Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168760 | sp|Q9LJ86|LTPG5_ARATH | 47.619 | 168 | 60 | 5 | 23 | 185 | 23 | 167 | 5.21e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168760 | A0A396K084 | 93.750 | 192 | 8 | 1 | 1 | 192 | 1 | 188 | 5.07e-102 | 301 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028710 | Msa0168760 | 0.821636 | 3.634001e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168760 | MtrunA17_Chr1g0185321 | 93.750 | 192 | 8 | 1 | 1 | 192 | 1 | 188 | 9.76e-106 | 301 |
| Msa0168760 | MtrunA17_Chr5g0395001 | 54.645 | 183 | 62 | 3 | 1 | 183 | 1 | 162 | 1.40e-51 | 163 |
| Msa0168760 | MtrunA17_Chr1g0205201 | 45.810 | 179 | 55 | 3 | 10 | 187 | 10 | 147 | 3.36e-43 | 141 |
| Msa0168760 | MtrunA17_Chr1g0205181 | 44.928 | 138 | 73 | 2 | 1 | 137 | 1 | 136 | 9.13e-29 | 104 |
| Msa0168760 | MtrunA17_Chr7g0260061 | 50.794 | 126 | 52 | 4 | 1 | 121 | 1 | 121 | 3.67e-27 | 101 |
| Msa0168760 | MtrunA17_Chr1g0205191 | 60.241 | 83 | 31 | 1 | 24 | 106 | 24 | 104 | 3.99e-27 | 99.4 |
| Msa0168760 | MtrunA17_Chr3g0118471 | 43.529 | 85 | 45 | 2 | 24 | 105 | 46 | 130 | 8.37e-15 | 69.7 |
| Msa0168760 | MtrunA17_Chr5g0394991 | 34.286 | 175 | 88 | 8 | 6 | 155 | 8 | 180 | 2.08e-13 | 65.9 |
| Msa0168760 | MtrunA17_Chr8g0356191 | 28.796 | 191 | 118 | 8 | 1 | 186 | 9 | 186 | 3.46e-12 | 62.4 |
| Msa0168760 | MtrunA17_Chr5g0429901 | 35.052 | 97 | 58 | 3 | 28 | 122 | 35 | 128 | 4.92e-12 | 62.0 |
| Msa0168760 | MtrunA17_Chr1g0201291 | 49.254 | 67 | 31 | 2 | 10 | 75 | 10 | 74 | 1.50e-11 | 58.2 |
| Msa0168760 | MtrunA17_Chr8g0378461 | 36.471 | 85 | 52 | 2 | 22 | 105 | 30 | 113 | 2.98e-11 | 59.7 |
| Msa0168760 | MtrunA17_Chr7g0260071 | 41.346 | 104 | 53 | 5 | 35 | 133 | 41 | 141 | 2.99e-11 | 60.1 |
| Msa0168760 | MtrunA17_Chr6g0484651 | 38.889 | 72 | 43 | 1 | 28 | 99 | 43 | 113 | 3.29e-11 | 58.2 |
| Msa0168760 | MtrunA17_Chr2g0278971 | 34.579 | 107 | 64 | 4 | 28 | 131 | 76 | 179 | 6.06e-11 | 59.3 |
| Msa0168760 | MtrunA17_Chr2g0278981 | 33.673 | 98 | 59 | 3 | 28 | 123 | 35 | 128 | 6.32e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168760 | AT3G22600.1 | 47.619 | 168 | 60 | 5 | 23 | 185 | 23 | 167 | 5.29e-37 | 126 |
| Msa0168760 | AT2G48130.2 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT2G48130.6 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT2G48130.4 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT2G48130.5 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT2G48130.1 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT2G48130.3 | 42.105 | 190 | 95 | 5 | 1 | 187 | 1 | 178 | 1.08e-36 | 126 |
| Msa0168760 | AT1G03103.1 | 44.505 | 182 | 86 | 4 | 7 | 185 | 2 | 171 | 6.23e-35 | 121 |
| Msa0168760 | AT4G14815.1 | 43.750 | 128 | 60 | 3 | 8 | 123 | 5 | 132 | 1.44e-28 | 104 |
| Msa0168760 | AT3G43720.2 | 32.335 | 167 | 93 | 5 | 28 | 187 | 38 | 191 | 2.07e-16 | 73.9 |
| Msa0168760 | AT3G43720.1 | 32.738 | 168 | 94 | 4 | 28 | 189 | 38 | 192 | 4.67e-15 | 70.5 |
| Msa0168760 | AT1G55260.1 | 28.571 | 168 | 100 | 5 | 25 | 186 | 73 | 226 | 2.19e-14 | 69.3 |
| Msa0168760 | AT2G13820.3 | 35.606 | 132 | 74 | 6 | 1 | 124 | 13 | 141 | 3.42e-14 | 67.8 |
| Msa0168760 | AT1G55260.2 | 27.879 | 165 | 101 | 4 | 25 | 184 | 73 | 224 | 3.68e-14 | 68.6 |
| Msa0168760 | AT2G13820.1 | 35.606 | 132 | 74 | 6 | 1 | 124 | 1 | 129 | 3.92e-14 | 67.4 |
| Msa0168760 | AT2G13820.2 | 36.111 | 108 | 63 | 4 | 1 | 105 | 1 | 105 | 4.43e-14 | 66.2 |
| Msa0168760 | AT1G05450.2 | 41.441 | 111 | 59 | 4 | 30 | 139 | 36 | 141 | 2.99e-13 | 65.9 |
| Msa0168760 | AT5G09370.3 | 34.426 | 122 | 73 | 3 | 20 | 136 | 20 | 139 | 4.17e-13 | 64.3 |
| Msa0168760 | AT5G09370.1 | 30.539 | 167 | 84 | 4 | 20 | 184 | 20 | 156 | 4.72e-13 | 64.3 |
| Msa0168760 | AT5G09370.2 | 36.000 | 100 | 60 | 2 | 20 | 117 | 20 | 117 | 7.05e-13 | 63.2 |
| Msa0168760 | AT4G08670.1 | 34.911 | 169 | 90 | 8 | 26 | 190 | 46 | 198 | 2.06e-12 | 63.5 |
| Msa0168760 | AT2G44290.1 | 26.316 | 209 | 122 | 7 | 1 | 192 | 9 | 202 | 3.75e-12 | 62.8 |
| Msa0168760 | AT2G44300.1 | 26.590 | 173 | 115 | 5 | 25 | 186 | 32 | 203 | 8.01e-12 | 62.0 |
Find 50 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGTGGTGGTTCCTCTTT+TGG | 0.221904 | 1_4:+51655806 | Msa0168760:CDS |
| AGGAGTAATATGGCATTTAA+AGG | 0.269134 | 1_4:+51655581 | Msa0168760:exon |
| TTCTCTCCCTTCTGCTTGTA+AGG | 0.292908 | 1_4:+51655856 | Msa0168760:CDS |
| AGAATTAGTTCCAAGATAAA+AGG | 0.298787 | 1_4:+51655561 | Msa0168760:five_prime_UTR |
| ATACCTTTGCACTGACTAAC+TGG | 0.318341 | 1_4:-51655890 | None:intergenic |
| TGTCTATGTTCCCTGCTTAA+TGG | 0.339607 | 1_4:+51655788 | Msa0168760:CDS |
| GAAGGTGTTATTGCGCCTTC+AGG | 0.344331 | 1_4:-51656154 | None:intergenic |
| CCAAGATAAAAGGAGTAATA+TGG | 0.344470 | 1_4:+51655571 | Msa0168760:exon |
| CCCTTGTCTAAACTACATAA+TGG | 0.344834 | 1_4:+51655697 | Msa0168760:CDS |
| ACATAGTTGTATAATTACTA+TGG | 0.365754 | 1_4:+51656530 | Msa0168760:three_prime_UTR |
| ATTTATAGTGATTCCAAAAG+AGG | 0.409101 | 1_4:-51655819 | None:intergenic |
| TGGTGAATTGCAGGTGGAGC+AGG | 0.429072 | 1_4:+51656321 | Msa0168760:intron |
| GAATCAGTTGGAGAATCAAC+AGG | 0.442453 | 1_4:-51656118 | None:intergenic |
| ATAGACACTGTGGAGAAGAT+TGG | 0.447334 | 1_4:-51655772 | None:intergenic |
| CCACAAAATGCAGCTCAATC+AGG | 0.451625 | 1_4:+51655647 | Msa0168760:CDS |
| GGAGTAATATGGCATTTAAA+GGG | 0.451900 | 1_4:+51655582 | Msa0168760:exon |
| CCTTGTCTAAACTACATAAT+GGG | 0.472776 | 1_4:+51655698 | Msa0168760:CDS |
| TATTGCGCCTTCAGGTGATT+CGG | 0.478371 | 1_4:-51656146 | None:intergenic |
| TCCTACAAGTTCAACTTCTC+CGG | 0.480530 | 1_4:+51656087 | Msa0168760:CDS |
| TATGTTACATATATCTTCAA+TGG | 0.487032 | 1_4:-51656512 | None:intergenic |
| TGTATAAATTTAGGTGGCAA+TGG | 0.490352 | 1_4:+51656055 | Msa0168760:intron |
| GTATATCATGTGTCTAGTTA+TGG | 0.491062 | 1_4:+51655604 | Msa0168760:CDS |
| AGGAACCACCACCATTAAGC+AGG | 0.501541 | 1_4:-51655799 | None:intergenic |
| TGTTCCCTGCTTAATGGTGG+TGG | 0.504861 | 1_4:+51655794 | Msa0168760:CDS |
| GACATCAATAGTTCTTCCAT+TGG | 0.505063 | 1_4:-51656379 | None:intergenic |
| GCCGGAGAAGTTGAACTTGT+AGG | 0.526939 | 1_4:-51656088 | None:intergenic |
| GATGAGCCACCATCTGTTGA+TGG | 0.529624 | 1_4:-51656357 | None:intergenic |
| GTATGCACAAACTCAGAACT+TGG | 0.536844 | 1_4:-51656451 | None:intergenic |
| CCCATTATGTAGTTTAGACA+AGG | 0.540572 | 1_4:-51655698 | None:intergenic |
| GTGGACACATATTGGCCACT+AGG | 0.547658 | 1_4:-51655628 | None:intergenic |
| GTTTGAACCTTACAAGCAGA+AGG | 0.551664 | 1_4:-51655863 | None:intergenic |
| GATTCGGTTGAAGAATCAGT+TGG | 0.558414 | 1_4:-51656130 | None:intergenic |
| TACAAGTTCAACTTCTCCGG+CGG | 0.564633 | 1_4:+51656090 | Msa0168760:CDS |
| TGTGAGCAACATGAAGATGA+TGG | 0.568265 | 1_4:-51655734 | None:intergenic |
| ACAGATGGTGGCTCATCCAA+TGG | 0.569875 | 1_4:+51656363 | Msa0168760:CDS |
| ACAAGTTCAACTTCTCCGGC+GGG | 0.591404 | 1_4:+51656091 | Msa0168760:CDS |
| GTGTCTAGTTATGGTCCTAG+TGG | 0.598230 | 1_4:+51655613 | Msa0168760:CDS |
| GAATCAACAGGAGAGCCCGC+CGG | 0.608323 | 1_4:-51656106 | None:intergenic |
| CTATGTTCCCTGCTTAATGG+TGG | 0.609944 | 1_4:+51655791 | Msa0168760:CDS |
| AAAAGTATACCATCAACAGA+TGG | 0.613026 | 1_4:+51656348 | Msa0168760:CDS |
| AGTATACCATCAACAGATGG+TGG | 0.617964 | 1_4:+51656351 | Msa0168760:CDS |
| GGAAAATCTGAGTTTGCAGA+AGG | 0.625869 | 1_4:-51656172 | None:intergenic |
| TCTTCAACCGAATCACCTGA+AGG | 0.645912 | 1_4:+51656139 | Msa0168760:CDS |
| CCATTATGTAGTTTAGACAA+GGG | 0.649809 | 1_4:-51655697 | None:intergenic |
| TTTGAACCTTACAAGCAGAA+GGG | 0.651803 | 1_4:-51655862 | None:intergenic |
| CCTTTGCACTGACTAACTGG+TGG | 0.657098 | 1_4:-51655887 | None:intergenic |
| GGAACCACCACCATTAAGCA+GGG | 0.659510 | 1_4:-51655798 | None:intergenic |
| CCACCAGTTAGTCAGTGCAA+AGG | 0.663443 | 1_4:+51655887 | Msa0168760:CDS |
| AGCAGGGAACATAGACACTG+TGG | 0.720182 | 1_4:-51655782 | None:intergenic |
| GGTGATGACACAAAACACAA+AGG | 0.720788 | 1_4:-51656430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATATATCTTTTATACTTA+TGG | - | chr1_4:51655542-51655561 | None:intergenic | 15.0% |
| !! | ATAATAATATATTTACCTGA+GGG | - | chr1_4:51656196-51656215 | None:intergenic | 15.0% |
| !!! | TGATATATCTTTTATACTTA+TGG | - | chr1_4:51655542-51655561 | None:intergenic | 15.0% |
| !! | ATAATAATATATTTACCTGA+GGG | - | chr1_4:51656196-51656215 | None:intergenic | 15.0% |
| !!! | TAATAGTTGTTTTAGATCAA+TGG | + | chr1_4:51655932-51655951 | Msa0168760:intron | 20.0% |
| !! | TATTCCCATTGTATAAATTT+AGG | + | chr1_4:51656046-51656065 | Msa0168760:intron | 20.0% |
| !! | CATAATAATATATTTACCTG+AGG | - | chr1_4:51656197-51656216 | None:intergenic | 20.0% |
| !! | AAATTGCTTAAGAAAAAACA+AGG | - | chr1_4:51656287-51656306 | None:intergenic | 20.0% |
| !! | TATGTTACATATATCTTCAA+TGG | - | chr1_4:51656515-51656534 | None:intergenic | 20.0% |
| !! | ACATAGTTGTATAATTACTA+TGG | + | chr1_4:51656530-51656549 | Msa0168760:three_prime_UTR | 20.0% |
| !!! | TAATAGTTGTTTTAGATCAA+TGG | + | chr1_4:51655932-51655951 | Msa0168760:intron | 20.0% |
| !! | TATTCCCATTGTATAAATTT+AGG | + | chr1_4:51656046-51656065 | Msa0168760:intron | 20.0% |
| !! | CATAATAATATATTTACCTG+AGG | - | chr1_4:51656197-51656216 | None:intergenic | 20.0% |
| !! | AAATTGCTTAAGAAAAAACA+AGG | - | chr1_4:51656287-51656306 | None:intergenic | 20.0% |
| !! | TATGTTACATATATCTTCAA+TGG | - | chr1_4:51656515-51656534 | None:intergenic | 20.0% |
| !! | ACATAGTTGTATAATTACTA+TGG | + | chr1_4:51656530-51656549 | Msa0168760:three_prime_UTR | 20.0% |
| ! | AGAATTAGTTCCAAGATAAA+AGG | + | chr1_4:51655561-51655580 | Msa0168760:five_prime_UTR | 25.0% |
| ! | ATTTATAGTGATTCCAAAAG+AGG | - | chr1_4:51655822-51655841 | None:intergenic | 25.0% |
| ! | TTGAATGTAAATACATGTGT+CGG | + | chr1_4:51655964-51655983 | Msa0168760:intron | 25.0% |
| ! | AGAATTAGTTCCAAGATAAA+AGG | + | chr1_4:51655561-51655580 | Msa0168760:five_prime_UTR | 25.0% |
| ! | ATTTATAGTGATTCCAAAAG+AGG | - | chr1_4:51655822-51655841 | None:intergenic | 25.0% |
| ! | TTGAATGTAAATACATGTGT+CGG | + | chr1_4:51655964-51655983 | Msa0168760:intron | 25.0% |
| ! | CCATATTACTCCTTTTATCT+TGG | - | chr1_4:51655574-51655593 | None:intergenic | 30.0% |
| CCAAGATAAAAGGAGTAATA+TGG | + | chr1_4:51655571-51655590 | Msa0168760:exon | 30.0% | |
| AGGAGTAATATGGCATTTAA+AGG | + | chr1_4:51655581-51655600 | Msa0168760:exon | 30.0% | |
| GGAGTAATATGGCATTTAAA+GGG | + | chr1_4:51655582-51655601 | Msa0168760:exon | 30.0% | |
| GTATATCATGTGTCTAGTTA+TGG | + | chr1_4:51655604-51655623 | Msa0168760:CDS | 30.0% | |
| CCATTATGTAGTTTAGACAA+GGG | - | chr1_4:51655700-51655719 | None:intergenic | 30.0% | |
| CCTTGTCTAAACTACATAAT+GGG | + | chr1_4:51655698-51655717 | Msa0168760:CDS | 30.0% | |
| TCCCATTGTATAAATTTAGG+TGG | + | chr1_4:51656049-51656068 | Msa0168760:intron | 30.0% | |
| GCCACCTAAATTTATACAAT+GGG | - | chr1_4:51656053-51656072 | None:intergenic | 30.0% | |
| TGCCACCTAAATTTATACAA+TGG | - | chr1_4:51656054-51656073 | None:intergenic | 30.0% | |
| TGTATAAATTTAGGTGGCAA+TGG | + | chr1_4:51656055-51656074 | Msa0168760:intron | 30.0% | |
| ! | CAATTTAGTTGACGTAGTTT+TGG | + | chr1_4:51656301-51656320 | Msa0168760:intron | 30.0% |
| ! | AAAAGTATACCATCAACAGA+TGG | + | chr1_4:51656348-51656367 | Msa0168760:CDS | 30.0% |
| ! | CCATATTACTCCTTTTATCT+TGG | - | chr1_4:51655574-51655593 | None:intergenic | 30.0% |
| CCAAGATAAAAGGAGTAATA+TGG | + | chr1_4:51655571-51655590 | Msa0168760:exon | 30.0% | |
| AGGAGTAATATGGCATTTAA+AGG | + | chr1_4:51655581-51655600 | Msa0168760:exon | 30.0% | |
| GGAGTAATATGGCATTTAAA+GGG | + | chr1_4:51655582-51655601 | Msa0168760:exon | 30.0% | |
| GTATATCATGTGTCTAGTTA+TGG | + | chr1_4:51655604-51655623 | Msa0168760:CDS | 30.0% | |
| CCATTATGTAGTTTAGACAA+GGG | - | chr1_4:51655700-51655719 | None:intergenic | 30.0% | |
| CCTTGTCTAAACTACATAAT+GGG | + | chr1_4:51655698-51655717 | Msa0168760:CDS | 30.0% | |
| TCCCATTGTATAAATTTAGG+TGG | + | chr1_4:51656049-51656068 | Msa0168760:intron | 30.0% | |
| GCCACCTAAATTTATACAAT+GGG | - | chr1_4:51656053-51656072 | None:intergenic | 30.0% | |
| TGCCACCTAAATTTATACAA+TGG | - | chr1_4:51656054-51656073 | None:intergenic | 30.0% | |
| TGTATAAATTTAGGTGGCAA+TGG | + | chr1_4:51656055-51656074 | Msa0168760:intron | 30.0% | |
| ! | CAATTTAGTTGACGTAGTTT+TGG | + | chr1_4:51656301-51656320 | Msa0168760:intron | 30.0% |
| ! | AAAAGTATACCATCAACAGA+TGG | + | chr1_4:51656348-51656367 | Msa0168760:CDS | 30.0% |
| ! | TGCATTTTGTGGACACATAT+TGG | - | chr1_4:51655639-51655658 | None:intergenic | 35.0% |
| CCCTTGTCTAAACTACATAA+TGG | + | chr1_4:51655697-51655716 | Msa0168760:CDS | 35.0% | |
| CCCATTATGTAGTTTAGACA+AGG | - | chr1_4:51655701-51655720 | None:intergenic | 35.0% | |
| TTTGAACCTTACAAGCAGAA+GGG | - | chr1_4:51655865-51655884 | None:intergenic | 35.0% | |
| AAATACATGTGTCGGACAAT+TGG | + | chr1_4:51655972-51655991 | Msa0168760:intron | 35.0% | |
| GACATCAATAGTTCTTCCAT+TGG | - | chr1_4:51656382-51656401 | None:intergenic | 35.0% | |
| ! | TGCATTTTGTGGACACATAT+TGG | - | chr1_4:51655639-51655658 | None:intergenic | 35.0% |
| CCCTTGTCTAAACTACATAA+TGG | + | chr1_4:51655697-51655716 | Msa0168760:CDS | 35.0% | |
| CCCATTATGTAGTTTAGACA+AGG | - | chr1_4:51655701-51655720 | None:intergenic | 35.0% | |
| TTTGAACCTTACAAGCAGAA+GGG | - | chr1_4:51655865-51655884 | None:intergenic | 35.0% | |
| AAATACATGTGTCGGACAAT+TGG | + | chr1_4:51655972-51655991 | Msa0168760:intron | 35.0% | |
| GACATCAATAGTTCTTCCAT+TGG | - | chr1_4:51656382-51656401 | None:intergenic | 35.0% | |
| TGTGAGCAACATGAAGATGA+TGG | - | chr1_4:51655737-51655756 | None:intergenic | 40.0% | |
| ATAGACACTGTGGAGAAGAT+TGG | - | chr1_4:51655775-51655794 | None:intergenic | 40.0% | |
| TGTCTATGTTCCCTGCTTAA+TGG | + | chr1_4:51655788-51655807 | Msa0168760:CDS | 40.0% | |
| GTTTGAACCTTACAAGCAGA+AGG | - | chr1_4:51655866-51655885 | None:intergenic | 40.0% | |
| !! | ATACCTTTGCACTGACTAAC+TGG | - | chr1_4:51655893-51655912 | None:intergenic | 40.0% |
| ! | CTCGTTTTCAACCTAAGTGT+CGG | + | chr1_4:51655996-51656015 | Msa0168760:intron | 40.0% |
| !! | AACCTAAGTGTCGGTACTAA+TGG | + | chr1_4:51656005-51656024 | Msa0168760:intron | 40.0% |
| !! | TTCCATTAGTACCGACACTT+AGG | - | chr1_4:51656010-51656029 | None:intergenic | 40.0% |
| TCCTACAAGTTCAACTTCTC+CGG | + | chr1_4:51656087-51656106 | Msa0168760:CDS | 40.0% | |
| GAATCAGTTGGAGAATCAAC+AGG | - | chr1_4:51656121-51656140 | None:intergenic | 40.0% | |
| ! | GATTCGGTTGAAGAATCAGT+TGG | - | chr1_4:51656133-51656152 | None:intergenic | 40.0% |
| GGAAAATCTGAGTTTGCAGA+AGG | - | chr1_4:51656175-51656194 | None:intergenic | 40.0% | |
| !!! | ACGTAGTTTTGGTGAATTGC+AGG | + | chr1_4:51656312-51656331 | Msa0168760:intron | 40.0% |
| !!! | TAGTTTTGGTGAATTGCAGG+TGG | + | chr1_4:51656315-51656334 | Msa0168760:intron | 40.0% |
| AGTATACCATCAACAGATGG+TGG | + | chr1_4:51656351-51656370 | Msa0168760:CDS | 40.0% | |
| GGTGATGACACAAAACACAA+AGG | - | chr1_4:51656433-51656452 | None:intergenic | 40.0% | |
| GTATGCACAAACTCAGAACT+TGG | - | chr1_4:51656454-51656473 | None:intergenic | 40.0% | |
| TGTGAGCAACATGAAGATGA+TGG | - | chr1_4:51655737-51655756 | None:intergenic | 40.0% | |
| ATAGACACTGTGGAGAAGAT+TGG | - | chr1_4:51655775-51655794 | None:intergenic | 40.0% | |
| TGTCTATGTTCCCTGCTTAA+TGG | + | chr1_4:51655788-51655807 | Msa0168760:CDS | 40.0% | |
| GTTTGAACCTTACAAGCAGA+AGG | - | chr1_4:51655866-51655885 | None:intergenic | 40.0% | |
| !! | ATACCTTTGCACTGACTAAC+TGG | - | chr1_4:51655893-51655912 | None:intergenic | 40.0% |
| ! | CTCGTTTTCAACCTAAGTGT+CGG | + | chr1_4:51655996-51656015 | Msa0168760:intron | 40.0% |
| !! | AACCTAAGTGTCGGTACTAA+TGG | + | chr1_4:51656005-51656024 | Msa0168760:intron | 40.0% |
| !! | TTCCATTAGTACCGACACTT+AGG | - | chr1_4:51656010-51656029 | None:intergenic | 40.0% |
| TCCTACAAGTTCAACTTCTC+CGG | + | chr1_4:51656087-51656106 | Msa0168760:CDS | 40.0% | |
| GAATCAGTTGGAGAATCAAC+AGG | - | chr1_4:51656121-51656140 | None:intergenic | 40.0% | |
| ! | GATTCGGTTGAAGAATCAGT+TGG | - | chr1_4:51656133-51656152 | None:intergenic | 40.0% |
| GGAAAATCTGAGTTTGCAGA+AGG | - | chr1_4:51656175-51656194 | None:intergenic | 40.0% | |
| !!! | ACGTAGTTTTGGTGAATTGC+AGG | + | chr1_4:51656312-51656331 | Msa0168760:intron | 40.0% |
| !!! | TAGTTTTGGTGAATTGCAGG+TGG | + | chr1_4:51656315-51656334 | Msa0168760:intron | 40.0% |
| AGTATACCATCAACAGATGG+TGG | + | chr1_4:51656351-51656370 | Msa0168760:CDS | 40.0% | |
| GGTGATGACACAAAACACAA+AGG | - | chr1_4:51656433-51656452 | None:intergenic | 40.0% | |
| GTATGCACAAACTCAGAACT+TGG | - | chr1_4:51656454-51656473 | None:intergenic | 40.0% | |
| GTGTCTAGTTATGGTCCTAG+TGG | + | chr1_4:51655613-51655632 | Msa0168760:CDS | 45.0% | |
| ! | CCTGATTGAGCTGCATTTTG+TGG | - | chr1_4:51655650-51655669 | None:intergenic | 45.0% |
| CCACAAAATGCAGCTCAATC+AGG | + | chr1_4:51655647-51655666 | Msa0168760:CDS | 45.0% | |
| CTATGTTCCCTGCTTAATGG+TGG | + | chr1_4:51655791-51655810 | Msa0168760:CDS | 45.0% | |
| !!! | AATGGTGGTGGTTCCTCTTT+TGG | + | chr1_4:51655806-51655825 | Msa0168760:CDS | 45.0% |
| TTCTCTCCCTTCTGCTTGTA+AGG | + | chr1_4:51655856-51655875 | Msa0168760:CDS | 45.0% | |
| TACAAGTTCAACTTCTCCGG+CGG | + | chr1_4:51656090-51656109 | Msa0168760:CDS | 45.0% | |
| TCTTCAACCGAATCACCTGA+AGG | + | chr1_4:51656139-51656158 | Msa0168760:CDS | 45.0% | |
| TATTGCGCCTTCAGGTGATT+CGG | - | chr1_4:51656149-51656168 | None:intergenic | 45.0% | |
| ! | GCAAACTCAGATTTTCCCTC+AGG | + | chr1_4:51656178-51656197 | Msa0168760:CDS | 45.0% |
| GTGTCTAGTTATGGTCCTAG+TGG | + | chr1_4:51655613-51655632 | Msa0168760:CDS | 45.0% | |
| ! | CCTGATTGAGCTGCATTTTG+TGG | - | chr1_4:51655650-51655669 | None:intergenic | 45.0% |
| CCACAAAATGCAGCTCAATC+AGG | + | chr1_4:51655647-51655666 | Msa0168760:CDS | 45.0% | |
| CTATGTTCCCTGCTTAATGG+TGG | + | chr1_4:51655791-51655810 | Msa0168760:CDS | 45.0% | |
| !!! | AATGGTGGTGGTTCCTCTTT+TGG | + | chr1_4:51655806-51655825 | Msa0168760:CDS | 45.0% |
| TTCTCTCCCTTCTGCTTGTA+AGG | + | chr1_4:51655856-51655875 | Msa0168760:CDS | 45.0% | |
| TACAAGTTCAACTTCTCCGG+CGG | + | chr1_4:51656090-51656109 | Msa0168760:CDS | 45.0% | |
| TCTTCAACCGAATCACCTGA+AGG | + | chr1_4:51656139-51656158 | Msa0168760:CDS | 45.0% | |
| TATTGCGCCTTCAGGTGATT+CGG | - | chr1_4:51656149-51656168 | None:intergenic | 45.0% | |
| ! | GCAAACTCAGATTTTCCCTC+AGG | + | chr1_4:51656178-51656197 | Msa0168760:CDS | 45.0% |
| GTGGACACATATTGGCCACT+AGG | - | chr1_4:51655631-51655650 | None:intergenic | 50.0% | |
| AGCAGGGAACATAGACACTG+TGG | - | chr1_4:51655785-51655804 | None:intergenic | 50.0% | |
| TGTTCCCTGCTTAATGGTGG+TGG | + | chr1_4:51655794-51655813 | Msa0168760:CDS | 50.0% | |
| GGAACCACCACCATTAAGCA+GGG | - | chr1_4:51655801-51655820 | None:intergenic | 50.0% | |
| AGGAACCACCACCATTAAGC+AGG | - | chr1_4:51655802-51655821 | None:intergenic | 50.0% | |
| !! | CCTTTGCACTGACTAACTGG+TGG | - | chr1_4:51655890-51655909 | None:intergenic | 50.0% |
| CCACCAGTTAGTCAGTGCAA+AGG | + | chr1_4:51655887-51655906 | Msa0168760:CDS | 50.0% | |
| GCCGGAGAAGTTGAACTTGT+AGG | - | chr1_4:51656091-51656110 | None:intergenic | 50.0% | |
| ACAAGTTCAACTTCTCCGGC+GGG | + | chr1_4:51656091-51656110 | Msa0168760:CDS | 50.0% | |
| !! | GAAGGTGTTATTGCGCCTTC+AGG | - | chr1_4:51656157-51656176 | None:intergenic | 50.0% |
| GATGAGCCACCATCTGTTGA+TGG | - | chr1_4:51656360-51656379 | None:intergenic | 50.0% | |
| ! | ACAGATGGTGGCTCATCCAA+TGG | + | chr1_4:51656363-51656382 | Msa0168760:CDS | 50.0% |
| GTGGACACATATTGGCCACT+AGG | - | chr1_4:51655631-51655650 | None:intergenic | 50.0% | |
| AGCAGGGAACATAGACACTG+TGG | - | chr1_4:51655785-51655804 | None:intergenic | 50.0% | |
| TGTTCCCTGCTTAATGGTGG+TGG | + | chr1_4:51655794-51655813 | Msa0168760:CDS | 50.0% | |
| GGAACCACCACCATTAAGCA+GGG | - | chr1_4:51655801-51655820 | None:intergenic | 50.0% | |
| AGGAACCACCACCATTAAGC+AGG | - | chr1_4:51655802-51655821 | None:intergenic | 50.0% | |
| !! | CCTTTGCACTGACTAACTGG+TGG | - | chr1_4:51655890-51655909 | None:intergenic | 50.0% |
| CCACCAGTTAGTCAGTGCAA+AGG | + | chr1_4:51655887-51655906 | Msa0168760:CDS | 50.0% | |
| GCCGGAGAAGTTGAACTTGT+AGG | - | chr1_4:51656091-51656110 | None:intergenic | 50.0% | |
| ACAAGTTCAACTTCTCCGGC+GGG | + | chr1_4:51656091-51656110 | Msa0168760:CDS | 50.0% | |
| !! | GAAGGTGTTATTGCGCCTTC+AGG | - | chr1_4:51656157-51656176 | None:intergenic | 50.0% |
| GATGAGCCACCATCTGTTGA+TGG | - | chr1_4:51656360-51656379 | None:intergenic | 50.0% | |
| ! | ACAGATGGTGGCTCATCCAA+TGG | + | chr1_4:51656363-51656382 | Msa0168760:CDS | 50.0% |
| TGGTGAATTGCAGGTGGAGC+AGG | + | chr1_4:51656321-51656340 | Msa0168760:intron | 55.0% | |
| TGGTGAATTGCAGGTGGAGC+AGG | + | chr1_4:51656321-51656340 | Msa0168760:intron | 55.0% | |
| GAATCAACAGGAGAGCCCGC+CGG | - | chr1_4:51656109-51656128 | None:intergenic | 60.0% | |
| GAATCAACAGGAGAGCCCGC+CGG | - | chr1_4:51656109-51656128 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51655539 | 51656562 | 51655539 | ID=Msa0168760;Name=Msa0168760 |
| chr1_4 | mRNA | 51655539 | 51656562 | 51655539 | ID=Msa0168760-mRNA-1;Parent=Msa0168760;Name=Msa0168760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|1|1|3|101|192 |
| chr1_4 | exon | 51655539 | 51655908 | 51655539 | ID=Msa0168760-mRNA-1:exon:15208;Parent=Msa0168760-mRNA-1 |
| chr1_4 | exon | 51656068 | 51656199 | 51656068 | ID=Msa0168760-mRNA-1:exon:15209;Parent=Msa0168760-mRNA-1 |
| chr1_4 | exon | 51656334 | 51656562 | 51656334 | ID=Msa0168760-mRNA-1:exon:15210;Parent=Msa0168760-mRNA-1 |
| chr1_4 | five_prime_UTR | 51655539 | 51655589 | 51655539 | ID=Msa0168760-mRNA-1:five_prime_utr;Parent=Msa0168760-mRNA-1 |
| chr1_4 | CDS | 51655590 | 51655908 | 51655590 | ID=Msa0168760-mRNA-1:cds;Parent=Msa0168760-mRNA-1 |
| chr1_4 | CDS | 51656068 | 51656199 | 51656068 | ID=Msa0168760-mRNA-1:cds;Parent=Msa0168760-mRNA-1 |
| chr1_4 | CDS | 51656334 | 51656461 | 51656334 | ID=Msa0168760-mRNA-1:cds;Parent=Msa0168760-mRNA-1 |
| chr1_4 | three_prime_UTR | 51656462 | 51656562 | 51656462 | ID=Msa0168760-mRNA-1:three_prime_utr;Parent=Msa0168760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
