AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075120 MtrunA17_Chr1g0183391 88.810 420 32 4 1 409 1 416 0.0 659
Msa0075120 MtrunA17_Chr1g0186341 27.302 315 188 9 1 303 1 286 1.09e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075120 AT5G44040.1 39.953 428 192 15 1 386 1 405 1.80e-63 210
Msa0075120 AT1G04030.2 39.602 452 192 21 1 410 1 413 1.03e-56 192
Msa0075120 AT1G04030.1 39.602 452 192 21 1 410 1 413 1.03e-56 192

Find 146 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGGTGAATTCTTATT+TGG 0.154855 1_2:+50193733 Msa0075120:three_prime_UTR
GGTTCACCTTCATCCTTTAA+AGG 0.187029 1_2:+50193634 Msa0075120:CDS
ATTTCCTGGTTCAACTTCTT+TGG 0.209021 1_2:-50193316 None:intergenic
CCTTCACTCCTTCAATTTCA+TGG 0.222289 1_2:+50192144 Msa0075120:exon
CCAGATGAGATGCCGATTAT+AGG 0.229389 1_2:+50193574 Msa0075120:CDS
TTCTTATTTGGATATTTAAC+TGG 0.269617 1_2:+50193745 Msa0075120:three_prime_UTR
CTGTACTTGCTAGTTGTGTT+TGG 0.276793 1_2:-50193661 None:intergenic
TGAAGGAGTATGTAGGGTTT+TGG 0.283066 1_2:-50192478 None:intergenic
CTACTTGTTCTCCTGTATTT+CGG 0.308548 1_2:+50194067 Msa0075120:three_prime_UTR
TAGAGAAGAAGGTGATGAAT+TGG 0.318471 1_2:+50192973 Msa0075120:CDS
TTCTCTTGTAATTATATACT+TGG 0.321333 1_2:+50194187 Msa0075120:three_prime_UTR
TCTGTGACTTCGACTTCAAC+TGG 0.327039 1_2:+50192830 Msa0075120:CDS
GCTGAATCCGGTTGAAAATA+TGG 0.327930 1_2:+50193168 Msa0075120:CDS
ATTTCGTGTCAAGGAAATTT+CGG 0.330928 1_2:+50193282 Msa0075120:CDS
TGGAATTCTAATGAGGGTTC+TGG 0.341982 1_2:+50193613 Msa0075120:CDS
TGTGTTTGGAATTCCTTTAA+AGG 0.345947 1_2:-50193647 None:intergenic
GACATTGAAGGGGTTTGAAT+AGG 0.348496 1_2:-50192086 None:intergenic
CCTATAATCGGCATCTCATC+TGG 0.351409 1_2:-50193574 None:intergenic
TAGGAACAGTTGGGTCCTAT+TGG 0.353133 1_2:+50193593 Msa0075120:CDS
TAGCATCAACTGGGATTTCC+TGG 0.358117 1_2:-50193330 None:intergenic
TTCGATAGGCTAGCATCAAC+TGG 0.358795 1_2:-50193340 None:intergenic
CACAAGAAGACGACTTTGAA+TGG 0.373294 1_2:-50192796 None:intergenic
ATACAATGTCCCTTTGGTTC+AGG 0.374830 1_2:+50192449 Msa0075120:CDS
AAGAAGAAGTACTTGATGAT+TGG 0.376669 1_2:+50192906 Msa0075120:CDS
TCGAATTGGTTGGGTTCATC+CGG 0.379742 1_2:+50193358 Msa0075120:CDS
TGTTGTGAGATGCTCCTATC+AGG 0.381760 1_2:-50193436 None:intergenic
CTAAAATAGGCCTATCTTCA+AGG 0.385904 1_2:-50193480 None:intergenic
TTCTCTAGCCTTGTCTCAAA+TGG 0.386868 1_2:-50193803 None:intergenic
CTTCACTCCTTCAATTTCAT+GGG 0.388010 1_2:+50192145 Msa0075120:exon
TACAAACAAGCCTTGTTAAC+AGG 0.398342 1_2:-50193391 None:intergenic
ATCATAGGTATCAGAATTGT+AGG 0.406684 1_2:+50192867 Msa0075120:CDS
CTCTTACAAGGAGACTTCCT+TGG 0.412158 1_2:-50193550 None:intergenic
TTCAGGCAAAACAGACTCAT+AGG 0.416926 1_2:-50192738 None:intergenic
CAATTCTGATACCTATGATT+AGG 0.419539 1_2:-50192863 None:intergenic
GAAGACGACTTTGAATGGTT+TGG 0.422139 1_2:-50192791 None:intergenic
CAGTGATAAGCCTTGAAGAT+AGG 0.427800 1_2:+50193470 Msa0075120:CDS
GACCCAACTGTTCCTATAAT+CGG 0.428480 1_2:-50193586 None:intergenic
AAGTAGCTCGGTTGGTGAGC+AGG 0.429009 1_2:-50193971 None:intergenic
AGAAGAAGTACTTGATGATT+GGG 0.432512 1_2:+50192907 Msa0075120:CDS
GGTCTTACCCTCCTAATCAT+AGG 0.436853 1_2:+50192852 Msa0075120:CDS
TCTTACAAGGAGACTTCCTT+GGG 0.437790 1_2:-50193549 None:intergenic
TGCAATGGTGTGTTTATTTG+TGG 0.437909 1_2:+50194097 Msa0075120:three_prime_UTR
GAGGATGGAATTAGAGAAGA+AGG 0.439707 1_2:+50192962 Msa0075120:CDS
GGAATTCCTTTAAAGGATGA+AGG 0.441727 1_2:-50193640 None:intergenic
GGATATTTAACTGGCTGTGC+AGG 0.443435 1_2:+50193754 Msa0075120:three_prime_UTR
TTGGAGTCAATTTCAATGCT+AGG 0.446266 1_2:+50193119 Msa0075120:CDS
ACCGTTAAAGCACCTAAAAT+AGG 0.447229 1_2:-50193493 None:intergenic
ATTCTAGTGAAGGAGTATGT+AGG 0.448451 1_2:-50192485 None:intergenic
TGCAGGATAAGAAGGTGAAT+TGG 0.452750 1_2:+50193771 Msa0075120:three_prime_UTR
AGAGAAGAAGGTGATGAATT+GGG 0.457368 1_2:+50192974 Msa0075120:CDS
GGCTCAGTGGAAAGTTGTTA+AGG 0.459239 1_2:+50193189 Msa0075120:CDS
GTGTAGGGATAAAACTGAAC+AGG 0.461110 1_2:+50192631 Msa0075120:intron
AACAAGGCTTGTTTGTATGC+TGG 0.461233 1_2:+50193397 Msa0075120:CDS
TGCTAGCCTATCGAATTGGT+TGG 0.473010 1_2:+50193348 Msa0075120:CDS
TTGATGCTAGCCTATCGAAT+TGG 0.473087 1_2:+50193344 Msa0075120:CDS
TGTTCATTCTGTGCTGAATC+CGG 0.473897 1_2:+50193156 Msa0075120:CDS
AATAGAGATGCTGCAGAAGC+TGG 0.478976 1_2:+50193833 Msa0075120:three_prime_UTR
GCAATGGTGTGTTTATTTGT+GGG 0.479671 1_2:+50194098 Msa0075120:three_prime_UTR
ACAGCAATACAATGTCCCTT+TGG 0.481214 1_2:+50192443 Msa0075120:CDS
TCCCTTTCACAAGTAGGAAC+AGG 0.484213 1_2:-50193085 None:intergenic
GTCCTATTGGAATTCTAATG+AGG 0.486281 1_2:+50193606 Msa0075120:CDS
AAAACAACCCATGAAATTGA+AGG 0.487256 1_2:-50192152 None:intergenic
AGGTGGAAAAGAGGAGGCTT+TGG 0.488583 1_2:+50192763 Msa0075120:CDS
GCTAGCCTATCGAATTGGTT+GGG 0.489992 1_2:+50193349 Msa0075120:CDS
GAAAGGGATGTGAAGTCAAT+TGG 0.490728 1_2:+50193100 Msa0075120:CDS
GTGGCATCGGTACTCCTGAT+AGG 0.491698 1_2:+50193422 Msa0075120:CDS
AAAAGTTTGCAATACTGTGC+AGG 0.492069 1_2:+50193884 Msa0075120:three_prime_UTR
ATGCCGATTATAGGAACAGT+TGG 0.502557 1_2:+50193583 Msa0075120:CDS
ACACTACCCTATTTGAGAAA+AGG 0.502814 1_2:+50194001 Msa0075120:three_prime_UTR
TCCTGTTCCTACTTGTGAAA+GGG 0.502959 1_2:+50193084 Msa0075120:CDS
AGAGGTTTCATTTCGTGTCA+AGG 0.504181 1_2:+50193273 Msa0075120:CDS
GTCAAGGAAATTTCGGAGGC+CGG 0.506460 1_2:+50193289 Msa0075120:CDS
GTTCAACTTCTTTGGTGTGC+CGG 0.508061 1_2:-50193308 None:intergenic
TTCTGATACCTATGATTAGG+AGG 0.509018 1_2:-50192860 None:intergenic
TGGAGTCAATTTCAATGCTA+GGG 0.511145 1_2:+50193120 Msa0075120:CDS
GCCTGAAGAAGGTGGAAAAG+AGG 0.511476 1_2:+50192754 Msa0075120:CDS
ATTTAATAATAATATTATTG+CGG 0.512075 1_2:+50192024 Msa0075120:five_prime_UTR
CTAAAAGAACACCACGATCA+AGG 0.516379 1_2:+50193212 Msa0075120:CDS
ACTGGCTGTGCAGGATAAGA+AGG 0.516689 1_2:+50193763 Msa0075120:three_prime_UTR
GATAAAACTGAACAGGAACT+TGG 0.520043 1_2:+50192638 Msa0075120:CDS
GATGATGATGATGAGGAGGA+TGG 0.524615 1_2:+50192947 Msa0075120:CDS
TTGTATGCTGGTGGTGGCAT+CGG 0.525729 1_2:+50193409 Msa0075120:CDS
GAAATGAAACCTCTGTATCA+TGG 0.527422 1_2:-50193264 None:intergenic
TTCTAGTGAAGGAGTATGTA+GGG 0.527537 1_2:-50192484 None:intergenic
CGAATTGGTTGGGTTCATCC+GGG 0.529197 1_2:+50193359 Msa0075120:CDS
TCATGTGTTTACTGAGGAAG+TGG 0.530102 1_2:+50193057 Msa0075120:CDS
TTGCTGTAGGGATAAAATTG+AGG 0.530685 1_2:+50192661 Msa0075120:CDS
GTTAACAGGTGTAGTTGTCC+CGG 0.536876 1_2:-50193377 None:intergenic
ATCTCATCTGGACTCTTACA+AGG 0.536876 1_2:-50193562 None:intergenic
ACCAACCGAGCTACTTGCTT+AGG 0.537001 1_2:+50193978 Msa0075120:three_prime_UTR
ACCCTCATTAGAATTCCAAT+AGG 0.541146 1_2:-50193608 None:intergenic
CTAACAAAATTCTCTTTCTG+AGG 0.541406 1_2:-50193235 None:intergenic
GGTGTGGAGTTTGAAGAAGA+TGG 0.542548 1_2:+50192995 Msa0075120:CDS
CTGTGACTTCGACTTCAACT+GGG 0.542775 1_2:+50192831 Msa0075120:CDS
GTCCTGTTCCTACTTGTGAA+AGG 0.550293 1_2:+50193083 Msa0075120:CDS
ATAATTGCTTACTGTGATTG+TGG 0.550999 1_2:-50192510 None:intergenic
TCCTAAGCAAGTAGCTCGGT+TGG 0.552494 1_2:-50193979 None:intergenic
AGAAGGTGATGAATTGGGTG+TGG 0.556341 1_2:+50192979 Msa0075120:CDS
AGTAGCTCGGTTGGTGAGCA+GGG 0.558332 1_2:-50193970 None:intergenic
GACAACTACACCTGTTAACA+AGG 0.558489 1_2:+50193381 Msa0075120:CDS
GCTTGTTTGTATGCTGGTGG+TGG 0.559146 1_2:+50193403 Msa0075120:CDS
TTGGAGTGATCCTGAACCAA+AGG 0.559802 1_2:-50192459 None:intergenic
TGGGATACTCGAAGTTGAGA+AGG 0.562184 1_2:+50193020 Msa0075120:CDS
GAGTTTGAAGAAGATGGAAT+GGG 0.564803 1_2:+50193001 Msa0075120:CDS
TTCACATCCCTTTCACAAGT+AGG 0.565405 1_2:-50193091 None:intergenic
GGAGTTTGAAGAAGATGGAA+TGG 0.569181 1_2:+50193000 Msa0075120:CDS
TTACTTGAAGCACGTTGTTG+CGG 0.569342 1_2:-50192213 None:intergenic
CACACCAAAGAAGTTGAACC+AGG 0.569677 1_2:+50193312 Msa0075120:CDS
TCCTATTGGAATTCTAATGA+GGG 0.572382 1_2:+50193607 Msa0075120:CDS
TGGAGTGATCCTGAACCAAA+GGG 0.574081 1_2:-50192458 None:intergenic
TGCCGATTATAGGAACAGTT+GGG 0.574954 1_2:+50193584 Msa0075120:CDS
GGGATACTCGAAGTTGAGAA+GGG 0.575574 1_2:+50193021 Msa0075120:CDS
AGTTGGTGAGTGACATTGAA+GGG 0.575882 1_2:-50192097 None:intergenic
ACAGGAACTTGGTTGCTGTA+GGG 0.576162 1_2:+50192649 Msa0075120:CDS
TCTTTCTGAGGCCTTGATCG+TGG 0.579965 1_2:-50193223 None:intergenic
CCATGAAATTGAAGGAGTGA+AGG 0.580469 1_2:-50192144 None:intergenic
TCATAGGTATCAGAATTGTA+GGG 0.580930 1_2:+50192868 Msa0075120:CDS
CTATAGAAAACATTGAATAG+AGG 0.583081 1_2:+50194024 Msa0075120:three_prime_UTR
TATTTCGGAAAAGTTTGCAA+TGG 0.586496 1_2:+50194082 Msa0075120:three_prime_UTR
TGAAACCTCTGTATCATGGT+TGG 0.594134 1_2:-50193260 None:intergenic
GCACTCAACGATGTTTATAA+CGG 0.601720 1_2:+50191976 Msa0075120:five_prime_UTR
CTTCCTTGGGGACGATGTAG+CGG 0.603133 1_2:-50193536 None:intergenic
ATGAACCCAACCAATTCGAT+AGG 0.604616 1_2:-50193354 None:intergenic
GTCTCAGATGAAGAATGAGT+TGG 0.612240 1_2:-50192114 None:intergenic
TTTCCGCTACATCGTCCCCA+AGG 0.613077 1_2:+50193533 Msa0075120:CDS
AACAGGAACTTGGTTGCTGT+AGG 0.616293 1_2:+50192648 Msa0075120:CDS
AAAGGGACATTGTATTGCTG+TGG 0.618091 1_2:-50192441 None:intergenic
TCGTGTCAAGGAAATTTCGG+AGG 0.626776 1_2:+50193285 Msa0075120:CDS
AAGGCTTGTTTGTATGCTGG+TGG 0.635824 1_2:+50193400 Msa0075120:CDS
CTGTAGGGATAAAATTGAGG+AGG 0.639832 1_2:+50192664 Msa0075120:CDS
GTGAGCAGGGACACCAAAAG+AGG 0.640910 1_2:-50193957 None:intergenic
TCTGATACCTATGATTAGGA+GGG 0.641103 1_2:-50192859 None:intergenic
GATTGTGGTGATTCTAGTGA+AGG 0.644878 1_2:-50192495 None:intergenic
TATTGATCATGTGTTTACTG+AGG 0.653342 1_2:+50193051 Msa0075120:CDS
ATGCTACGCCATTTGAGACA+AGG 0.659616 1_2:+50193795 Msa0075120:three_prime_UTR
GTTGGTGAGTGACATTGAAG+GGG 0.659930 1_2:-50192096 None:intergenic
TCGATAGGCTAGCATCAACT+GGG 0.664173 1_2:-50193339 None:intergenic
TGAAGAAGGTGGAAAAGAGG+AGG 0.666349 1_2:+50192757 Msa0075120:CDS
GATAGGAGCATCTCACAACA+AGG 0.666708 1_2:+50193439 Msa0075120:CDS
TAGTACCAACCATGATACAG+AGG 0.668642 1_2:+50193255 Msa0075120:CDS
AGTGTCCTAAGCAAGTAGCT+CGG 0.676997 1_2:-50193983 None:intergenic
GGATACTCGAAGTTGAGAAG+GGG 0.678998 1_2:+50193022 Msa0075120:CDS
CGGTTGAAAATATGGCTCAG+TGG 0.681764 1_2:+50193176 Msa0075120:CDS
GAGTTGGTGAGTGACATTGA+AGG 0.686131 1_2:-50192098 None:intergenic
CACAACTAGCAAGTACAGAG+AGG 0.701957 1_2:+50193666 Msa0075120:CDS
CTTACAAGGAGACTTCCTTG+GGG 0.775099 1_2:-50193548 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTATTTGAAAAAAG+TGG - chr1_2:50192008-50192027 None:intergenic 10.0%
!! AAATAATTATTTGAAAAAAG+TGG - chr1_2:50192008-50192027 None:intergenic 10.0%
!! AAGAAAATAGAAAGTAAAAA+GGG - chr1_2:50192254-50192273 None:intergenic 15.0%
!!! AAAATAGAGCTAAATTTTTT+AGG + chr1_2:50192359-50192378 Msa0075120:intron 15.0%
!! GTAAAAGAAATTAAGATAAA+GGG - chr1_2:50192398-50192417 None:intergenic 15.0%
!! TGTAAAAGAAATTAAGATAA+AGG - chr1_2:50192399-50192418 None:intergenic 15.0%
!! AAGAAAATAGAAAGTAAAAA+GGG - chr1_2:50192254-50192273 None:intergenic 15.0%
!!! AAAATAGAGCTAAATTTTTT+AGG + chr1_2:50192359-50192378 Msa0075120:intron 15.0%
!! GTAAAAGAAATTAAGATAAA+GGG - chr1_2:50192398-50192417 None:intergenic 15.0%
!! TGTAAAAGAAATTAAGATAA+AGG - chr1_2:50192399-50192418 None:intergenic 15.0%
!! AGAAAATAGAAAGTAAAAAG+GGG - chr1_2:50192253-50192272 None:intergenic 20.0%
!! CAAGAAAATAGAAAGTAAAA+AGG - chr1_2:50192255-50192274 None:intergenic 20.0%
!!! AGCTAAATTTTTTAGGTTTT+AGG + chr1_2:50192366-50192385 Msa0075120:intron 20.0%
!!! TTCTTATTTGGATATTTAAC+TGG + chr1_2:50193745-50193764 Msa0075120:three_prime_UTR 20.0%
!! CTTAAAAACTAACATAACTT+TGG - chr1_2:50193931-50193950 None:intergenic 20.0%
!!! CAAAGTTATGTTAGTTTTTA+AGG + chr1_2:50193929-50193948 Msa0075120:three_prime_UTR 20.0%
!! TTCTCTTGTAATTATATACT+TGG + chr1_2:50194187-50194206 Msa0075120:three_prime_UTR 20.0%
!! AGAAAATAGAAAGTAAAAAG+GGG - chr1_2:50192253-50192272 None:intergenic 20.0%
!! CAAGAAAATAGAAAGTAAAA+AGG - chr1_2:50192255-50192274 None:intergenic 20.0%
!!! AGCTAAATTTTTTAGGTTTT+AGG + chr1_2:50192366-50192385 Msa0075120:intron 20.0%
!!! TTCTTATTTGGATATTTAAC+TGG + chr1_2:50193745-50193764 Msa0075120:three_prime_UTR 20.0%
!! CTTAAAAACTAACATAACTT+TGG - chr1_2:50193931-50193950 None:intergenic 20.0%
!!! CAAAGTTATGTTAGTTTTTA+AGG + chr1_2:50193929-50193948 Msa0075120:three_prime_UTR 20.0%
!! TTCTCTTGTAATTATATACT+TGG + chr1_2:50194187-50194206 Msa0075120:three_prime_UTR 20.0%
! AAAATAGAAAGTAAAAAGGG+GGG - chr1_2:50192251-50192270 None:intergenic 25.0%
! GAAAATAGAAAGTAAAAAGG+GGG - chr1_2:50192252-50192271 None:intergenic 25.0%
! TTGGAAGTAAACAAAGAAAA+GGG - chr1_2:50192324-50192343 None:intergenic 25.0%
! ATTGGAAGTAAACAAAGAAA+AGG - chr1_2:50192325-50192344 None:intergenic 25.0%
!!! TTGTTTTTTTGTTGTTGTGT+AGG + chr1_2:50192615-50192634 Msa0075120:intron 25.0%
!!! TGTTTTTTTGTTGTTGTGTA+GGG + chr1_2:50192616-50192635 Msa0075120:intron 25.0%
!!! ATTTTCACTCATTAGTTTGA+TGG + chr1_2:50193718-50193737 Msa0075120:three_prime_UTR 25.0%
!!! TTTGATGGTGAATTCTTATT+TGG + chr1_2:50193733-50193752 Msa0075120:three_prime_UTR 25.0%
!!! AAACTTTTCTAAAATGCATG+AGG - chr1_2:50193872-50193891 None:intergenic 25.0%
! CTATAGAAAACATTGAATAG+AGG + chr1_2:50194024-50194043 Msa0075120:three_prime_UTR 25.0%
! AAAATAGAAAGTAAAAAGGG+GGG - chr1_2:50192251-50192270 None:intergenic 25.0%
! GAAAATAGAAAGTAAAAAGG+GGG - chr1_2:50192252-50192271 None:intergenic 25.0%
! TTGGAAGTAAACAAAGAAAA+GGG - chr1_2:50192324-50192343 None:intergenic 25.0%
! ATTGGAAGTAAACAAAGAAA+AGG - chr1_2:50192325-50192344 None:intergenic 25.0%
!!! TTGTTTTTTTGTTGTTGTGT+AGG + chr1_2:50192615-50192634 Msa0075120:intron 25.0%
!!! TGTTTTTTTGTTGTTGTGTA+GGG + chr1_2:50192616-50192635 Msa0075120:intron 25.0%
!!! ATTTTCACTCATTAGTTTGA+TGG + chr1_2:50193718-50193737 Msa0075120:three_prime_UTR 25.0%
!!! TTTGATGGTGAATTCTTATT+TGG + chr1_2:50193733-50193752 Msa0075120:three_prime_UTR 25.0%
!!! AAACTTTTCTAAAATGCATG+AGG - chr1_2:50193872-50193891 None:intergenic 25.0%
! CTATAGAAAACATTGAATAG+AGG + chr1_2:50194024-50194043 Msa0075120:three_prime_UTR 25.0%
AAAACAACCCATGAAATTGA+AGG - chr1_2:50192155-50192174 None:intergenic 30.0%
!! AATTTCATGGGTTGTTTTCT+TGG + chr1_2:50192157-50192176 Msa0075120:exon 30.0%
AAATAGAAAGTAAAAAGGGG+GGG - chr1_2:50192250-50192269 None:intergenic 30.0%
ATAATTGCTTACTGTGATTG+TGG - chr1_2:50192513-50192532 None:intergenic 30.0%
AAGCTTCCAAAAATAGAAAG+TGG - chr1_2:50192553-50192572 None:intergenic 30.0%
CAATTCTGATACCTATGATT+AGG - chr1_2:50192866-50192885 None:intergenic 30.0%
ATCATAGGTATCAGAATTGT+AGG + chr1_2:50192867-50192886 Msa0075120:CDS 30.0%
TCATAGGTATCAGAATTGTA+GGG + chr1_2:50192868-50192887 Msa0075120:CDS 30.0%
!! AAGAAGAAGTACTTGATGAT+TGG + chr1_2:50192906-50192925 Msa0075120:CDS 30.0%
!! AGAAGAAGTACTTGATGATT+GGG + chr1_2:50192907-50192926 Msa0075120:CDS 30.0%
TATTGATCATGTGTTTACTG+AGG + chr1_2:50193051-50193070 Msa0075120:CDS 30.0%
CTAACAAAATTCTCTTTCTG+AGG - chr1_2:50193238-50193257 None:intergenic 30.0%
ATTTCGTGTCAAGGAAATTT+CGG + chr1_2:50193282-50193301 Msa0075120:CDS 30.0%
TCCTATTGGAATTCTAATGA+GGG + chr1_2:50193607-50193626 Msa0075120:CDS 30.0%
! TGTGTTTGGAATTCCTTTAA+AGG - chr1_2:50193650-50193669 None:intergenic 30.0%
! AAGACGAAGTGAATTTTTGT+TGG + chr1_2:50193691-50193710 Msa0075120:exon 30.0%
!!! TTTTAAGGTTTGACCTCTTT+TGG + chr1_2:50193944-50193963 Msa0075120:three_prime_UTR 30.0%
! CTATAGCCTTTTCTCAAATA+GGG - chr1_2:50194010-50194029 None:intergenic 30.0%
! TCTATAGCCTTTTCTCAAAT+AGG - chr1_2:50194011-50194030 None:intergenic 30.0%
TATTTCGGAAAAGTTTGCAA+TGG + chr1_2:50194082-50194101 Msa0075120:three_prime_UTR 30.0%
AAAACAACCCATGAAATTGA+AGG - chr1_2:50192155-50192174 None:intergenic 30.0%
!! AATTTCATGGGTTGTTTTCT+TGG + chr1_2:50192157-50192176 Msa0075120:exon 30.0%
AAATAGAAAGTAAAAAGGGG+GGG - chr1_2:50192250-50192269 None:intergenic 30.0%
ATAATTGCTTACTGTGATTG+TGG - chr1_2:50192513-50192532 None:intergenic 30.0%
AAGCTTCCAAAAATAGAAAG+TGG - chr1_2:50192553-50192572 None:intergenic 30.0%
CAATTCTGATACCTATGATT+AGG - chr1_2:50192866-50192885 None:intergenic 30.0%
ATCATAGGTATCAGAATTGT+AGG + chr1_2:50192867-50192886 Msa0075120:CDS 30.0%
TCATAGGTATCAGAATTGTA+GGG + chr1_2:50192868-50192887 Msa0075120:CDS 30.0%
!! AAGAAGAAGTACTTGATGAT+TGG + chr1_2:50192906-50192925 Msa0075120:CDS 30.0%
!! AGAAGAAGTACTTGATGATT+GGG + chr1_2:50192907-50192926 Msa0075120:CDS 30.0%
TATTGATCATGTGTTTACTG+AGG + chr1_2:50193051-50193070 Msa0075120:CDS 30.0%
CTAACAAAATTCTCTTTCTG+AGG - chr1_2:50193238-50193257 None:intergenic 30.0%
ATTTCGTGTCAAGGAAATTT+CGG + chr1_2:50193282-50193301 Msa0075120:CDS 30.0%
TCCTATTGGAATTCTAATGA+GGG + chr1_2:50193607-50193626 Msa0075120:CDS 30.0%
! TGTGTTTGGAATTCCTTTAA+AGG - chr1_2:50193650-50193669 None:intergenic 30.0%
! AAGACGAAGTGAATTTTTGT+TGG + chr1_2:50193691-50193710 Msa0075120:exon 30.0%
!!! TTTTAAGGTTTGACCTCTTT+TGG + chr1_2:50193944-50193963 Msa0075120:three_prime_UTR 30.0%
! CTATAGCCTTTTCTCAAATA+GGG - chr1_2:50194010-50194029 None:intergenic 30.0%
! TCTATAGCCTTTTCTCAAAT+AGG - chr1_2:50194011-50194030 None:intergenic 30.0%
TATTTCGGAAAAGTTTGCAA+TGG + chr1_2:50194082-50194101 Msa0075120:three_prime_UTR 30.0%
GCACTCAACGATGTTTATAA+CGG + chr1_2:50191976-50191995 Msa0075120:five_prime_UTR 35.0%
CTTCACTCCTTCAATTTCAT+GGG + chr1_2:50192145-50192164 Msa0075120:exon 35.0%
!!! TTGTTGCGGTTGTGTTTTTT+GGG - chr1_2:50192202-50192221 None:intergenic 35.0%
! TTCTAGTGAAGGAGTATGTA+GGG - chr1_2:50192487-50192506 None:intergenic 35.0%
! ATTCTAGTGAAGGAGTATGT+AGG - chr1_2:50192488-50192507 None:intergenic 35.0%
! CACTCACCACTTTCTATTTT+TGG + chr1_2:50192544-50192563 Msa0075120:intron 35.0%
GATAAAACTGAACAGGAACT+TGG + chr1_2:50192638-50192657 Msa0075120:CDS 35.0%
TTGCTGTAGGGATAAAATTG+AGG + chr1_2:50192661-50192680 Msa0075120:CDS 35.0%
! AGACTCATAGGTTTTCACAT+TGG - chr1_2:50192729-50192748 None:intergenic 35.0%
TCTGATACCTATGATTAGGA+GGG - chr1_2:50192862-50192881 None:intergenic 35.0%
TTCTGATACCTATGATTAGG+AGG - chr1_2:50192863-50192882 None:intergenic 35.0%
! TAGTGATGATGATGATGATG+AGG + chr1_2:50192940-50192959 Msa0075120:CDS 35.0%
TAGAGAAGAAGGTGATGAAT+TGG + chr1_2:50192973-50192992 Msa0075120:CDS 35.0%
AGAGAAGAAGGTGATGAATT+GGG + chr1_2:50192974-50192993 Msa0075120:CDS 35.0%
GAGTTTGAAGAAGATGGAAT+GGG + chr1_2:50193001-50193020 Msa0075120:CDS 35.0%
TTGGAGTCAATTTCAATGCT+AGG + chr1_2:50193119-50193138 Msa0075120:CDS 35.0%
TGGAGTCAATTTCAATGCTA+GGG + chr1_2:50193120-50193139 Msa0075120:CDS 35.0%
GAAATGAAACCTCTGTATCA+TGG - chr1_2:50193267-50193286 None:intergenic 35.0%
ATTTCCTGGTTCAACTTCTT+TGG - chr1_2:50193319-50193338 None:intergenic 35.0%
!! TACAAACAAGCCTTGTTAAC+AGG - chr1_2:50193394-50193413 None:intergenic 35.0%
CTAAAATAGGCCTATCTTCA+AGG - chr1_2:50193483-50193502 None:intergenic 35.0%
! CTTGAAGATAGGCCTATTTT+AGG + chr1_2:50193481-50193500 Msa0075120:CDS 35.0%
!! GCCTATTTTAGGTGCTTTAA+CGG + chr1_2:50193492-50193511 Msa0075120:CDS 35.0%
! ACCGTTAAAGCACCTAAAAT+AGG - chr1_2:50193496-50193515 None:intergenic 35.0%
!! TATTTTAGGTGCTTTAACGG+TGG + chr1_2:50193495-50193514 Msa0075120:CDS 35.0%
GTCCTATTGGAATTCTAATG+AGG + chr1_2:50193606-50193625 Msa0075120:CDS 35.0%
ACCCTCATTAGAATTCCAAT+AGG - chr1_2:50193611-50193630 None:intergenic 35.0%
! GGAATTCCTTTAAAGGATGA+AGG - chr1_2:50193643-50193662 None:intergenic 35.0%
AAAAGTTTGCAATACTGTGC+AGG + chr1_2:50193884-50193903 Msa0075120:three_prime_UTR 35.0%
ACACTACCCTATTTGAGAAA+AGG + chr1_2:50194001-50194020 Msa0075120:three_prime_UTR 35.0%
CTACTTGTTCTCCTGTATTT+CGG + chr1_2:50194067-50194086 Msa0075120:three_prime_UTR 35.0%
! TGCAAACTTTTCCGAAATAC+AGG - chr1_2:50194081-50194100 None:intergenic 35.0%
TGCAATGGTGTGTTTATTTG+TGG + chr1_2:50194097-50194116 Msa0075120:three_prime_UTR 35.0%
GCAATGGTGTGTTTATTTGT+GGG + chr1_2:50194098-50194117 Msa0075120:three_prime_UTR 35.0%
GCACTCAACGATGTTTATAA+CGG + chr1_2:50191976-50191995 Msa0075120:five_prime_UTR 35.0%
CTTCACTCCTTCAATTTCAT+GGG + chr1_2:50192145-50192164 Msa0075120:exon 35.0%
!!! TTGTTGCGGTTGTGTTTTTT+GGG - chr1_2:50192202-50192221 None:intergenic 35.0%
! TTCTAGTGAAGGAGTATGTA+GGG - chr1_2:50192487-50192506 None:intergenic 35.0%
! ATTCTAGTGAAGGAGTATGT+AGG - chr1_2:50192488-50192507 None:intergenic 35.0%
! CACTCACCACTTTCTATTTT+TGG + chr1_2:50192544-50192563 Msa0075120:intron 35.0%
GATAAAACTGAACAGGAACT+TGG + chr1_2:50192638-50192657 Msa0075120:CDS 35.0%
TTGCTGTAGGGATAAAATTG+AGG + chr1_2:50192661-50192680 Msa0075120:CDS 35.0%
! AGACTCATAGGTTTTCACAT+TGG - chr1_2:50192729-50192748 None:intergenic 35.0%
TCTGATACCTATGATTAGGA+GGG - chr1_2:50192862-50192881 None:intergenic 35.0%
TTCTGATACCTATGATTAGG+AGG - chr1_2:50192863-50192882 None:intergenic 35.0%
! TAGTGATGATGATGATGATG+AGG + chr1_2:50192940-50192959 Msa0075120:CDS 35.0%
TAGAGAAGAAGGTGATGAAT+TGG + chr1_2:50192973-50192992 Msa0075120:CDS 35.0%
AGAGAAGAAGGTGATGAATT+GGG + chr1_2:50192974-50192993 Msa0075120:CDS 35.0%
GAGTTTGAAGAAGATGGAAT+GGG + chr1_2:50193001-50193020 Msa0075120:CDS 35.0%
TTGGAGTCAATTTCAATGCT+AGG + chr1_2:50193119-50193138 Msa0075120:CDS 35.0%
TGGAGTCAATTTCAATGCTA+GGG + chr1_2:50193120-50193139 Msa0075120:CDS 35.0%
GAAATGAAACCTCTGTATCA+TGG - chr1_2:50193267-50193286 None:intergenic 35.0%
ATTTCCTGGTTCAACTTCTT+TGG - chr1_2:50193319-50193338 None:intergenic 35.0%
!! TACAAACAAGCCTTGTTAAC+AGG - chr1_2:50193394-50193413 None:intergenic 35.0%
CTAAAATAGGCCTATCTTCA+AGG - chr1_2:50193483-50193502 None:intergenic 35.0%
! CTTGAAGATAGGCCTATTTT+AGG + chr1_2:50193481-50193500 Msa0075120:CDS 35.0%
!! GCCTATTTTAGGTGCTTTAA+CGG + chr1_2:50193492-50193511 Msa0075120:CDS 35.0%
! ACCGTTAAAGCACCTAAAAT+AGG - chr1_2:50193496-50193515 None:intergenic 35.0%
!! TATTTTAGGTGCTTTAACGG+TGG + chr1_2:50193495-50193514 Msa0075120:CDS 35.0%
GTCCTATTGGAATTCTAATG+AGG + chr1_2:50193606-50193625 Msa0075120:CDS 35.0%
ACCCTCATTAGAATTCCAAT+AGG - chr1_2:50193611-50193630 None:intergenic 35.0%
! GGAATTCCTTTAAAGGATGA+AGG - chr1_2:50193643-50193662 None:intergenic 35.0%
AAAAGTTTGCAATACTGTGC+AGG + chr1_2:50193884-50193903 Msa0075120:three_prime_UTR 35.0%
ACACTACCCTATTTGAGAAA+AGG + chr1_2:50194001-50194020 Msa0075120:three_prime_UTR 35.0%
CTACTTGTTCTCCTGTATTT+CGG + chr1_2:50194067-50194086 Msa0075120:three_prime_UTR 35.0%
! TGCAAACTTTTCCGAAATAC+AGG - chr1_2:50194081-50194100 None:intergenic 35.0%
TGCAATGGTGTGTTTATTTG+TGG + chr1_2:50194097-50194116 Msa0075120:three_prime_UTR 35.0%
GCAATGGTGTGTTTATTTGT+GGG + chr1_2:50194098-50194117 Msa0075120:three_prime_UTR 35.0%
GACATTGAAGGGGTTTGAAT+AGG - chr1_2:50192089-50192108 None:intergenic 40.0%
!! AGTTGGTGAGTGACATTGAA+GGG - chr1_2:50192100-50192119 None:intergenic 40.0%
GTCTCAGATGAAGAATGAGT+TGG - chr1_2:50192117-50192136 None:intergenic 40.0%
CCATGAAATTGAAGGAGTGA+AGG - chr1_2:50192147-50192166 None:intergenic 40.0%
CCTTCACTCCTTCAATTTCA+TGG + chr1_2:50192144-50192163 Msa0075120:exon 40.0%
!! GGTTGTTTTCTTGGTTGCTT+TGG + chr1_2:50192166-50192185 Msa0075120:CDS 40.0%
!!! GTTGTGTTTTTTGGGTTTGG+AGG - chr1_2:50192194-50192213 None:intergenic 40.0%
!!! GTTGTTGCGGTTGTGTTTTT+TGG - chr1_2:50192203-50192222 None:intergenic 40.0%
TTACTTGAAGCACGTTGTTG+CGG - chr1_2:50192216-50192235 None:intergenic 40.0%
!! TTTTGCTGCTGAGAAAGCAT+TGG - chr1_2:50192343-50192362 None:intergenic 40.0%
AAAGGGACATTGTATTGCTG+TGG - chr1_2:50192444-50192463 None:intergenic 40.0%
ACAGCAATACAATGTCCCTT+TGG + chr1_2:50192443-50192462 Msa0075120:CDS 40.0%
! ATACAATGTCCCTTTGGTTC+AGG + chr1_2:50192449-50192468 Msa0075120:CDS 40.0%
!! TGAAGGAGTATGTAGGGTTT+TGG - chr1_2:50192481-50192500 None:intergenic 40.0%
GATTGTGGTGATTCTAGTGA+AGG - chr1_2:50192498-50192517 None:intergenic 40.0%
GTGTAGGGATAAAACTGAAC+AGG + chr1_2:50192631-50192650 Msa0075120:intron 40.0%
CTGTAGGGATAAAATTGAGG+AGG + chr1_2:50192664-50192683 Msa0075120:CDS 40.0%
TTCAGGCAAAACAGACTCAT+AGG - chr1_2:50192741-50192760 None:intergenic 40.0%
GAAGACGACTTTGAATGGTT+TGG - chr1_2:50192794-50192813 None:intergenic 40.0%
CACAAGAAGACGACTTTGAA+TGG - chr1_2:50192799-50192818 None:intergenic 40.0%
! TGATGATGATGATGATGAGG+AGG + chr1_2:50192943-50192962 Msa0075120:CDS 40.0%
GAGGATGGAATTAGAGAAGA+AGG + chr1_2:50192962-50192981 Msa0075120:CDS 40.0%
GGAGTTTGAAGAAGATGGAA+TGG + chr1_2:50193000-50193019 Msa0075120:CDS 40.0%
TCATGTGTTTACTGAGGAAG+TGG + chr1_2:50193057-50193076 Msa0075120:CDS 40.0%
TCCTGTTCCTACTTGTGAAA+GGG + chr1_2:50193084-50193103 Msa0075120:CDS 40.0%
TTCACATCCCTTTCACAAGT+AGG - chr1_2:50193094-50193113 None:intergenic 40.0%
GAAAGGGATGTGAAGTCAAT+TGG + chr1_2:50193100-50193119 Msa0075120:CDS 40.0%
TGTTCATTCTGTGCTGAATC+CGG + chr1_2:50193156-50193175 Msa0075120:CDS 40.0%
GCTGAATCCGGTTGAAAATA+TGG + chr1_2:50193168-50193187 Msa0075120:CDS 40.0%
! CACTGAGCCATATTTTCAAC+CGG - chr1_2:50193178-50193197 None:intergenic 40.0%
CTAAAAGAACACCACGATCA+AGG + chr1_2:50193212-50193231 Msa0075120:CDS 40.0%
TAGTACCAACCATGATACAG+AGG + chr1_2:50193255-50193274 Msa0075120:CDS 40.0%
TGAAACCTCTGTATCATGGT+TGG - chr1_2:50193263-50193282 None:intergenic 40.0%
AGAGGTTTCATTTCGTGTCA+AGG + chr1_2:50193273-50193292 Msa0075120:CDS 40.0%
! TTGATGCTAGCCTATCGAAT+TGG + chr1_2:50193344-50193363 Msa0075120:CDS 40.0%
ATGAACCCAACCAATTCGAT+AGG - chr1_2:50193357-50193376 None:intergenic 40.0%
GACAACTACACCTGTTAACA+AGG + chr1_2:50193381-50193400 Msa0075120:CDS 40.0%
! AACAAGGCTTGTTTGTATGC+TGG + chr1_2:50193397-50193416 Msa0075120:CDS 40.0%
CAGTGATAAGCCTTGAAGAT+AGG + chr1_2:50193470-50193489 Msa0075120:CDS 40.0%
TCTTACAAGGAGACTTCCTT+GGG - chr1_2:50193552-50193571 None:intergenic 40.0%
ATCTCATCTGGACTCTTACA+AGG - chr1_2:50193565-50193584 None:intergenic 40.0%
! ATGCCGATTATAGGAACAGT+TGG + chr1_2:50193583-50193602 Msa0075120:CDS 40.0%
! TGCCGATTATAGGAACAGTT+GGG + chr1_2:50193584-50193603 Msa0075120:CDS 40.0%
GACCCAACTGTTCCTATAAT+CGG - chr1_2:50193589-50193608 None:intergenic 40.0%
TGGAATTCTAATGAGGGTTC+TGG + chr1_2:50193613-50193632 Msa0075120:CDS 40.0%
GGTTCACCTTCATCCTTTAA+AGG + chr1_2:50193634-50193653 Msa0075120:CDS 40.0%
! CTGTACTTGCTAGTTGTGTT+TGG - chr1_2:50193664-50193683 None:intergenic 40.0%
TGCAGGATAAGAAGGTGAAT+TGG + chr1_2:50193771-50193790 Msa0075120:three_prime_UTR 40.0%
!! TTCTCTAGCCTTGTCTCAAA+TGG - chr1_2:50193806-50193825 None:intergenic 40.0%
GACATTGAAGGGGTTTGAAT+AGG - chr1_2:50192089-50192108 None:intergenic 40.0%
!! AGTTGGTGAGTGACATTGAA+GGG - chr1_2:50192100-50192119 None:intergenic 40.0%
GTCTCAGATGAAGAATGAGT+TGG - chr1_2:50192117-50192136 None:intergenic 40.0%
CCATGAAATTGAAGGAGTGA+AGG - chr1_2:50192147-50192166 None:intergenic 40.0%
CCTTCACTCCTTCAATTTCA+TGG + chr1_2:50192144-50192163 Msa0075120:exon 40.0%
!! GGTTGTTTTCTTGGTTGCTT+TGG + chr1_2:50192166-50192185 Msa0075120:CDS 40.0%
!!! GTTGTGTTTTTTGGGTTTGG+AGG - chr1_2:50192194-50192213 None:intergenic 40.0%
!!! GTTGTTGCGGTTGTGTTTTT+TGG - chr1_2:50192203-50192222 None:intergenic 40.0%
TTACTTGAAGCACGTTGTTG+CGG - chr1_2:50192216-50192235 None:intergenic 40.0%
!! TTTTGCTGCTGAGAAAGCAT+TGG - chr1_2:50192343-50192362 None:intergenic 40.0%
AAAGGGACATTGTATTGCTG+TGG - chr1_2:50192444-50192463 None:intergenic 40.0%
ACAGCAATACAATGTCCCTT+TGG + chr1_2:50192443-50192462 Msa0075120:CDS 40.0%
! ATACAATGTCCCTTTGGTTC+AGG + chr1_2:50192449-50192468 Msa0075120:CDS 40.0%
!! TGAAGGAGTATGTAGGGTTT+TGG - chr1_2:50192481-50192500 None:intergenic 40.0%
GATTGTGGTGATTCTAGTGA+AGG - chr1_2:50192498-50192517 None:intergenic 40.0%
GTGTAGGGATAAAACTGAAC+AGG + chr1_2:50192631-50192650 Msa0075120:intron 40.0%
CTGTAGGGATAAAATTGAGG+AGG + chr1_2:50192664-50192683 Msa0075120:CDS 40.0%
TTCAGGCAAAACAGACTCAT+AGG - chr1_2:50192741-50192760 None:intergenic 40.0%
GAAGACGACTTTGAATGGTT+TGG - chr1_2:50192794-50192813 None:intergenic 40.0%
CACAAGAAGACGACTTTGAA+TGG - chr1_2:50192799-50192818 None:intergenic 40.0%
! TGATGATGATGATGATGAGG+AGG + chr1_2:50192943-50192962 Msa0075120:CDS 40.0%
GAGGATGGAATTAGAGAAGA+AGG + chr1_2:50192962-50192981 Msa0075120:CDS 40.0%
GGAGTTTGAAGAAGATGGAA+TGG + chr1_2:50193000-50193019 Msa0075120:CDS 40.0%
TCATGTGTTTACTGAGGAAG+TGG + chr1_2:50193057-50193076 Msa0075120:CDS 40.0%
TCCTGTTCCTACTTGTGAAA+GGG + chr1_2:50193084-50193103 Msa0075120:CDS 40.0%
TTCACATCCCTTTCACAAGT+AGG - chr1_2:50193094-50193113 None:intergenic 40.0%
GAAAGGGATGTGAAGTCAAT+TGG + chr1_2:50193100-50193119 Msa0075120:CDS 40.0%
TGTTCATTCTGTGCTGAATC+CGG + chr1_2:50193156-50193175 Msa0075120:CDS 40.0%
GCTGAATCCGGTTGAAAATA+TGG + chr1_2:50193168-50193187 Msa0075120:CDS 40.0%
! CACTGAGCCATATTTTCAAC+CGG - chr1_2:50193178-50193197 None:intergenic 40.0%
CTAAAAGAACACCACGATCA+AGG + chr1_2:50193212-50193231 Msa0075120:CDS 40.0%
TAGTACCAACCATGATACAG+AGG + chr1_2:50193255-50193274 Msa0075120:CDS 40.0%
TGAAACCTCTGTATCATGGT+TGG - chr1_2:50193263-50193282 None:intergenic 40.0%
AGAGGTTTCATTTCGTGTCA+AGG + chr1_2:50193273-50193292 Msa0075120:CDS 40.0%
! TTGATGCTAGCCTATCGAAT+TGG + chr1_2:50193344-50193363 Msa0075120:CDS 40.0%
ATGAACCCAACCAATTCGAT+AGG - chr1_2:50193357-50193376 None:intergenic 40.0%
GACAACTACACCTGTTAACA+AGG + chr1_2:50193381-50193400 Msa0075120:CDS 40.0%
! AACAAGGCTTGTTTGTATGC+TGG + chr1_2:50193397-50193416 Msa0075120:CDS 40.0%
CAGTGATAAGCCTTGAAGAT+AGG + chr1_2:50193470-50193489 Msa0075120:CDS 40.0%
TCTTACAAGGAGACTTCCTT+GGG - chr1_2:50193552-50193571 None:intergenic 40.0%
ATCTCATCTGGACTCTTACA+AGG - chr1_2:50193565-50193584 None:intergenic 40.0%
! ATGCCGATTATAGGAACAGT+TGG + chr1_2:50193583-50193602 Msa0075120:CDS 40.0%
! TGCCGATTATAGGAACAGTT+GGG + chr1_2:50193584-50193603 Msa0075120:CDS 40.0%
GACCCAACTGTTCCTATAAT+CGG - chr1_2:50193589-50193608 None:intergenic 40.0%
TGGAATTCTAATGAGGGTTC+TGG + chr1_2:50193613-50193632 Msa0075120:CDS 40.0%
GGTTCACCTTCATCCTTTAA+AGG + chr1_2:50193634-50193653 Msa0075120:CDS 40.0%
! CTGTACTTGCTAGTTGTGTT+TGG - chr1_2:50193664-50193683 None:intergenic 40.0%
TGCAGGATAAGAAGGTGAAT+TGG + chr1_2:50193771-50193790 Msa0075120:three_prime_UTR 40.0%
!! TTCTCTAGCCTTGTCTCAAA+TGG - chr1_2:50193806-50193825 None:intergenic 40.0%
! GTTGGTGAGTGACATTGAAG+GGG - chr1_2:50192099-50192118 None:intergenic 45.0%
!! GAGTTGGTGAGTGACATTGA+AGG - chr1_2:50192101-50192120 None:intergenic 45.0%
!!! GCGGTTGTGTTTTTTGGGTT+TGG - chr1_2:50192197-50192216 None:intergenic 45.0%
TGGAGTGATCCTGAACCAAA+GGG - chr1_2:50192461-50192480 None:intergenic 45.0%
TTGGAGTGATCCTGAACCAA+AGG - chr1_2:50192462-50192481 None:intergenic 45.0%
AACAGGAACTTGGTTGCTGT+AGG + chr1_2:50192648-50192667 Msa0075120:CDS 45.0%
ACAGGAACTTGGTTGCTGTA+GGG + chr1_2:50192649-50192668 Msa0075120:CDS 45.0%
! GAGTCTGTTTTGCCTGAAGA+AGG + chr1_2:50192743-50192762 Msa0075120:CDS 45.0%
! TCTGTTTTGCCTGAAGAAGG+TGG + chr1_2:50192746-50192765 Msa0075120:CDS 45.0%
! TCCTCTTTTCCACCTTCTTC+AGG - chr1_2:50192758-50192777 None:intergenic 45.0%
TGAAGAAGGTGGAAAAGAGG+AGG + chr1_2:50192757-50192776 Msa0075120:CDS 45.0%
TCTGTGACTTCGACTTCAAC+TGG + chr1_2:50192830-50192849 Msa0075120:CDS 45.0%
CTGTGACTTCGACTTCAACT+GGG + chr1_2:50192831-50192850 Msa0075120:CDS 45.0%
GGTCTTACCCTCCTAATCAT+AGG + chr1_2:50192852-50192871 Msa0075120:CDS 45.0%
! GATGATGATGATGAGGAGGA+TGG + chr1_2:50192947-50192966 Msa0075120:CDS 45.0%
AGAAGGTGATGAATTGGGTG+TGG + chr1_2:50192979-50192998 Msa0075120:CDS 45.0%
GGTGTGGAGTTTGAAGAAGA+TGG + chr1_2:50192995-50193014 Msa0075120:CDS 45.0%
TGGGATACTCGAAGTTGAGA+AGG + chr1_2:50193020-50193039 Msa0075120:CDS 45.0%
GGGATACTCGAAGTTGAGAA+GGG + chr1_2:50193021-50193040 Msa0075120:CDS 45.0%
GGATACTCGAAGTTGAGAAG+GGG + chr1_2:50193022-50193041 Msa0075120:CDS 45.0%
GTCCTGTTCCTACTTGTGAA+AGG + chr1_2:50193083-50193102 Msa0075120:CDS 45.0%
TCCCTTTCACAAGTAGGAAC+AGG - chr1_2:50193088-50193107 None:intergenic 45.0%
CGGTTGAAAATATGGCTCAG+TGG + chr1_2:50193176-50193195 Msa0075120:CDS 45.0%
GGCTCAGTGGAAAGTTGTTA+AGG + chr1_2:50193189-50193208 Msa0075120:CDS 45.0%
TCGTGTCAAGGAAATTTCGG+AGG + chr1_2:50193285-50193304 Msa0075120:CDS 45.0%
! GTTCAACTTCTTTGGTGTGC+CGG - chr1_2:50193311-50193330 None:intergenic 45.0%
CACACCAAAGAAGTTGAACC+AGG + chr1_2:50193312-50193331 Msa0075120:CDS 45.0%
TAGCATCAACTGGGATTTCC+TGG - chr1_2:50193333-50193352 None:intergenic 45.0%
TCGATAGGCTAGCATCAACT+GGG - chr1_2:50193342-50193361 None:intergenic 45.0%
TTCGATAGGCTAGCATCAAC+TGG - chr1_2:50193343-50193362 None:intergenic 45.0%
! TGCTAGCCTATCGAATTGGT+TGG + chr1_2:50193348-50193367 Msa0075120:CDS 45.0%
! GCTAGCCTATCGAATTGGTT+GGG + chr1_2:50193349-50193368 Msa0075120:CDS 45.0%
TCGAATTGGTTGGGTTCATC+CGG + chr1_2:50193358-50193377 Msa0075120:CDS 45.0%
GTTAACAGGTGTAGTTGTCC+CGG - chr1_2:50193380-50193399 None:intergenic 45.0%
! AAGGCTTGTTTGTATGCTGG+TGG + chr1_2:50193400-50193419 Msa0075120:CDS 45.0%
TGTTGTGAGATGCTCCTATC+AGG - chr1_2:50193439-50193458 None:intergenic 45.0%
!! GATAGGAGCATCTCACAACA+AGG + chr1_2:50193439-50193458 Msa0075120:CDS 45.0%
CTTACAAGGAGACTTCCTTG+GGG - chr1_2:50193551-50193570 None:intergenic 45.0%
CTCTTACAAGGAGACTTCCT+TGG - chr1_2:50193553-50193572 None:intergenic 45.0%
CCTATAATCGGCATCTCATC+TGG - chr1_2:50193577-50193596 None:intergenic 45.0%
! CCAGATGAGATGCCGATTAT+AGG + chr1_2:50193574-50193593 Msa0075120:CDS 45.0%
TAGGAACAGTTGGGTCCTAT+TGG + chr1_2:50193593-50193612 Msa0075120:CDS 45.0%
CACAACTAGCAAGTACAGAG+AGG + chr1_2:50193666-50193685 Msa0075120:CDS 45.0%
GGATATTTAACTGGCTGTGC+AGG + chr1_2:50193754-50193773 Msa0075120:three_prime_UTR 45.0%
! ATGCTACGCCATTTGAGACA+AGG + chr1_2:50193795-50193814 Msa0075120:three_prime_UTR 45.0%
AATAGAGATGCTGCAGAAGC+TGG + chr1_2:50193833-50193852 Msa0075120:three_prime_UTR 45.0%
AGTGTCCTAAGCAAGTAGCT+CGG - chr1_2:50193986-50194005 None:intergenic 45.0%
! GTTGGTGAGTGACATTGAAG+GGG - chr1_2:50192099-50192118 None:intergenic 45.0%
!! GAGTTGGTGAGTGACATTGA+AGG - chr1_2:50192101-50192120 None:intergenic 45.0%
!!! GCGGTTGTGTTTTTTGGGTT+TGG - chr1_2:50192197-50192216 None:intergenic 45.0%
TGGAGTGATCCTGAACCAAA+GGG - chr1_2:50192461-50192480 None:intergenic 45.0%
TTGGAGTGATCCTGAACCAA+AGG - chr1_2:50192462-50192481 None:intergenic 45.0%
AACAGGAACTTGGTTGCTGT+AGG + chr1_2:50192648-50192667 Msa0075120:CDS 45.0%
ACAGGAACTTGGTTGCTGTA+GGG + chr1_2:50192649-50192668 Msa0075120:CDS 45.0%
! GAGTCTGTTTTGCCTGAAGA+AGG + chr1_2:50192743-50192762 Msa0075120:CDS 45.0%
! TCTGTTTTGCCTGAAGAAGG+TGG + chr1_2:50192746-50192765 Msa0075120:CDS 45.0%
! TCCTCTTTTCCACCTTCTTC+AGG - chr1_2:50192758-50192777 None:intergenic 45.0%
TGAAGAAGGTGGAAAAGAGG+AGG + chr1_2:50192757-50192776 Msa0075120:CDS 45.0%
TCTGTGACTTCGACTTCAAC+TGG + chr1_2:50192830-50192849 Msa0075120:CDS 45.0%
CTGTGACTTCGACTTCAACT+GGG + chr1_2:50192831-50192850 Msa0075120:CDS 45.0%
GGTCTTACCCTCCTAATCAT+AGG + chr1_2:50192852-50192871 Msa0075120:CDS 45.0%
! GATGATGATGATGAGGAGGA+TGG + chr1_2:50192947-50192966 Msa0075120:CDS 45.0%
AGAAGGTGATGAATTGGGTG+TGG + chr1_2:50192979-50192998 Msa0075120:CDS 45.0%
GGTGTGGAGTTTGAAGAAGA+TGG + chr1_2:50192995-50193014 Msa0075120:CDS 45.0%
TGGGATACTCGAAGTTGAGA+AGG + chr1_2:50193020-50193039 Msa0075120:CDS 45.0%
GGGATACTCGAAGTTGAGAA+GGG + chr1_2:50193021-50193040 Msa0075120:CDS 45.0%
GGATACTCGAAGTTGAGAAG+GGG + chr1_2:50193022-50193041 Msa0075120:CDS 45.0%
GTCCTGTTCCTACTTGTGAA+AGG + chr1_2:50193083-50193102 Msa0075120:CDS 45.0%
TCCCTTTCACAAGTAGGAAC+AGG - chr1_2:50193088-50193107 None:intergenic 45.0%
CGGTTGAAAATATGGCTCAG+TGG + chr1_2:50193176-50193195 Msa0075120:CDS 45.0%
GGCTCAGTGGAAAGTTGTTA+AGG + chr1_2:50193189-50193208 Msa0075120:CDS 45.0%
TCGTGTCAAGGAAATTTCGG+AGG + chr1_2:50193285-50193304 Msa0075120:CDS 45.0%
! GTTCAACTTCTTTGGTGTGC+CGG - chr1_2:50193311-50193330 None:intergenic 45.0%
CACACCAAAGAAGTTGAACC+AGG + chr1_2:50193312-50193331 Msa0075120:CDS 45.0%
TAGCATCAACTGGGATTTCC+TGG - chr1_2:50193333-50193352 None:intergenic 45.0%
TCGATAGGCTAGCATCAACT+GGG - chr1_2:50193342-50193361 None:intergenic 45.0%
TTCGATAGGCTAGCATCAAC+TGG - chr1_2:50193343-50193362 None:intergenic 45.0%
! TGCTAGCCTATCGAATTGGT+TGG + chr1_2:50193348-50193367 Msa0075120:CDS 45.0%
! GCTAGCCTATCGAATTGGTT+GGG + chr1_2:50193349-50193368 Msa0075120:CDS 45.0%
TCGAATTGGTTGGGTTCATC+CGG + chr1_2:50193358-50193377 Msa0075120:CDS 45.0%
GTTAACAGGTGTAGTTGTCC+CGG - chr1_2:50193380-50193399 None:intergenic 45.0%
! AAGGCTTGTTTGTATGCTGG+TGG + chr1_2:50193400-50193419 Msa0075120:CDS 45.0%
TGTTGTGAGATGCTCCTATC+AGG - chr1_2:50193439-50193458 None:intergenic 45.0%
!! GATAGGAGCATCTCACAACA+AGG + chr1_2:50193439-50193458 Msa0075120:CDS 45.0%
CTTACAAGGAGACTTCCTTG+GGG - chr1_2:50193551-50193570 None:intergenic 45.0%
CTCTTACAAGGAGACTTCCT+TGG - chr1_2:50193553-50193572 None:intergenic 45.0%
CCTATAATCGGCATCTCATC+TGG - chr1_2:50193577-50193596 None:intergenic 45.0%
! CCAGATGAGATGCCGATTAT+AGG + chr1_2:50193574-50193593 Msa0075120:CDS 45.0%
TAGGAACAGTTGGGTCCTAT+TGG + chr1_2:50193593-50193612 Msa0075120:CDS 45.0%
CACAACTAGCAAGTACAGAG+AGG + chr1_2:50193666-50193685 Msa0075120:CDS 45.0%
GGATATTTAACTGGCTGTGC+AGG + chr1_2:50193754-50193773 Msa0075120:three_prime_UTR 45.0%
! ATGCTACGCCATTTGAGACA+AGG + chr1_2:50193795-50193814 Msa0075120:three_prime_UTR 45.0%
AATAGAGATGCTGCAGAAGC+TGG + chr1_2:50193833-50193852 Msa0075120:three_prime_UTR 45.0%
AGTGTCCTAAGCAAGTAGCT+CGG - chr1_2:50193986-50194005 None:intergenic 45.0%
!! ATTTAATAATAATATTATTG+CGG + chr1_2:50192024-50192043 Msa0075120:five_prime_UTR 5.0%
!! ATTTAATAATAATATTATTG+CGG + chr1_2:50192024-50192043 Msa0075120:five_prime_UTR 5.0%
GCCTGAAGAAGGTGGAAAAG+AGG + chr1_2:50192754-50192773 Msa0075120:CDS 50.0%
AGGTGGAAAAGAGGAGGCTT+TGG + chr1_2:50192763-50192782 Msa0075120:CDS 50.0%
!! TCTTTCTGAGGCCTTGATCG+TGG - chr1_2:50193226-50193245 None:intergenic 50.0%
GTCAAGGAAATTTCGGAGGC+CGG + chr1_2:50193289-50193308 Msa0075120:CDS 50.0%
CGAATTGGTTGGGTTCATCC+GGG + chr1_2:50193359-50193378 Msa0075120:CDS 50.0%
GCTTGTTTGTATGCTGGTGG+TGG + chr1_2:50193403-50193422 Msa0075120:CDS 50.0%
!! TTGTATGCTGGTGGTGGCAT+CGG + chr1_2:50193409-50193428 Msa0075120:CDS 50.0%
ACTGGCTGTGCAGGATAAGA+AGG + chr1_2:50193763-50193782 Msa0075120:three_prime_UTR 50.0%
ACCAACCGAGCTACTTGCTT+AGG + chr1_2:50193978-50193997 Msa0075120:three_prime_UTR 50.0%
TCCTAAGCAAGTAGCTCGGT+TGG - chr1_2:50193982-50194001 None:intergenic 50.0%
GCCTGAAGAAGGTGGAAAAG+AGG + chr1_2:50192754-50192773 Msa0075120:CDS 50.0%
AGGTGGAAAAGAGGAGGCTT+TGG + chr1_2:50192763-50192782 Msa0075120:CDS 50.0%
!! TCTTTCTGAGGCCTTGATCG+TGG - chr1_2:50193226-50193245 None:intergenic 50.0%
GTCAAGGAAATTTCGGAGGC+CGG + chr1_2:50193289-50193308 Msa0075120:CDS 50.0%
CGAATTGGTTGGGTTCATCC+GGG + chr1_2:50193359-50193378 Msa0075120:CDS 50.0%
GCTTGTTTGTATGCTGGTGG+TGG + chr1_2:50193403-50193422 Msa0075120:CDS 50.0%
!! TTGTATGCTGGTGGTGGCAT+CGG + chr1_2:50193409-50193428 Msa0075120:CDS 50.0%
ACTGGCTGTGCAGGATAAGA+AGG + chr1_2:50193763-50193782 Msa0075120:three_prime_UTR 50.0%
ACCAACCGAGCTACTTGCTT+AGG + chr1_2:50193978-50193997 Msa0075120:three_prime_UTR 50.0%
TCCTAAGCAAGTAGCTCGGT+TGG - chr1_2:50193982-50194001 None:intergenic 50.0%
!! GTGGCATCGGTACTCCTGAT+AGG + chr1_2:50193422-50193441 Msa0075120:CDS 55.0%
TTTCCGCTACATCGTCCCCA+AGG + chr1_2:50193533-50193552 Msa0075120:CDS 55.0%
CTTCCTTGGGGACGATGTAG+CGG - chr1_2:50193539-50193558 None:intergenic 55.0%
GTGAGCAGGGACACCAAAAG+AGG - chr1_2:50193960-50193979 None:intergenic 55.0%
!! AGTAGCTCGGTTGGTGAGCA+GGG - chr1_2:50193973-50193992 None:intergenic 55.0%
!! AAGTAGCTCGGTTGGTGAGC+AGG - chr1_2:50193974-50193993 None:intergenic 55.0%
!! GTGGCATCGGTACTCCTGAT+AGG + chr1_2:50193422-50193441 Msa0075120:CDS 55.0%
TTTCCGCTACATCGTCCCCA+AGG + chr1_2:50193533-50193552 Msa0075120:CDS 55.0%
CTTCCTTGGGGACGATGTAG+CGG - chr1_2:50193539-50193558 None:intergenic 55.0%
GTGAGCAGGGACACCAAAAG+AGG - chr1_2:50193960-50193979 None:intergenic 55.0%
!! AGTAGCTCGGTTGGTGAGCA+GGG - chr1_2:50193973-50193992 None:intergenic 55.0%
!! AAGTAGCTCGGTTGGTGAGC+AGG - chr1_2:50193974-50193993 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50191971 50194239 50191971 ID=Msa0075120;Name=Msa0075120
chr1_2 mRNA 50191971 50194239 50191971 ID=Msa0075120-mRNA-1;Parent=Msa0075120;Name=Msa0075120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|3|537|411
chr1_2 exon 50191971 50192231 50191971 ID=Msa0075120-mRNA-1:exon:15442;Parent=Msa0075120-mRNA-1
chr1_2 exon 50192420 50192520 50192420 ID=Msa0075120-mRNA-1:exon:15443;Parent=Msa0075120-mRNA-1
chr1_2 exon 50192637 50194239 50192637 ID=Msa0075120-mRNA-1:exon:15444;Parent=Msa0075120-mRNA-1
chr1_2 five_prime_UTR 50191971 50192162 50191971 ID=Msa0075120-mRNA-1:five_prime_utr;Parent=Msa0075120-mRNA-1
chr1_2 CDS 50192163 50192231 50192163 ID=Msa0075120-mRNA-1:cds;Parent=Msa0075120-mRNA-1
chr1_2 CDS 50192420 50192520 50192420 ID=Msa0075120-mRNA-1:cds;Parent=Msa0075120-mRNA-1
chr1_2 CDS 50192637 50193702 50192637 ID=Msa0075120-mRNA-1:cds;Parent=Msa0075120-mRNA-1
chr1_2 three_prime_UTR 50193703 50194239 50193703 ID=Msa0075120-mRNA-1:three_prime_utr;Parent=Msa0075120-mRNA-1
Gene Sequence

>Msa0075120

ATGGGTTGTTTTCTTGGTTGCTTTGGTTCCTCCAAACCCAAAAAACACAACCGCAACAACGTGCTTCAAAGAGATGCTAATAGTAGCAAGCCACAGCAATACAATGTCCCTTTGGTTCAGGATCACTCCAAAACCCTACATACTCCTTCACTAGAATCACCACAATCACAGGATAAAACTGAACAGGAACTTGGTTGCTGTAGGGATAAAATTGAGGAGGAACTAAGTGTTACTGTTAGAAAGAAAGTAACTTTTGACTCCAATGTGAAAACCTATGAGTCTGTTTTGCCTGAAGAAGGTGGAAAAGAGGAGGCTTTGGCTGAACCAAACCATTCAAAGTCGTCTTCTTGTGAAGATAGTAGTTCTGTGACTTCGACTTCAACTGGGTCTTACCCTCCTAATCATAGGTATCAGAATTGTAGGGACAGTGATGATGAAGAAGAAGAAGTACTTGATGATTGGGCTAGTGATCTTAGTGATGATGATGATGATGAGGAGGATGGAATTAGAGAAGAAGGTGATGAATTGGGTGTGGAGTTTGAAGAAGATGGAATGGGATACTCGAAGTTGAGAAGGGGTGATATTATTGATCATGTGTTTACTGAGGAAGTGGAGAGTCCTGTTCCTACTTGTGAAAGGGATGTGAAGTCAATTGGAGTCAATTTCAATGCTAGGGACAGAAGTGTTTATGTTCATTCTGTGCTGAATCCGGTTGAAAATATGGCTCAGTGGAAAGTTGTTAAGGCTAAAAGAACACCACGATCAAGGCCTCAGAAAGAGAATTTTGTTAGTACCAACCATGATACAGAGGTTTCATTTCGTGTCAAGGAAATTTCGGAGGCCGGCACACCAAAGAAGTTGAACCAGGAAATCCCAGTTGATGCTAGCCTATCGAATTGGTTGGGTTCATCCGGGACAACTACACCTGTTAACAAGGCTTGTTTGTATGCTGGTGGTGGCATCGGTACTCCTGATAGGAGCATCTCACAACAAGGTTCAAATTCAGTGATAAGCCTTGAAGATAGGCCTATTTTAGGTGCTTTAACGGTGGAAGAGATTAAGCAATTTTCCGCTACATCGTCCCCAAGGAAGTCTCCTTGTAAGAGTCCAGATGAGATGCCGATTATAGGAACAGTTGGGTCCTATTGGAATTCTAATGAGGGTTCTGGTTCACCTTCATCCTTTAAAGGAATTCCAAACACAACTAGCAAGTACAGAGAGGTAAAGACGAAGTGA
Protein sequence

>Msa0075120

MGCFLGCFGSSKPKKHNRNNVLQRDANSSKPQQYNVPLVQDHSKTLHTPSLESPQSQDKTEQELGCCRDKIEEELSVTVRKKVTFDSNVKTYESVLPEEGGKEEALAEPNHSKSSSCEDSSSVTSTSTGSYPPNHRYQNCRDSDDEEEEVLDDWASDLSDDDDDEEDGIREEGDELGVEFEEDGMGYSKLRRGDIIDHVFTEEVESPVPTCERDVKSIGVNFNARDRSVYVHSVLNPVENMAQWKVVKAKRTPRSRPQKENFVSTNHDTEVSFRVKEISEAGTPKKLNQEIPVDASLSNWLGSSGTTTPVNKACLYAGGGIGTPDRSISQQGSNSVISLEDRPILGALTVEEIKQFSATSSPRKSPCKSPDEMPIIGTVGSYWNSNEGSGSPSSFKGIPNTTSKYREVKTK*