Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168920 | XP_003590641.1 | 98.421 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168920 | sp|Q93ZQ3|PLP9_ARATH | 70.725 | 386 | 103 | 5 | 1 | 380 | 3 | 384 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168920 | G7IEC3 | 98.421 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 0.0 | 774 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076570 | Msa0168920 | 0.828920 | 6.875388e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168920 | MtrunA17_Chr1g0185551 | 98.421 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 0.0 | 774 |
| Msa0168920 | MtrunA17_Chr7g0259871 | 72.441 | 381 | 97 | 4 | 1 | 375 | 1 | 379 | 0.0 | 545 |
| Msa0168920 | MtrunA17_Chr1g0199801 | 40.217 | 368 | 178 | 6 | 29 | 356 | 74 | 439 | 8.03e-88 | 273 |
| Msa0168920 | MtrunA17_Chr2g0292051 | 37.923 | 414 | 188 | 11 | 1 | 363 | 24 | 419 | 9.98e-72 | 230 |
| Msa0168920 | MtrunA17_Chr5g0402441 | 27.687 | 307 | 193 | 12 | 32 | 313 | 18 | 320 | 2.31e-27 | 111 |
| Msa0168920 | MtrunA17_Chr1g0153781 | 25.074 | 339 | 221 | 10 | 32 | 340 | 23 | 358 | 2.31e-26 | 109 |
| Msa0168920 | MtrunA17_Chr5g0402451 | 26.744 | 344 | 209 | 13 | 32 | 340 | 12 | 347 | 3.59e-26 | 108 |
| Msa0168920 | MtrunA17_Chr8g0335611 | 27.164 | 335 | 212 | 10 | 32 | 343 | 34 | 359 | 5.10e-25 | 105 |
| Msa0168920 | MtrunA17_Chr8g0335621 | 27.164 | 335 | 212 | 10 | 32 | 343 | 65 | 390 | 1.75e-24 | 104 |
| Msa0168920 | MtrunA17_Chr8g0335591 | 29.218 | 243 | 151 | 7 | 32 | 263 | 34 | 266 | 5.20e-23 | 99.8 |
| Msa0168920 | MtrunA17_Chr3g0133691 | 26.667 | 345 | 206 | 11 | 32 | 340 | 22 | 355 | 1.73e-22 | 98.2 |
| Msa0168920 | MtrunA17_Chr3g0133681 | 26.254 | 339 | 215 | 11 | 32 | 340 | 22 | 355 | 4.35e-22 | 97.1 |
| Msa0168920 | MtrunA17_Chr8g0335581 | 26.384 | 307 | 195 | 10 | 32 | 317 | 23 | 319 | 4.41e-22 | 97.1 |
| Msa0168920 | MtrunA17_Chr8g0335651 | 25.574 | 305 | 198 | 10 | 54 | 342 | 53 | 344 | 1.04e-19 | 90.1 |
| Msa0168920 | MtrunA17_Chr8g0335631 | 26.486 | 370 | 230 | 12 | 32 | 378 | 34 | 384 | 3.76e-19 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168920 | AT3G63200.1 | 70.725 | 386 | 103 | 5 | 1 | 380 | 3 | 384 | 0.0 | 556 |
| Msa0168920 | AT2G39220.1 | 43.296 | 358 | 171 | 5 | 29 | 356 | 107 | 462 | 1.74e-90 | 281 |
| Msa0168920 | AT3G54950.1 | 40.988 | 405 | 181 | 9 | 1 | 356 | 54 | 449 | 2.43e-87 | 273 |
| Msa0168920 | AT4G29800.1 | 40.162 | 371 | 169 | 9 | 32 | 356 | 123 | 486 | 1.45e-77 | 248 |
| Msa0168920 | AT4G29800.2 | 39.516 | 372 | 171 | 9 | 32 | 356 | 123 | 487 | 7.52e-76 | 244 |
| Msa0168920 | AT4G37060.1 | 32.028 | 281 | 166 | 8 | 32 | 295 | 21 | 293 | 3.95e-39 | 144 |
| Msa0168920 | AT4G37060.2 | 29.582 | 311 | 165 | 9 | 32 | 295 | 21 | 324 | 3.76e-35 | 134 |
| Msa0168920 | AT4G37070.3 | 28.779 | 344 | 202 | 11 | 32 | 341 | 21 | 355 | 8.84e-33 | 127 |
| Msa0168920 | AT4G37070.1 | 28.779 | 344 | 202 | 11 | 32 | 341 | 21 | 355 | 8.84e-33 | 127 |
| Msa0168920 | AT4G37070.2 | 28.779 | 344 | 202 | 11 | 32 | 341 | 21 | 355 | 1.05e-32 | 127 |
| Msa0168920 | AT4G37070.4 | 27.616 | 344 | 195 | 11 | 32 | 341 | 21 | 344 | 1.07e-28 | 115 |
| Msa0168920 | AT5G43590.1 | 27.168 | 346 | 217 | 9 | 32 | 349 | 16 | 354 | 4.95e-27 | 111 |
| Msa0168920 | AT5G43590.2 | 28.249 | 354 | 203 | 11 | 32 | 349 | 83 | 421 | 1.11e-26 | 111 |
| Msa0168920 | AT4G37050.1 | 27.719 | 285 | 160 | 10 | 49 | 298 | 54 | 327 | 6.20e-24 | 102 |
| Msa0168920 | AT2G26560.1 | 27.532 | 316 | 183 | 12 | 32 | 313 | 21 | 324 | 2.28e-23 | 100 |
Find 109 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGTTGTTGACTTTAA+AGG | 0.194476 | 1_4:+51965834 | Msa0168920:CDS |
| CACGTGCTCAACGCCGTTAA+TGG | 0.278448 | 1_4:+51966215 | Msa0168920:CDS |
| AAGCCATTTGTGTTCGAGTT+TGG | 0.303079 | 1_4:-51965425 | None:intergenic |
| GTGCAACGTCTTGTTGCTAA+TGG | 0.308645 | 1_4:+51966590 | Msa0168920:CDS |
| GAACGGCGTGGAGGATCTTT+TGG | 0.314436 | 1_4:+51966137 | Msa0168920:CDS |
| TACGGATTACGTCAGAATTC+AGG | 0.347197 | 1_4:+51966308 | Msa0168920:CDS |
| TTGTAACAGGCGTTTGGTTT+GGG | 0.353889 | 1_4:+51966467 | Msa0168920:intron |
| TTTGTAACAGGCGTTTGGTT+TGG | 0.357424 | 1_4:+51966466 | Msa0168920:intron |
| CTCTACAAACGCAAATCAAC+CGG | 0.385338 | 1_4:+51965730 | Msa0168920:CDS |
| AGAATGCGTTTCCAAGCATT+TGG | 0.389464 | 1_4:-51966275 | None:intergenic |
| TGAATTCAAAAGGTTTGAAA+TGG | 0.393286 | 1_4:-51965999 | None:intergenic |
| TTCGACATTGTCGCTGGTAC+CGG | 0.395862 | 1_4:+51965601 | Msa0168920:CDS |
| AATCATTAACTCTGGACAAC+TGG | 0.409924 | 1_4:-51966767 | None:intergenic |
| GAGCGTGAGGATCGGAGGTT+TGG | 0.410241 | 1_4:-51965564 | None:intergenic |
| AATGCTGAGAATGCGAGTTT+TGG | 0.419394 | 1_4:-51965473 | None:intergenic |
| TCAAAAGGTTTGAAATGGTT+AGG | 0.422953 | 1_4:-51965994 | None:intergenic |
| TTTCCAAACTCGAACACAAA+TGG | 0.429202 | 1_4:+51965422 | Msa0168920:CDS |
| CTGTTCTTTCTGAATAGAGT+TGG | 0.430559 | 1_4:-51965146 | None:intergenic |
| GCTGTTACATCTCTCGCTAA+TGG | 0.433412 | 1_4:+51966650 | Msa0168920:CDS |
| TTGAATTCACTTCCGTCGAC+GGG | 0.443523 | 1_4:+51966013 | Msa0168920:CDS |
| GAGTATTTCGTCGCCGGTGC+CGG | 0.444213 | 1_4:+51965752 | Msa0168920:CDS |
| GATAATACGAACGGATTCTC+TGG | 0.452919 | 1_4:-51965689 | None:intergenic |
| TTGGTTCTTTCATTGGGAAA+CGG | 0.453399 | 1_4:+51966156 | Msa0168920:CDS |
| ATGGTTGACATTGTTCTTGA+CGG | 0.456691 | 1_4:+51966234 | Msa0168920:CDS |
| CATGACTAAACCACCGTCTA+CGG | 0.459167 | 1_4:-51966052 | None:intergenic |
| TTTAGTGAGATTCTGAATGT+AGG | 0.459212 | 1_4:-51965367 | None:intergenic |
| TTATGAATGAATATAGTTGC+AGG | 0.461156 | 1_4:-51965323 | None:intergenic |
| AAAAGAGTGGAAGGTGAGGA+AGG | 0.463062 | 1_4:-51965266 | None:intergenic |
| CAAGGACTGAACGGTGGACT+TGG | 0.463958 | 1_4:-51966617 | None:intergenic |
| AGAACAATGTCAACCATTAA+CGG | 0.466581 | 1_4:-51966228 | None:intergenic |
| GAGGAAGTGTTGAAGGAAAG+AGG | 0.467634 | 1_4:+51966497 | Msa0168920:CDS |
| TGCTTGGAAACGCATTCTGT+TGG | 0.468643 | 1_4:+51966280 | Msa0168920:CDS |
| GAGACTAACGGAAACAGAAT+CGG | 0.469947 | 1_4:+51966560 | Msa0168920:CDS |
| GGAAAGAGTGTGTCACGGTT+TGG | 0.471582 | 1_4:-51965245 | None:intergenic |
| AAGTGAAGAGGAAGTGTTGA+AGG | 0.478976 | 1_4:+51966490 | Msa0168920:CDS |
| AGGAAGTGTTGAAGGAAAGA+GGG | 0.480873 | 1_4:+51966498 | Msa0168920:CDS |
| GGGTTGGAGTCGTTACCGTT+TGG | 0.482615 | 1_4:+51966518 | Msa0168920:CDS |
| TCGACGGAAGTGAATTCAAA+AGG | 0.487749 | 1_4:-51966009 | None:intergenic |
| GATTTCTTCGACATTGTCGC+TGG | 0.493168 | 1_4:+51965595 | Msa0168920:CDS |
| AGTGTTGAAGGAAAGAGGGT+TGG | 0.493713 | 1_4:+51966502 | Msa0168920:CDS |
| CAGAGTTCGAAGTTGAAGCT+AGG | 0.494303 | 1_4:-51965943 | None:intergenic |
| GAGACGATTGACCAAATGCT+TGG | 0.495301 | 1_4:+51966264 | Msa0168920:CDS |
| TTGGAGTCGTTACCGTTTGG+AGG | 0.498554 | 1_4:+51966521 | Msa0168920:CDS |
| TTGGTGGTGAGAGGAATAAA+TGG | 0.498609 | 1_4:-51965226 | None:intergenic |
| ATCACCGCAGCCGATGCATT+CGG | 0.502588 | 1_4:+51965649 | Msa0168920:CDS |
| TAAAGCAGCGCCGGCTACAA+TGG | 0.502613 | 1_4:-51965515 | None:intergenic |
| TCCTCCACGCCGTTCACCGT+TGG | 0.502660 | 1_4:-51966129 | None:intergenic |
| AAATGGTGGAAATGAATTGA+AGG | 0.506649 | 1_4:-51965209 | None:intergenic |
| TTTGAATTCACTTCCGTCGA+CGG | 0.509205 | 1_4:+51966012 | Msa0168920:CDS |
| AACATGCGTGACTGCGGCGG+CGG | 0.512596 | 1_4:-51966085 | None:intergenic |
| ACTCGCATTCTCAGCATTGA+CGG | 0.513676 | 1_4:+51965478 | Msa0168920:CDS |
| GGAACAACCGCCATTGTAGC+CGG | 0.514821 | 1_4:+51965505 | Msa0168920:CDS |
| ATTGTCGCTGGTACCGGCAT+TGG | 0.515883 | 1_4:+51965607 | Msa0168920:CDS |
| TTGAAGAGAATCTCCGGCAC+CGG | 0.522502 | 1_4:-51965765 | None:intergenic |
| CTAGCTTCAACTTCGAACTC+TGG | 0.523183 | 1_4:+51965944 | Msa0168920:CDS |
| CGTTACCGTTTGGAGGGAAA+CGG | 0.524114 | 1_4:+51966528 | Msa0168920:CDS |
| AGAAGCTAAATCATTAACTC+TGG | 0.526930 | 1_4:-51966775 | None:intergenic |
| TGGAGGGAAACGGTTATTGA+CGG | 0.527447 | 1_4:+51966538 | Msa0168920:CDS |
| CGCATTCTGTTGGAATCGTA+CGG | 0.537202 | 1_4:+51966290 | Msa0168920:CDS |
| TGTTCTTTGAAGAGAATCTC+CGG | 0.539079 | 1_4:-51965771 | None:intergenic |
| TCTGGACAACTGGCATTGCT+AGG | 0.546203 | 1_4:-51966757 | None:intergenic |
| ACCTCTTGCTCCGCCGTAGA+CGG | 0.551267 | 1_4:+51966039 | Msa0168920:CDS |
| AGCAAGAATAGCACCAATGC+CGG | 0.552635 | 1_4:-51965620 | None:intergenic |
| GTTTGGTTTGGGAAGTGAAG+AGG | 0.553372 | 1_4:+51966478 | Msa0168920:CDS |
| AAGCATTTGGTCAATCGTCT+CGG | 0.559192 | 1_4:-51966262 | None:intergenic |
| CGGTTATTGACGGAGACTAA+CGG | 0.566958 | 1_4:+51966548 | Msa0168920:CDS |
| CGAATGGAGCTGAACTCTTG+AGG | 0.567430 | 1_4:-51965891 | None:intergenic |
| ACCGTCTACGGCGGAGCAAG+AGG | 0.568932 | 1_4:-51966040 | None:intergenic |
| TGCGTGACTGCGGCGGCGGT+AGG | 0.569292 | 1_4:-51966081 | None:intergenic |
| TGGAGTCGTTACCGTTTGGA+GGG | 0.569499 | 1_4:+51966522 | Msa0168920:CDS |
| AAATCAACGACGTGAGCGTG+AGG | 0.572164 | 1_4:-51965577 | None:intergenic |
| TTTCTCTGTGATAATACGAA+CGG | 0.572707 | 1_4:-51965698 | None:intergenic |
| ATTCTCAGCATTGACGGCGG+AGG | 0.573961 | 1_4:+51965484 | Msa0168920:CDS |
| GACGGATCTGATCTTCGAGA+TGG | 0.576098 | 1_4:-51965540 | None:intergenic |
| AACGACGTGAGCGTGAGGAT+CGG | 0.580123 | 1_4:-51965572 | None:intergenic |
| TCCACCGTTCAGTCCTTGCA+AGG | 0.582711 | 1_4:+51966622 | Msa0168920:CDS |
| CAACCGGAGTATTTCGTCGC+CGG | 0.582946 | 1_4:+51965746 | Msa0168920:CDS |
| AGGTGTGTGTGTTGTAGTAA+TGG | 0.584582 | 1_4:-51965303 | None:intergenic |
| GATTCTCTGGCAGTGTACAT+TGG | 0.587358 | 1_4:-51965676 | None:intergenic |
| GGTGGAAATGAATTGAAGGA+AGG | 0.592745 | 1_4:-51965205 | None:intergenic |
| GAATCCTTGCAAGGACTGAA+CGG | 0.599507 | 1_4:-51966626 | None:intergenic |
| AGCAGCGCCGGCTACAATGG+CGG | 0.599958 | 1_4:-51965512 | None:intergenic |
| AATAACCGTTTCCCTCCAAA+CGG | 0.603874 | 1_4:-51966533 | None:intergenic |
| TCAAAGCAAGGTATAAGCAA+TGG | 0.604770 | 1_4:-51965868 | None:intergenic |
| GCTAGGAGATTCCGTTGCGT+CGG | 0.605268 | 1_4:-51965926 | None:intergenic |
| ATGGTTAGGTGTTGCTGACG+TGG | 0.605531 | 1_4:-51965980 | None:intergenic |
| GAGATTCTCTTCAAAGAACA+TGG | 0.612147 | 1_4:+51965774 | Msa0168920:CDS |
| CATTGGTCTACCGAATGCAT+CGG | 0.613833 | 1_4:-51965659 | None:intergenic |
| GACGTGAGCGTGAGGATCGG+AGG | 0.616538 | 1_4:-51965569 | None:intergenic |
| TCTTGCTCCGCCGTAGACGG+TGG | 0.618695 | 1_4:+51966042 | Msa0168920:CDS |
| TCTACCGAATGCATCGGCTG+CGG | 0.618791 | 1_4:-51965653 | None:intergenic |
| GTAACAGCTGAATCCTTGCA+AGG | 0.619384 | 1_4:-51966635 | None:intergenic |
| TCCTTGCAAGGACTGAACGG+TGG | 0.622124 | 1_4:-51966623 | None:intergenic |
| GAGATGGATTAAAGCAGCGC+CGG | 0.632030 | 1_4:-51965524 | None:intergenic |
| AAGAACATGCGTGACTGCGG+CGG | 0.648230 | 1_4:-51966088 | None:intergenic |
| TTAACGGCGTTGAGCACGTG+CGG | 0.648903 | 1_4:-51966212 | None:intergenic |
| GAGGATCGGAGGTTTGGAGA+CGG | 0.648909 | 1_4:-51965558 | None:intergenic |
| AAGAGTGTGTCACGGTTTGG+TGG | 0.650704 | 1_4:-51965242 | None:intergenic |
| TAGGTGTTGCTGACGTGGCG+CGG | 0.660160 | 1_4:-51965975 | None:intergenic |
| GACTAAACCACCGTCTACGG+CGG | 0.660165 | 1_4:-51966049 | None:intergenic |
| GTGGAAATGAATTGAAGGAA+GGG | 0.661591 | 1_4:-51965204 | None:intergenic |
| TCCAACGGTGAACGGCGTGG+AGG | 0.667115 | 1_4:+51966128 | Msa0168920:CDS |
| CGCATTCTCAGCATTGACGG+CGG | 0.668863 | 1_4:+51965481 | Msa0168920:CDS |
| GTGAAGAACATGCGTGACTG+CGG | 0.680632 | 1_4:-51966091 | None:intergenic |
| GCACCGGCGACGAAATACTC+CGG | 0.681135 | 1_4:-51965749 | None:intergenic |
| AGGAAGGAAAGAGTGTGTCA+CGG | 0.688688 | 1_4:-51965250 | None:intergenic |
| GAACTCTTGAGGTCAAAGCA+AGG | 0.690315 | 1_4:-51965880 | None:intergenic |
| TGTCACGGTTTGGTGGTGAG+AGG | 0.693298 | 1_4:-51965235 | None:intergenic |
| GTGGTGAGAGGAATAAATGG+TGG | 0.693605 | 1_4:-51965223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTGTTTTCTTTCTTTA+GGG | + | chr1_4:51966800-51966819 | Msa0168920:three_prime_UTR | 20.0% |
| !!! | TCTATTGTTTTCTTTCTTTA+GGG | + | chr1_4:51966800-51966819 | Msa0168920:three_prime_UTR | 20.0% |
| ! | TTATGAATGAATATAGTTGC+AGG | - | chr1_4:51965326-51965345 | None:intergenic | 25.0% |
| ! | ATTCAGAATCTCACTAAAAA+TGG | + | chr1_4:51965372-51965391 | Msa0168920:exon | 25.0% |
| ! | TGAATTCAAAAGGTTTGAAA+TGG | - | chr1_4:51966002-51966021 | None:intergenic | 25.0% |
| !! | GTCTATTGTTTTCTTTCTTT+AGG | + | chr1_4:51966799-51966818 | Msa0168920:three_prime_UTR | 25.0% |
| !! | CTATTGTTTTCTTTCTTTAG+GGG | + | chr1_4:51966801-51966820 | Msa0168920:three_prime_UTR | 25.0% |
| ! | TTATGAATGAATATAGTTGC+AGG | - | chr1_4:51965326-51965345 | None:intergenic | 25.0% |
| ! | ATTCAGAATCTCACTAAAAA+TGG | + | chr1_4:51965372-51965391 | Msa0168920:exon | 25.0% |
| ! | TGAATTCAAAAGGTTTGAAA+TGG | - | chr1_4:51966002-51966021 | None:intergenic | 25.0% |
| !! | GTCTATTGTTTTCTTTCTTT+AGG | + | chr1_4:51966799-51966818 | Msa0168920:three_prime_UTR | 25.0% |
| !! | CTATTGTTTTCTTTCTTTAG+GGG | + | chr1_4:51966801-51966820 | Msa0168920:three_prime_UTR | 25.0% |
| ! | AAATGGTGGAAATGAATTGA+AGG | - | chr1_4:51965212-51965231 | None:intergenic | 30.0% |
| TTTAGTGAGATTCTGAATGT+AGG | - | chr1_4:51965370-51965389 | None:intergenic | 30.0% | |
| TTTCTCTGTGATAATACGAA+CGG | - | chr1_4:51965701-51965720 | None:intergenic | 30.0% | |
| !! | TTCACAGTTGTTGACTTTAA+AGG | + | chr1_4:51965834-51965853 | Msa0168920:CDS | 30.0% |
| ! | TCAAAAGGTTTGAAATGGTT+AGG | - | chr1_4:51965997-51966016 | None:intergenic | 30.0% |
| !!! | GATCTTTTGGTTCTTTCATT+GGG | + | chr1_4:51966150-51966169 | Msa0168920:CDS | 30.0% |
| AGAACAATGTCAACCATTAA+CGG | - | chr1_4:51966231-51966250 | None:intergenic | 30.0% | |
| ATACAGTTACCGTTACTTAA+CGG | + | chr1_4:51966436-51966455 | Msa0168920:intron | 30.0% | |
| AGAAGCTAAATCATTAACTC+TGG | - | chr1_4:51966778-51966797 | None:intergenic | 30.0% | |
| !!! | AACCGAATCTCGATTTTTTA+GGG | - | chr1_4:51966847-51966866 | None:intergenic | 30.0% |
| !!! | AAACCGAATCTCGATTTTTT+AGG | - | chr1_4:51966848-51966867 | None:intergenic | 30.0% |
| ! | AAATGGTGGAAATGAATTGA+AGG | - | chr1_4:51965212-51965231 | None:intergenic | 30.0% |
| TTTAGTGAGATTCTGAATGT+AGG | - | chr1_4:51965370-51965389 | None:intergenic | 30.0% | |
| TTTCTCTGTGATAATACGAA+CGG | - | chr1_4:51965701-51965720 | None:intergenic | 30.0% | |
| !! | TTCACAGTTGTTGACTTTAA+AGG | + | chr1_4:51965834-51965853 | Msa0168920:CDS | 30.0% |
| ! | TCAAAAGGTTTGAAATGGTT+AGG | - | chr1_4:51965997-51966016 | None:intergenic | 30.0% |
| !!! | GATCTTTTGGTTCTTTCATT+GGG | + | chr1_4:51966150-51966169 | Msa0168920:CDS | 30.0% |
| AGAACAATGTCAACCATTAA+CGG | - | chr1_4:51966231-51966250 | None:intergenic | 30.0% | |
| ATACAGTTACCGTTACTTAA+CGG | + | chr1_4:51966436-51966455 | Msa0168920:intron | 30.0% | |
| AGAAGCTAAATCATTAACTC+TGG | - | chr1_4:51966778-51966797 | None:intergenic | 30.0% | |
| !!! | AACCGAATCTCGATTTTTTA+GGG | - | chr1_4:51966847-51966866 | None:intergenic | 30.0% |
| !!! | AAACCGAATCTCGATTTTTT+AGG | - | chr1_4:51966848-51966867 | None:intergenic | 30.0% |
| CTGTTCTTTCTGAATAGAGT+TGG | - | chr1_4:51965149-51965168 | None:intergenic | 35.0% | |
| GTGGAAATGAATTGAAGGAA+GGG | - | chr1_4:51965207-51965226 | None:intergenic | 35.0% | |
| AGTGTGAAAAAAAGAGTGGA+AGG | - | chr1_4:51965278-51965297 | None:intergenic | 35.0% | |
| ! | GAAGAGTGTGAAAAAAAGAG+TGG | - | chr1_4:51965282-51965301 | None:intergenic | 35.0% |
| TTTCCAAACTCGAACACAAA+TGG | + | chr1_4:51965422-51965441 | Msa0168920:CDS | 35.0% | |
| ! | TGTTCTTTGAAGAGAATCTC+CGG | - | chr1_4:51965774-51965793 | None:intergenic | 35.0% |
| GAGATTCTCTTCAAAGAACA+TGG | + | chr1_4:51965774-51965793 | Msa0168920:CDS | 35.0% | |
| TCAAAGCAAGGTATAAGCAA+TGG | - | chr1_4:51965871-51965890 | None:intergenic | 35.0% | |
| ! | CAACAAACGTGATTTTCCAA+CGG | + | chr1_4:51966113-51966132 | Msa0168920:CDS | 35.0% |
| !!! | GGATCTTTTGGTTCTTTCAT+TGG | + | chr1_4:51966149-51966168 | Msa0168920:CDS | 35.0% |
| ! | TTGGTTCTTTCATTGGGAAA+CGG | + | chr1_4:51966156-51966175 | Msa0168920:CDS | 35.0% |
| ATGGTTGACATTGTTCTTGA+CGG | + | chr1_4:51966234-51966253 | Msa0168920:CDS | 35.0% | |
| AAACAAACGCCGTTAAGTAA+CGG | - | chr1_4:51966448-51966467 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTGTAACAGGCGTT+TGG | + | chr1_4:51966461-51966480 | Msa0168920:intron | 35.0% |
| AATCATTAACTCTGGACAAC+TGG | - | chr1_4:51966770-51966789 | None:intergenic | 35.0% | |
| TCCCCTAAAAAATCGAGATT+CGG | + | chr1_4:51966842-51966861 | Msa0168920:three_prime_UTR | 35.0% | |
| !!! | ACCGAATCTCGATTTTTTAG+GGG | - | chr1_4:51966846-51966865 | None:intergenic | 35.0% |
| CTGTTCTTTCTGAATAGAGT+TGG | - | chr1_4:51965149-51965168 | None:intergenic | 35.0% | |
| GTGGAAATGAATTGAAGGAA+GGG | - | chr1_4:51965207-51965226 | None:intergenic | 35.0% | |
| AGTGTGAAAAAAAGAGTGGA+AGG | - | chr1_4:51965278-51965297 | None:intergenic | 35.0% | |
| ! | GAAGAGTGTGAAAAAAAGAG+TGG | - | chr1_4:51965282-51965301 | None:intergenic | 35.0% |
| TTTCCAAACTCGAACACAAA+TGG | + | chr1_4:51965422-51965441 | Msa0168920:CDS | 35.0% | |
| ! | TGTTCTTTGAAGAGAATCTC+CGG | - | chr1_4:51965774-51965793 | None:intergenic | 35.0% |
| GAGATTCTCTTCAAAGAACA+TGG | + | chr1_4:51965774-51965793 | Msa0168920:CDS | 35.0% | |
| TCAAAGCAAGGTATAAGCAA+TGG | - | chr1_4:51965871-51965890 | None:intergenic | 35.0% | |
| ! | CAACAAACGTGATTTTCCAA+CGG | + | chr1_4:51966113-51966132 | Msa0168920:CDS | 35.0% |
| !!! | GGATCTTTTGGTTCTTTCAT+TGG | + | chr1_4:51966149-51966168 | Msa0168920:CDS | 35.0% |
| ! | TTGGTTCTTTCATTGGGAAA+CGG | + | chr1_4:51966156-51966175 | Msa0168920:CDS | 35.0% |
| ATGGTTGACATTGTTCTTGA+CGG | + | chr1_4:51966234-51966253 | Msa0168920:CDS | 35.0% | |
| AAACAAACGCCGTTAAGTAA+CGG | - | chr1_4:51966448-51966467 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTGTAACAGGCGTT+TGG | + | chr1_4:51966461-51966480 | Msa0168920:intron | 35.0% |
| AATCATTAACTCTGGACAAC+TGG | - | chr1_4:51966770-51966789 | None:intergenic | 35.0% | |
| TCCCCTAAAAAATCGAGATT+CGG | + | chr1_4:51966842-51966861 | Msa0168920:three_prime_UTR | 35.0% | |
| !!! | ACCGAATCTCGATTTTTTAG+GGG | - | chr1_4:51966846-51966865 | None:intergenic | 35.0% |
| !!! | GGGTGTGAGTTTTGTTTGTA+CGG | - | chr1_4:51965187-51965206 | None:intergenic | 40.0% |
| GGTGGAAATGAATTGAAGGA+AGG | - | chr1_4:51965208-51965227 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGAGAGGAATAAA+TGG | - | chr1_4:51965229-51965248 | None:intergenic | 40.0% |
| GAAAAAAAGAGTGGAAGGTG+AGG | - | chr1_4:51965273-51965292 | None:intergenic | 40.0% | |
| AGGTGTGTGTGTTGTAGTAA+TGG | - | chr1_4:51965306-51965325 | None:intergenic | 40.0% | |
| ! | AAGCCATTTGTGTTCGAGTT+TGG | - | chr1_4:51965428-51965447 | None:intergenic | 40.0% |
| ! | AATGCTGAGAATGCGAGTTT+TGG | - | chr1_4:51965476-51965495 | None:intergenic | 40.0% |
| ! | GATAATACGAACGGATTCTC+TGG | - | chr1_4:51965692-51965711 | None:intergenic | 40.0% |
| CTCTACAAACGCAAATCAAC+CGG | + | chr1_4:51965730-51965749 | Msa0168920:CDS | 40.0% | |
| TCGACGGAAGTGAATTCAAA+AGG | - | chr1_4:51966012-51966031 | None:intergenic | 40.0% | |
| TTTGAATTCACTTCCGTCGA+CGG | + | chr1_4:51966012-51966031 | Msa0168920:CDS | 40.0% | |
| AAGCATTTGGTCAATCGTCT+CGG | - | chr1_4:51966265-51966284 | None:intergenic | 40.0% | |
| AGAATGCGTTTCCAAGCATT+TGG | - | chr1_4:51966278-51966297 | None:intergenic | 40.0% | |
| ! | TACGGATTACGTCAGAATTC+AGG | + | chr1_4:51966308-51966327 | Msa0168920:CDS | 40.0% |
| !!! | AACGGCGTTTGTTTTGTAAC+AGG | + | chr1_4:51966454-51966473 | Msa0168920:intron | 40.0% |
| TTTGTAACAGGCGTTTGGTT+TGG | + | chr1_4:51966466-51966485 | Msa0168920:intron | 40.0% | |
| ! | TTGTAACAGGCGTTTGGTTT+GGG | + | chr1_4:51966467-51966486 | Msa0168920:intron | 40.0% |
| !! | AAGTGAAGAGGAAGTGTTGA+AGG | + | chr1_4:51966490-51966509 | Msa0168920:CDS | 40.0% |
| !! | AGGAAGTGTTGAAGGAAAGA+GGG | + | chr1_4:51966498-51966517 | Msa0168920:CDS | 40.0% |
| AATAACCGTTTCCCTCCAAA+CGG | - | chr1_4:51966536-51966555 | None:intergenic | 40.0% | |
| GAGACTAACGGAAACAGAAT+CGG | + | chr1_4:51966560-51966579 | Msa0168920:CDS | 40.0% | |
| !!! | GGGTGTGAGTTTTGTTTGTA+CGG | - | chr1_4:51965187-51965206 | None:intergenic | 40.0% |
| GGTGGAAATGAATTGAAGGA+AGG | - | chr1_4:51965208-51965227 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGAGAGGAATAAA+TGG | - | chr1_4:51965229-51965248 | None:intergenic | 40.0% |
| GAAAAAAAGAGTGGAAGGTG+AGG | - | chr1_4:51965273-51965292 | None:intergenic | 40.0% | |
| AGGTGTGTGTGTTGTAGTAA+TGG | - | chr1_4:51965306-51965325 | None:intergenic | 40.0% | |
| ! | AAGCCATTTGTGTTCGAGTT+TGG | - | chr1_4:51965428-51965447 | None:intergenic | 40.0% |
| ! | AATGCTGAGAATGCGAGTTT+TGG | - | chr1_4:51965476-51965495 | None:intergenic | 40.0% |
| ! | GATAATACGAACGGATTCTC+TGG | - | chr1_4:51965692-51965711 | None:intergenic | 40.0% |
| CTCTACAAACGCAAATCAAC+CGG | + | chr1_4:51965730-51965749 | Msa0168920:CDS | 40.0% | |
| TCGACGGAAGTGAATTCAAA+AGG | - | chr1_4:51966012-51966031 | None:intergenic | 40.0% | |
| TTTGAATTCACTTCCGTCGA+CGG | + | chr1_4:51966012-51966031 | Msa0168920:CDS | 40.0% | |
| AAGCATTTGGTCAATCGTCT+CGG | - | chr1_4:51966265-51966284 | None:intergenic | 40.0% | |
| AGAATGCGTTTCCAAGCATT+TGG | - | chr1_4:51966278-51966297 | None:intergenic | 40.0% | |
| ! | TACGGATTACGTCAGAATTC+AGG | + | chr1_4:51966308-51966327 | Msa0168920:CDS | 40.0% |
| !!! | AACGGCGTTTGTTTTGTAAC+AGG | + | chr1_4:51966454-51966473 | Msa0168920:intron | 40.0% |
| TTTGTAACAGGCGTTTGGTT+TGG | + | chr1_4:51966466-51966485 | Msa0168920:intron | 40.0% | |
| ! | TTGTAACAGGCGTTTGGTTT+GGG | + | chr1_4:51966467-51966486 | Msa0168920:intron | 40.0% |
| !! | AAGTGAAGAGGAAGTGTTGA+AGG | + | chr1_4:51966490-51966509 | Msa0168920:CDS | 40.0% |
| !! | AGGAAGTGTTGAAGGAAAGA+GGG | + | chr1_4:51966498-51966517 | Msa0168920:CDS | 40.0% |
| AATAACCGTTTCCCTCCAAA+CGG | - | chr1_4:51966536-51966555 | None:intergenic | 40.0% | |
| GAGACTAACGGAAACAGAAT+CGG | + | chr1_4:51966560-51966579 | Msa0168920:CDS | 40.0% | |
| GTGGTGAGAGGAATAAATGG+TGG | - | chr1_4:51965226-51965245 | None:intergenic | 45.0% | |
| ! | AGGAAGGAAAGAGTGTGTCA+CGG | - | chr1_4:51965253-51965272 | None:intergenic | 45.0% |
| AAAAGAGTGGAAGGTGAGGA+AGG | - | chr1_4:51965269-51965288 | None:intergenic | 45.0% | |
| ! | ACTCGCATTCTCAGCATTGA+CGG | + | chr1_4:51965478-51965497 | Msa0168920:CDS | 45.0% |
| GATTTCTTCGACATTGTCGC+TGG | + | chr1_4:51965595-51965614 | Msa0168920:CDS | 45.0% | |
| AGCAAGAATAGCACCAATGC+CGG | - | chr1_4:51965623-51965642 | None:intergenic | 45.0% | |
| ! | CATTGGTCTACCGAATGCAT+CGG | - | chr1_4:51965662-51965681 | None:intergenic | 45.0% |
| GATTCTCTGGCAGTGTACAT+TGG | - | chr1_4:51965679-51965698 | None:intergenic | 45.0% | |
| GAACTCTTGAGGTCAAAGCA+AGG | - | chr1_4:51965883-51965902 | None:intergenic | 45.0% | |
| ! | TCGGCTCGTGAAAAAACGAA+TGG | - | chr1_4:51965910-51965929 | None:intergenic | 45.0% |
| CAGAGTTCGAAGTTGAAGCT+AGG | - | chr1_4:51965946-51965965 | None:intergenic | 45.0% | |
| CTAGCTTCAACTTCGAACTC+TGG | + | chr1_4:51965944-51965963 | Msa0168920:CDS | 45.0% | |
| TTGAATTCACTTCCGTCGAC+GGG | + | chr1_4:51966013-51966032 | Msa0168920:CDS | 45.0% | |
| CATGACTAAACCACCGTCTA+CGG | - | chr1_4:51966055-51966074 | None:intergenic | 45.0% | |
| ! | CGTGATTTTCCAACGGTGAA+CGG | + | chr1_4:51966120-51966139 | Msa0168920:CDS | 45.0% |
| GAGACGATTGACCAAATGCT+TGG | + | chr1_4:51966264-51966283 | Msa0168920:CDS | 45.0% | |
| TGCTTGGAAACGCATTCTGT+TGG | + | chr1_4:51966280-51966299 | Msa0168920:CDS | 45.0% | |
| CGCATTCTGTTGGAATCGTA+CGG | + | chr1_4:51966290-51966309 | Msa0168920:CDS | 45.0% | |
| !! | GTTTGGTTTGGGAAGTGAAG+AGG | + | chr1_4:51966478-51966497 | Msa0168920:CDS | 45.0% |
| !! | GAGGAAGTGTTGAAGGAAAG+AGG | + | chr1_4:51966497-51966516 | Msa0168920:CDS | 45.0% |
| ! | AGTGTTGAAGGAAAGAGGGT+TGG | + | chr1_4:51966502-51966521 | Msa0168920:CDS | 45.0% |
| TGGAGGGAAACGGTTATTGA+CGG | + | chr1_4:51966538-51966557 | Msa0168920:CDS | 45.0% | |
| CGGTTATTGACGGAGACTAA+CGG | + | chr1_4:51966548-51966567 | Msa0168920:CDS | 45.0% | |
| ! | GTGCAACGTCTTGTTGCTAA+TGG | + | chr1_4:51966590-51966609 | Msa0168920:CDS | 45.0% |
| GAATCCTTGCAAGGACTGAA+CGG | - | chr1_4:51966629-51966648 | None:intergenic | 45.0% | |
| GTAACAGCTGAATCCTTGCA+AGG | - | chr1_4:51966638-51966657 | None:intergenic | 45.0% | |
| GCTGTTACATCTCTCGCTAA+TGG | + | chr1_4:51966650-51966669 | Msa0168920:CDS | 45.0% | |
| GTGGTGAGAGGAATAAATGG+TGG | - | chr1_4:51965226-51965245 | None:intergenic | 45.0% | |
| ! | AGGAAGGAAAGAGTGTGTCA+CGG | - | chr1_4:51965253-51965272 | None:intergenic | 45.0% |
| AAAAGAGTGGAAGGTGAGGA+AGG | - | chr1_4:51965269-51965288 | None:intergenic | 45.0% | |
| ! | ACTCGCATTCTCAGCATTGA+CGG | + | chr1_4:51965478-51965497 | Msa0168920:CDS | 45.0% |
| GATTTCTTCGACATTGTCGC+TGG | + | chr1_4:51965595-51965614 | Msa0168920:CDS | 45.0% | |
| AGCAAGAATAGCACCAATGC+CGG | - | chr1_4:51965623-51965642 | None:intergenic | 45.0% | |
| ! | CATTGGTCTACCGAATGCAT+CGG | - | chr1_4:51965662-51965681 | None:intergenic | 45.0% |
| GATTCTCTGGCAGTGTACAT+TGG | - | chr1_4:51965679-51965698 | None:intergenic | 45.0% | |
| GAACTCTTGAGGTCAAAGCA+AGG | - | chr1_4:51965883-51965902 | None:intergenic | 45.0% | |
| ! | TCGGCTCGTGAAAAAACGAA+TGG | - | chr1_4:51965910-51965929 | None:intergenic | 45.0% |
| CAGAGTTCGAAGTTGAAGCT+AGG | - | chr1_4:51965946-51965965 | None:intergenic | 45.0% | |
| CTAGCTTCAACTTCGAACTC+TGG | + | chr1_4:51965944-51965963 | Msa0168920:CDS | 45.0% | |
| TTGAATTCACTTCCGTCGAC+GGG | + | chr1_4:51966013-51966032 | Msa0168920:CDS | 45.0% | |
| CATGACTAAACCACCGTCTA+CGG | - | chr1_4:51966055-51966074 | None:intergenic | 45.0% | |
| ! | CGTGATTTTCCAACGGTGAA+CGG | + | chr1_4:51966120-51966139 | Msa0168920:CDS | 45.0% |
| GAGACGATTGACCAAATGCT+TGG | + | chr1_4:51966264-51966283 | Msa0168920:CDS | 45.0% | |
| TGCTTGGAAACGCATTCTGT+TGG | + | chr1_4:51966280-51966299 | Msa0168920:CDS | 45.0% | |
| CGCATTCTGTTGGAATCGTA+CGG | + | chr1_4:51966290-51966309 | Msa0168920:CDS | 45.0% | |
| !! | GTTTGGTTTGGGAAGTGAAG+AGG | + | chr1_4:51966478-51966497 | Msa0168920:CDS | 45.0% |
| !! | GAGGAAGTGTTGAAGGAAAG+AGG | + | chr1_4:51966497-51966516 | Msa0168920:CDS | 45.0% |
| ! | AGTGTTGAAGGAAAGAGGGT+TGG | + | chr1_4:51966502-51966521 | Msa0168920:CDS | 45.0% |
| TGGAGGGAAACGGTTATTGA+CGG | + | chr1_4:51966538-51966557 | Msa0168920:CDS | 45.0% | |
| CGGTTATTGACGGAGACTAA+CGG | + | chr1_4:51966548-51966567 | Msa0168920:CDS | 45.0% | |
| ! | GTGCAACGTCTTGTTGCTAA+TGG | + | chr1_4:51966590-51966609 | Msa0168920:CDS | 45.0% |
| GAATCCTTGCAAGGACTGAA+CGG | - | chr1_4:51966629-51966648 | None:intergenic | 45.0% | |
| GTAACAGCTGAATCCTTGCA+AGG | - | chr1_4:51966638-51966657 | None:intergenic | 45.0% | |
| GCTGTTACATCTCTCGCTAA+TGG | + | chr1_4:51966650-51966669 | Msa0168920:CDS | 45.0% | |
| ! | AAGAGTGTGTCACGGTTTGG+TGG | - | chr1_4:51965245-51965264 | None:intergenic | 50.0% |
| ! | GGAAAGAGTGTGTCACGGTT+TGG | - | chr1_4:51965248-51965267 | None:intergenic | 50.0% |
| !! | GCTGAGAATGCGAGTTTTGG+TGG | - | chr1_4:51965473-51965492 | None:intergenic | 50.0% |
| !! | GAGATGGATTAAAGCAGCGC+CGG | - | chr1_4:51965527-51965546 | None:intergenic | 50.0% |
| GACGGATCTGATCTTCGAGA+TGG | - | chr1_4:51965543-51965562 | None:intergenic | 50.0% | |
| AAATCAACGACGTGAGCGTG+AGG | - | chr1_4:51965580-51965599 | None:intergenic | 50.0% | |
| TTCGACATTGTCGCTGGTAC+CGG | + | chr1_4:51965601-51965620 | Msa0168920:CDS | 50.0% | |
| TTGAAGAGAATCTCCGGCAC+CGG | - | chr1_4:51965768-51965787 | None:intergenic | 50.0% | |
| CGAATGGAGCTGAACTCTTG+AGG | - | chr1_4:51965894-51965913 | None:intergenic | 50.0% | |
| ! | TTTTTCACGAGCCGACGCAA+CGG | + | chr1_4:51965915-51965934 | Msa0168920:CDS | 50.0% |
| !! | ATGGTTAGGTGTTGCTGACG+TGG | - | chr1_4:51965983-51966002 | None:intergenic | 50.0% |
| GTGAAGAACATGCGTGACTG+CGG | - | chr1_4:51966094-51966113 | None:intergenic | 50.0% | |
| TTGGAGTCGTTACCGTTTGG+AGG | + | chr1_4:51966521-51966540 | Msa0168920:CDS | 50.0% | |
| TGGAGTCGTTACCGTTTGGA+GGG | + | chr1_4:51966522-51966541 | Msa0168920:CDS | 50.0% | |
| CGTTACCGTTTGGAGGGAAA+CGG | + | chr1_4:51966528-51966547 | Msa0168920:CDS | 50.0% | |
| TCTGGACAACTGGCATTGCT+AGG | - | chr1_4:51966760-51966779 | None:intergenic | 50.0% | |
| ! | AAGAGTGTGTCACGGTTTGG+TGG | - | chr1_4:51965245-51965264 | None:intergenic | 50.0% |
| ! | GGAAAGAGTGTGTCACGGTT+TGG | - | chr1_4:51965248-51965267 | None:intergenic | 50.0% |
| !! | GCTGAGAATGCGAGTTTTGG+TGG | - | chr1_4:51965473-51965492 | None:intergenic | 50.0% |
| !! | GAGATGGATTAAAGCAGCGC+CGG | - | chr1_4:51965527-51965546 | None:intergenic | 50.0% |
| GACGGATCTGATCTTCGAGA+TGG | - | chr1_4:51965543-51965562 | None:intergenic | 50.0% | |
| AAATCAACGACGTGAGCGTG+AGG | - | chr1_4:51965580-51965599 | None:intergenic | 50.0% | |
| TTCGACATTGTCGCTGGTAC+CGG | + | chr1_4:51965601-51965620 | Msa0168920:CDS | 50.0% | |
| TTGAAGAGAATCTCCGGCAC+CGG | - | chr1_4:51965768-51965787 | None:intergenic | 50.0% | |
| CGAATGGAGCTGAACTCTTG+AGG | - | chr1_4:51965894-51965913 | None:intergenic | 50.0% | |
| ! | TTTTTCACGAGCCGACGCAA+CGG | + | chr1_4:51965915-51965934 | Msa0168920:CDS | 50.0% |
| !! | ATGGTTAGGTGTTGCTGACG+TGG | - | chr1_4:51965983-51966002 | None:intergenic | 50.0% |
| GTGAAGAACATGCGTGACTG+CGG | - | chr1_4:51966094-51966113 | None:intergenic | 50.0% | |
| TTGGAGTCGTTACCGTTTGG+AGG | + | chr1_4:51966521-51966540 | Msa0168920:CDS | 50.0% | |
| TGGAGTCGTTACCGTTTGGA+GGG | + | chr1_4:51966522-51966541 | Msa0168920:CDS | 50.0% | |
| CGTTACCGTTTGGAGGGAAA+CGG | + | chr1_4:51966528-51966547 | Msa0168920:CDS | 50.0% | |
| TCTGGACAACTGGCATTGCT+AGG | - | chr1_4:51966760-51966779 | None:intergenic | 50.0% | |
| !! | TGTCACGGTTTGGTGGTGAG+AGG | - | chr1_4:51965238-51965257 | None:intergenic | 55.0% |
| !! | CGCATTCTCAGCATTGACGG+CGG | + | chr1_4:51965481-51965500 | Msa0168920:CDS | 55.0% |
| !! | ATTCTCAGCATTGACGGCGG+AGG | + | chr1_4:51965484-51965503 | Msa0168920:CDS | 55.0% |
| GGAACAACCGCCATTGTAGC+CGG | + | chr1_4:51965505-51965524 | Msa0168920:CDS | 55.0% | |
| !! | TAAAGCAGCGCCGGCTACAA+TGG | - | chr1_4:51965518-51965537 | None:intergenic | 55.0% |
| GAGGATCGGAGGTTTGGAGA+CGG | - | chr1_4:51965561-51965580 | None:intergenic | 55.0% | |
| AACGACGTGAGCGTGAGGAT+CGG | - | chr1_4:51965575-51965594 | None:intergenic | 55.0% | |
| !! | ATTGTCGCTGGTACCGGCAT+TGG | + | chr1_4:51965607-51965626 | Msa0168920:CDS | 55.0% |
| ATCACCGCAGCCGATGCATT+CGG | + | chr1_4:51965649-51965668 | Msa0168920:CDS | 55.0% | |
| !! | TCTACCGAATGCATCGGCTG+CGG | - | chr1_4:51965656-51965675 | None:intergenic | 55.0% |
| ! | CAACCGGAGTATTTCGTCGC+CGG | + | chr1_4:51965746-51965765 | Msa0168920:CDS | 55.0% |
| GCTAGGAGATTCCGTTGCGT+CGG | - | chr1_4:51965929-51965948 | None:intergenic | 55.0% | |
| ! | GCAAGAGGTTTTCCCGTCGA+CGG | - | chr1_4:51966028-51966047 | None:intergenic | 55.0% |
| GACTAAACCACCGTCTACGG+CGG | - | chr1_4:51966052-51966071 | None:intergenic | 55.0% | |
| AAGAACATGCGTGACTGCGG+CGG | - | chr1_4:51966091-51966110 | None:intergenic | 55.0% | |
| ! | TTTTCCAACGGTGAACGGCG+TGG | + | chr1_4:51966125-51966144 | Msa0168920:CDS | 55.0% |
| ! | GAACGGCGTGGAGGATCTTT+TGG | + | chr1_4:51966137-51966156 | Msa0168920:CDS | 55.0% |
| ! | TTAACGGCGTTGAGCACGTG+CGG | - | chr1_4:51966215-51966234 | None:intergenic | 55.0% |
| CACGTGCTCAACGCCGTTAA+TGG | + | chr1_4:51966215-51966234 | Msa0168920:CDS | 55.0% | |
| GGGTTGGAGTCGTTACCGTT+TGG | + | chr1_4:51966518-51966537 | Msa0168920:CDS | 55.0% | |
| ! | CAAGGACTGAACGGTGGACT+TGG | - | chr1_4:51966620-51966639 | None:intergenic | 55.0% |
| TCCACCGTTCAGTCCTTGCA+AGG | + | chr1_4:51966622-51966641 | Msa0168920:CDS | 55.0% | |
| TCCTTGCAAGGACTGAACGG+TGG | - | chr1_4:51966626-51966645 | None:intergenic | 55.0% | |
| !! | TGTCACGGTTTGGTGGTGAG+AGG | - | chr1_4:51965238-51965257 | None:intergenic | 55.0% |
| !! | CGCATTCTCAGCATTGACGG+CGG | + | chr1_4:51965481-51965500 | Msa0168920:CDS | 55.0% |
| !! | ATTCTCAGCATTGACGGCGG+AGG | + | chr1_4:51965484-51965503 | Msa0168920:CDS | 55.0% |
| GGAACAACCGCCATTGTAGC+CGG | + | chr1_4:51965505-51965524 | Msa0168920:CDS | 55.0% | |
| !! | TAAAGCAGCGCCGGCTACAA+TGG | - | chr1_4:51965518-51965537 | None:intergenic | 55.0% |
| GAGGATCGGAGGTTTGGAGA+CGG | - | chr1_4:51965561-51965580 | None:intergenic | 55.0% | |
| AACGACGTGAGCGTGAGGAT+CGG | - | chr1_4:51965575-51965594 | None:intergenic | 55.0% | |
| !! | ATTGTCGCTGGTACCGGCAT+TGG | + | chr1_4:51965607-51965626 | Msa0168920:CDS | 55.0% |
| ATCACCGCAGCCGATGCATT+CGG | + | chr1_4:51965649-51965668 | Msa0168920:CDS | 55.0% | |
| !! | TCTACCGAATGCATCGGCTG+CGG | - | chr1_4:51965656-51965675 | None:intergenic | 55.0% |
| ! | CAACCGGAGTATTTCGTCGC+CGG | + | chr1_4:51965746-51965765 | Msa0168920:CDS | 55.0% |
| GCTAGGAGATTCCGTTGCGT+CGG | - | chr1_4:51965929-51965948 | None:intergenic | 55.0% | |
| ! | GCAAGAGGTTTTCCCGTCGA+CGG | - | chr1_4:51966028-51966047 | None:intergenic | 55.0% |
| GACTAAACCACCGTCTACGG+CGG | - | chr1_4:51966052-51966071 | None:intergenic | 55.0% | |
| AAGAACATGCGTGACTGCGG+CGG | - | chr1_4:51966091-51966110 | None:intergenic | 55.0% | |
| ! | TTTTCCAACGGTGAACGGCG+TGG | + | chr1_4:51966125-51966144 | Msa0168920:CDS | 55.0% |
| ! | GAACGGCGTGGAGGATCTTT+TGG | + | chr1_4:51966137-51966156 | Msa0168920:CDS | 55.0% |
| ! | TTAACGGCGTTGAGCACGTG+CGG | - | chr1_4:51966215-51966234 | None:intergenic | 55.0% |
| CACGTGCTCAACGCCGTTAA+TGG | + | chr1_4:51966215-51966234 | Msa0168920:CDS | 55.0% | |
| GGGTTGGAGTCGTTACCGTT+TGG | + | chr1_4:51966518-51966537 | Msa0168920:CDS | 55.0% | |
| ! | CAAGGACTGAACGGTGGACT+TGG | - | chr1_4:51966620-51966639 | None:intergenic | 55.0% |
| TCCACCGTTCAGTCCTTGCA+AGG | + | chr1_4:51966622-51966641 | Msa0168920:CDS | 55.0% | |
| TCCTTGCAAGGACTGAACGG+TGG | - | chr1_4:51966626-51966645 | None:intergenic | 55.0% | |
| GAGCGTGAGGATCGGAGGTT+TGG | - | chr1_4:51965567-51965586 | None:intergenic | 60.0% | |
| ! | GCACCGGCGACGAAATACTC+CGG | - | chr1_4:51965752-51965771 | None:intergenic | 60.0% |
| GAGTATTTCGTCGCCGGTGC+CGG | + | chr1_4:51965752-51965771 | Msa0168920:CDS | 60.0% | |
| !! | TAGGTGTTGCTGACGTGGCG+CGG | - | chr1_4:51965978-51965997 | None:intergenic | 60.0% |
| ACCTCTTGCTCCGCCGTAGA+CGG | + | chr1_4:51966039-51966058 | Msa0168920:CDS | 60.0% | |
| GAGCGTGAGGATCGGAGGTT+TGG | - | chr1_4:51965567-51965586 | None:intergenic | 60.0% | |
| ! | GCACCGGCGACGAAATACTC+CGG | - | chr1_4:51965752-51965771 | None:intergenic | 60.0% |
| GAGTATTTCGTCGCCGGTGC+CGG | + | chr1_4:51965752-51965771 | Msa0168920:CDS | 60.0% | |
| !! | TAGGTGTTGCTGACGTGGCG+CGG | - | chr1_4:51965978-51965997 | None:intergenic | 60.0% |
| ACCTCTTGCTCCGCCGTAGA+CGG | + | chr1_4:51966039-51966058 | Msa0168920:CDS | 60.0% | |
| !! | AGCAGCGCCGGCTACAATGG+CGG | - | chr1_4:51965515-51965534 | None:intergenic | 65.0% |
| GACGTGAGCGTGAGGATCGG+AGG | - | chr1_4:51965572-51965591 | None:intergenic | 65.0% | |
| ACCGTCTACGGCGGAGCAAG+AGG | - | chr1_4:51966043-51966062 | None:intergenic | 65.0% | |
| TCTTGCTCCGCCGTAGACGG+TGG | + | chr1_4:51966042-51966061 | Msa0168920:CDS | 65.0% | |
| AACATGCGTGACTGCGGCGG+CGG | - | chr1_4:51966088-51966107 | None:intergenic | 65.0% | |
| TCCAACGGTGAACGGCGTGG+AGG | + | chr1_4:51966128-51966147 | Msa0168920:CDS | 65.0% | |
| TCCTCCACGCCGTTCACCGT+TGG | - | chr1_4:51966132-51966151 | None:intergenic | 65.0% | |
| !! | AGCAGCGCCGGCTACAATGG+CGG | - | chr1_4:51965515-51965534 | None:intergenic | 65.0% |
| GACGTGAGCGTGAGGATCGG+AGG | - | chr1_4:51965572-51965591 | None:intergenic | 65.0% | |
| ACCGTCTACGGCGGAGCAAG+AGG | - | chr1_4:51966043-51966062 | None:intergenic | 65.0% | |
| TCTTGCTCCGCCGTAGACGG+TGG | + | chr1_4:51966042-51966061 | Msa0168920:CDS | 65.0% | |
| AACATGCGTGACTGCGGCGG+CGG | - | chr1_4:51966088-51966107 | None:intergenic | 65.0% | |
| TCCAACGGTGAACGGCGTGG+AGG | + | chr1_4:51966128-51966147 | Msa0168920:CDS | 65.0% | |
| TCCTCCACGCCGTTCACCGT+TGG | - | chr1_4:51966132-51966151 | None:intergenic | 65.0% | |
| TGCGTGACTGCGGCGGCGGT+AGG | - | chr1_4:51966084-51966103 | None:intergenic | 75.0% | |
| TGCGTGACTGCGGCGGCGGT+AGG | - | chr1_4:51966084-51966103 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51965133 | 51966898 | 51965133 | ID=Msa0168920;Name=Msa0168920 |
| chr1_4 | mRNA | 51965133 | 51966898 | 51965133 | ID=Msa0168920-mRNA-1;Parent=Msa0168920;Name=Msa0168920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=258|1|1|1|1|1|2|219|380 |
| chr1_4 | exon | 51965133 | 51966329 | 51965133 | ID=Msa0168920-mRNA-1:exon:15270;Parent=Msa0168920-mRNA-1 |
| chr1_4 | exon | 51966476 | 51966898 | 51966476 | ID=Msa0168920-mRNA-1:exon:15271;Parent=Msa0168920-mRNA-1 |
| chr1_4 | five_prime_UTR | 51965133 | 51965390 | 51965133 | ID=Msa0168920-mRNA-1:five_prime_utr;Parent=Msa0168920-mRNA-1 |
| chr1_4 | CDS | 51965391 | 51966329 | 51965391 | ID=Msa0168920-mRNA-1:cds;Parent=Msa0168920-mRNA-1 |
| chr1_4 | CDS | 51966476 | 51966679 | 51966476 | ID=Msa0168920-mRNA-1:cds;Parent=Msa0168920-mRNA-1 |
| chr1_4 | three_prime_UTR | 51966680 | 51966898 | 51966680 | ID=Msa0168920-mRNA-1:three_prime_utr;Parent=Msa0168920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
