Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028710 | XP_024635946.1 | 95.833 | 192 | 4 | 1 | 1 | 192 | 1 | 188 | 4.85e-120 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028710 | sp|Q9LJ86|LTPG5_ARATH | 45.699 | 186 | 74 | 5 | 8 | 189 | 7 | 169 | 2.43e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028710 | Msa0168760 | 0.821636 | 3.634001e-53 | -8.615850e-47 |
| Msa0028710 | Msa0560060 | 0.833297 | 5.781018e-56 | -8.615850e-47 |
| Msa0028710 | Msa1255690 | 0.817952 | 2.524895e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028710 | MtrunA17_Chr1g0185321 | 95.833 | 192 | 4 | 1 | 1 | 192 | 1 | 188 | 4.46e-124 | 347 |
| Msa0028710 | MtrunA17_Chr5g0395001 | 54.098 | 183 | 63 | 3 | 1 | 183 | 1 | 162 | 5.98e-51 | 162 |
| Msa0028710 | MtrunA17_Chr1g0205201 | 45.810 | 179 | 55 | 3 | 10 | 187 | 10 | 147 | 6.23e-44 | 143 |
| Msa0028710 | MtrunA17_Chr1g0205181 | 44.218 | 147 | 61 | 4 | 1 | 137 | 1 | 136 | 1.94e-28 | 103 |
| Msa0028710 | MtrunA17_Chr7g0260061 | 47.482 | 139 | 63 | 4 | 6 | 141 | 8 | 139 | 1.05e-27 | 102 |
| Msa0028710 | MtrunA17_Chr1g0205191 | 60.241 | 83 | 31 | 1 | 24 | 106 | 24 | 104 | 4.35e-27 | 99.4 |
| Msa0028710 | MtrunA17_Chr3g0118471 | 43.529 | 85 | 45 | 2 | 24 | 105 | 46 | 130 | 7.02e-15 | 69.7 |
| Msa0028710 | MtrunA17_Chr5g0394991 | 34.857 | 175 | 87 | 8 | 6 | 155 | 8 | 180 | 3.43e-14 | 68.2 |
| Msa0028710 | MtrunA17_Chr5g0429901 | 35.052 | 97 | 58 | 3 | 28 | 122 | 35 | 128 | 4.39e-12 | 62.0 |
| Msa0028710 | MtrunA17_Chr2g0278971 | 33.588 | 131 | 78 | 5 | 7 | 131 | 52 | 179 | 4.83e-12 | 62.4 |
| Msa0028710 | MtrunA17_Chr8g0378461 | 36.000 | 100 | 60 | 3 | 7 | 105 | 17 | 113 | 1.27e-11 | 60.8 |
| Msa0028710 | MtrunA17_Chr8g0356191 | 32.990 | 97 | 61 | 2 | 1 | 95 | 9 | 103 | 1.30e-11 | 60.8 |
| Msa0028710 | MtrunA17_Chr1g0201291 | 49.254 | 67 | 31 | 2 | 10 | 75 | 10 | 74 | 1.42e-11 | 58.2 |
| Msa0028710 | MtrunA17_Chr6g0484651 | 33.333 | 102 | 62 | 2 | 3 | 99 | 13 | 113 | 1.80e-11 | 58.9 |
| Msa0028710 | MtrunA17_Chr2g0278981 | 28.571 | 126 | 78 | 4 | 6 | 123 | 7 | 128 | 2.31e-11 | 60.1 |
| Msa0028710 | MtrunA17_Chr7g0260071 | 41.346 | 104 | 53 | 5 | 35 | 133 | 41 | 141 | 3.05e-11 | 60.1 |
| Msa0028710 | MtrunA17_Chr7g0219391 | 34.314 | 102 | 63 | 3 | 6 | 105 | 13 | 112 | 7.02e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028710 | AT3G22600.1 | 45.699 | 186 | 74 | 5 | 8 | 189 | 7 | 169 | 2.47e-38 | 130 |
| Msa0028710 | AT2G48130.2 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT2G48130.6 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT2G48130.4 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT2G48130.5 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT2G48130.1 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT2G48130.3 | 41.579 | 190 | 96 | 5 | 1 | 187 | 1 | 178 | 1.14e-36 | 126 |
| Msa0028710 | AT1G03103.1 | 45.604 | 182 | 84 | 4 | 7 | 185 | 2 | 171 | 2.62e-36 | 125 |
| Msa0028710 | AT4G14815.1 | 37.222 | 180 | 72 | 6 | 8 | 186 | 5 | 144 | 9.28e-29 | 105 |
| Msa0028710 | AT3G43720.2 | 32.335 | 167 | 93 | 5 | 28 | 187 | 38 | 191 | 6.05e-16 | 72.8 |
| Msa0028710 | AT3G43720.1 | 34.118 | 170 | 89 | 6 | 28 | 192 | 38 | 189 | 2.30e-14 | 68.6 |
| Msa0028710 | AT1G55260.1 | 28.571 | 168 | 100 | 5 | 25 | 186 | 73 | 226 | 2.69e-14 | 68.9 |
| Msa0028710 | AT1G55260.2 | 28.485 | 165 | 101 | 5 | 25 | 186 | 73 | 223 | 4.80e-14 | 68.2 |
| Msa0028710 | AT2G13820.3 | 35.200 | 125 | 72 | 5 | 8 | 124 | 18 | 141 | 6.18e-14 | 67.4 |
| Msa0028710 | AT2G13820.1 | 35.200 | 125 | 72 | 5 | 8 | 124 | 6 | 129 | 7.71e-14 | 66.6 |
| Msa0028710 | AT2G13820.2 | 36.364 | 99 | 59 | 3 | 10 | 105 | 8 | 105 | 9.74e-14 | 65.5 |
| Msa0028710 | AT1G05450.2 | 41.441 | 111 | 59 | 4 | 30 | 139 | 36 | 141 | 2.53e-13 | 65.9 |
| Msa0028710 | AT5G09370.3 | 35.345 | 116 | 68 | 3 | 26 | 136 | 26 | 139 | 7.16e-13 | 63.9 |
| Msa0028710 | AT4G08670.1 | 35.503 | 169 | 89 | 8 | 26 | 190 | 46 | 198 | 8.68e-13 | 64.7 |
| Msa0028710 | AT5G09370.2 | 37.234 | 94 | 55 | 2 | 26 | 117 | 26 | 117 | 9.96e-13 | 62.8 |
| Msa0028710 | AT5G09370.1 | 37.234 | 94 | 55 | 2 | 26 | 117 | 26 | 117 | 1.40e-12 | 63.2 |
| Msa0028710 | AT2G44290.1 | 31.132 | 106 | 71 | 2 | 1 | 105 | 9 | 113 | 3.95e-12 | 62.8 |
| Msa0028710 | AT2G44300.1 | 26.590 | 173 | 115 | 5 | 25 | 186 | 32 | 203 | 1.82e-11 | 60.8 |
Find 52 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGTGGTGGTTCCTCTTT+TGG | 0.221904 | 1_1:+53735465 | Msa0028710:CDS |
| AGGAGTAATATGGCATTTAA+AGG | 0.269134 | 1_1:+53735240 | Msa0028710:exon |
| AGTTCTGAGTTTGTGCATAC+TGG | 0.276232 | 1_1:+53736133 | Msa0028710:exon |
| AGTTGTATAATTACTATATA+TGG | 0.284690 | 1_1:+53736213 | Msa0028710:three_prime_UTR |
| TTCTCTCCCTTCTGCTTGTA+AGG | 0.292908 | 1_1:+53735515 | Msa0028710:CDS |
| AGAATTAGTTCCAAGATAAA+AGG | 0.298787 | 1_1:+53735220 | Msa0028710:five_prime_UTR |
| ATACCTTTGCACTGACTAAC+TGG | 0.318341 | 1_1:-53735549 | None:intergenic |
| TGTCTATGTTCCCTGCTTAA+TGG | 0.339607 | 1_1:+53735447 | Msa0028710:CDS |
| GAAGGTGTTATTGCGCCTTC+AGG | 0.344331 | 1_1:-53735829 | None:intergenic |
| CCAAGATAAAAGGAGTAATA+TGG | 0.344470 | 1_1:+53735230 | Msa0028710:exon |
| CCCTTGTCTAAACTACATAA+TGG | 0.344834 | 1_1:+53735356 | Msa0028710:CDS |
| ATTTATAGTGATTCCAAAAG+AGG | 0.409101 | 1_1:-53735478 | None:intergenic |
| TGGTCAATTGCAGGTGGAGC+AGG | 0.429072 | 1_1:+53736000 | Msa0028710:intron |
| GAATCAGTTGGAGAATCAAC+AGG | 0.442453 | 1_1:-53735793 | None:intergenic |
| ATAGACACTGTGGAGAAGAT+TGG | 0.447334 | 1_1:-53735431 | None:intergenic |
| GGAGTAATATGGCATTTAAA+GGG | 0.451900 | 1_1:+53735241 | Msa0028710:exon |
| CCTTGTCTAAACTACATAAT+GGG | 0.472776 | 1_1:+53735357 | Msa0028710:CDS |
| GACTTCAATAGTTCTTCCAT+TGG | 0.475359 | 1_1:-53736058 | None:intergenic |
| TATTGCGCCTTCAGGTGATT+CGG | 0.478371 | 1_1:-53735821 | None:intergenic |
| TCCTACAAGTTCAACTTCTC+CGG | 0.480530 | 1_1:+53735762 | Msa0028710:CDS |
| ACTCAAAATGCAGCTCAATC+AGG | 0.480766 | 1_1:+53735306 | Msa0028710:CDS |
| TGTATAAATTTAGGTGGCAA+TGG | 0.490352 | 1_1:+53735730 | Msa0028710:intron |
| AGGAACCACCACCATTAAGC+AGG | 0.501541 | 1_1:-53735458 | None:intergenic |
| TGTTCCCTGCTTAATGGTGG+TGG | 0.504861 | 1_1:+53735453 | Msa0028710:CDS |
| GTATATCCTATGTCTAGTTA+TGG | 0.505225 | 1_1:+53735263 | Msa0028710:CDS |
| GTATGCACAAACTCAGAACT+TGG | 0.526476 | 1_1:-53736130 | None:intergenic |
| GCCGGAGAAGTTGAACTTGT+AGG | 0.526939 | 1_1:-53735763 | None:intergenic |
| GATGAGCCACCATCTGTTGA+TGG | 0.529624 | 1_1:-53736036 | None:intergenic |
| CCCATTATGTAGTTTAGACA+AGG | 0.540572 | 1_1:-53735357 | None:intergenic |
| GAGTACACATATTGGCCACT+AGG | 0.546008 | 1_1:-53735287 | None:intergenic |
| GTTTGAACCTTACAAGCAGA+AGG | 0.551664 | 1_1:-53735522 | None:intergenic |
| GTTCTGAGTTTGTGCATACT+GGG | 0.554164 | 1_1:+53736134 | Msa0028710:exon |
| GATTCGGTTGAAGAATCAGT+TGG | 0.558414 | 1_1:-53735805 | None:intergenic |
| TACAAGTTCAACTTCTCCGG+CGG | 0.564633 | 1_1:+53735765 | Msa0028710:CDS |
| TGTGAGCAACATGAAGATGA+TGG | 0.568265 | 1_1:-53735393 | None:intergenic |
| ACAGATGGTGGCTCATCCAA+TGG | 0.569875 | 1_1:+53736042 | Msa0028710:CDS |
| CTAGGACCATAACTAGACAT+AGG | 0.586523 | 1_1:-53735269 | None:intergenic |
| ACAAGTTCAACTTCTCCGGC+GGG | 0.591404 | 1_1:+53735766 | Msa0028710:CDS |
| ATGTCTAGTTATGGTCCTAG+TGG | 0.598177 | 1_1:+53735272 | Msa0028710:CDS |
| GAATCAACAGGAGAGCCCGC+CGG | 0.608323 | 1_1:-53735781 | None:intergenic |
| CTATGTTCCCTGCTTAATGG+TGG | 0.609944 | 1_1:+53735450 | Msa0028710:CDS |
| AAAAGTATACCATCAACAGA+TGG | 0.613026 | 1_1:+53736027 | Msa0028710:CDS |
| AGTATACCATCAACAGATGG+TGG | 0.617964 | 1_1:+53736030 | Msa0028710:CDS |
| GGAAAATCTGAGTTTGCAGA+AGG | 0.625869 | 1_1:-53735847 | None:intergenic |
| TCTTCAACCGAATCACCTGA+AGG | 0.645912 | 1_1:+53735814 | Msa0028710:CDS |
| CCATTATGTAGTTTAGACAA+GGG | 0.649809 | 1_1:-53735356 | None:intergenic |
| TTTGAACCTTACAAGCAGAA+GGG | 0.651803 | 1_1:-53735521 | None:intergenic |
| CCTTTGCACTGACTAACTGG+TGG | 0.657098 | 1_1:-53735546 | None:intergenic |
| GGAACCACCACCATTAAGCA+GGG | 0.659510 | 1_1:-53735457 | None:intergenic |
| CCACCAGTTAGTCAGTGCAA+AGG | 0.663443 | 1_1:+53735546 | Msa0028710:CDS |
| GGTGATGACACAAAACACAA+TGG | 0.707570 | 1_1:-53736109 | None:intergenic |
| AGCAGGGAACATAGACACTG+TGG | 0.720182 | 1_1:-53735441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCCATTGTATAAATTT+AGG | + | chr1_1:53735721-53735740 | Msa0028710:intron | 15.0% |
| !! | ATAATAATATATTTACCTGA+GGG | - | chr1_1:53735871-53735890 | None:intergenic | 15.0% |
| !!! | GTTTTATATTTACATTTCAT+TGG | + | chr1_1:53736169-53736188 | Msa0028710:three_prime_UTR | 15.0% |
| !! | AGTTGTATAATTACTATATA+TGG | + | chr1_1:53736213-53736232 | Msa0028710:three_prime_UTR | 15.0% |
| !! | TATTTCCATTGTATAAATTT+AGG | + | chr1_1:53735721-53735740 | Msa0028710:intron | 15.0% |
| !! | ATAATAATATATTTACCTGA+GGG | - | chr1_1:53735871-53735890 | None:intergenic | 15.0% |
| !!! | GTTTTATATTTACATTTCAT+TGG | + | chr1_1:53736169-53736188 | Msa0028710:three_prime_UTR | 15.0% |
| !! | AGTTGTATAATTACTATATA+TGG | + | chr1_1:53736213-53736232 | Msa0028710:three_prime_UTR | 15.0% |
| !!! | TAATAGTTGTTTTAGATCAA+TGG | + | chr1_1:53735591-53735610 | Msa0028710:intron | 20.0% |
| !! | CATAATAATATATTTACCTG+AGG | - | chr1_1:53735872-53735891 | None:intergenic | 20.0% |
| !! | AAATTGCTTAAGAAAAAACA+AGG | - | chr1_1:53735966-53735985 | None:intergenic | 20.0% |
| !!! | TAATAGTTGTTTTAGATCAA+TGG | + | chr1_1:53735591-53735610 | Msa0028710:intron | 20.0% |
| !! | CATAATAATATATTTACCTG+AGG | - | chr1_1:53735872-53735891 | None:intergenic | 20.0% |
| !! | AAATTGCTTAAGAAAAAACA+AGG | - | chr1_1:53735966-53735985 | None:intergenic | 20.0% |
| ! | AGAATTAGTTCCAAGATAAA+AGG | + | chr1_1:53735220-53735239 | Msa0028710:five_prime_UTR | 25.0% |
| ! | ATTTATAGTGATTCCAAAAG+AGG | - | chr1_1:53735481-53735500 | None:intergenic | 25.0% |
| ! | TTCCATTGTATAAATTTAGG+TGG | + | chr1_1:53735724-53735743 | Msa0028710:intron | 25.0% |
| ! | AGAATTAGTTCCAAGATAAA+AGG | + | chr1_1:53735220-53735239 | Msa0028710:five_prime_UTR | 25.0% |
| ! | ATTTATAGTGATTCCAAAAG+AGG | - | chr1_1:53735481-53735500 | None:intergenic | 25.0% |
| ! | TTCCATTGTATAAATTTAGG+TGG | + | chr1_1:53735724-53735743 | Msa0028710:intron | 25.0% |
| ! | CCATATTACTCCTTTTATCT+TGG | - | chr1_1:53735233-53735252 | None:intergenic | 30.0% |
| CCAAGATAAAAGGAGTAATA+TGG | + | chr1_1:53735230-53735249 | Msa0028710:exon | 30.0% | |
| AGGAGTAATATGGCATTTAA+AGG | + | chr1_1:53735240-53735259 | Msa0028710:exon | 30.0% | |
| GGAGTAATATGGCATTTAAA+GGG | + | chr1_1:53735241-53735260 | Msa0028710:exon | 30.0% | |
| GTATATCCTATGTCTAGTTA+TGG | + | chr1_1:53735263-53735282 | Msa0028710:CDS | 30.0% | |
| !! | TGCATTTTGAGTACACATAT+TGG | - | chr1_1:53735298-53735317 | None:intergenic | 30.0% |
| CCATTATGTAGTTTAGACAA+GGG | - | chr1_1:53735359-53735378 | None:intergenic | 30.0% | |
| CCTTGTCTAAACTACATAAT+GGG | + | chr1_1:53735357-53735376 | Msa0028710:CDS | 30.0% | |
| TGCCACCTAAATTTATACAA+TGG | - | chr1_1:53735729-53735748 | None:intergenic | 30.0% | |
| TGTATAAATTTAGGTGGCAA+TGG | + | chr1_1:53735730-53735749 | Msa0028710:intron | 30.0% | |
| ! | CAATTTAGTTGACGTAGTTT+TGG | + | chr1_1:53735980-53735999 | Msa0028710:intron | 30.0% |
| ! | AAAAGTATACCATCAACAGA+TGG | + | chr1_1:53736027-53736046 | Msa0028710:CDS | 30.0% |
| ! | CCATATTACTCCTTTTATCT+TGG | - | chr1_1:53735233-53735252 | None:intergenic | 30.0% |
| CCAAGATAAAAGGAGTAATA+TGG | + | chr1_1:53735230-53735249 | Msa0028710:exon | 30.0% | |
| AGGAGTAATATGGCATTTAA+AGG | + | chr1_1:53735240-53735259 | Msa0028710:exon | 30.0% | |
| GGAGTAATATGGCATTTAAA+GGG | + | chr1_1:53735241-53735260 | Msa0028710:exon | 30.0% | |
| GTATATCCTATGTCTAGTTA+TGG | + | chr1_1:53735263-53735282 | Msa0028710:CDS | 30.0% | |
| !! | TGCATTTTGAGTACACATAT+TGG | - | chr1_1:53735298-53735317 | None:intergenic | 30.0% |
| CCATTATGTAGTTTAGACAA+GGG | - | chr1_1:53735359-53735378 | None:intergenic | 30.0% | |
| CCTTGTCTAAACTACATAAT+GGG | + | chr1_1:53735357-53735376 | Msa0028710:CDS | 30.0% | |
| TGCCACCTAAATTTATACAA+TGG | - | chr1_1:53735729-53735748 | None:intergenic | 30.0% | |
| TGTATAAATTTAGGTGGCAA+TGG | + | chr1_1:53735730-53735749 | Msa0028710:intron | 30.0% | |
| ! | CAATTTAGTTGACGTAGTTT+TGG | + | chr1_1:53735980-53735999 | Msa0028710:intron | 30.0% |
| ! | AAAAGTATACCATCAACAGA+TGG | + | chr1_1:53736027-53736046 | Msa0028710:CDS | 30.0% |
| CCCTTGTCTAAACTACATAA+TGG | + | chr1_1:53735356-53735375 | Msa0028710:CDS | 35.0% | |
| CCCATTATGTAGTTTAGACA+AGG | - | chr1_1:53735360-53735379 | None:intergenic | 35.0% | |
| TTTGAACCTTACAAGCAGAA+GGG | - | chr1_1:53735524-53735543 | None:intergenic | 35.0% | |
| ACTAACATGTGTCAGACAAT+TGG | + | chr1_1:53735647-53735666 | Msa0028710:intron | 35.0% | |
| GACTTCAATAGTTCTTCCAT+TGG | - | chr1_1:53736061-53736080 | None:intergenic | 35.0% | |
| CCCTTGTCTAAACTACATAA+TGG | + | chr1_1:53735356-53735375 | Msa0028710:CDS | 35.0% | |
| CCCATTATGTAGTTTAGACA+AGG | - | chr1_1:53735360-53735379 | None:intergenic | 35.0% | |
| TTTGAACCTTACAAGCAGAA+GGG | - | chr1_1:53735524-53735543 | None:intergenic | 35.0% | |
| ACTAACATGTGTCAGACAAT+TGG | + | chr1_1:53735647-53735666 | Msa0028710:intron | 35.0% | |
| GACTTCAATAGTTCTTCCAT+TGG | - | chr1_1:53736061-53736080 | None:intergenic | 35.0% | |
| CTAGGACCATAACTAGACAT+AGG | - | chr1_1:53735272-53735291 | None:intergenic | 40.0% | |
| ATGTCTAGTTATGGTCCTAG+TGG | + | chr1_1:53735272-53735291 | Msa0028710:CDS | 40.0% | |
| ACTCAAAATGCAGCTCAATC+AGG | + | chr1_1:53735306-53735325 | Msa0028710:CDS | 40.0% | |
| TGTGAGCAACATGAAGATGA+TGG | - | chr1_1:53735396-53735415 | None:intergenic | 40.0% | |
| ATAGACACTGTGGAGAAGAT+TGG | - | chr1_1:53735434-53735453 | None:intergenic | 40.0% | |
| TGTCTATGTTCCCTGCTTAA+TGG | + | chr1_1:53735447-53735466 | Msa0028710:CDS | 40.0% | |
| GTTTGAACCTTACAAGCAGA+AGG | - | chr1_1:53735525-53735544 | None:intergenic | 40.0% | |
| !! | ATACCTTTGCACTGACTAAC+TGG | - | chr1_1:53735552-53735571 | None:intergenic | 40.0% |
| ! | CTCGTTTTCAACCTAAGTGT+CGG | + | chr1_1:53735671-53735690 | Msa0028710:intron | 40.0% |
| !! | AACCTAAGTGTCGGTACTAA+TGG | + | chr1_1:53735680-53735699 | Msa0028710:intron | 40.0% |
| !! | TTCCATTAGTACCGACACTT+AGG | - | chr1_1:53735685-53735704 | None:intergenic | 40.0% |
| TCCTACAAGTTCAACTTCTC+CGG | + | chr1_1:53735762-53735781 | Msa0028710:CDS | 40.0% | |
| GAATCAGTTGGAGAATCAAC+AGG | - | chr1_1:53735796-53735815 | None:intergenic | 40.0% | |
| ! | GATTCGGTTGAAGAATCAGT+TGG | - | chr1_1:53735808-53735827 | None:intergenic | 40.0% |
| GGAAAATCTGAGTTTGCAGA+AGG | - | chr1_1:53735850-53735869 | None:intergenic | 40.0% | |
| !!! | ACGTAGTTTTGGTCAATTGC+AGG | + | chr1_1:53735991-53736010 | Msa0028710:intron | 40.0% |
| !!! | TAGTTTTGGTCAATTGCAGG+TGG | + | chr1_1:53735994-53736013 | Msa0028710:intron | 40.0% |
| AGTATACCATCAACAGATGG+TGG | + | chr1_1:53736030-53736049 | Msa0028710:CDS | 40.0% | |
| GGTGATGACACAAAACACAA+TGG | - | chr1_1:53736112-53736131 | None:intergenic | 40.0% | |
| GTATGCACAAACTCAGAACT+TGG | - | chr1_1:53736133-53736152 | None:intergenic | 40.0% | |
| !! | AGTTCTGAGTTTGTGCATAC+TGG | + | chr1_1:53736133-53736152 | Msa0028710:exon | 40.0% |
| ! | GTTCTGAGTTTGTGCATACT+GGG | + | chr1_1:53736134-53736153 | Msa0028710:exon | 40.0% |
| CTAGGACCATAACTAGACAT+AGG | - | chr1_1:53735272-53735291 | None:intergenic | 40.0% | |
| ATGTCTAGTTATGGTCCTAG+TGG | + | chr1_1:53735272-53735291 | Msa0028710:CDS | 40.0% | |
| ACTCAAAATGCAGCTCAATC+AGG | + | chr1_1:53735306-53735325 | Msa0028710:CDS | 40.0% | |
| TGTGAGCAACATGAAGATGA+TGG | - | chr1_1:53735396-53735415 | None:intergenic | 40.0% | |
| ATAGACACTGTGGAGAAGAT+TGG | - | chr1_1:53735434-53735453 | None:intergenic | 40.0% | |
| TGTCTATGTTCCCTGCTTAA+TGG | + | chr1_1:53735447-53735466 | Msa0028710:CDS | 40.0% | |
| GTTTGAACCTTACAAGCAGA+AGG | - | chr1_1:53735525-53735544 | None:intergenic | 40.0% | |
| !! | ATACCTTTGCACTGACTAAC+TGG | - | chr1_1:53735552-53735571 | None:intergenic | 40.0% |
| ! | CTCGTTTTCAACCTAAGTGT+CGG | + | chr1_1:53735671-53735690 | Msa0028710:intron | 40.0% |
| !! | AACCTAAGTGTCGGTACTAA+TGG | + | chr1_1:53735680-53735699 | Msa0028710:intron | 40.0% |
| !! | TTCCATTAGTACCGACACTT+AGG | - | chr1_1:53735685-53735704 | None:intergenic | 40.0% |
| TCCTACAAGTTCAACTTCTC+CGG | + | chr1_1:53735762-53735781 | Msa0028710:CDS | 40.0% | |
| GAATCAGTTGGAGAATCAAC+AGG | - | chr1_1:53735796-53735815 | None:intergenic | 40.0% | |
| ! | GATTCGGTTGAAGAATCAGT+TGG | - | chr1_1:53735808-53735827 | None:intergenic | 40.0% |
| GGAAAATCTGAGTTTGCAGA+AGG | - | chr1_1:53735850-53735869 | None:intergenic | 40.0% | |
| !!! | ACGTAGTTTTGGTCAATTGC+AGG | + | chr1_1:53735991-53736010 | Msa0028710:intron | 40.0% |
| !!! | TAGTTTTGGTCAATTGCAGG+TGG | + | chr1_1:53735994-53736013 | Msa0028710:intron | 40.0% |
| AGTATACCATCAACAGATGG+TGG | + | chr1_1:53736030-53736049 | Msa0028710:CDS | 40.0% | |
| GGTGATGACACAAAACACAA+TGG | - | chr1_1:53736112-53736131 | None:intergenic | 40.0% | |
| GTATGCACAAACTCAGAACT+TGG | - | chr1_1:53736133-53736152 | None:intergenic | 40.0% | |
| !! | AGTTCTGAGTTTGTGCATAC+TGG | + | chr1_1:53736133-53736152 | Msa0028710:exon | 40.0% |
| ! | GTTCTGAGTTTGTGCATACT+GGG | + | chr1_1:53736134-53736153 | Msa0028710:exon | 40.0% |
| GAGTACACATATTGGCCACT+AGG | - | chr1_1:53735290-53735309 | None:intergenic | 45.0% | |
| CTATGTTCCCTGCTTAATGG+TGG | + | chr1_1:53735450-53735469 | Msa0028710:CDS | 45.0% | |
| !!! | AATGGTGGTGGTTCCTCTTT+TGG | + | chr1_1:53735465-53735484 | Msa0028710:CDS | 45.0% |
| TTCTCTCCCTTCTGCTTGTA+AGG | + | chr1_1:53735515-53735534 | Msa0028710:CDS | 45.0% | |
| TACAAGTTCAACTTCTCCGG+CGG | + | chr1_1:53735765-53735784 | Msa0028710:CDS | 45.0% | |
| TCTTCAACCGAATCACCTGA+AGG | + | chr1_1:53735814-53735833 | Msa0028710:CDS | 45.0% | |
| TATTGCGCCTTCAGGTGATT+CGG | - | chr1_1:53735824-53735843 | None:intergenic | 45.0% | |
| ! | GCAAACTCAGATTTTCCCTC+AGG | + | chr1_1:53735853-53735872 | Msa0028710:CDS | 45.0% |
| GAGTACACATATTGGCCACT+AGG | - | chr1_1:53735290-53735309 | None:intergenic | 45.0% | |
| CTATGTTCCCTGCTTAATGG+TGG | + | chr1_1:53735450-53735469 | Msa0028710:CDS | 45.0% | |
| !!! | AATGGTGGTGGTTCCTCTTT+TGG | + | chr1_1:53735465-53735484 | Msa0028710:CDS | 45.0% |
| TTCTCTCCCTTCTGCTTGTA+AGG | + | chr1_1:53735515-53735534 | Msa0028710:CDS | 45.0% | |
| TACAAGTTCAACTTCTCCGG+CGG | + | chr1_1:53735765-53735784 | Msa0028710:CDS | 45.0% | |
| TCTTCAACCGAATCACCTGA+AGG | + | chr1_1:53735814-53735833 | Msa0028710:CDS | 45.0% | |
| TATTGCGCCTTCAGGTGATT+CGG | - | chr1_1:53735824-53735843 | None:intergenic | 45.0% | |
| ! | GCAAACTCAGATTTTCCCTC+AGG | + | chr1_1:53735853-53735872 | Msa0028710:CDS | 45.0% |
| AGCAGGGAACATAGACACTG+TGG | - | chr1_1:53735444-53735463 | None:intergenic | 50.0% | |
| TGTTCCCTGCTTAATGGTGG+TGG | + | chr1_1:53735453-53735472 | Msa0028710:CDS | 50.0% | |
| GGAACCACCACCATTAAGCA+GGG | - | chr1_1:53735460-53735479 | None:intergenic | 50.0% | |
| AGGAACCACCACCATTAAGC+AGG | - | chr1_1:53735461-53735480 | None:intergenic | 50.0% | |
| !! | CCTTTGCACTGACTAACTGG+TGG | - | chr1_1:53735549-53735568 | None:intergenic | 50.0% |
| CCACCAGTTAGTCAGTGCAA+AGG | + | chr1_1:53735546-53735565 | Msa0028710:CDS | 50.0% | |
| GCCGGAGAAGTTGAACTTGT+AGG | - | chr1_1:53735766-53735785 | None:intergenic | 50.0% | |
| ACAAGTTCAACTTCTCCGGC+GGG | + | chr1_1:53735766-53735785 | Msa0028710:CDS | 50.0% | |
| !! | GAAGGTGTTATTGCGCCTTC+AGG | - | chr1_1:53735832-53735851 | None:intergenic | 50.0% |
| GATGAGCCACCATCTGTTGA+TGG | - | chr1_1:53736039-53736058 | None:intergenic | 50.0% | |
| ! | ACAGATGGTGGCTCATCCAA+TGG | + | chr1_1:53736042-53736061 | Msa0028710:CDS | 50.0% |
| AGCAGGGAACATAGACACTG+TGG | - | chr1_1:53735444-53735463 | None:intergenic | 50.0% | |
| TGTTCCCTGCTTAATGGTGG+TGG | + | chr1_1:53735453-53735472 | Msa0028710:CDS | 50.0% | |
| GGAACCACCACCATTAAGCA+GGG | - | chr1_1:53735460-53735479 | None:intergenic | 50.0% | |
| AGGAACCACCACCATTAAGC+AGG | - | chr1_1:53735461-53735480 | None:intergenic | 50.0% | |
| !! | CCTTTGCACTGACTAACTGG+TGG | - | chr1_1:53735549-53735568 | None:intergenic | 50.0% |
| CCACCAGTTAGTCAGTGCAA+AGG | + | chr1_1:53735546-53735565 | Msa0028710:CDS | 50.0% | |
| GCCGGAGAAGTTGAACTTGT+AGG | - | chr1_1:53735766-53735785 | None:intergenic | 50.0% | |
| ACAAGTTCAACTTCTCCGGC+GGG | + | chr1_1:53735766-53735785 | Msa0028710:CDS | 50.0% | |
| !! | GAAGGTGTTATTGCGCCTTC+AGG | - | chr1_1:53735832-53735851 | None:intergenic | 50.0% |
| GATGAGCCACCATCTGTTGA+TGG | - | chr1_1:53736039-53736058 | None:intergenic | 50.0% | |
| ! | ACAGATGGTGGCTCATCCAA+TGG | + | chr1_1:53736042-53736061 | Msa0028710:CDS | 50.0% |
| TGGTCAATTGCAGGTGGAGC+AGG | + | chr1_1:53736000-53736019 | Msa0028710:intron | 55.0% | |
| TGGTCAATTGCAGGTGGAGC+AGG | + | chr1_1:53736000-53736019 | Msa0028710:intron | 55.0% | |
| GAATCAACAGGAGAGCCCGC+CGG | - | chr1_1:53735784-53735803 | None:intergenic | 60.0% | |
| GAATCAACAGGAGAGCCCGC+CGG | - | chr1_1:53735784-53735803 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53735200 | 53736245 | 53735200 | ID=Msa0028710;Name=Msa0028710 |
| chr1_1 | mRNA | 53735200 | 53736245 | 53735200 | ID=Msa0028710-mRNA-1;Parent=Msa0028710;Name=Msa0028710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=49|1|1|1|1|1|3|105|192 |
| chr1_1 | exon | 53735200 | 53735567 | 53735200 | ID=Msa0028710-mRNA-1:exon:15852;Parent=Msa0028710-mRNA-1 |
| chr1_1 | exon | 53735743 | 53735874 | 53735743 | ID=Msa0028710-mRNA-1:exon:15853;Parent=Msa0028710-mRNA-1 |
| chr1_1 | exon | 53736013 | 53736245 | 53736013 | ID=Msa0028710-mRNA-1:exon:15854;Parent=Msa0028710-mRNA-1 |
| chr1_1 | five_prime_UTR | 53735200 | 53735248 | 53735200 | ID=Msa0028710-mRNA-1:five_prime_utr;Parent=Msa0028710-mRNA-1 |
| chr1_1 | CDS | 53735249 | 53735567 | 53735249 | ID=Msa0028710-mRNA-1:cds;Parent=Msa0028710-mRNA-1 |
| chr1_1 | CDS | 53735743 | 53735874 | 53735743 | ID=Msa0028710-mRNA-1:cds;Parent=Msa0028710-mRNA-1 |
| chr1_1 | CDS | 53736013 | 53736140 | 53736013 | ID=Msa0028710-mRNA-1:cds;Parent=Msa0028710-mRNA-1 |
| chr1_1 | three_prime_UTR | 53736141 | 53736245 | 53736141 | ID=Msa0028710-mRNA-1:three_prime_utr;Parent=Msa0028710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
