+AGG + chr1_4:49354226-49354245 Msa0167440:three_prime_UTR 35.0%
ACACTACCCTATTTGAGAAA+AGG + chr1_4:49354343-49354362 Msa0167440:three_prime_UTR 35.0%
CTACTTGTTCTCCTGTATTT+CGG + chr1_4:49354409-49354428 Msa0167440:three_prime_UTR 35.0%
! TGCAAACTTTTCCGAAATAC+AGG - chr1_4:49354423-49354442 None:intergenic 35.0%
TGCAATGGTGTGTTTATTTG+TGG + chr1_4:49354439-49354458 Msa0167440:three_prime_UTR 35.0%
GCAATGGTGTGTTTATTTGT+GGG + chr1_4:49354440-49354459 Msa0167440:three_prime_UTR 35.0%
GTCTTCTTCTTCCTATTGAA+AGG + chr1_4:49352417-49352436 Msa0167440:five_prime_UTR 35.0%
GACATTGAAACCCTTTCAAT+AGG - chr1_4:49352431-49352450 None:intergenic 35.0%
CTTCACTCCTTCAATTTCAT+GGG + chr1_4:49352487-49352506 Msa0167440:exon 35.0%
!!! TTGTTGCGGTTGTGTTTTTT+GGG - chr1_4:49352544-49352563 None:intergenic 35.0%
! TTCTAGTGAAGGAGTATGTA+GGG - chr1_4:49352829-49352848 None:intergenic 35.0%
! ATTCTAGTGAAGGAGTATGT+AGG - chr1_4:49352830-49352849 None:intergenic 35.0%
! CACTCACCACTTTCTATTTT+TGG + chr1_4:49352886-49352905 Msa0167440:intron 35.0%
GATAAAACTGAACAGGAACT+TGG + chr1_4:49352980-49352999 Msa0167440:CDS 35.0%
TTGCTGTAGGGATAAAATTG+AGG + chr1_4:49353003-49353022 Msa0167440:CDS 35.0%
! AGACTCATAGGTTTTCACAT+TGG - chr1_4:49353071-49353090 None:intergenic 35.0%
TCTGATACCTATGATTAGGA+GGG - chr1_4:49353204-49353223 None:intergenic 35.0%
TTCTGATACCTATGATTAGG+AGG - chr1_4:49353205-49353224 None:intergenic 35.0%
! TCTTAGTGATGATGATGATG+AGG + chr1_4:49353279-49353298 Msa0167440:CDS 35.0%
TAGAGAAGAAGGTGATGAAT+TGG + chr1_4:49353315-49353334 Msa0167440:CDS 35.0%
AGAGAAGAAGGTGATGAATT+GGG + chr1_4:49353316-49353335 Msa0167440:CDS 35.0%
GAGTTTGAAGAAGATGGAAT+GGG + chr1_4:49353343-49353362 Msa0167440:CDS 35.0%
TTGGAGTCAATTTCAATGCT+AGG + chr1_4:49353461-49353480 Msa0167440:CDS 35.0%
TGGAGTCAATTTCAATGCTA+GGG + chr1_4:49353462-49353481 Msa0167440:CDS 35.0%
CAAATGAAACCTCTGATTCA+TGG - chr1_4:49353609-49353628 None:intergenic 35.0%
CATGAATCAGAGGTTTCATT+TGG + chr1_4:49353607-49353626 Msa0167440:CDS 35.0%
ATTTCCTGGTTCAACTTCTT+TGG - chr1_4:49353661-49353680 None:intergenic 35.0%
!! TACAAACAAGCCTTGTTAAC+AGG - chr1_4:49353736-49353755 None:intergenic 35.0%
CTAAAATAGGCCTATCTTCA+AGG - chr1_4:49353825-49353844 None:intergenic 35.0%
! CTTGAAGATAGGCCTATTTT+AGG + chr1_4:49353823-49353842 Msa0167440:CDS 35.0%
!! GCCTATTTTAGGTGCTTTAA+CGG + chr1_4:49353834-49353853 Msa0167440:CDS 35.0%
! ACCGTTAAAGCACCTAAAAT+AGG - chr1_4:49353838-49353857 None:intergenic 35.0%
!! TATTTTAGGTGCTTTAACGG+TGG + chr1_4:49353837-49353856 Msa0167440:CDS 35.0%
GTCCTATTGGAATTCTAATG+AGG + chr1_4:49353948-49353967 Msa0167440:CDS 35.0%
ACCCTCATTAGAATTCCAAT+AGG - chr1_4:49353953-49353972 None:intergenic 35.0%
! GGAATTCCTTTAAAGGATGA+AGG - chr1_4:49353985-49354004 None:intergenic 35.0%
TGCAGGATAAGAAAGTGAAT+TGG + chr1_4:49354113-49354132 Msa0167440:three_prime_UTR 35.0%
AAAAGTTTGCAATACTGTGC+AGG + chr1_4:49354226-49354245 Msa0167440:three_prime_UTR 35.0%
ACACTACCCTATTTGAGAAA+AGG + chr1_4:49354343-49354362 Msa0167440:three_prime_UTR 35.0%
CTACTTGTTCTCCTGTATTT+CGG + chr1_4:49354409-49354428 Msa0167440:three_prime_UTR 35.0%
! TGCAAACTTTTCCGAAATAC+AGG - chr1_4:49354423-49354442 None:intergenic 35.0%
TGCAATGGTGTGTTTATTTG+TGG + chr1_4:49354439-49354458 Msa0167440:three_prime_UTR 35.0%
GCAATGGTGTGTTTATTTGT+GGG + chr1_4:49354440-49354459 Msa0167440:three_prime_UTR 35.0%
GTCTCAGATGAAGAATGAGT+TGG - chr1_4:49352459-49352478 None:intergenic 40.0%
CCATGAAATTGAAGGAGTGA+AGG - chr1_4:49352489-49352508 None:intergenic 40.0%
CCTTCACTCCTTCAATTTCA+TGG + chr1_4:49352486-49352505 Msa0167440:exon 40.0%
!! GGTTGTTTTCTTGGTTGCTT+TGG + chr1_4:49352508-49352527 Msa0167440:CDS 40.0%
!!! GTTGTGTTTTTTGGGTTTGG+AGG - chr1_4:49352536-49352555 None:intergenic 40.0%
!!! GTTGTTGCGGTTGTGTTTTT+TGG - chr1_4:49352545-49352564 None:intergenic 40.0%
TTACTTGAAGCACGTTGTTG+CGG - chr1_4:49352558-49352577 None:intergenic 40.0%
!! TTTTGCTGCTGAGAAAGCAT+TGG - chr1_4:49352685-49352704 None:intergenic 40.0%
AAAGGGACATTGTATTGCTG+TGG - chr1_4:49352786-49352805 None:intergenic 40.0%
ACAGCAATACAATGTCCCTT+TGG + chr1_4:49352785-49352804 Msa0167440:CDS 40.0%
! ATACAATGTCCCTTTGGTTC+AGG + chr1_4:49352791-49352810 Msa0167440:CDS 40.0%
!! TGAAGGAGTATGTAGGGTTT+TGG - chr1_4:49352823-49352842 None:intergenic 40.0%
GATTGTGGTGATTCTAGTGA+AGG - chr1_4:49352840-49352859 None:intergenic 40.0%
GTGTAGGGATAAAACTGAAC+AGG + chr1_4:49352973-49352992 Msa0167440:intron 40.0%
CTGTAGGGATAAAATTGAGG+AGG + chr1_4:49353006-49353025 Msa0167440:CDS 40.0%
TTCAGGCAAAACAGACTCAT+AGG - chr1_4:49353083-49353102 None:intergenic 40.0%
GAAGACGACTTTGAATGGTT+TGG - chr1_4:49353136-49353155 None:intergenic 40.0%
CACAAGAAGACGACTTTGAA+TGG - chr1_4:49353141-49353160 None:intergenic 40.0%
! TAGTGATGATGATGATGAGG+AGG + chr1_4:49353282-49353301 Msa0167440:CDS 40.0%
GAGGATGGAATTAGAGAAGA+AGG + chr1_4:49353304-49353323 Msa0167440:CDS 40.0%
GGAGTTTGAAGAAGATGGAA+TGG + chr1_4:49353342-49353361 Msa0167440:CDS 40.0%
TCATGTGTTTACTGAGGAAG+TGG + chr1_4:49353399-49353418 Msa0167440:CDS 40.0%
TCCTGTTCCTACTTGTGAAA+GGG + chr1_4:49353426-49353445 Msa0167440:CDS 40.0%
TTCACATCCCTTTCACAAGT+AGG - chr1_4:49353436-49353455 None:intergenic 40.0%
GAAAGGGATGTGAAGTCAAT+TGG + chr1_4:49353442-49353461 Msa0167440:CDS 40.0%
TGTTCATTCTGTGCTGAATC+CGG + chr1_4:49353498-49353517 Msa0167440:CDS 40.0%
GCTGAATCCGGTTGAAAATA+TGG + chr1_4:49353510-49353529 Msa0167440:CDS 40.0%
! CACTGAGCCATATTTTCAAC+CGG - chr1_4:49353520-49353539 None:intergenic 40.0%
CTAAAAGAACACCACGATCA+AGG + chr1_4:49353554-49353573 Msa0167440:CDS 40.0%
TAGTTCCAACCATGAATCAG+AGG + chr1_4:49353597-49353616 Msa0167440:CDS 40.0%
TGAAACCTCTGATTCATGGT+TGG - chr1_4:49353605-49353624 None:intergenic 40.0%
!! AGAGGTTTCATTTGGTGTCA+AGG + chr1_4:49353615-49353634 Msa0167440:CDS 40.0%
! TTGATGCTAGCCTATCGAAT+TGG + chr1_4:49353686-49353705 Msa0167440:CDS 40.0%
ATGAACCCAACCAATTCGAT+AGG - chr1_4:49353699-49353718 None:intergenic 40.0%
! AACAAGGCTTGTTTGTATGC+TGG + chr1_4:49353739-49353758 Msa0167440:CDS 40.0%
CAGTGATAAGCCTTGAAGAT+AGG + chr1_4:49353812-49353831 Msa0167440:CDS 40.0%
TCTTACAAGGAGACTTCCTT+GGG - chr1_4:49353894-49353913 None:intergenic 40.0%
ATCTCATCTGGACTCTTACA+AGG - chr1_4:49353907-49353926 None:intergenic 40.0%
! ATGCCGATTATAGGAACAGT+TGG + chr1_4:49353925-49353944 Msa0167440:CDS 40.0%
! TGCCGATTATAGGAACAGTT+GGG + chr1_4:49353926-49353945 Msa0167440:CDS 40.0%
GACCCAACTGTTCCTATAAT+CGG - chr1_4:49353931-49353950 None:intergenic 40.0%
TGGAATTCTAATGAGGGTTC+TGG + chr1_4:49353955-49353974 Msa0167440:CDS 40.0%
GGTTCACCTTCATCCTTTAA+AGG + chr1_4:49353976-49353995 Msa0167440:CDS 40.0%
! CTGTACTTGCTAGTTGTGTT+TGG - chr1_4:49354006-49354025 None:intergenic 40.0%
!! TTCTCTAGCCTTGTCTCAAA+TGG - chr1_4:49354148-49354167 None:intergenic 40.0%
GTCTCAGATGAAGAATGAGT+TGG - chr1_4:49352459-49352478 None:intergenic 40.0%
CCATGAAATTGAAGGAGTGA+AGG - chr1_4:49352489-49352508 None:intergenic 40.0%
CCTTCACTCCTTCAATTTCA+TGG + chr1_4:49352486-49352505 Msa0167440:exon 40.0%
!! GGTTGTTTTCTTGGTTGCTT+TGG + chr1_4:49352508-49352527 Msa0167440:CDS 40.0%
!!! GTTGTGTTTTTTGGGTTTGG+AGG - chr1_4:49352536-49352555 None:intergenic 40.0%
!!! GTTGTTGCGGTTGTGTTTTT+TGG - chr1_4:49352545-49352564 None:intergenic 40.0%
TTACTTGAAGCACGTTGTTG+CGG - chr1_4:49352558-49352577 None:intergenic 40.0%
!! TTTTGCTGCTGAGAAAGCAT+TGG - chr1_4:49352685-49352704 None:intergenic 40.0%
AAAGGGACATTGTATTGCTG+TGG - chr1_4:49352786-49352805 None:intergenic 40.0%
ACAGCAATACAATGTCCCTT+TGG + chr1_4:49352785-49352804 Msa0167440:CDS 40.0%
! ATACAATGTCCCTTTGGTTC+AGG + chr1_4:49352791-49352810 Msa0167440:CDS 40.0%
!! TGAAGGAGTATGTAGGGTTT+TGG - chr1_4:49352823-49352842 None:intergenic 40.0%
GATTGTGGTGATTCTAGTGA+AGG - chr1_4:49352840-49352859 None:intergenic 40.0%
GTGTAGGGATAAAACTGAAC+AGG + chr1_4:49352973-49352992 Msa0167440:intron 40.0%
CTGTAGGGATAAAATTGAGG+AGG + chr1_4:49353006-49353025 Msa0167440:CDS 40.0%
TTCAGGCAAAACAGACTCAT+AGG - chr1_4:49353083-49353102 None:intergenic 40.0%
GAAGACGACTTTGAATGGTT+TGG - chr1_4:49353136-49353155 None:intergenic 40.0%
CACAAGAAGACGACTTTGAA+TGG - chr1_4:49353141-49353160 None:intergenic 40.0%
! TAGTGATGATGATGATGAGG+AGG + chr1_4:49353282-49353301 Msa0167440:CDS 40.0%
GAGGATGGAATTAGAGAAGA+AGG + chr1_4:49353304-49353323 Msa0167440:CDS 40.0%
GGAGTTTGAAGAAGATGGAA+TGG + chr1_4:49353342-49353361 Msa0167440:CDS 40.0%
TCATGTGTTTACTGAGGAAG+TGG + chr1_4:49353399-49353418 Msa0167440:CDS 40.0%
TCCTGTTCCTACTTGTGAAA+GGG + chr1_4:49353426-49353445 Msa0167440:CDS 40.0%
TTCACATCCCTTTCACAAGT+AGG - chr1_4:49353436-49353455 None:intergenic 40.0%
GAAAGGGATGTGAAGTCAAT+TGG + chr1_4:49353442-49353461 Msa0167440:CDS 40.0%
TGTTCATTCTGTGCTGAATC+CGG + chr1_4:49353498-49353517 Msa0167440:CDS 40.0%
GCTGAATCCGGTTGAAAATA+TGG + chr1_4:49353510-49353529 Msa0167440:CDS 40.0%
! CACTGAGCCATATTTTCAAC+CGG - chr1_4:49353520-49353539 None:intergenic 40.0%
CTAAAAGAACACCACGATCA+AGG + chr1_4:49353554-49353573 Msa0167440:CDS 40.0%
TAGTTCCAACCATGAATCAG+AGG + chr1_4:49353597-49353616 Msa0167440:CDS 40.0%
TGAAACCTCTGATTCATGGT+TGG - chr1_4:49353605-49353624 None:intergenic 40.0%
!! AGAGGTTTCATTTGGTGTCA+AGG + chr1_4:49353615-49353634 Msa0167440:CDS 40.0%
! TTGATGCTAGCCTATCGAAT+TGG + chr1_4:49353686-49353705 Msa0167440:CDS 40.0%
ATGAACCCAACCAATTCGAT+AGG - chr1_4:49353699-49353718 None:intergenic 40.0%
! AACAAGGCTTGTTTGTATGC+TGG + chr1_4:49353739-49353758 Msa0167440:CDS 40.0%
CAGTGATAAGCCTTGAAGAT+AGG + chr1_4:49353812-49353831 Msa0167440:CDS 40.0%
TCTTACAAGGAGACTTCCTT+GGG - chr1_4:49353894-49353913 None:intergenic 40.0%
ATCTCATCTGGACTCTTACA+AGG - chr1_4:49353907-49353926 None:intergenic 40.0%
! ATGCCGATTATAGGAACAGT+TGG + chr1_4:49353925-49353944 Msa0167440:CDS 40.0%
! TGCCGATTATAGGAACAGTT+GGG + chr1_4:49353926-49353945 Msa0167440:CDS 40.0%
GACCCAACTGTTCCTATAAT+CGG - chr1_4:49353931-49353950 None:intergenic 40.0%
TGGAATTCTAATGAGGGTTC+TGG + chr1_4:49353955-49353974 Msa0167440:CDS 40.0%
GGTTCACCTTCATCCTTTAA+AGG + chr1_4:49353976-49353995 Msa0167440:CDS 40.0%
! CTGTACTTGCTAGTTGTGTT+TGG - chr1_4:49354006-49354025 None:intergenic 40.0%
!! TTCTCTAGCCTTGTCTCAAA+TGG - chr1_4:49354148-49354167 None:intergenic 40.0%
!!! GCGGTTGTGTTTTTTGGGTT+TGG - chr1_4:49352539-49352558 None:intergenic 45.0%
TGGAGTGATCCTGAACCAAA+GGG - chr1_4:49352803-49352822 None:intergenic 45.0%
TTGGAGTGATCCTGAACCAA+AGG - chr1_4:49352804-49352823 None:intergenic 45.0%
AACAGGAACTTGGTTGCTGT+AGG + chr1_4:49352990-49353009 Msa0167440:CDS 45.0%
ACAGGAACTTGGTTGCTGTA+GGG + chr1_4:49352991-49353010 Msa0167440:CDS 45.0%
! GAGTCTGTTTTGCCTGAAGA+AGG + chr1_4:49353085-49353104 Msa0167440:CDS 45.0%
! TCTGTTTTGCCTGAAGAAGG+TGG + chr1_4:49353088-49353107 Msa0167440:CDS 45.0%
! TCCTCTTTTCCACCTTCTTC+AGG - chr1_4:49353100-49353119 None:intergenic 45.0%
TGAAGAAGGTGGAAAAGAGG+AGG + chr1_4:49353099-49353118 Msa0167440:CDS 45.0%
TCTGTGACTTCGACTTCAAC+TGG + chr1_4:49353172-49353191 Msa0167440:CDS 45.0%
CTGTGACTTCGACTTCAACT+GGG + chr1_4:49353173-49353192 Msa0167440:CDS 45.0%
GGTCTTACCCTCCTAATCAT+AGG + chr1_4:49353194-49353213 Msa0167440:CDS 45.0%
! TGATGATGATGATGAGGAGG+AGG + chr1_4:49353285-49353304 Msa0167440:CDS 45.0%
AGAAGGTGATGAATTGGGTG+TGG + chr1_4:49353321-49353340 Msa0167440:CDS 45.0%
GGTGTGGAGTTTGAAGAAGA+TGG + chr1_4:49353337-49353356 Msa0167440:CDS 45.0%
TGGGATACTCGAAGTTGAGA+AGG + chr1_4:49353362-49353381 Msa0167440:CDS 45.0%
GGGATACTCGAAGTTGAGAA+GGG + chr1_4:49353363-49353382 Msa0167440:CDS 45.0%
GGATACTCGAAGTTGAGAAG+GGG + chr1_4:49353364-49353383 Msa0167440:CDS 45.0%
GTCCTGTTCCTACTTGTGAA+AGG + chr1_4:49353425-49353444 Msa0167440:CDS 45.0%
TCCCTTTCACAAGTAGGAAC+AGG - chr1_4:49353430-49353449 None:intergenic 45.0%
CGGTTGAAAATATGGCTCAG+TGG + chr1_4:49353518-49353537 Msa0167440:CDS 45.0%
GGCTCAGTGGAAAGTTGTTA+AGG + chr1_4:49353531-49353550 Msa0167440:CDS 45.0%
! GTTCAACTTCTTTGGTGTGC+TGG - chr1_4:49353653-49353672 None:intergenic 45.0%
CACACCAAAGAAGTTGAACC+AGG + chr1_4:49353654-49353673 Msa0167440:CDS 45.0%
TAGCATCAACTGGGATTTCC+TGG - chr1_4:49353675-49353694 None:intergenic 45.0%
TCGATAGGCTAGCATCAACT+GGG - chr1_4:49353684-49353703 None:intergenic 45.0%
TTCGATAGGCTAGCATCAAC+TGG - chr1_4:49353685-49353704 None:intergenic 45.0%
! TGCTAGCCTATCGAATTGGT+TGG + chr1_4:49353690-49353709 Msa0167440:CDS 45.0%
! GCTAGCCTATCGAATTGGTT+GGG + chr1_4:49353691-49353710 Msa0167440:CDS 45.0%
TCGAATTGGTTGGGTTCATC+CGG + chr1_4:49353700-49353719 Msa0167440:CDS 45.0%
GACGACTACACCTGTTAACA+AGG + chr1_4:49353723-49353742 Msa0167440:CDS 45.0%
! AAGGCTTGTTTGTATGCTGG+TGG + chr1_4:49353742-49353761 Msa0167440:CDS 45.0%
TGTTGTGAGTTGCTCCTATC+AGG - chr1_4:49353781-49353800 None:intergenic 45.0%
GATAGGAGCAACTCACAACA+AGG + chr1_4:49353781-49353800 Msa0167440:CDS 45.0%
CTTACAAGGAGACTTCCTTG+GGG - chr1_4:49353893-49353912 None:intergenic 45.0%
CTCTTACAAGGAGACTTCCT+TGG - chr1_4:49353895-49353914 None:intergenic 45.0%
CCTATAATCGGCATCTCATC+TGG - chr1_4:49353919-49353938 None:intergenic 45.0%
! CCAGATGAGATGCCGATTAT+AGG + chr1_4:49353916-49353935 Msa0167440:CDS 45.0%
TAGGAACAGTTGGGTCCTAT+TGG + chr1_4:49353935-49353954 Msa0167440:CDS 45.0%
CACAACTAGCAAGTACAGAG+AGG + chr1_4:49354008-49354027 Msa0167440:CDS 45.0%
GGATATTTAACTGGCTGTGC+AGG + chr1_4:49354096-49354115 Msa0167440:three_prime_UTR 45.0%
! ATGCTACGCCATTTGAGACA+AGG + chr1_4:49354137-49354156 Msa0167440:three_prime_UTR 45.0%
AATAGAGATGCTGCAGAAGC+TGG + chr1_4:49354175-49354194 Msa0167440:three_prime_UTR 45.0%
AGTGTCCTAAGCAAGTAGCT+CGG - chr1_4:49354328-49354347 None:intergenic 45.0%
!!! GCGGTTGTGTTTTTTGGGTT+TGG - chr1_4:49352539-49352558 None:intergenic 45.0%
TGGAGTGATCCTGAACCAAA+GGG - chr1_4:49352803-49352822 None:intergenic 45.0%
TTGGAGTGATCCTGAACCAA+AGG - chr1_4:49352804-49352823 None:intergenic 45.0%
AACAGGAACTTGGTTGCTGT+AGG + chr1_4:49352990-49353009 Msa0167440:CDS 45.0%
ACAGGAACTTGGTTGCTGTA+GGG + chr1_4:49352991-49353010 Msa0167440:CDS 45.0%
! GAGTCTGTTTTGCCTGAAGA+AGG + chr1_4:49353085-49353104 Msa0167440:CDS 45.0%
! TCTGTTTTGCCTGAAGAAGG+TGG + chr1_4:49353088-49353107 Msa0167440:CDS 45.0%
! TCCTCTTTTCCACCTTCTTC+AGG - chr1_4:49353100-49353119 None:intergenic 45.0%
TGAAGAAGGTGGAAAAGAGG+AGG + chr1_4:49353099-49353118 Msa0167440:CDS 45.0%
TCTGTGACTTCGACTTCAAC+TGG + chr1_4:49353172-49353191 Msa0167440:CDS 45.0%
CTGTGACTTCGACTTCAACT+GGG + chr1_4:49353173-49353192 Msa0167440:CDS 45.0%
GGTCTTACCCTCCTAATCAT+AGG + chr1_4:49353194-49353213 Msa0167440:CDS 45.0%
! TGATGATGATGATGAGGAGG+AGG + chr1_4:49353285-49353304 Msa0167440:CDS 45.0%
AGAAGGTGATGAATTGGGTG+TGG + chr1_4:49353321-49353340 Msa0167440:CDS 45.0%
GGTGTGGAGTTTGAAGAAGA+TGG + chr1_4:49353337-49353356 Msa0167440:CDS 45.0%
TGGGATACTCGAAGTTGAGA+AGG + chr1_4:49353362-49353381 Msa0167440:CDS 45.0%
GGGATACTCGAAGTTGAGAA+GGG + chr1_4:49353363-49353382 Msa0167440:CDS 45.0%
GGATACTCGAAGTTGAGAAG+GGG + chr1_4:49353364-49353383 Msa0167440:CDS 45.0%
GTCCTGTTCCTACTTGTGAA+AGG + chr1_4:49353425-49353444 Msa0167440:CDS 45.0%
TCCCTTTCACAAGTAGGAAC+AGG - chr1_4:49353430-49353449 None:intergenic 45.0%
CGGTTGAAAATATGGCTCAG+TGG + chr1_4:49353518-49353537 Msa0167440:CDS 45.0%
GGCTCAGTGGAAAGTTGTTA+AGG + chr1_4:49353531-49353550 Msa0167440:CDS 45.0%
! GTTCAACTTCTTTGGTGTGC+TGG - chr1_4:49353653-49353672 None:intergenic 45.0%
CACACCAAAGAAGTTGAACC+AGG + chr1_4:49353654-49353673 Msa0167440:CDS 45.0%
TAGCATCAACTGGGATTTCC+TGG - chr1_4:49353675-49353694 None:intergenic 45.0%
TCGATAGGCTAGCATCAACT+GGG - chr1_4:49353684-49353703 None:intergenic 45.0%
TTCGATAGGCTAGCATCAAC+TGG - chr1_4:49353685-49353704 None:intergenic 45.0%
! TGCTAGCCTATCGAATTGGT+TGG + chr1_4:49353690-49353709 Msa0167440:CDS 45.0%
! GCTAGCCTATCGAATTGGTT+GGG + chr1_4:49353691-49353710 Msa0167440:CDS 45.0%
TCGAATTGGTTGGGTTCATC+CGG + chr1_4:49353700-49353719 Msa0167440:CDS 45.0%
GACGACTACACCTGTTAACA+AGG + chr1_4:49353723-49353742 Msa0167440:CDS 45.0%
! AAGGCTTGTTTGTATGCTGG+TGG + chr1_4:49353742-49353761 Msa0167440:CDS 45.0%
TGTTGTGAGTTGCTCCTATC+AGG - chr1_4:49353781-49353800 None:intergenic 45.0%
GATAGGAGCAACTCACAACA+AGG + chr1_4:49353781-49353800 Msa0167440:CDS 45.0%
CTTACAAGGAGACTTCCTTG+GGG - chr1_4:49353893-49353912 None:intergenic 45.0%
CTCTTACAAGGAGACTTCCT+TGG - chr1_4:49353895-49353914 None:intergenic 45.0%
CCTATAATCGGCATCTCATC+TGG - chr1_4:49353919-49353938 None:intergenic 45.0%
! CCAGATGAGATGCCGATTAT+AGG + chr1_4:49353916-49353935 Msa0167440:CDS 45.0%
TAGGAACAGTTGGGTCCTAT+TGG + chr1_4:49353935-49353954 Msa0167440:CDS 45.0%
CACAACTAGCAAGTACAGAG+AGG + chr1_4:49354008-49354027 Msa0167440:CDS 45.0%
GGATATTTAACTGGCTGTGC+AGG + chr1_4:49354096-49354115 Msa0167440:three_prime_UTR 45.0%
! ATGCTACGCCATTTGAGACA+AGG + chr1_4:49354137-49354156 Msa0167440:three_prime_UTR 45.0%
AATAGAGATGCTGCAGAAGC+TGG + chr1_4:49354175-49354194 Msa0167440:three_prime_UTR 45.0%
AGTGTCCTAAGCAAGTAGCT+CGG - chr1_4:49354328-49354347 None:intergenic 45.0%
!! ATTTAATAATAATATTATTG+CGG + chr1_4:49352375-49352394 Msa0167440:five_prime_UTR 5.0%
!! ATTTAATAATAATATTATTG+CGG + chr1_4:49352375-49352394 Msa0167440:five_prime_UTR 5.0%
GCCTGAAGAAGGTGGAAAAG+AGG + chr1_4:49353096-49353115 Msa0167440:CDS 50.0%
AGGTGGAAAAGAGGAGGCTT+TGG + chr1_4:49353105-49353124 Msa0167440:CDS 50.0%
! GATGATGATGAGGAGGAGGA+TGG + chr1_4:49353289-49353308 Msa0167440:CDS 50.0%
!! TCTTTCTGAGGCCTTGATCG+TGG - chr1_4:49353568-49353587 None:intergenic 50.0%
CGAATTGGTTGGGTTCATCC+GGG + chr1_4:49353701-49353720 Msa0167440:CDS 50.0%
GTTAACAGGTGTAGTCGTCC+CGG - chr1_4:49353722-49353741 None:intergenic 50.0%
GCTTGTTTGTATGCTGGTGG+TGG + chr1_4:49353745-49353764 Msa0167440:CDS 50.0%
!! TTGTATGCTGGTGGTGGCAT+CGG + chr1_4:49353751-49353770 Msa0167440:CDS 50.0%
ACCAACCGAGCTACTTGCTT+AGG + chr1_4:49354320-49354339 Msa0167440:three_prime_UTR 50.0%
TCCTAAGCAAGTAGCTCGGT+TGG - chr1_4:49354324-49354343 None:intergenic 50.0%
GCCTGAAGAAGGTGGAAAAG+AGG + chr1_4:49353096-49353115 Msa0167440:CDS 50.0%
AGGTGGAAAAGAGGAGGCTT+TGG + chr1_4:49353105-49353124 Msa0167440:CDS 50.0%
! GATGATGATGAGGAGGAGGA+TGG + chr1_4:49353289-49353308 Msa0167440:CDS 50.0%
!! TCTTTCTGAGGCCTTGATCG+TGG - chr1_4:49353568-49353587 None:intergenic 50.0%
CGAATTGGTTGGGTTCATCC+GGG + chr1_4:49353701-49353720 Msa0167440:CDS 50.0%
GTTAACAGGTGTAGTCGTCC+CGG - chr1_4:49353722-49353741 None:intergenic 50.0%
GCTTGTTTGTATGCTGGTGG+TGG + chr1_4:49353745-49353764 Msa0167440:CDS 50.0%
!! TTGTATGCTGGTGGTGGCAT+CGG + chr1_4:49353751-49353770 Msa0167440:CDS 50.0%
ACCAACCGAGCTACTTGCTT+AGG + chr1_4:49354320-49354339 Msa0167440:three_prime_UTR 50.0%
TCCTAAGCAAGTAGCTCGGT+TGG - chr1_4:49354324-49354343 None:intergenic 50.0%
!! GTGGCATCGGTACTCCTGAT+AGG + chr1_4:49353764-49353783 Msa0167440:CDS 55.0%
TTTCCGCTACATCGTCCCCA+AGG + chr1_4:49353875-49353894 Msa0167440:CDS 55.0%
CTTCCTTGGGGACGATGTAG+CGG - chr1_4:49353881-49353900 None:intergenic 55.0%
GTGAGCAGGGACACCAAATG+AGG - chr1_4:49354302-49354321 None:intergenic 55.0%
!! AGTAGCTCGGTTGGTGAGCA+GGG - chr1_4:49354315-49354334 None:intergenic 55.0%
!! AAGTAGCTCGGTTGGTGAGC+AGG - chr1_4:49354316-49354335 None:intergenic 55.0%
!! GTGGCATCGGTACTCCTGAT+AGG + chr1_4:49353764-49353783 Msa0167440:CDS 55.0%
TTTCCGCTACATCGTCCCCA+AGG + chr1_4:49353875-49353894 Msa0167440:CDS 55.0%
CTTCCTTGGGGACGATGTAG+CGG - chr1_4:49353881-49353900 None:intergenic 55.0%
GTGAGCAGGGACACCAAATG+AGG - chr1_4:49354302-49354321 None:intergenic 55.0%
!! AGTAGCTCGGTTGGTGAGCA+GGG - chr1_4:49354315-49354334 None:intergenic 55.0%
!! AAGTAGCTCGGTTGGTGAGC+AGG - chr1_4:49354316-49354335 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49352322 49354581 49352322 ID=Msa0167440;Name=Msa0167440
chr1_4 mRNA 49352322 49354581 49352322 ID=Msa0167440-mRNA-1;Parent=Msa0167440;Name=Msa0167440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=183|1|1|1|1|1|3|537|411
chr1_4 exon 49352322 49352573 49352322 ID=Msa0167440-mRNA-1:exon:14465;Parent=Msa0167440-mRNA-1
chr1_4 exon 49352762 49352862 49352762 ID=Msa0167440-mRNA-1:exon:14466;Parent=Msa0167440-mRNA-1
chr1_4 exon 49352979 49354581 49352979 ID=Msa0167440-mRNA-1:exon:14467;Parent=Msa0167440-mRNA-1
chr1_4 five_prime_UTR 49352322 49352504 49352322 ID=Msa0167440-mRNA-1:five_prime_utr;Parent=Msa0167440-mRNA-1
chr1_4 CDS 49352505 49352573 49352505 ID=Msa0167440-mRNA-1:cds;Parent=Msa0167440-mRNA-1
chr1_4 CDS 49352762 49352862 49352762 ID=Msa0167440-mRNA-1:cds;Parent=Msa0167440-mRNA-1
chr1_4 CDS 49352979 49354044 49352979 ID=Msa0167440-mRNA-1:cds;Parent=Msa0167440-mRNA-1
chr1_4 three_prime_UTR 49354045 49354581 49354045 ID=Msa0167440-mRNA-1:three_prime_utr;Parent=Msa0167440-mRNA-1
Gene Sequence

>Msa0167440

ATGGGTTGTTTTCTTGGTTGCTTTGGTTCCTCCAAACCCAAAAAACACAACCGCAACAACGTGCTTCAAAGAGATGCTAATAGTAGCAAGCCACAGCAATACAATGTCCCTTTGGTTCAGGATCACTCCAAAACCCTACATACTCCTTCACTAGAATCACCACAATCACAGGATAAAACTGAACAGGAACTTGGTTGCTGTAGGGATAAAATTGAGGAGGAACTAAGTGTTACTGTTAGAAAGAAAGTAACTTTTGACTCCAATGTGAAAACCTATGAGTCTGTTTTGCCTGAAGAAGGTGGAAAAGAGGAGGCTTTGGCTGAACCAAACCATTCAAAGTCGTCTTCTTGTGAAGATAGTAGTTCTGTGACTTCGACTTCAACTGGGTCTTACCCTCCTAATCATAGGTATCAGAATTGTAGGGACAGTGATGATGAAGAAGAAGAAGTACTTGATGATTGGGCTAGTGATCTTAGTGATGATGATGATGAGGAGGAGGATGGAATTAGAGAAGAAGGTGATGAATTGGGTGTGGAGTTTGAAGAAGATGGAATGGGATACTCGAAGTTGAGAAGGGGTGATATTATTGATCATGTGTTTACTGAGGAAGTGGAGAGTCCTGTTCCTACTTGTGAAAGGGATGTGAAGTCAATTGGAGTCAATTTCAATGCTAGGGACAGAAGTGTTTATGTTCATTCTGTGCTGAATCCGGTTGAAAATATGGCTCAGTGGAAAGTTGTTAAGGCTAAAAGAACACCACGATCAAGGCCTCAGAAAGAGAATTTTGTTAGTTCCAACCATGAATCAGAGGTTTCATTTGGTGTCAAGGAAATTTCAGAGACCAGCACACCAAAGAAGTTGAACCAGGAAATCCCAGTTGATGCTAGCCTATCGAATTGGTTGGGTTCATCCGGGACGACTACACCTGTTAACAAGGCTTGTTTGTATGCTGGTGGTGGCATCGGTACTCCTGATAGGAGCAACTCACAACAAGGTTCAAATTCAGTGATAAGCCTTGAAGATAGGCCTATTTTAGGTGCTTTAACGGTGGAAGAGATTAAGCAATTTTCCGCTACATCGTCCCCAAGGAAGTCTCCTTGTAAGAGTCCAGATGAGATGCCGATTATAGGAACAGTTGGGTCCTATTGGAATTCTAATGAGGGTTCTGGTTCACCTTCATCCTTTAAAGGAATTCCAAACACAACTAGCAAGTACAGAGAGGTAAAGACGAAGTGA
Protein sequence

>Msa0167440

MGCFLGCFGSSKPKKHNRNNVLQRDANSSKPQQYNVPLVQDHSKTLHTPSLESPQSQDKTEQELGCCRDKIEEELSVTVRKKVTFDSNVKTYESVLPEEGGKEEALAEPNHSKSSSCEDSSSVTSTSTGSYPPNHRYQNCRDSDDEEEEVLDDWASDLSDDDDEEEDGIREEGDELGVEFEEDGMGYSKLRRGDIIDHVFTEEVESPVPTCERDVKSIGVNFNARDRSVYVHSVLNPVENMAQWKVVKAKRTPRSRPQKENFVSSNHESEVSFGVKEISETSTPKKLNQEIPVDASLSNWLGSSGTTTPVNKACLYAGGGIGTPDRSNSQQGSNSVISLEDRPILGALTVEEIKQFSATSSPRKSPCKSPDEMPIIGTVGSYWNSNEGSGSPSSFKGIPNTTSKYREVKTK*