Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076570 | XP_003590641.1 | 98.684 | 380 | 5 | 0 | 1 | 380 | 1 | 380 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076570 | sp|Q93ZQ3|PLP9_ARATH | 70.984 | 386 | 102 | 5 | 1 | 380 | 3 | 384 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076570 | G7IEC3 | 98.684 | 380 | 5 | 0 | 1 | 380 | 1 | 380 | 0.0 | 777 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076570 | Msa0168920 | 0.828920 | 6.875388e-55 | -8.615850e-47 |
| Msa0076570 | Msa1294790 | 0.802404 | 5.701746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076570 | MtrunA17_Chr1g0185551 | 98.684 | 380 | 5 | 0 | 1 | 380 | 1 | 380 | 0.0 | 777 |
| Msa0076570 | MtrunA17_Chr7g0259871 | 72.441 | 381 | 97 | 4 | 1 | 375 | 1 | 379 | 0.0 | 545 |
| Msa0076570 | MtrunA17_Chr1g0199801 | 40.217 | 368 | 178 | 6 | 29 | 356 | 74 | 439 | 3.47e-88 | 274 |
| Msa0076570 | MtrunA17_Chr2g0292051 | 37.923 | 414 | 188 | 11 | 1 | 363 | 24 | 419 | 2.21e-72 | 232 |
| Msa0076570 | MtrunA17_Chr5g0402441 | 27.687 | 307 | 193 | 12 | 32 | 313 | 18 | 320 | 1.09e-27 | 112 |
| Msa0076570 | MtrunA17_Chr5g0402451 | 26.744 | 344 | 209 | 13 | 32 | 340 | 12 | 347 | 1.65e-26 | 109 |
| Msa0076570 | MtrunA17_Chr1g0153781 | 24.779 | 339 | 222 | 11 | 32 | 340 | 23 | 358 | 5.84e-26 | 108 |
| Msa0076570 | MtrunA17_Chr8g0335611 | 27.164 | 335 | 212 | 10 | 32 | 343 | 34 | 359 | 2.37e-25 | 106 |
| Msa0076570 | MtrunA17_Chr8g0335621 | 27.164 | 335 | 212 | 10 | 32 | 343 | 65 | 390 | 6.82e-25 | 105 |
| Msa0076570 | MtrunA17_Chr8g0335591 | 29.218 | 243 | 151 | 7 | 32 | 263 | 34 | 266 | 1.97e-23 | 100 |
| Msa0076570 | MtrunA17_Chr3g0133691 | 26.667 | 345 | 206 | 11 | 32 | 340 | 22 | 355 | 7.01e-23 | 99.4 |
| Msa0076570 | MtrunA17_Chr3g0133681 | 26.254 | 339 | 215 | 11 | 32 | 340 | 22 | 355 | 1.47e-22 | 98.2 |
| Msa0076570 | MtrunA17_Chr8g0335581 | 26.384 | 307 | 195 | 9 | 32 | 317 | 23 | 319 | 1.54e-22 | 98.2 |
| Msa0076570 | MtrunA17_Chr8g0335651 | 25.574 | 305 | 198 | 10 | 54 | 342 | 53 | 344 | 3.89e-20 | 91.3 |
| Msa0076570 | MtrunA17_Chr8g0335631 | 26.486 | 370 | 230 | 12 | 32 | 378 | 34 | 384 | 1.34e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076570 | AT3G63200.1 | 70.984 | 386 | 102 | 5 | 1 | 380 | 3 | 384 | 0.0 | 558 |
| Msa0076570 | AT2G39220.1 | 43.296 | 358 | 171 | 5 | 29 | 356 | 107 | 462 | 6.32e-91 | 282 |
| Msa0076570 | AT3G54950.1 | 40.988 | 405 | 181 | 9 | 1 | 356 | 54 | 449 | 9.25e-88 | 274 |
| Msa0076570 | AT4G29800.1 | 40.162 | 371 | 169 | 9 | 32 | 356 | 123 | 486 | 5.88e-78 | 249 |
| Msa0076570 | AT4G29800.2 | 39.516 | 372 | 171 | 9 | 32 | 356 | 123 | 487 | 2.38e-76 | 245 |
| Msa0076570 | AT4G37060.1 | 32.028 | 281 | 166 | 8 | 32 | 295 | 21 | 293 | 1.32e-39 | 145 |
| Msa0076570 | AT4G37060.2 | 29.582 | 311 | 165 | 9 | 32 | 295 | 21 | 324 | 1.40e-35 | 135 |
| Msa0076570 | AT4G37070.3 | 29.893 | 281 | 172 | 7 | 32 | 295 | 21 | 293 | 3.23e-33 | 128 |
| Msa0076570 | AT4G37070.1 | 29.893 | 281 | 172 | 7 | 32 | 295 | 21 | 293 | 3.23e-33 | 128 |
| Msa0076570 | AT4G37070.2 | 28.779 | 344 | 202 | 11 | 32 | 341 | 21 | 355 | 4.44e-33 | 128 |
| Msa0076570 | AT4G37070.4 | 28.470 | 281 | 165 | 7 | 32 | 295 | 21 | 282 | 4.31e-29 | 116 |
| Msa0076570 | AT5G43590.1 | 27.168 | 346 | 217 | 9 | 32 | 349 | 16 | 354 | 1.50e-27 | 112 |
| Msa0076570 | AT5G43590.2 | 27.168 | 346 | 217 | 9 | 32 | 349 | 83 | 421 | 3.74e-27 | 112 |
| Msa0076570 | AT4G37050.1 | 27.719 | 285 | 160 | 10 | 49 | 298 | 54 | 327 | 2.41e-24 | 103 |
| Msa0076570 | AT2G26560.1 | 27.129 | 317 | 183 | 11 | 32 | 313 | 21 | 324 | 2.05e-23 | 101 |
Find 108 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGTTGTTGACTTTAA+AGG | 0.194476 | 1_2:+52727154 | Msa0076570:CDS |
| CACGTGCTCAACGCCGTTAA+TGG | 0.278448 | 1_2:+52727535 | Msa0076570:CDS |
| AAGCCATTTGTGTTCGAGTT+TGG | 0.303079 | 1_2:-52726745 | None:intergenic |
| GAACGGCGTGGAGGATCTTT+TGG | 0.314436 | 1_2:+52727457 | Msa0076570:CDS |
| TACGGATTACGTCAGAATTC+AGG | 0.347197 | 1_2:+52727628 | Msa0076570:CDS |
| TTGTAACAGGCGTTTGGTTT+GGG | 0.353889 | 1_2:+52727788 | Msa0076570:intron |
| TTTGTAACAGGCGTTTGGTT+TGG | 0.357424 | 1_2:+52727787 | Msa0076570:intron |
| AGAATGCGTTTCCAAGCATT+TGG | 0.389464 | 1_2:-52727595 | None:intergenic |
| TGAATTCAAAAGGTTTGAAA+TGG | 0.393286 | 1_2:-52727319 | None:intergenic |
| TTCGACATTGTCGCTGGTAC+CGG | 0.395862 | 1_2:+52726921 | Msa0076570:CDS |
| AATCATTAACTCTGGACAAC+TGG | 0.409924 | 1_2:-52728088 | None:intergenic |
| GAGCGTGAGGATCGGAGGTT+TGG | 0.410241 | 1_2:-52726884 | None:intergenic |
| AATGCTGAGAATGCGAGTTT+TGG | 0.419394 | 1_2:-52726793 | None:intergenic |
| GTTTGAATGAATATAGTTGC+AGG | 0.419955 | 1_2:-52726665 | None:intergenic |
| TCAAAAGGTTTGAAATGGTT+AGG | 0.422953 | 1_2:-52727314 | None:intergenic |
| CTGTTGTTTCTGAACAGAGT+TGG | 0.423556 | 1_2:-52726480 | None:intergenic |
| CTCTACAAACGCAAATCAAC+CGG | 0.426095 | 1_2:+52727050 | Msa0076570:CDS |
| TTTCCAAACTCGAACACAAA+TGG | 0.429202 | 1_2:+52726742 | Msa0076570:CDS |
| GCTGTTACATCTCTCGCTAA+TGG | 0.433412 | 1_2:+52727971 | Msa0076570:CDS |
| TTTAGTGAGTTTCTGAATGT+AGG | 0.440204 | 1_2:-52726687 | None:intergenic |
| GATAATACGAACGGATTCTC+TGG | 0.443876 | 1_2:-52727009 | None:intergenic |
| GAGTATTTCGTCGCCGGTGC+CGG | 0.444213 | 1_2:+52727072 | Msa0076570:CDS |
| TTGGTTCTTTCATTGGGAAA+CGG | 0.453399 | 1_2:+52727476 | Msa0076570:CDS |
| ATGGTTGACATTGTTCTTGA+CGG | 0.456691 | 1_2:+52727554 | Msa0076570:CDS |
| CATGACTAAACCACCGTCTA+CGG | 0.459167 | 1_2:-52727372 | None:intergenic |
| AAAAGAGTGGAAGGTGAGAA+AGG | 0.463342 | 1_2:-52726608 | None:intergenic |
| CAAGGACTGAACGGTGGACT+TGG | 0.463958 | 1_2:-52727938 | None:intergenic |
| AGAACAATGTCAACCATTAA+CGG | 0.466581 | 1_2:-52727548 | None:intergenic |
| GAGGAAGTGTTGAAGGAAAG+AGG | 0.467634 | 1_2:+52727818 | Msa0076570:CDS |
| TGCTTGGAAACGCATTCTGT+TGG | 0.468643 | 1_2:+52727600 | Msa0076570:CDS |
| GAGACTAACGGAAACAGAAT+CGG | 0.469947 | 1_2:+52727881 | Msa0076570:CDS |
| GGAAAGAGTGTGTCACGGTT+TGG | 0.471582 | 1_2:-52726587 | None:intergenic |
| AAGTGAAGAGGAAGTGTTGA+AGG | 0.478976 | 1_2:+52727811 | Msa0076570:CDS |
| AGGAAGTGTTGAAGGAAAGA+GGG | 0.480873 | 1_2:+52727819 | Msa0076570:CDS |
| GGGTTGGAGTCGTTACCGTT+TGG | 0.482615 | 1_2:+52727839 | Msa0076570:CDS |
| TCGACGGAAGTGAATTCAAA+AGG | 0.489043 | 1_2:-52727329 | None:intergenic |
| ATTGTCGCTGGTACCGGCAT+TGG | 0.490072 | 1_2:+52726927 | Msa0076570:CDS |
| TTTGAATTCACTTCCGTCGA+TGG | 0.492928 | 1_2:+52727332 | Msa0076570:CDS |
| GATTTCTTCGACATTGTCGC+TGG | 0.493168 | 1_2:+52726915 | Msa0076570:CDS |
| AGTGTTGAAGGAAAGAGGGT+TGG | 0.493713 | 1_2:+52727823 | Msa0076570:CDS |
| CAGAGTTCGAAGTTGAAGCT+AGG | 0.494303 | 1_2:-52727263 | None:intergenic |
| GAGACGATTGACCAAATGCT+TGG | 0.495301 | 1_2:+52727584 | Msa0076570:CDS |
| TTGGAGTCGTTACCGTTTGG+AGG | 0.498554 | 1_2:+52727842 | Msa0076570:CDS |
| TTGGTGGTGAGAGGAATAAA+TGG | 0.498609 | 1_2:-52726568 | None:intergenic |
| ATCACCGCAGCCGATGCATT+CGG | 0.502588 | 1_2:+52726969 | Msa0076570:CDS |
| TAAAGCAGCGCCGGCTACAA+TGG | 0.502613 | 1_2:-52726835 | None:intergenic |
| TCCTCCACGCCGTTCACCGT+TGG | 0.502660 | 1_2:-52727449 | None:intergenic |
| AACATGCGTGACTGCGGCGG+CGG | 0.512596 | 1_2:-52727405 | None:intergenic |
| AGCAAGGATAGCGCCAATGC+CGG | 0.513559 | 1_2:-52726940 | None:intergenic |
| ACTCGCATTCTCAGCATTGA+CGG | 0.513676 | 1_2:+52726798 | Msa0076570:CDS |
| GGAACAACCGCCATTGTAGC+CGG | 0.514821 | 1_2:+52726825 | Msa0076570:CDS |
| GGAAATGAATTGAAGAATGA+AGG | 0.517301 | 1_2:-52726544 | None:intergenic |
| TTGAAGAGAATCTCCGGCAC+CGG | 0.522502 | 1_2:-52727085 | None:intergenic |
| CTAGCTTCAACTTCGAACTC+TGG | 0.523183 | 1_2:+52727264 | Msa0076570:CDS |
| CGTTACCGTTTGGAGGGAAA+CGG | 0.524114 | 1_2:+52727849 | Msa0076570:CDS |
| AGAAGCTAAATCATTAACTC+TGG | 0.526930 | 1_2:-52728096 | None:intergenic |
| TGGAGGGAAACGGTTATTGA+CGG | 0.527447 | 1_2:+52727859 | Msa0076570:CDS |
| CGCATTCTGTTGGAATCGTA+CGG | 0.537202 | 1_2:+52727610 | Msa0076570:CDS |
| TGTTCTTTGAAGAGAATCTC+CGG | 0.539079 | 1_2:-52727091 | None:intergenic |
| TCTGGACAACTGGCATTGCT+AGG | 0.546203 | 1_2:-52728078 | None:intergenic |
| ACCTCTTGCTCCGCCGTAGA+CGG | 0.553287 | 1_2:+52727359 | Msa0076570:CDS |
| GTTTGGTTTGGGAAGTGAAG+AGG | 0.553372 | 1_2:+52727799 | Msa0076570:CDS |
| AAGCATTTGGTCAATCGTCT+CGG | 0.559192 | 1_2:-52727582 | None:intergenic |
| CGGTTATTGACGGAGACTAA+CGG | 0.566958 | 1_2:+52727869 | Msa0076570:CDS |
| CGAATGGAGCTGAACTCTTG+AGG | 0.567430 | 1_2:-52727211 | None:intergenic |
| ACCGTCTACGGCGGAGCAAG+AGG | 0.568932 | 1_2:-52727360 | None:intergenic |
| TGCGTGACTGCGGCGGCGGT+AGG | 0.569292 | 1_2:-52727401 | None:intergenic |
| TGGAGTCGTTACCGTTTGGA+GGG | 0.569499 | 1_2:+52727843 | Msa0076570:CDS |
| AAATCAACGACGTGAGCGTG+AGG | 0.572164 | 1_2:-52726897 | None:intergenic |
| ATTCTCAGCATTGACGGCGG+AGG | 0.573961 | 1_2:+52726804 | Msa0076570:CDS |
| GACGGATCTGATCTTCGAGA+TGG | 0.576098 | 1_2:-52726860 | None:intergenic |
| AACGACGTGAGCGTGAGGAT+CGG | 0.580123 | 1_2:-52726892 | None:intergenic |
| TCCACCGTTCAGTCCTTGCA+AGG | 0.582711 | 1_2:+52727943 | Msa0076570:CDS |
| CAACCGGAGTATTTCGTCGC+CGG | 0.582946 | 1_2:+52727066 | Msa0076570:CDS |
| GTGCAACGTCTTGTTGCTAA+CGG | 0.583261 | 1_2:+52727911 | Msa0076570:CDS |
| GATTCTCTGGCAGTGTACAT+TGG | 0.587358 | 1_2:-52726996 | None:intergenic |
| GAATCCTTGCAAGGACTGAA+CGG | 0.599507 | 1_2:-52727947 | None:intergenic |
| AGCAGCGCCGGCTACAATGG+CGG | 0.599958 | 1_2:-52726832 | None:intergenic |
| AATAACCGTTTCCCTCCAAA+CGG | 0.603874 | 1_2:-52727854 | None:intergenic |
| TCAAAGCAAGGTATAAGCAA+TGG | 0.604770 | 1_2:-52727188 | None:intergenic |
| GCTAGGAGATTCCGTTGCGT+CGG | 0.605268 | 1_2:-52727246 | None:intergenic |
| TAGGTGTAGCTGACGTGGCG+CGG | 0.609319 | 1_2:-52727295 | None:intergenic |
| GAGATTCTCTTCAAAGAACA+TGG | 0.612147 | 1_2:+52727094 | Msa0076570:CDS |
| GAAATGAATTGAAGAATGAA+GGG | 0.613229 | 1_2:-52726543 | None:intergenic |
| CATTGGTCTACCGAATGCAT+CGG | 0.613833 | 1_2:-52726979 | None:intergenic |
| GACGTGAGCGTGAGGATCGG+AGG | 0.616538 | 1_2:-52726889 | None:intergenic |
| TCTTGCTCCGCCGTAGACGG+TGG | 0.618695 | 1_2:+52727362 | Msa0076570:CDS |
| TCTACCGAATGCATCGGCTG+CGG | 0.618791 | 1_2:-52726973 | None:intergenic |
| GTAACAGCTGAATCCTTGCA+AGG | 0.619384 | 1_2:-52727956 | None:intergenic |
| TCCTTGCAAGGACTGAACGG+TGG | 0.622124 | 1_2:-52727944 | None:intergenic |
| GAGATGGATTAAAGCAGCGC+CGG | 0.632030 | 1_2:-52726844 | None:intergenic |
| AGGTGTGTGTGTTGTAGTAA+TGG | 0.632318 | 1_2:-52726645 | None:intergenic |
| AGAATCCGTTCGTATTATCA+CGG | 0.635301 | 1_2:+52727013 | Msa0076570:CDS |
| AAGAACATGCGTGACTGCGG+CGG | 0.648230 | 1_2:-52727408 | None:intergenic |
| TTAACGGCGTTGAGCACGTG+CGG | 0.648903 | 1_2:-52727532 | None:intergenic |
| GAGGATCGGAGGTTTGGAGA+CGG | 0.648909 | 1_2:-52726878 | None:intergenic |
| AAGAGTGTGTCACGGTTTGG+TGG | 0.650704 | 1_2:-52726584 | None:intergenic |
| ATGGTTAGGTGTAGCTGACG+TGG | 0.650937 | 1_2:-52727300 | None:intergenic |
| CTGCGGTGATCATTGCAGCA+AGG | 0.658132 | 1_2:-52726956 | None:intergenic |
| GACTAAACCACCGTCTACGG+CGG | 0.660165 | 1_2:-52727369 | None:intergenic |
| TCCAACGGTGAACGGCGTGG+AGG | 0.667115 | 1_2:+52727448 | Msa0076570:CDS |
| CGCATTCTCAGCATTGACGG+CGG | 0.668863 | 1_2:+52726801 | Msa0076570:CDS |
| GTGAAGAACATGCGTGACTG+CGG | 0.680632 | 1_2:-52727411 | None:intergenic |
| GCACCGGCGACGAAATACTC+CGG | 0.681135 | 1_2:-52727069 | None:intergenic |
| AGAAAGGAAAGAGTGTGTCA+CGG | 0.688688 | 1_2:-52726592 | None:intergenic |
| GAACTCTTGAGGTCAAAGCA+AGG | 0.690315 | 1_2:-52727200 | None:intergenic |
| TGTCACGGTTTGGTGGTGAG+AGG | 0.693298 | 1_2:-52726577 | None:intergenic |
| GTGGTGAGAGGAATAAATGG+TGG | 0.693605 | 1_2:-52726565 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTGTTTTCTTTCTTTA+GGG | + | chr1_2:52728121-52728140 | Msa0076570:three_prime_UTR | 20.0% |
| !!! | TCTATTGTTTTCTTTCTTTA+GGG | + | chr1_2:52728121-52728140 | Msa0076570:three_prime_UTR | 20.0% |
| ! | GAAATGAATTGAAGAATGAA+GGG | - | chr1_2:52726546-52726565 | None:intergenic | 25.0% |
| ! | ATTCAGAAACTCACTAAAAA+TGG | + | chr1_2:52726692-52726711 | Msa0076570:exon | 25.0% |
| ! | TGAATTCAAAAGGTTTGAAA+TGG | - | chr1_2:52727322-52727341 | None:intergenic | 25.0% |
| !! | GTCTATTGTTTTCTTTCTTT+AGG | + | chr1_2:52728120-52728139 | Msa0076570:three_prime_UTR | 25.0% |
| !! | CTATTGTTTTCTTTCTTTAG+GGG | + | chr1_2:52728122-52728141 | Msa0076570:three_prime_UTR | 25.0% |
| ! | GAAATGAATTGAAGAATGAA+GGG | - | chr1_2:52726546-52726565 | None:intergenic | 25.0% |
| ! | ATTCAGAAACTCACTAAAAA+TGG | + | chr1_2:52726692-52726711 | Msa0076570:exon | 25.0% |
| ! | TGAATTCAAAAGGTTTGAAA+TGG | - | chr1_2:52727322-52727341 | None:intergenic | 25.0% |
| !! | GTCTATTGTTTTCTTTCTTT+AGG | + | chr1_2:52728120-52728139 | Msa0076570:three_prime_UTR | 25.0% |
| !! | CTATTGTTTTCTTTCTTTAG+GGG | + | chr1_2:52728122-52728141 | Msa0076570:three_prime_UTR | 25.0% |
| !!! | TGTGTGAGTTTTGTTTTGTA+CGG | - | chr1_2:52726521-52726540 | None:intergenic | 30.0% |
| GGAAATGAATTGAAGAATGA+AGG | - | chr1_2:52726547-52726566 | None:intergenic | 30.0% | |
| GTTTGAATGAATATAGTTGC+AGG | - | chr1_2:52726668-52726687 | None:intergenic | 30.0% | |
| TTTAGTGAGTTTCTGAATGT+AGG | - | chr1_2:52726690-52726709 | None:intergenic | 30.0% | |
| ! | TTTTTCCGTGATAATACGAA+CGG | - | chr1_2:52727021-52727040 | None:intergenic | 30.0% |
| !! | TTCACAGTTGTTGACTTTAA+AGG | + | chr1_2:52727154-52727173 | Msa0076570:CDS | 30.0% |
| ! | TCAAAAGGTTTGAAATGGTT+AGG | - | chr1_2:52727317-52727336 | None:intergenic | 30.0% |
| !!! | GATCTTTTGGTTCTTTCATT+GGG | + | chr1_2:52727470-52727489 | Msa0076570:CDS | 30.0% |
| AGAACAATGTCAACCATTAA+CGG | - | chr1_2:52727551-52727570 | None:intergenic | 30.0% | |
| ATACAGTTACCGTTACTTAA+CGG | + | chr1_2:52727757-52727776 | Msa0076570:intron | 30.0% | |
| AGAAGCTAAATCATTAACTC+TGG | - | chr1_2:52728099-52728118 | None:intergenic | 30.0% | |
| !!! | TGTGTGAGTTTTGTTTTGTA+CGG | - | chr1_2:52726521-52726540 | None:intergenic | 30.0% |
| GGAAATGAATTGAAGAATGA+AGG | - | chr1_2:52726547-52726566 | None:intergenic | 30.0% | |
| GTTTGAATGAATATAGTTGC+AGG | - | chr1_2:52726668-52726687 | None:intergenic | 30.0% | |
| TTTAGTGAGTTTCTGAATGT+AGG | - | chr1_2:52726690-52726709 | None:intergenic | 30.0% | |
| ! | TTTTTCCGTGATAATACGAA+CGG | - | chr1_2:52727021-52727040 | None:intergenic | 30.0% |
| !! | TTCACAGTTGTTGACTTTAA+AGG | + | chr1_2:52727154-52727173 | Msa0076570:CDS | 30.0% |
| ! | TCAAAAGGTTTGAAATGGTT+AGG | - | chr1_2:52727317-52727336 | None:intergenic | 30.0% |
| !!! | GATCTTTTGGTTCTTTCATT+GGG | + | chr1_2:52727470-52727489 | Msa0076570:CDS | 30.0% |
| AGAACAATGTCAACCATTAA+CGG | - | chr1_2:52727551-52727570 | None:intergenic | 30.0% | |
| ATACAGTTACCGTTACTTAA+CGG | + | chr1_2:52727757-52727776 | Msa0076570:intron | 30.0% | |
| AGAAGCTAAATCATTAACTC+TGG | - | chr1_2:52728099-52728118 | None:intergenic | 30.0% | |
| AGTGTGAAAAAAAGAGTGGA+AGG | - | chr1_2:52726620-52726639 | None:intergenic | 35.0% | |
| ! | GAAGAGTGTGAAAAAAAGAG+TGG | - | chr1_2:52726624-52726643 | None:intergenic | 35.0% |
| TTTCCAAACTCGAACACAAA+TGG | + | chr1_2:52726742-52726761 | Msa0076570:CDS | 35.0% | |
| AGAATCCGTTCGTATTATCA+CGG | + | chr1_2:52727013-52727032 | Msa0076570:CDS | 35.0% | |
| ! | TGTTCTTTGAAGAGAATCTC+CGG | - | chr1_2:52727094-52727113 | None:intergenic | 35.0% |
| GAGATTCTCTTCAAAGAACA+TGG | + | chr1_2:52727094-52727113 | Msa0076570:CDS | 35.0% | |
| TCAAAGCAAGGTATAAGCAA+TGG | - | chr1_2:52727191-52727210 | None:intergenic | 35.0% | |
| ! | CAACAAACGTGATTTTCCAA+CGG | + | chr1_2:52727433-52727452 | Msa0076570:CDS | 35.0% |
| !!! | GGATCTTTTGGTTCTTTCAT+TGG | + | chr1_2:52727469-52727488 | Msa0076570:CDS | 35.0% |
| ! | TTGGTTCTTTCATTGGGAAA+CGG | + | chr1_2:52727476-52727495 | Msa0076570:CDS | 35.0% |
| ATGGTTGACATTGTTCTTGA+CGG | + | chr1_2:52727554-52727573 | Msa0076570:CDS | 35.0% | |
| AAACAAACGCCGTTAAGTAA+CGG | - | chr1_2:52727769-52727788 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTGTAACAGGCGTT+TGG | + | chr1_2:52727782-52727801 | Msa0076570:intron | 35.0% |
| AATCATTAACTCTGGACAAC+TGG | - | chr1_2:52728091-52728110 | None:intergenic | 35.0% | |
| ! | ACCGAATCTCGATCTTTTTA+GGG | - | chr1_2:52728168-52728187 | None:intergenic | 35.0% |
| ! | AACCGAATCTCGATCTTTTT+AGG | - | chr1_2:52728169-52728188 | None:intergenic | 35.0% |
| AGTGTGAAAAAAAGAGTGGA+AGG | - | chr1_2:52726620-52726639 | None:intergenic | 35.0% | |
| ! | GAAGAGTGTGAAAAAAAGAG+TGG | - | chr1_2:52726624-52726643 | None:intergenic | 35.0% |
| TTTCCAAACTCGAACACAAA+TGG | + | chr1_2:52726742-52726761 | Msa0076570:CDS | 35.0% | |
| AGAATCCGTTCGTATTATCA+CGG | + | chr1_2:52727013-52727032 | Msa0076570:CDS | 35.0% | |
| ! | TGTTCTTTGAAGAGAATCTC+CGG | - | chr1_2:52727094-52727113 | None:intergenic | 35.0% |
| GAGATTCTCTTCAAAGAACA+TGG | + | chr1_2:52727094-52727113 | Msa0076570:CDS | 35.0% | |
| TCAAAGCAAGGTATAAGCAA+TGG | - | chr1_2:52727191-52727210 | None:intergenic | 35.0% | |
| ! | CAACAAACGTGATTTTCCAA+CGG | + | chr1_2:52727433-52727452 | Msa0076570:CDS | 35.0% |
| !!! | GGATCTTTTGGTTCTTTCAT+TGG | + | chr1_2:52727469-52727488 | Msa0076570:CDS | 35.0% |
| ! | TTGGTTCTTTCATTGGGAAA+CGG | + | chr1_2:52727476-52727495 | Msa0076570:CDS | 35.0% |
| ATGGTTGACATTGTTCTTGA+CGG | + | chr1_2:52727554-52727573 | Msa0076570:CDS | 35.0% | |
| AAACAAACGCCGTTAAGTAA+CGG | - | chr1_2:52727769-52727788 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTGTAACAGGCGTT+TGG | + | chr1_2:52727782-52727801 | Msa0076570:intron | 35.0% |
| AATCATTAACTCTGGACAAC+TGG | - | chr1_2:52728091-52728110 | None:intergenic | 35.0% | |
| ! | ACCGAATCTCGATCTTTTTA+GGG | - | chr1_2:52728168-52728187 | None:intergenic | 35.0% |
| ! | AACCGAATCTCGATCTTTTT+AGG | - | chr1_2:52728169-52728188 | None:intergenic | 35.0% |
| !! | CTGTTGTTTCTGAACAGAGT+TGG | - | chr1_2:52726483-52726502 | None:intergenic | 40.0% |
| !! | TTGGTGGTGAGAGGAATAAA+TGG | - | chr1_2:52726571-52726590 | None:intergenic | 40.0% |
| ! | AGAAAGGAAAGAGTGTGTCA+CGG | - | chr1_2:52726595-52726614 | None:intergenic | 40.0% |
| AAAAGAGTGGAAGGTGAGAA+AGG | - | chr1_2:52726611-52726630 | None:intergenic | 40.0% | |
| AGGTGTGTGTGTTGTAGTAA+TGG | - | chr1_2:52726648-52726667 | None:intergenic | 40.0% | |
| ! | AAGCCATTTGTGTTCGAGTT+TGG | - | chr1_2:52726748-52726767 | None:intergenic | 40.0% |
| ! | AATGCTGAGAATGCGAGTTT+TGG | - | chr1_2:52726796-52726815 | None:intergenic | 40.0% |
| ! | GATAATACGAACGGATTCTC+TGG | - | chr1_2:52727012-52727031 | None:intergenic | 40.0% |
| CTCTACAAACGCAAATCAAC+CGG | + | chr1_2:52727050-52727069 | Msa0076570:CDS | 40.0% | |
| TCGACGGAAGTGAATTCAAA+AGG | - | chr1_2:52727332-52727351 | None:intergenic | 40.0% | |
| TTTGAATTCACTTCCGTCGA+TGG | + | chr1_2:52727332-52727351 | Msa0076570:CDS | 40.0% | |
| AAGCATTTGGTCAATCGTCT+CGG | - | chr1_2:52727585-52727604 | None:intergenic | 40.0% | |
| AGAATGCGTTTCCAAGCATT+TGG | - | chr1_2:52727598-52727617 | None:intergenic | 40.0% | |
| ! | TACGGATTACGTCAGAATTC+AGG | + | chr1_2:52727628-52727647 | Msa0076570:CDS | 40.0% |
| !!! | AACGGCGTTTGTTTTGTAAC+AGG | + | chr1_2:52727775-52727794 | Msa0076570:intron | 40.0% |
| TTTGTAACAGGCGTTTGGTT+TGG | + | chr1_2:52727787-52727806 | Msa0076570:intron | 40.0% | |
| ! | TTGTAACAGGCGTTTGGTTT+GGG | + | chr1_2:52727788-52727807 | Msa0076570:intron | 40.0% |
| !! | AAGTGAAGAGGAAGTGTTGA+AGG | + | chr1_2:52727811-52727830 | Msa0076570:CDS | 40.0% |
| !! | AGGAAGTGTTGAAGGAAAGA+GGG | + | chr1_2:52727819-52727838 | Msa0076570:CDS | 40.0% |
| AATAACCGTTTCCCTCCAAA+CGG | - | chr1_2:52727857-52727876 | None:intergenic | 40.0% | |
| GAGACTAACGGAAACAGAAT+CGG | + | chr1_2:52727881-52727900 | Msa0076570:CDS | 40.0% | |
| ! | CCGAATCTCGATCTTTTTAG+GGG | - | chr1_2:52728167-52728186 | None:intergenic | 40.0% |
| CCCCTAAAAAGATCGAGATT+CGG | + | chr1_2:52728164-52728183 | Msa0076570:three_prime_UTR | 40.0% | |
| !! | CTGTTGTTTCTGAACAGAGT+TGG | - | chr1_2:52726483-52726502 | None:intergenic | 40.0% |
| !! | TTGGTGGTGAGAGGAATAAA+TGG | - | chr1_2:52726571-52726590 | None:intergenic | 40.0% |
| ! | AGAAAGGAAAGAGTGTGTCA+CGG | - | chr1_2:52726595-52726614 | None:intergenic | 40.0% |
| AAAAGAGTGGAAGGTGAGAA+AGG | - | chr1_2:52726611-52726630 | None:intergenic | 40.0% | |
| AGGTGTGTGTGTTGTAGTAA+TGG | - | chr1_2:52726648-52726667 | None:intergenic | 40.0% | |
| ! | AAGCCATTTGTGTTCGAGTT+TGG | - | chr1_2:52726748-52726767 | None:intergenic | 40.0% |
| ! | AATGCTGAGAATGCGAGTTT+TGG | - | chr1_2:52726796-52726815 | None:intergenic | 40.0% |
| ! | GATAATACGAACGGATTCTC+TGG | - | chr1_2:52727012-52727031 | None:intergenic | 40.0% |
| CTCTACAAACGCAAATCAAC+CGG | + | chr1_2:52727050-52727069 | Msa0076570:CDS | 40.0% | |
| TCGACGGAAGTGAATTCAAA+AGG | - | chr1_2:52727332-52727351 | None:intergenic | 40.0% | |
| TTTGAATTCACTTCCGTCGA+TGG | + | chr1_2:52727332-52727351 | Msa0076570:CDS | 40.0% | |
| AAGCATTTGGTCAATCGTCT+CGG | - | chr1_2:52727585-52727604 | None:intergenic | 40.0% | |
| AGAATGCGTTTCCAAGCATT+TGG | - | chr1_2:52727598-52727617 | None:intergenic | 40.0% | |
| ! | TACGGATTACGTCAGAATTC+AGG | + | chr1_2:52727628-52727647 | Msa0076570:CDS | 40.0% |
| !!! | AACGGCGTTTGTTTTGTAAC+AGG | + | chr1_2:52727775-52727794 | Msa0076570:intron | 40.0% |
| TTTGTAACAGGCGTTTGGTT+TGG | + | chr1_2:52727787-52727806 | Msa0076570:intron | 40.0% | |
| ! | TTGTAACAGGCGTTTGGTTT+GGG | + | chr1_2:52727788-52727807 | Msa0076570:intron | 40.0% |
| !! | AAGTGAAGAGGAAGTGTTGA+AGG | + | chr1_2:52727811-52727830 | Msa0076570:CDS | 40.0% |
| !! | AGGAAGTGTTGAAGGAAAGA+GGG | + | chr1_2:52727819-52727838 | Msa0076570:CDS | 40.0% |
| AATAACCGTTTCCCTCCAAA+CGG | - | chr1_2:52727857-52727876 | None:intergenic | 40.0% | |
| GAGACTAACGGAAACAGAAT+CGG | + | chr1_2:52727881-52727900 | Msa0076570:CDS | 40.0% | |
| ! | CCGAATCTCGATCTTTTTAG+GGG | - | chr1_2:52728167-52728186 | None:intergenic | 40.0% |
| CCCCTAAAAAGATCGAGATT+CGG | + | chr1_2:52728164-52728183 | Msa0076570:three_prime_UTR | 40.0% | |
| GTGGTGAGAGGAATAAATGG+TGG | - | chr1_2:52726568-52726587 | None:intergenic | 45.0% | |
| ! | ACTCGCATTCTCAGCATTGA+CGG | + | chr1_2:52726798-52726817 | Msa0076570:CDS | 45.0% |
| GATTTCTTCGACATTGTCGC+TGG | + | chr1_2:52726915-52726934 | Msa0076570:CDS | 45.0% | |
| ! | CATTGGTCTACCGAATGCAT+CGG | - | chr1_2:52726982-52727001 | None:intergenic | 45.0% |
| GATTCTCTGGCAGTGTACAT+TGG | - | chr1_2:52726999-52727018 | None:intergenic | 45.0% | |
| GAACTCTTGAGGTCAAAGCA+AGG | - | chr1_2:52727203-52727222 | None:intergenic | 45.0% | |
| ! | TCGGCTCGTGAAAAAACGAA+TGG | - | chr1_2:52727230-52727249 | None:intergenic | 45.0% |
| CAGAGTTCGAAGTTGAAGCT+AGG | - | chr1_2:52727266-52727285 | None:intergenic | 45.0% | |
| CTAGCTTCAACTTCGAACTC+TGG | + | chr1_2:52727264-52727283 | Msa0076570:CDS | 45.0% | |
| ! | GCAAGAGGTTTTTCCATCGA+CGG | - | chr1_2:52727348-52727367 | None:intergenic | 45.0% |
| CATGACTAAACCACCGTCTA+CGG | - | chr1_2:52727375-52727394 | None:intergenic | 45.0% | |
| ! | CGTGATTTTCCAACGGTGAA+CGG | + | chr1_2:52727440-52727459 | Msa0076570:CDS | 45.0% |
| GAGACGATTGACCAAATGCT+TGG | + | chr1_2:52727584-52727603 | Msa0076570:CDS | 45.0% | |
| TGCTTGGAAACGCATTCTGT+TGG | + | chr1_2:52727600-52727619 | Msa0076570:CDS | 45.0% | |
| CGCATTCTGTTGGAATCGTA+CGG | + | chr1_2:52727610-52727629 | Msa0076570:CDS | 45.0% | |
| !! | GTTTGGTTTGGGAAGTGAAG+AGG | + | chr1_2:52727799-52727818 | Msa0076570:CDS | 45.0% |
| !! | GAGGAAGTGTTGAAGGAAAG+AGG | + | chr1_2:52727818-52727837 | Msa0076570:CDS | 45.0% |
| ! | AGTGTTGAAGGAAAGAGGGT+TGG | + | chr1_2:52727823-52727842 | Msa0076570:CDS | 45.0% |
| TGGAGGGAAACGGTTATTGA+CGG | + | chr1_2:52727859-52727878 | Msa0076570:CDS | 45.0% | |
| CGGTTATTGACGGAGACTAA+CGG | + | chr1_2:52727869-52727888 | Msa0076570:CDS | 45.0% | |
| ! | GTGCAACGTCTTGTTGCTAA+CGG | + | chr1_2:52727911-52727930 | Msa0076570:CDS | 45.0% |
| GAATCCTTGCAAGGACTGAA+CGG | - | chr1_2:52727950-52727969 | None:intergenic | 45.0% | |
| GTAACAGCTGAATCCTTGCA+AGG | - | chr1_2:52727959-52727978 | None:intergenic | 45.0% | |
| GCTGTTACATCTCTCGCTAA+TGG | + | chr1_2:52727971-52727990 | Msa0076570:CDS | 45.0% | |
| GTGGTGAGAGGAATAAATGG+TGG | - | chr1_2:52726568-52726587 | None:intergenic | 45.0% | |
| ! | ACTCGCATTCTCAGCATTGA+CGG | + | chr1_2:52726798-52726817 | Msa0076570:CDS | 45.0% |
| GATTTCTTCGACATTGTCGC+TGG | + | chr1_2:52726915-52726934 | Msa0076570:CDS | 45.0% | |
| ! | CATTGGTCTACCGAATGCAT+CGG | - | chr1_2:52726982-52727001 | None:intergenic | 45.0% |
| GATTCTCTGGCAGTGTACAT+TGG | - | chr1_2:52726999-52727018 | None:intergenic | 45.0% | |
| GAACTCTTGAGGTCAAAGCA+AGG | - | chr1_2:52727203-52727222 | None:intergenic | 45.0% | |
| ! | TCGGCTCGTGAAAAAACGAA+TGG | - | chr1_2:52727230-52727249 | None:intergenic | 45.0% |
| CAGAGTTCGAAGTTGAAGCT+AGG | - | chr1_2:52727266-52727285 | None:intergenic | 45.0% | |
| CTAGCTTCAACTTCGAACTC+TGG | + | chr1_2:52727264-52727283 | Msa0076570:CDS | 45.0% | |
| ! | GCAAGAGGTTTTTCCATCGA+CGG | - | chr1_2:52727348-52727367 | None:intergenic | 45.0% |
| CATGACTAAACCACCGTCTA+CGG | - | chr1_2:52727375-52727394 | None:intergenic | 45.0% | |
| ! | CGTGATTTTCCAACGGTGAA+CGG | + | chr1_2:52727440-52727459 | Msa0076570:CDS | 45.0% |
| GAGACGATTGACCAAATGCT+TGG | + | chr1_2:52727584-52727603 | Msa0076570:CDS | 45.0% | |
| TGCTTGGAAACGCATTCTGT+TGG | + | chr1_2:52727600-52727619 | Msa0076570:CDS | 45.0% | |
| CGCATTCTGTTGGAATCGTA+CGG | + | chr1_2:52727610-52727629 | Msa0076570:CDS | 45.0% | |
| !! | GTTTGGTTTGGGAAGTGAAG+AGG | + | chr1_2:52727799-52727818 | Msa0076570:CDS | 45.0% |
| !! | GAGGAAGTGTTGAAGGAAAG+AGG | + | chr1_2:52727818-52727837 | Msa0076570:CDS | 45.0% |
| ! | AGTGTTGAAGGAAAGAGGGT+TGG | + | chr1_2:52727823-52727842 | Msa0076570:CDS | 45.0% |
| TGGAGGGAAACGGTTATTGA+CGG | + | chr1_2:52727859-52727878 | Msa0076570:CDS | 45.0% | |
| CGGTTATTGACGGAGACTAA+CGG | + | chr1_2:52727869-52727888 | Msa0076570:CDS | 45.0% | |
| ! | GTGCAACGTCTTGTTGCTAA+CGG | + | chr1_2:52727911-52727930 | Msa0076570:CDS | 45.0% |
| GAATCCTTGCAAGGACTGAA+CGG | - | chr1_2:52727950-52727969 | None:intergenic | 45.0% | |
| GTAACAGCTGAATCCTTGCA+AGG | - | chr1_2:52727959-52727978 | None:intergenic | 45.0% | |
| GCTGTTACATCTCTCGCTAA+TGG | + | chr1_2:52727971-52727990 | Msa0076570:CDS | 45.0% | |
| ! | AAGAGTGTGTCACGGTTTGG+TGG | - | chr1_2:52726587-52726606 | None:intergenic | 50.0% |
| ! | GGAAAGAGTGTGTCACGGTT+TGG | - | chr1_2:52726590-52726609 | None:intergenic | 50.0% |
| !! | GCTGAGAATGCGAGTTTTGG+TGG | - | chr1_2:52726793-52726812 | None:intergenic | 50.0% |
| !! | GAGATGGATTAAAGCAGCGC+CGG | - | chr1_2:52726847-52726866 | None:intergenic | 50.0% |
| GACGGATCTGATCTTCGAGA+TGG | - | chr1_2:52726863-52726882 | None:intergenic | 50.0% | |
| AAATCAACGACGTGAGCGTG+AGG | - | chr1_2:52726900-52726919 | None:intergenic | 50.0% | |
| TTCGACATTGTCGCTGGTAC+CGG | + | chr1_2:52726921-52726940 | Msa0076570:CDS | 50.0% | |
| TTGAAGAGAATCTCCGGCAC+CGG | - | chr1_2:52727088-52727107 | None:intergenic | 50.0% | |
| CGAATGGAGCTGAACTCTTG+AGG | - | chr1_2:52727214-52727233 | None:intergenic | 50.0% | |
| ! | TTTTTCACGAGCCGACGCAA+CGG | + | chr1_2:52727235-52727254 | Msa0076570:CDS | 50.0% |
| ATGGTTAGGTGTAGCTGACG+TGG | - | chr1_2:52727303-52727322 | None:intergenic | 50.0% | |
| GTGAAGAACATGCGTGACTG+CGG | - | chr1_2:52727414-52727433 | None:intergenic | 50.0% | |
| TTGGAGTCGTTACCGTTTGG+AGG | + | chr1_2:52727842-52727861 | Msa0076570:CDS | 50.0% | |
| TGGAGTCGTTACCGTTTGGA+GGG | + | chr1_2:52727843-52727862 | Msa0076570:CDS | 50.0% | |
| CGTTACCGTTTGGAGGGAAA+CGG | + | chr1_2:52727849-52727868 | Msa0076570:CDS | 50.0% | |
| TCTGGACAACTGGCATTGCT+AGG | - | chr1_2:52728081-52728100 | None:intergenic | 50.0% | |
| ! | AAGAGTGTGTCACGGTTTGG+TGG | - | chr1_2:52726587-52726606 | None:intergenic | 50.0% |
| ! | GGAAAGAGTGTGTCACGGTT+TGG | - | chr1_2:52726590-52726609 | None:intergenic | 50.0% |
| !! | GCTGAGAATGCGAGTTTTGG+TGG | - | chr1_2:52726793-52726812 | None:intergenic | 50.0% |
| !! | GAGATGGATTAAAGCAGCGC+CGG | - | chr1_2:52726847-52726866 | None:intergenic | 50.0% |
| GACGGATCTGATCTTCGAGA+TGG | - | chr1_2:52726863-52726882 | None:intergenic | 50.0% | |
| AAATCAACGACGTGAGCGTG+AGG | - | chr1_2:52726900-52726919 | None:intergenic | 50.0% | |
| TTCGACATTGTCGCTGGTAC+CGG | + | chr1_2:52726921-52726940 | Msa0076570:CDS | 50.0% | |
| TTGAAGAGAATCTCCGGCAC+CGG | - | chr1_2:52727088-52727107 | None:intergenic | 50.0% | |
| CGAATGGAGCTGAACTCTTG+AGG | - | chr1_2:52727214-52727233 | None:intergenic | 50.0% | |
| ! | TTTTTCACGAGCCGACGCAA+CGG | + | chr1_2:52727235-52727254 | Msa0076570:CDS | 50.0% |
| ATGGTTAGGTGTAGCTGACG+TGG | - | chr1_2:52727303-52727322 | None:intergenic | 50.0% | |
| GTGAAGAACATGCGTGACTG+CGG | - | chr1_2:52727414-52727433 | None:intergenic | 50.0% | |
| TTGGAGTCGTTACCGTTTGG+AGG | + | chr1_2:52727842-52727861 | Msa0076570:CDS | 50.0% | |
| TGGAGTCGTTACCGTTTGGA+GGG | + | chr1_2:52727843-52727862 | Msa0076570:CDS | 50.0% | |
| CGTTACCGTTTGGAGGGAAA+CGG | + | chr1_2:52727849-52727868 | Msa0076570:CDS | 50.0% | |
| TCTGGACAACTGGCATTGCT+AGG | - | chr1_2:52728081-52728100 | None:intergenic | 50.0% | |
| !! | TGTCACGGTTTGGTGGTGAG+AGG | - | chr1_2:52726580-52726599 | None:intergenic | 55.0% |
| !! | CGCATTCTCAGCATTGACGG+CGG | + | chr1_2:52726801-52726820 | Msa0076570:CDS | 55.0% |
| !! | ATTCTCAGCATTGACGGCGG+AGG | + | chr1_2:52726804-52726823 | Msa0076570:CDS | 55.0% |
| GGAACAACCGCCATTGTAGC+CGG | + | chr1_2:52726825-52726844 | Msa0076570:CDS | 55.0% | |
| !! | TAAAGCAGCGCCGGCTACAA+TGG | - | chr1_2:52726838-52726857 | None:intergenic | 55.0% |
| GAGGATCGGAGGTTTGGAGA+CGG | - | chr1_2:52726881-52726900 | None:intergenic | 55.0% | |
| AACGACGTGAGCGTGAGGAT+CGG | - | chr1_2:52726895-52726914 | None:intergenic | 55.0% | |
| !! | ATTGTCGCTGGTACCGGCAT+TGG | + | chr1_2:52726927-52726946 | Msa0076570:CDS | 55.0% |
| AGCAAGGATAGCGCCAATGC+CGG | - | chr1_2:52726943-52726962 | None:intergenic | 55.0% | |
| CTGCGGTGATCATTGCAGCA+AGG | - | chr1_2:52726959-52726978 | None:intergenic | 55.0% | |
| ATCACCGCAGCCGATGCATT+CGG | + | chr1_2:52726969-52726988 | Msa0076570:CDS | 55.0% | |
| !! | TCTACCGAATGCATCGGCTG+CGG | - | chr1_2:52726976-52726995 | None:intergenic | 55.0% |
| ! | CAACCGGAGTATTTCGTCGC+CGG | + | chr1_2:52727066-52727085 | Msa0076570:CDS | 55.0% |
| GCTAGGAGATTCCGTTGCGT+CGG | - | chr1_2:52727249-52727268 | None:intergenic | 55.0% | |
| GACTAAACCACCGTCTACGG+CGG | - | chr1_2:52727372-52727391 | None:intergenic | 55.0% | |
| AAGAACATGCGTGACTGCGG+CGG | - | chr1_2:52727411-52727430 | None:intergenic | 55.0% | |
| ! | TTTTCCAACGGTGAACGGCG+TGG | + | chr1_2:52727445-52727464 | Msa0076570:CDS | 55.0% |
| ! | GAACGGCGTGGAGGATCTTT+TGG | + | chr1_2:52727457-52727476 | Msa0076570:CDS | 55.0% |
| ! | TTAACGGCGTTGAGCACGTG+CGG | - | chr1_2:52727535-52727554 | None:intergenic | 55.0% |
| CACGTGCTCAACGCCGTTAA+TGG | + | chr1_2:52727535-52727554 | Msa0076570:CDS | 55.0% | |
| GGGTTGGAGTCGTTACCGTT+TGG | + | chr1_2:52727839-52727858 | Msa0076570:CDS | 55.0% | |
| ! | CAAGGACTGAACGGTGGACT+TGG | - | chr1_2:52727941-52727960 | None:intergenic | 55.0% |
| TCCACCGTTCAGTCCTTGCA+AGG | + | chr1_2:52727943-52727962 | Msa0076570:CDS | 55.0% | |
| TCCTTGCAAGGACTGAACGG+TGG | - | chr1_2:52727947-52727966 | None:intergenic | 55.0% | |
| !! | TGTCACGGTTTGGTGGTGAG+AGG | - | chr1_2:52726580-52726599 | None:intergenic | 55.0% |
| !! | CGCATTCTCAGCATTGACGG+CGG | + | chr1_2:52726801-52726820 | Msa0076570:CDS | 55.0% |
| !! | ATTCTCAGCATTGACGGCGG+AGG | + | chr1_2:52726804-52726823 | Msa0076570:CDS | 55.0% |
| GGAACAACCGCCATTGTAGC+CGG | + | chr1_2:52726825-52726844 | Msa0076570:CDS | 55.0% | |
| !! | TAAAGCAGCGCCGGCTACAA+TGG | - | chr1_2:52726838-52726857 | None:intergenic | 55.0% |
| GAGGATCGGAGGTTTGGAGA+CGG | - | chr1_2:52726881-52726900 | None:intergenic | 55.0% | |
| AACGACGTGAGCGTGAGGAT+CGG | - | chr1_2:52726895-52726914 | None:intergenic | 55.0% | |
| !! | ATTGTCGCTGGTACCGGCAT+TGG | + | chr1_2:52726927-52726946 | Msa0076570:CDS | 55.0% |
| AGCAAGGATAGCGCCAATGC+CGG | - | chr1_2:52726943-52726962 | None:intergenic | 55.0% | |
| CTGCGGTGATCATTGCAGCA+AGG | - | chr1_2:52726959-52726978 | None:intergenic | 55.0% | |
| ATCACCGCAGCCGATGCATT+CGG | + | chr1_2:52726969-52726988 | Msa0076570:CDS | 55.0% | |
| !! | TCTACCGAATGCATCGGCTG+CGG | - | chr1_2:52726976-52726995 | None:intergenic | 55.0% |
| ! | CAACCGGAGTATTTCGTCGC+CGG | + | chr1_2:52727066-52727085 | Msa0076570:CDS | 55.0% |
| GCTAGGAGATTCCGTTGCGT+CGG | - | chr1_2:52727249-52727268 | None:intergenic | 55.0% | |
| GACTAAACCACCGTCTACGG+CGG | - | chr1_2:52727372-52727391 | None:intergenic | 55.0% | |
| AAGAACATGCGTGACTGCGG+CGG | - | chr1_2:52727411-52727430 | None:intergenic | 55.0% | |
| ! | TTTTCCAACGGTGAACGGCG+TGG | + | chr1_2:52727445-52727464 | Msa0076570:CDS | 55.0% |
| ! | GAACGGCGTGGAGGATCTTT+TGG | + | chr1_2:52727457-52727476 | Msa0076570:CDS | 55.0% |
| ! | TTAACGGCGTTGAGCACGTG+CGG | - | chr1_2:52727535-52727554 | None:intergenic | 55.0% |
| CACGTGCTCAACGCCGTTAA+TGG | + | chr1_2:52727535-52727554 | Msa0076570:CDS | 55.0% | |
| GGGTTGGAGTCGTTACCGTT+TGG | + | chr1_2:52727839-52727858 | Msa0076570:CDS | 55.0% | |
| ! | CAAGGACTGAACGGTGGACT+TGG | - | chr1_2:52727941-52727960 | None:intergenic | 55.0% |
| TCCACCGTTCAGTCCTTGCA+AGG | + | chr1_2:52727943-52727962 | Msa0076570:CDS | 55.0% | |
| TCCTTGCAAGGACTGAACGG+TGG | - | chr1_2:52727947-52727966 | None:intergenic | 55.0% | |
| GAGCGTGAGGATCGGAGGTT+TGG | - | chr1_2:52726887-52726906 | None:intergenic | 60.0% | |
| ! | GCACCGGCGACGAAATACTC+CGG | - | chr1_2:52727072-52727091 | None:intergenic | 60.0% |
| GAGTATTTCGTCGCCGGTGC+CGG | + | chr1_2:52727072-52727091 | Msa0076570:CDS | 60.0% | |
| TAGGTGTAGCTGACGTGGCG+CGG | - | chr1_2:52727298-52727317 | None:intergenic | 60.0% | |
| ACCTCTTGCTCCGCCGTAGA+CGG | + | chr1_2:52727359-52727378 | Msa0076570:CDS | 60.0% | |
| GAGCGTGAGGATCGGAGGTT+TGG | - | chr1_2:52726887-52726906 | None:intergenic | 60.0% | |
| ! | GCACCGGCGACGAAATACTC+CGG | - | chr1_2:52727072-52727091 | None:intergenic | 60.0% |
| GAGTATTTCGTCGCCGGTGC+CGG | + | chr1_2:52727072-52727091 | Msa0076570:CDS | 60.0% | |
| TAGGTGTAGCTGACGTGGCG+CGG | - | chr1_2:52727298-52727317 | None:intergenic | 60.0% | |
| ACCTCTTGCTCCGCCGTAGA+CGG | + | chr1_2:52727359-52727378 | Msa0076570:CDS | 60.0% | |
| !! | AGCAGCGCCGGCTACAATGG+CGG | - | chr1_2:52726835-52726854 | None:intergenic | 65.0% |
| GACGTGAGCGTGAGGATCGG+AGG | - | chr1_2:52726892-52726911 | None:intergenic | 65.0% | |
| ACCGTCTACGGCGGAGCAAG+AGG | - | chr1_2:52727363-52727382 | None:intergenic | 65.0% | |
| TCTTGCTCCGCCGTAGACGG+TGG | + | chr1_2:52727362-52727381 | Msa0076570:CDS | 65.0% | |
| AACATGCGTGACTGCGGCGG+CGG | - | chr1_2:52727408-52727427 | None:intergenic | 65.0% | |
| TCCAACGGTGAACGGCGTGG+AGG | + | chr1_2:52727448-52727467 | Msa0076570:CDS | 65.0% | |
| TCCTCCACGCCGTTCACCGT+TGG | - | chr1_2:52727452-52727471 | None:intergenic | 65.0% | |
| !! | AGCAGCGCCGGCTACAATGG+CGG | - | chr1_2:52726835-52726854 | None:intergenic | 65.0% |
| GACGTGAGCGTGAGGATCGG+AGG | - | chr1_2:52726892-52726911 | None:intergenic | 65.0% | |
| ACCGTCTACGGCGGAGCAAG+AGG | - | chr1_2:52727363-52727382 | None:intergenic | 65.0% | |
| TCTTGCTCCGCCGTAGACGG+TGG | + | chr1_2:52727362-52727381 | Msa0076570:CDS | 65.0% | |
| AACATGCGTGACTGCGGCGG+CGG | - | chr1_2:52727408-52727427 | None:intergenic | 65.0% | |
| TCCAACGGTGAACGGCGTGG+AGG | + | chr1_2:52727448-52727467 | Msa0076570:CDS | 65.0% | |
| TCCTCCACGCCGTTCACCGT+TGG | - | chr1_2:52727452-52727471 | None:intergenic | 65.0% | |
| TGCGTGACTGCGGCGGCGGT+AGG | - | chr1_2:52727404-52727423 | None:intergenic | 75.0% | |
| TGCGTGACTGCGGCGGCGGT+AGG | - | chr1_2:52727404-52727423 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52726467 | 52728220 | 52726467 | ID=Msa0076570;Name=Msa0076570 |
| chr1_2 | mRNA | 52726467 | 52728220 | 52726467 | ID=Msa0076570-mRNA-1;Parent=Msa0076570;Name=Msa0076570-mRNA-1;_AED=0.04;_eAED=0.04;_QI=244|1|1|1|1|1|2|220|380 |
| chr1_2 | exon | 52726467 | 52727649 | 52726467 | ID=Msa0076570-mRNA-1:exon:16250;Parent=Msa0076570-mRNA-1 |
| chr1_2 | exon | 52727797 | 52728220 | 52727797 | ID=Msa0076570-mRNA-1:exon:16251;Parent=Msa0076570-mRNA-1 |
| chr1_2 | five_prime_UTR | 52726467 | 52726710 | 52726467 | ID=Msa0076570-mRNA-1:five_prime_utr;Parent=Msa0076570-mRNA-1 |
| chr1_2 | CDS | 52726711 | 52727649 | 52726711 | ID=Msa0076570-mRNA-1:cds;Parent=Msa0076570-mRNA-1 |
| chr1_2 | CDS | 52727797 | 52728000 | 52727797 | ID=Msa0076570-mRNA-1:cds;Parent=Msa0076570-mRNA-1 |
| chr1_2 | three_prime_UTR | 52728001 | 52728220 | 52728001 | ID=Msa0076570-mRNA-1:three_prime_utr;Parent=Msa0076570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
