Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167790 | RHN80033.1 | 98.246 | 171 | 3 | 0 | 1 | 171 | 453 | 623 | 2.32e-119 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167790 | sp|Q6Q1P4|SMC1_ARATH | 90.058 | 171 | 17 | 0 | 1 | 171 | 1048 | 1218 | 2.35e-107 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167790 | A0A396JUN8 | 98.246 | 171 | 3 | 0 | 1 | 171 | 453 | 623 | 1.11e-119 | 360 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0167790 | Msa0606720 | 0.810379 | 1.187143e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167790 | MtrunA17_Chr1g0183871 | 98.246 | 171 | 3 | 0 | 1 | 171 | 453 | 623 | 2.14e-123 | 360 |
| Msa0167790 | MtrunA17_Chr4g0020351 | 79.532 | 171 | 35 | 0 | 1 | 171 | 1038 | 1208 | 3.12e-90 | 285 |
| Msa0167790 | MtrunA17_Chr8g0370091 | 35.366 | 164 | 85 | 4 | 1 | 164 | 1080 | 1222 | 4.95e-31 | 117 |
| Msa0167790 | MtrunA17_Chr7g0257431 | 36.691 | 139 | 73 | 3 | 26 | 164 | 4 | 127 | 3.52e-30 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167790 | AT3G54670.1 | 90.058 | 171 | 17 | 0 | 1 | 171 | 1048 | 1218 | 2.38e-108 | 335 |
| Msa0167790 | AT5G48600.1 | 34.146 | 164 | 87 | 4 | 1 | 164 | 1087 | 1229 | 2.35e-29 | 113 |
| Msa0167790 | AT5G48600.2 | 34.146 | 164 | 87 | 4 | 1 | 164 | 1090 | 1232 | 2.64e-29 | 113 |
| Msa0167790 | AT2G27170.2 | 35.849 | 106 | 57 | 2 | 59 | 164 | 1096 | 1190 | 7.33e-11 | 60.5 |
| Msa0167790 | AT2G27170.1 | 35.849 | 106 | 57 | 2 | 59 | 164 | 1096 | 1190 | 7.33e-11 | 60.5 |
Find 60 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGGCCGTTTGACTTAA+AGG | 0.208660 | 1_4:-49828268 | None:intergenic |
| GCCTCCTTTATTGTGTAAAT+AGG | 0.262281 | 1_4:+49828074 | Msa0167790:three_prime_UTR |
| AAGCGTTAGTTGGGGTTTAC+AGG | 0.284648 | 1_4:+49827707 | Msa0167790:CDS |
| TGGAACAGCATACCTAAATT+TGG | 0.296683 | 1_4:+49825886 | Msa0167790:CDS |
| TATCTATATTACCAGCGATA+TGG | 0.316547 | 1_4:-49825820 | None:intergenic |
| CATTTGATCTACTCAAATAT+CGG | 0.334788 | 1_4:+49827905 | Msa0167790:CDS |
| TTGAATGTTGCAAAGGTTGC+TGG | 0.339404 | 1_4:+49827571 | Msa0167790:CDS |
| AATTCCTATTTACACAATAA+AGG | 0.349475 | 1_4:-49828078 | None:intergenic |
| CAGGATGCTGATGCCGGATC+TGG | 0.418635 | 1_4:+49827634 | Msa0167790:CDS |
| TACTTCATGCCATGTAGAAA+TGG | 0.419004 | 1_4:-49825923 | None:intergenic |
| ACAAAGCTGAAGCGTTAGTT+GGG | 0.423474 | 1_4:+49827698 | Msa0167790:CDS |
| TGAAGGAGCAAGGACTAATC+AGG | 0.426310 | 1_4:+49827615 | Msa0167790:CDS |
| ATGTCGCGGAACCGCTTTGT+TGG | 0.437758 | 1_4:-49825959 | None:intergenic |
| AAAGAGCAACACACATCCTC+TGG | 0.440601 | 1_4:+49825862 | Msa0167790:CDS |
| ATGCAGATATGATTTGTTCA+TGG | 0.443391 | 1_4:+49825787 | None:intergenic |
| TGCTTTCGATGTACAGAGCT+CGG | 0.445382 | 1_4:+49827966 | Msa0167790:three_prime_UTR |
| CGCGACATGGAACAACTATC+TGG | 0.448520 | 1_4:+49825974 | Msa0167790:CDS |
| GACAAAGCTGAAGCGTTAGT+TGG | 0.453493 | 1_4:+49827697 | Msa0167790:CDS |
| CATTCCTCCTTTAAGTCAAA+CGG | 0.473183 | 1_4:+49828261 | Msa0167790:three_prime_UTR |
| TCGCGGAACCGCTTTGTTGG+TGG | 0.475592 | 1_4:-49825956 | None:intergenic |
| TACACAATAAAGGAGGCAAC+TGG | 0.504463 | 1_4:-49828068 | None:intergenic |
| ATTTGATCTACTCAAATATC+GGG | 0.504495 | 1_4:+49827906 | Msa0167790:CDS |
| CGTTGCTGTTCTCCATCCAC+AGG | 0.511915 | 1_4:+49826023 | Msa0167790:CDS |
| CTGGTAATTTAAACACAAGA+TGG | 0.518576 | 1_4:-49828049 | None:intergenic |
| AACAAAGCGGTTCCGCGACA+TGG | 0.521116 | 1_4:+49825961 | Msa0167790:CDS |
| GCTTTCGATGTACAGAGCTC+GGG | 0.524703 | 1_4:+49827967 | Msa0167790:three_prime_UTR |
| ACTAATCAGGATGCTGATGC+CGG | 0.528971 | 1_4:+49827628 | Msa0167790:CDS |
| TTAAACACAAGATGGACAAG+AGG | 0.531169 | 1_4:-49828041 | None:intergenic |
| GAGTCCTAAAATTCATCCAT+TGG | 0.534372 | 1_4:+49827928 | Msa0167790:exon |
| AATACTCTGAAAACCAGATC+CGG | 0.539223 | 1_4:-49827647 | None:intergenic |
| CAAAATCTTGTGAAGGAGCA+AGG | 0.545040 | 1_4:+49827605 | Msa0167790:CDS |
| GGATGAAGTTGATGCTGCAT+TGG | 0.545341 | 1_4:+49827543 | Msa0167790:CDS |
| ATTCGTTCAAAATCTTGTGA+AGG | 0.547590 | 1_4:+49827598 | Msa0167790:CDS |
| GTTTACAGGGACTCTGAAAG+AGG | 0.559697 | 1_4:+49827721 | Msa0167790:CDS |
| AGCGTTAGTTGGGGTTTACA+GGG | 0.560955 | 1_4:+49827708 | Msa0167790:CDS |
| GCATCTAATCATCTACTATG+AGG | 0.563624 | 1_4:-49828106 | None:intergenic |
| CAAATAACTCTACCTGTGGA+TGG | 0.565775 | 1_4:-49826035 | None:intergenic |
| AGCACTTCTAGTGAAGGAAA+AGG | 0.573929 | 1_4:-49828128 | None:intergenic |
| GAGGCTTTCAACCATATCGC+TGG | 0.578366 | 1_4:+49825809 | Msa0167790:CDS |
| TAAACACAAGATGGACAAGA+GGG | 0.578613 | 1_4:-49828040 | None:intergenic |
| AAGTGCTTTGTAGCTAGACT+AGG | 0.580578 | 1_4:+49828144 | Msa0167790:three_prime_UTR |
| CTACAAAGCACTTCTAGTGA+AGG | 0.581894 | 1_4:-49828134 | None:intergenic |
| AATGTATATTATGTATCCAA+TGG | 0.595485 | 1_4:-49827944 | None:intergenic |
| GGACAACTTGAATGTTGCAA+AGG | 0.602237 | 1_4:+49827564 | Msa0167790:CDS |
| AAGAGCAACACACATCCTCT+GGG | 0.604669 | 1_4:+49825863 | Msa0167790:CDS |
| CAGATATGATTTGTTCATGG+AGG | 0.608916 | 1_4:+49825790 | None:intergenic |
| CTAGGTGGCAGAATATCTGT+TGG | 0.609320 | 1_4:+49828162 | Msa0167790:three_prime_UTR |
| TCCTATTTACACAATAAAGG+AGG | 0.611359 | 1_4:-49828075 | None:intergenic |
| CAAAGCTGAAGCGTTAGTTG+GGG | 0.618753 | 1_4:+49827699 | Msa0167790:CDS |
| CAGATAGTTGTTCCATGTCG+CGG | 0.630799 | 1_4:-49825973 | None:intergenic |
| TTTACAGGGACTCTGAAAGA+GGG | 0.636295 | 1_4:+49827722 | Msa0167790:CDS |
| GAAGACGATCCATTTCTACA+TGG | 0.649820 | 1_4:+49825914 | Msa0167790:CDS |
| AGGTATGCTGTTCCACCCAG+AGG | 0.651199 | 1_4:-49825878 | None:intergenic |
| TGCTTTGTAGCTAGACTAGG+TGG | 0.661463 | 1_4:+49828147 | Msa0167790:three_prime_UTR |
| ATGGCCGTTTGACTTAAAGG+AGG | 0.665569 | 1_4:-49828265 | None:intergenic |
| GACATGGAACAACTATCTGG+CGG | 0.679578 | 1_4:+49825977 | Msa0167790:CDS |
| ATATTACGAATACTAAGTCG+TGG | 0.684362 | 1_4:-49828219 | None:intergenic |
| CTGCTATGCCACCAACAAAG+CGG | 0.697445 | 1_4:+49825948 | Msa0167790:CDS |
| AGCAACACACATCCTCTGGG+TGG | 0.698547 | 1_4:+49825866 | Msa0167790:CDS |
| AAACACAAGATGGACAAGAG+GGG | 0.745105 | 1_4:-49828039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATTTATTACTTTATA+CGG | - | chr1_4:49827194-49827213 | None:intergenic | 10.0% |
| !!! | TTTTTTACCTTTATTCATAA+AGG | + | chr1_4:49826122-49826141 | Msa0167790:intron | 15.0% |
| !!! | TTTTTACCTTTATTCATAAA+GGG | + | chr1_4:49826123-49826142 | Msa0167790:intron | 15.0% |
| !!! | AAATTTTTAATACGTATTTG+TGG | + | chr1_4:49826717-49826736 | Msa0167790:intron | 15.0% |
| !!! | ATGGATTAAATCTATTTATT+TGG | - | chr1_4:49827051-49827070 | None:intergenic | 15.0% |
| !!! | TTGAACAATAATATTTTAGA+TGG | + | chr1_4:49827370-49827389 | Msa0167790:intron | 15.0% |
| !! | TTAGAAAAAGAAGTTATAAC+CGG | - | chr1_4:49826214-49826233 | None:intergenic | 20.0% |
| !!! | GGAATTTTATAAGAACATTT+GGG | - | chr1_4:49826300-49826319 | None:intergenic | 20.0% |
| !!! | TGGAATTTTATAAGAACATT+TGG | - | chr1_4:49826301-49826320 | None:intergenic | 20.0% |
| !! | AATATACATGGTTATAATCA+AGG | + | chr1_4:49826691-49826710 | Msa0167790:intron | 20.0% |
| !! | AATGTGAAGTTAAAGAATAA+AGG | + | chr1_4:49826866-49826885 | Msa0167790:intron | 20.0% |
| !!! | TTAGATGGTTGTTTAAATTT+TGG | + | chr1_4:49827385-49827404 | Msa0167790:intron | 20.0% |
| !!! | TAGATGGTTGTTTAAATTTT+GGG | + | chr1_4:49827386-49827405 | Msa0167790:intron | 20.0% |
| !!! | TTGCTTATATTTTCAGTTTT+AGG | + | chr1_4:49827500-49827519 | Msa0167790:intron | 20.0% |
| !!! | GTATTTTTTTCCTTTACAAT+AGG | + | chr1_4:49827780-49827799 | Msa0167790:intron | 20.0% |
| !! | AATGTATATTATGTATCCAA+TGG | - | chr1_4:49827947-49827966 | None:intergenic | 20.0% |
| !!! | CAGTTTTATTTCTTGTTTAA+TGG | + | chr1_4:49827993-49828012 | Msa0167790:three_prime_UTR | 20.0% |
| !! | AATTCCTATTTACACAATAA+AGG | - | chr1_4:49828081-49828100 | None:intergenic | 20.0% |
| !! | TTTTAAATGGGACCATATTA+GGG | - | chr1_4:49826152-49826171 | None:intergenic | 25.0% |
| !! | TTTTTAAATGGGACCATATT+AGG | - | chr1_4:49826153-49826172 | None:intergenic | 25.0% |
| ! | TAATATGGTCCCATTTAAAA+AGG | + | chr1_4:49826152-49826171 | Msa0167790:intron | 25.0% |
| ! | CAGAAAAAAGGGAATAAAAT+TGG | - | chr1_4:49826249-49826268 | None:intergenic | 25.0% |
| ! | GAAAATTGTAGCAGAAAAAA+GGG | - | chr1_4:49826260-49826279 | None:intergenic | 25.0% |
| ! | AGAAAATTGTAGCAGAAAAA+AGG | - | chr1_4:49826261-49826280 | None:intergenic | 25.0% |
| ! | GAAGATTATTTATAACACGT+AGG | + | chr1_4:49826657-49826676 | Msa0167790:intron | 25.0% |
| ! | GACTCATAGAATAATATACA+TGG | + | chr1_4:49826679-49826698 | Msa0167790:intron | 25.0% |
| ! | TTAATACGTATTTGTGGTTT+AGG | + | chr1_4:49826723-49826742 | Msa0167790:intron | 25.0% |
| ! | TAATACGTATTTGTGGTTTA+GGG | + | chr1_4:49826724-49826743 | Msa0167790:intron | 25.0% |
| ! | CATGTGAAGTTAAAGAATAA+AGG | + | chr1_4:49826824-49826843 | Msa0167790:intron | 25.0% |
| !! | CATAACAAGTAAAAGTTTTC+TGG | + | chr1_4:49826913-49826932 | Msa0167790:intron | 25.0% |
| ! | AGAAAACAAGGTAAAAACAA+TGG | - | chr1_4:49827307-49827326 | None:intergenic | 25.0% |
| !! | ATCTTTGAAAACAGAAAACA+AGG | - | chr1_4:49827319-49827338 | None:intergenic | 25.0% |
| ! | TTTGCCTAAAAATAGTTTGA+TGG | + | chr1_4:49827441-49827460 | Msa0167790:intron | 25.0% |
| !!! | ATCTCCATCAAACTATTTTT+AGG | - | chr1_4:49827448-49827467 | None:intergenic | 25.0% |
| ! | AAAATAGTTTGATGGAGATT+TGG | + | chr1_4:49827449-49827468 | Msa0167790:intron | 25.0% |
| ! | AAACTGAAAATATAAGCAAG+TGG | - | chr1_4:49827499-49827518 | None:intergenic | 25.0% |
| !!! | CTGCATATTTTAAAGAAACT+AGG | - | chr1_4:49827838-49827857 | None:intergenic | 25.0% |
| ! | CATTTGATCTACTCAAATAT+CGG | + | chr1_4:49827905-49827924 | Msa0167790:CDS | 25.0% |
| ! | ATTTGATCTACTCAAATATC+GGG | + | chr1_4:49827906-49827925 | Msa0167790:CDS | 25.0% |
| TATCTATATTACCAGCGATA+TGG | - | chr1_4:49825823-49825842 | None:intergenic | 30.0% | |
| ! | CGTCTTCATTTTCCAAATTT+AGG | - | chr1_4:49825901-49825920 | None:intergenic | 30.0% |
| !! | TCTTTCTAGTTGAGCATATT+TGG | + | chr1_4:49826078-49826097 | Msa0167790:intron | 30.0% |
| TTTAAATGGGACCATATTAG+GGG | - | chr1_4:49826151-49826170 | None:intergenic | 30.0% | |
| TATAGCAGGTACGATATAAT+GGG | - | chr1_4:49826190-49826209 | None:intergenic | 30.0% | |
| CTTATAAAATTCCAGCCATT+CGG | + | chr1_4:49826307-49826326 | Msa0167790:intron | 30.0% | |
| GATGAAGAATTGGTTATTAC+AGG | + | chr1_4:49826746-49826765 | Msa0167790:intron | 30.0% | |
| AGAGTCAACAAGTAAAATCT+GGG | + | chr1_4:49826889-49826908 | Msa0167790:intron | 30.0% | |
| GATTATGTATTGAATCAACC+TGG | - | chr1_4:49826978-49826997 | None:intergenic | 30.0% | |
| TGAGATGTTTGTTCAAAACA+TGG | - | chr1_4:49827070-49827089 | None:intergenic | 30.0% | |
| CAAACATCTCACAATAAACA+TGG | + | chr1_4:49827079-49827098 | Msa0167790:intron | 30.0% | |
| !!! | CAATGGATGGTTTTATGATT+GGG | - | chr1_4:49827290-49827309 | None:intergenic | 30.0% |
| !!! | ACAATGGATGGTTTTATGAT+TGG | - | chr1_4:49827291-49827310 | None:intergenic | 30.0% |
| AACAAGGTAAAAACAATGGA+TGG | - | chr1_4:49827303-49827322 | None:intergenic | 30.0% | |
| ACTTCATCCAGTATGAAAAA+TGG | - | chr1_4:49827532-49827551 | None:intergenic | 30.0% | |
| ATTCGTTCAAAATCTTGTGA+AGG | + | chr1_4:49827598-49827617 | Msa0167790:CDS | 30.0% | |
| ATGTCATCAACCTATTGTAA+AGG | - | chr1_4:49827793-49827812 | None:intergenic | 30.0% | |
| ! | GTATCCAATGGATGAATTTT+AGG | - | chr1_4:49827935-49827954 | None:intergenic | 30.0% |
| CTGGTAATTTAAACACAAGA+TGG | - | chr1_4:49828052-49828071 | None:intergenic | 30.0% | |
| TCCTATTTACACAATAAAGG+AGG | - | chr1_4:49828078-49828097 | None:intergenic | 30.0% | |
| ATATTACGAATACTAAGTCG+TGG | - | chr1_4:49828222-49828241 | None:intergenic | 30.0% | |
| TGGAACAGCATACCTAAATT+TGG | + | chr1_4:49825886-49825905 | Msa0167790:CDS | 35.0% | |
| TACTTCATGCCATGTAGAAA+TGG | - | chr1_4:49825926-49825945 | None:intergenic | 35.0% | |
| AGTACAAATAACTCTACCTG+TGG | - | chr1_4:49826042-49826061 | None:intergenic | 35.0% | |
| CTATAGCAGGTACGATATAA+TGG | - | chr1_4:49826191-49826210 | None:intergenic | 35.0% | |
| TGGTTGAGGTAGAAGAATTT+AGG | - | chr1_4:49826443-49826462 | None:intergenic | 35.0% | |
| AATTCTTCTACCTCAACCAA+CGG | + | chr1_4:49826444-49826463 | Msa0167790:intron | 35.0% | |
| CGAAGAAAGTTCTTATTAGC+TGG | - | chr1_4:49826494-49826513 | None:intergenic | 35.0% | |
| CATCGAGTAATTCTACCATT+CGG | - | chr1_4:49826520-49826539 | None:intergenic | 35.0% | |
| ATGGTAGAATTACTCGATGT+TGG | + | chr1_4:49826521-49826540 | Msa0167790:intron | 35.0% | |
| GGAAGATGATTTAGAGGAAA+CGG | + | chr1_4:49826584-49826603 | Msa0167790:intron | 35.0% | |
| GAAGAATTGGTTATTACAGG+AGG | + | chr1_4:49826749-49826768 | Msa0167790:intron | 35.0% | |
| GAGAGTCAACAAGTAAAATC+TGG | + | chr1_4:49826888-49826907 | Msa0167790:intron | 35.0% | |
| ! | TGCTTAAAAAGTCTTTTGCC+AGG | + | chr1_4:49826957-49826976 | Msa0167790:intron | 35.0% |
| ATAAACATGGTCACTGAGAT+TGG | + | chr1_4:49827092-49827111 | Msa0167790:intron | 35.0% | |
| AAAAACCAGTTGGCACATTA+AGG | - | chr1_4:49827219-49827238 | None:intergenic | 35.0% | |
| ! | AAACCATGTTAATGGACATG+TGG | - | chr1_4:49827476-49827495 | None:intergenic | 35.0% |
| TCCAGTATGAAAAATGGTGA+AGG | - | chr1_4:49827526-49827545 | None:intergenic | 35.0% | |
| ! | AATACTCTGAAAACCAGATC+CGG | - | chr1_4:49827650-49827669 | None:intergenic | 35.0% |
| GAGTCCTAAAATTCATCCAT+TGG | + | chr1_4:49827928-49827947 | Msa0167790:exon | 35.0% | |
| TAAACACAAGATGGACAAGA+GGG | - | chr1_4:49828043-49828062 | None:intergenic | 35.0% | |
| TTAAACACAAGATGGACAAG+AGG | - | chr1_4:49828044-49828063 | None:intergenic | 35.0% | |
| GCCTCCTTTATTGTGTAAAT+AGG | + | chr1_4:49828074-49828093 | Msa0167790:three_prime_UTR | 35.0% | |
| GCATCTAATCATCTACTATG+AGG | - | chr1_4:49828109-49828128 | None:intergenic | 35.0% | |
| CATTCCTCCTTTAAGTCAAA+CGG | + | chr1_4:49828261-49828280 | Msa0167790:three_prime_UTR | 35.0% | |
| GAAGACGATCCATTTCTACA+TGG | + | chr1_4:49825914-49825933 | Msa0167790:CDS | 40.0% | |
| CAAATAACTCTACCTGTGGA+TGG | - | chr1_4:49826038-49826057 | None:intergenic | 40.0% | |
| TCCCATTTAAAAAGGTCCAC+CGG | + | chr1_4:49826160-49826179 | Msa0167790:intron | 40.0% | |
| ! | ACCGGTGGACCTTTTTAAAT+GGG | - | chr1_4:49826164-49826183 | None:intergenic | 40.0% |
| !! | GTACGATATAATGGGTTCAC+CGG | - | chr1_4:49826182-49826201 | None:intergenic | 40.0% |
| TATATCGTACCTGCTATAGC+CGG | + | chr1_4:49826192-49826211 | Msa0167790:intron | 40.0% | |
| AAGTTATAACCGGCTATAGC+AGG | - | chr1_4:49826204-49826223 | None:intergenic | 40.0% | |
| !! | CATTTGGGTTTGTTGCACAT+GGG | - | chr1_4:49826285-49826304 | None:intergenic | 40.0% |
| !! | ACATTTGGGTTTGTTGCACA+TGG | - | chr1_4:49826286-49826305 | None:intergenic | 40.0% |
| ! | TTCTTTAGAAACTCGTGCAG+AGG | + | chr1_4:49826408-49826427 | Msa0167790:intron | 40.0% |
| AAAGTTCTTATTAGCTGGCG+AGG | - | chr1_4:49826489-49826508 | None:intergenic | 40.0% | |
| TGGAGAGGAAGATGATTTAG+AGG | + | chr1_4:49826578-49826597 | Msa0167790:intron | 40.0% | |
| GTGGTTTAGGGATGAAGAAT+TGG | + | chr1_4:49826736-49826755 | Msa0167790:intron | 40.0% | |
| ATGTTGCCTGATAGCTTAAC+TGG | + | chr1_4:49826786-49826805 | Msa0167790:intron | 40.0% | |
| TGTTGCCTGATAGCTTAACT+GGG | + | chr1_4:49826787-49826806 | Msa0167790:intron | 40.0% | |
| AACTTCACATGCAACACAAC+AGG | - | chr1_4:49826815-49826834 | None:intergenic | 40.0% | |
| GGAATAGAAGAGGAAGAAGA+GGG | + | chr1_4:49827162-49827181 | Msa0167790:intron | 40.0% | |
| GAATAGAAGAGGAAGAAGAG+GGG | + | chr1_4:49827163-49827182 | Msa0167790:intron | 40.0% | |
| ! | CTTTTCCTTAATGTGCCAAC+TGG | + | chr1_4:49827211-49827230 | Msa0167790:intron | 40.0% |
| !!! | TGTGCCAACTGGTTTTTCAA+TGG | + | chr1_4:49827222-49827241 | Msa0167790:intron | 40.0% |
| TGGACCATTGAAAAACCAGT+TGG | - | chr1_4:49827229-49827248 | None:intergenic | 40.0% | |
| ACCCATGAACCTTACTCTAA+CGG | + | chr1_4:49827248-49827267 | Msa0167790:intron | 40.0% | |
| AATATGCACCCGTTAGAGTA+AGG | - | chr1_4:49827260-49827279 | None:intergenic | 40.0% | |
| ! | TACTCTAACGGGTGCATATT+AGG | + | chr1_4:49827260-49827279 | Msa0167790:intron | 40.0% |
| ! | ACTCTAACGGGTGCATATTA+GGG | + | chr1_4:49827261-49827280 | Msa0167790:intron | 40.0% |
| GCAAGTGGAAACCATGTTAA+TGG | - | chr1_4:49827484-49827503 | None:intergenic | 40.0% | |
| !! | GCCTTCACCATTTTTCATAC+TGG | + | chr1_4:49827522-49827541 | Msa0167790:CDS | 40.0% |
| GGACAACTTGAATGTTGCAA+AGG | + | chr1_4:49827564-49827583 | Msa0167790:CDS | 40.0% | |
| TTGAATGTTGCAAAGGTTGC+TGG | + | chr1_4:49827571-49827590 | Msa0167790:CDS | 40.0% | |
| CAAAATCTTGTGAAGGAGCA+AGG | + | chr1_4:49827605-49827624 | Msa0167790:CDS | 40.0% | |
| ! | ACAAAGCTGAAGCGTTAGTT+GGG | + | chr1_4:49827698-49827717 | Msa0167790:CDS | 40.0% |
| ! | TTTACAGGGACTCTGAAAGA+GGG | + | chr1_4:49827722-49827741 | Msa0167790:CDS | 40.0% |
| AAACACAAGATGGACAAGAG+GGG | - | chr1_4:49828042-49828061 | None:intergenic | 40.0% | |
| TACACAATAAAGGAGGCAAC+TGG | - | chr1_4:49828071-49828090 | None:intergenic | 40.0% | |
| AGCACTTCTAGTGAAGGAAA+AGG | - | chr1_4:49828131-49828150 | None:intergenic | 40.0% | |
| ! | CTACAAAGCACTTCTAGTGA+AGG | - | chr1_4:49828137-49828156 | None:intergenic | 40.0% |
| AAGTGCTTTGTAGCTAGACT+AGG | + | chr1_4:49828144-49828163 | Msa0167790:three_prime_UTR | 40.0% | |
| ! | TTCATGGCCGTTTGACTTAA+AGG | - | chr1_4:49828271-49828290 | None:intergenic | 40.0% |
| AAAGAGCAACACACATCCTC+TGG | + | chr1_4:49825862-49825881 | Msa0167790:CDS | 45.0% | |
| AAGAGCAACACACATCCTCT+GGG | + | chr1_4:49825863-49825882 | Msa0167790:CDS | 45.0% | |
| CAGATAGTTGTTCCATGTCG+CGG | - | chr1_4:49825976-49825995 | None:intergenic | 45.0% | |
| GACATGGAACAACTATCTGG+CGG | + | chr1_4:49825977-49825996 | Msa0167790:CDS | 45.0% | |
| ! | GGGGCACCCTTTATGAATAA+AGG | - | chr1_4:49826132-49826151 | None:intergenic | 45.0% |
| !! | CATAAAGGGTGCCCCTAATA+TGG | + | chr1_4:49826137-49826156 | Msa0167790:intron | 45.0% |
| ! | CACCGGTGGACCTTTTTAAA+TGG | - | chr1_4:49826165-49826184 | None:intergenic | 45.0% |
| ATTCCCATAGCAACACCGAA+TGG | - | chr1_4:49826325-49826344 | None:intergenic | 45.0% | |
| !! | TTCGGTGTTGCTATGGGAAT+TGG | + | chr1_4:49826325-49826344 | Msa0167790:intron | 45.0% |
| !! | TCGGTGTTGCTATGGGAATT+GGG | + | chr1_4:49826326-49826345 | Msa0167790:intron | 45.0% |
| CCATGTTTGTGTAACTCGTG+CGG | + | chr1_4:49826362-49826381 | Msa0167790:intron | 45.0% | |
| CGAGTAATTCTACCATTCGG+TGG | - | chr1_4:49826517-49826536 | None:intergenic | 45.0% | |
| CCACCTATTAGAACTCTGTC+GGG | - | chr1_4:49826550-49826569 | None:intergenic | 45.0% | |
| GCCACCTATTAGAACTCTGT+CGG | - | chr1_4:49826551-49826570 | None:intergenic | 45.0% | |
| ! | GACAGAGTTCTAATAGGTGG+CGG | + | chr1_4:49826550-49826569 | Msa0167790:intron | 45.0% |
| GAGGAAACGGAAGCAGATAT+CGG | + | chr1_4:49826597-49826616 | Msa0167790:intron | 45.0% | |
| AAGCAGATATCGGAGGAATG+TGG | + | chr1_4:49826607-49826626 | Msa0167790:intron | 45.0% | |
| GAGGAAGTGAGAACTCTCTA+CGG | + | chr1_4:49826629-49826648 | Msa0167790:intron | 45.0% | |
| AGGTACCCAGTTAAGCTATC+AGG | - | chr1_4:49826795-49826814 | None:intergenic | 45.0% | |
| CTGGTTCATTCGAAATCGCA+TGG | + | chr1_4:49826932-49826951 | Msa0167790:intron | 45.0% | |
| AACATGGTCACTGAGATTGG+TGG | + | chr1_4:49827095-49827114 | Msa0167790:intron | 45.0% | |
| !! | TGGTGGTGGTTGTGTAATGA+CGG | + | chr1_4:49827112-49827131 | Msa0167790:intron | 45.0% |
| GTTGTGTAATGACGGTGACA+GGG | + | chr1_4:49827120-49827139 | Msa0167790:intron | 45.0% | |
| TTGTGTAATGACGGTGACAG+GGG | + | chr1_4:49827121-49827140 | Msa0167790:intron | 45.0% | |
| !! | TGTGGTGATGGGAATAGAAG+AGG | + | chr1_4:49827152-49827171 | Msa0167790:intron | 45.0% |
| GGGAATAGAAGAGGAAGAAG+AGG | + | chr1_4:49827161-49827180 | Msa0167790:intron | 45.0% | |
| GTTAGAGTAAGGTTCATGGG+TGG | - | chr1_4:49827249-49827268 | None:intergenic | 45.0% | |
| CCCGTTAGAGTAAGGTTCAT+GGG | - | chr1_4:49827252-49827271 | None:intergenic | 45.0% | |
| CCCATGAACCTTACTCTAAC+GGG | + | chr1_4:49827249-49827268 | Msa0167790:intron | 45.0% | |
| ACCCGTTAGAGTAAGGTTCA+TGG | - | chr1_4:49827253-49827272 | None:intergenic | 45.0% | |
| ! | CTCTAACGGGTGCATATTAG+GGG | + | chr1_4:49827262-49827281 | Msa0167790:intron | 45.0% |
| GGTCCACATGTCCATTAACA+TGG | + | chr1_4:49827470-49827489 | Msa0167790:intron | 45.0% | |
| !! | GGATGAAGTTGATGCTGCAT+TGG | + | chr1_4:49827543-49827562 | Msa0167790:CDS | 45.0% |
| TGAAGGAGCAAGGACTAATC+AGG | + | chr1_4:49827615-49827634 | Msa0167790:CDS | 45.0% | |
| ACTAATCAGGATGCTGATGC+CGG | + | chr1_4:49827628-49827647 | Msa0167790:CDS | 45.0% | |
| ! | GACAAAGCTGAAGCGTTAGT+TGG | + | chr1_4:49827697-49827716 | Msa0167790:CDS | 45.0% |
| ! | CAAAGCTGAAGCGTTAGTTG+GGG | + | chr1_4:49827699-49827718 | Msa0167790:CDS | 45.0% |
| AAGCGTTAGTTGGGGTTTAC+AGG | + | chr1_4:49827707-49827726 | Msa0167790:CDS | 45.0% | |
| AGCGTTAGTTGGGGTTTACA+GGG | + | chr1_4:49827708-49827727 | Msa0167790:CDS | 45.0% | |
| ! | GTTTACAGGGACTCTGAAAG+AGG | + | chr1_4:49827721-49827740 | Msa0167790:CDS | 45.0% |
| TGCTTTCGATGTACAGAGCT+CGG | + | chr1_4:49827966-49827985 | Msa0167790:three_prime_UTR | 45.0% | |
| TGCTTTGTAGCTAGACTAGG+TGG | + | chr1_4:49828147-49828166 | Msa0167790:three_prime_UTR | 45.0% | |
| CTAGGTGGCAGAATATCTGT+TGG | + | chr1_4:49828162-49828181 | Msa0167790:three_prime_UTR | 45.0% | |
| ! | ATGGCCGTTTGACTTAAAGG+AGG | - | chr1_4:49828268-49828287 | None:intergenic | 45.0% |
| GAGGCTTTCAACCATATCGC+TGG | + | chr1_4:49825809-49825828 | Msa0167790:CDS | 50.0% | |
| CTGCTATGCCACCAACAAAG+CGG | + | chr1_4:49825948-49825967 | Msa0167790:CDS | 50.0% | |
| CGCGACATGGAACAACTATC+TGG | + | chr1_4:49825974-49825993 | Msa0167790:CDS | 50.0% | |
| !! | CGATATAATGGGTTCACCGG+TGG | - | chr1_4:49826179-49826198 | None:intergenic | 50.0% |
| !! | CAGCCATTCGGTGTTGCTAT+GGG | + | chr1_4:49826319-49826338 | Msa0167790:intron | 50.0% |
| !! | CGGTGTTGCTATGGGAATTG+GGG | + | chr1_4:49826327-49826346 | Msa0167790:intron | 50.0% |
| !! | GGTGTTGCTATGGGAATTGG+GGG | + | chr1_4:49826328-49826347 | Msa0167790:intron | 50.0% |
| CCGCACGAGTTACACAAACA+TGG | - | chr1_4:49826365-49826384 | None:intergenic | 50.0% | |
| TACAAAGAAGCAGACGCCGT+TGG | - | chr1_4:49826463-49826482 | None:intergenic | 50.0% | |
| GAACTTTCTTCGCCACCGAA+TGG | + | chr1_4:49826502-49826521 | Msa0167790:intron | 50.0% | |
| CCTATTAGAACTCTGTCGGG+TGG | - | chr1_4:49826547-49826566 | None:intergenic | 50.0% | |
| ! | CCACCCGACAGAGTTCTAAT+AGG | + | chr1_4:49826544-49826563 | Msa0167790:intron | 50.0% |
| ! | CCCGACAGAGTTCTAATAGG+TGG | + | chr1_4:49826547-49826566 | Msa0167790:intron | 50.0% |
| GAAACGGAAGCAGATATCGG+AGG | + | chr1_4:49826600-49826619 | Msa0167790:intron | 50.0% | |
| CAGATATCGGAGGAATGTGG+AGG | + | chr1_4:49826610-49826629 | Msa0167790:intron | 50.0% | |
| GTGAGAACTCTCTACGGCTT+CGG | + | chr1_4:49826635-49826654 | Msa0167790:intron | 50.0% | |
| ATGGTCACTGAGATTGGTGG+TGG | + | chr1_4:49827098-49827117 | Msa0167790:intron | 50.0% | |
| GGTTGTGTAATGACGGTGAC+AGG | + | chr1_4:49827119-49827138 | Msa0167790:intron | 50.0% | |
| GCTTTCGATGTACAGAGCTC+GGG | + | chr1_4:49827967-49827986 | Msa0167790:three_prime_UTR | 50.0% | |
| AGCAACACACATCCTCTGGG+TGG | + | chr1_4:49825866-49825885 | Msa0167790:CDS | 55.0% | |
| AGGTATGCTGTTCCACCCAG+AGG | - | chr1_4:49825881-49825900 | None:intergenic | 55.0% | |
| ATGTCGCGGAACCGCTTTGT+TGG | - | chr1_4:49825962-49825981 | None:intergenic | 55.0% | |
| AACAAAGCGGTTCCGCGACA+TGG | + | chr1_4:49825961-49825980 | Msa0167790:CDS | 55.0% | |
| ! | CGTTGCTGTTCTCCATCCAC+AGG | + | chr1_4:49826023-49826042 | Msa0167790:CDS | 55.0% |
| CCATAGCAACACCGAATGGC+TGG | - | chr1_4:49826321-49826340 | None:intergenic | 55.0% | |
| !! | CCAGCCATTCGGTGTTGCTA+TGG | + | chr1_4:49826318-49826337 | Msa0167790:intron | 55.0% |
| ! | TCTAATAGGTGGCGGCGATG+TGG | + | chr1_4:49826558-49826577 | Msa0167790:intron | 55.0% |
| ATGACGGTGACAGGGGCAAT+TGG | + | chr1_4:49827128-49827147 | Msa0167790:intron | 55.0% | |
| TGACGGTGACAGGGGCAATT+GGG | + | chr1_4:49827129-49827148 | Msa0167790:intron | 55.0% | |
| GGGCAATTGGGTGTGGTGAT+GGG | + | chr1_4:49827141-49827160 | Msa0167790:intron | 55.0% | |
| ! | TCGCGGAACCGCTTTGTTGG+TGG | - | chr1_4:49825959-49825978 | None:intergenic | 60.0% |
| ! | GAAGCAGACGCCGTTGGTTG+AGG | - | chr1_4:49826457-49826476 | None:intergenic | 60.0% |
| GTGACAGGGGCAATTGGGTG+TGG | + | chr1_4:49827134-49827153 | Msa0167790:intron | 60.0% | |
| GGGGCAATTGGGTGTGGTGA+TGG | + | chr1_4:49827140-49827159 | Msa0167790:intron | 60.0% | |
| CAGGATGCTGATGCCGGATC+TGG | + | chr1_4:49827634-49827653 | Msa0167790:CDS | 60.0% | |
| ! | TAGGTGGCGGCGATGTGGAG+AGG | + | chr1_4:49826563-49826582 | Msa0167790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49825798 | 49828297 | 49825798 | ID=Msa0167790;Name=Msa0167790 |
| chr1_4 | mRNA | 49825798 | 49828297 | 49825798 | ID=Msa0167790-mRNA-1;Parent=Msa0167790;Name=Msa0167790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=8|1|1|1|0.5|0.33|3|361|171 |
| chr1_4 | exon | 49825798 | 49826044 | 49825798 | ID=Msa0167790-mRNA-1:exon:14693;Parent=Msa0167790-mRNA-1 |
| chr1_4 | exon | 49827516 | 49827743 | 49827516 | ID=Msa0167790-mRNA-1:exon:14694;Parent=Msa0167790-mRNA-1 |
| chr1_4 | exon | 49827888 | 49828297 | 49827888 | ID=Msa0167790-mRNA-1:exon:14695;Parent=Msa0167790-mRNA-1 |
| chr1_4 | five_prime_UTR | 49825798 | 49825805 | 49825798 | ID=Msa0167790-mRNA-1:five_prime_utr;Parent=Msa0167790-mRNA-1 |
| chr1_4 | CDS | 49825806 | 49826044 | 49825806 | ID=Msa0167790-mRNA-1:cds;Parent=Msa0167790-mRNA-1 |
| chr1_4 | CDS | 49827516 | 49827743 | 49827516 | ID=Msa0167790-mRNA-1:cds;Parent=Msa0167790-mRNA-1 |
| chr1_4 | CDS | 49827888 | 49827936 | 49827888 | ID=Msa0167790-mRNA-1:cds;Parent=Msa0167790-mRNA-1 |
| chr1_4 | three_prime_UTR | 49827937 | 49828297 | 49827937 | ID=Msa0167790-mRNA-1:three_prime_utr;Parent=Msa0167790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
