Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169160 | XP_003590692.1 | 97.484 | 318 | 8 | 0 | 1 | 318 | 3 | 320 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169160 | sp|Q39089|PAC_ARATH | 67.290 | 321 | 94 | 5 | 1 | 318 | 1 | 313 | 7.27e-116 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169160 | G7I2K5 | 97.484 | 318 | 8 | 0 | 1 | 318 | 3 | 320 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082470 | Msa0169160 | 0.968378 | 1.362930e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169160 | MtrunA17_Chr1g0185851 | 97.484 | 318 | 8 | 0 | 1 | 318 | 3 | 320 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169160 | AT2G48120.1 | 67.290 | 321 | 94 | 5 | 1 | 318 | 1 | 313 | 7.39e-117 | 340 |
| Msa0169160 | AT2G48120.2 | 65.421 | 321 | 94 | 6 | 1 | 318 | 1 | 307 | 3.64e-109 | 320 |
Find 87 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGTAGGCATGACAATTT+AGG | 0.217139 | 1_4:-52286815 | Msa0169160:three_prime_UTR |
| AGAGAGAGAGGTGGAGGTTA+GGG | 0.267578 | 1_4:+52294646 | None:intergenic |
| AAGAGAGAGAGGTGGAGGTT+AGG | 0.281785 | 1_4:+52294645 | None:intergenic |
| TTTAAGGAGATGTGTCAATA+AGG | 0.357043 | 1_4:-52294463 | Msa0169160:CDS |
| TTCACTCACTTATTTCTTTG+TGG | 0.358823 | 1_4:-52294684 | Msa0169160:five_prime_UTR |
| AGTAGAAGCTCTACTAGATT+TGG | 0.362994 | 1_4:-52287005 | Msa0169160:CDS |
| AAGGAAGAGGTGCTTCTAGA+AGG | 0.394925 | 1_4:-52294438 | Msa0169160:CDS |
| CAACAAGGGATGAAGAATAA+AGG | 0.401851 | 1_4:+52294615 | None:intergenic |
| ATATCAAATGACTCAAATCC+AGG | 0.411113 | 1_4:+52287615 | None:intergenic |
| TCACTCACTTATTTCTTTGT+GGG | 0.421735 | 1_4:-52294683 | Msa0169160:five_prime_UTR |
| AACAAGGGATGAAGAATAAA+GGG | 0.424652 | 1_4:+52294616 | None:intergenic |
| AAAATACAGGACCATCCATT+TGG | 0.426100 | 1_4:+52286697 | None:intergenic |
| GCAAGACGTTCGGTCGGAAC+AGG | 0.428212 | 1_4:-52287113 | Msa0169160:CDS |
| AATGTAGGCATGACAATTTA+GGG | 0.429658 | 1_4:-52286814 | Msa0169160:three_prime_UTR |
| CACCTATTTACAGGATGAAA+AGG | 0.437281 | 1_4:-52288332 | Msa0169160:intron |
| ATACAACCCGTGAAGCTACT+TGG | 0.438626 | 1_4:+52286863 | None:intergenic |
| TGCTATATGGATCCTCCCTT+GGG | 0.442722 | 1_4:+52287649 | None:intergenic |
| AAAGGATGCTATAAGAAGTC+TGG | 0.442751 | 1_4:-52288314 | Msa0169160:CDS |
| GAGATGTGTCAATAAGGAAA+AGG | 0.455841 | 1_4:-52294457 | Msa0169160:CDS |
| TGCTAATATATTAAAACAGC+AGG | 0.458418 | 1_4:-52287050 | Msa0169160:CDS |
| AGTGAGACAAATCAAGCAAA+AGG | 0.462570 | 1_4:-52294713 | Msa0169160:five_prime_UTR |
| ATTTGGCCATTAGTTTGAAC+TGG | 0.463487 | 1_4:-52286988 | Msa0169160:CDS |
| TAGCTACCAGTTCAAACTAA+TGG | 0.463566 | 1_4:+52286982 | None:intergenic |
| AAAGAAAGAGAGAGAGGTGG+AGG | 0.464054 | 1_4:+52294640 | None:intergenic |
| ATGCTATATGGATCCTCCCT+TGG | 0.473549 | 1_4:+52287648 | None:intergenic |
| TTAGGGTGATGAGAATCTCT+TGG | 0.474941 | 1_4:-52286797 | Msa0169160:three_prime_UTR |
| ACATCTACCGTCTATCCAAA+TGG | 0.476502 | 1_4:-52286712 | Msa0169160:three_prime_UTR |
| ATGAATTGCTGCAAGACGTT+CGG | 0.477719 | 1_4:-52287123 | Msa0169160:CDS |
| TTGCAGTCCAAGTAGCTTCA+CGG | 0.488315 | 1_4:-52286870 | Msa0169160:three_prime_UTR |
| TGCAGTCCAAGTAGCTTCAC+GGG | 0.488385 | 1_4:-52286869 | Msa0169160:three_prime_UTR |
| TAGGGTGATGAGAATCTCTT+GGG | 0.489366 | 1_4:-52286796 | Msa0169160:three_prime_UTR |
| CACTCACTTATTTCTTTGTG+GGG | 0.493138 | 1_4:-52294682 | Msa0169160:five_prime_UTR |
| CATCACGCCGAGCAAGATCA+AGG | 0.493288 | 1_4:+52289950 | None:intergenic |
| GAGAGGTGGAGGTTAGGGAG+AGG | 0.495213 | 1_4:+52294651 | None:intergenic |
| GCGTCTTCGATGCAACTCCT+TGG | 0.495907 | 1_4:+52290447 | None:intergenic |
| TCATTGAGTAATCTCATCGC+AGG | 0.500918 | 1_4:+52287747 | None:intergenic |
| AGCCGCTGAAGAAGTAGAAG+AGG | 0.505834 | 1_4:-52290302 | Msa0169160:intron |
| ATTGAAGAGTATCGTGAAGT+TGG | 0.507618 | 1_4:-52290394 | Msa0169160:CDS |
| AAGGGGAAAGAAAGAGAGAG+AGG | 0.513435 | 1_4:+52294634 | None:intergenic |
| CTTGTTTGTATCAGCATCAC+GGG | 0.514765 | 1_4:-52287213 | Msa0169160:intron |
| TAAGATAGGAATGGCAAGCC+CGG | 0.518072 | 1_4:-52290483 | Msa0169160:intron |
| AATCTAGTAGAGCTTCTACT+TGG | 0.521112 | 1_4:+52287008 | None:intergenic |
| GTAAAATGACACACAAATGT+AGG | 0.536932 | 1_4:-52286829 | Msa0169160:three_prime_UTR |
| GTCTGGATCTGTTATACAGA+AGG | 0.537384 | 1_4:-52288297 | Msa0169160:CDS |
| GGGAAAGAAAGAGAGAGAGG+TGG | 0.537915 | 1_4:+52294637 | None:intergenic |
| GTGAGACAAATCAAGCAAAA+GGG | 0.544176 | 1_4:-52294712 | Msa0169160:five_prime_UTR |
| TGAAGTTGGCATGCGGCTGA+AGG | 0.547056 | 1_4:-52290380 | Msa0169160:CDS |
| AGGAAGAGGTGCTTCTAGAA+GGG | 0.551744 | 1_4:-52294437 | Msa0169160:CDS |
| ATCAAATGACTCAAATCCAG+GGG | 0.552629 | 1_4:+52287617 | None:intergenic |
| GAGAAGGTGTTGTGGCAACA+AGG | 0.557255 | 1_4:+52294600 | None:intergenic |
| TATTCAACACTATAAACTGT+AGG | 0.557966 | 1_4:+52286913 | None:intergenic |
| ATCAAGATATATTATGACAC+AGG | 0.564736 | 1_4:+52294749 | None:intergenic |
| TATCAAATGACTCAAATCCA+GGG | 0.569402 | 1_4:+52287616 | None:intergenic |
| TGTCAATAAGGAAAAGGAAG+AGG | 0.574293 | 1_4:-52294451 | Msa0169160:CDS |
| AAGACGCAGAGAGGAAGAAG+AGG | 0.575839 | 1_4:-52290431 | Msa0169160:CDS |
| ATTGAGGAAGCTGCTGAGAG+AGG | 0.576137 | 1_4:-52290012 | Msa0169160:CDS |
| CACAGCAGATATATTCGTAC+CGG | 0.578542 | 1_4:+52294786 | None:intergenic |
| TCTTGTTTGTATCAGCATCA+CGG | 0.580699 | 1_4:-52287214 | Msa0169160:intron |
| CACCTCTTCTACTTCTTCAG+CGG | 0.584322 | 1_4:+52290300 | None:intergenic |
| CTACGGAAACTAACCTGGGG+TGG | 0.585661 | 1_4:+52294544 | None:intergenic |
| GGAATCGCCTTGATCTTGCT+CGG | 0.587486 | 1_4:-52289957 | Msa0169160:CDS |
| CATTGAGTAATCTCATCGCA+GGG | 0.591092 | 1_4:+52287748 | None:intergenic |
| AAGAAGATGTTAGAAAAGCA+AGG | 0.592506 | 1_4:-52290348 | Msa0169160:CDS |
| TACAAGTGCACATCCACCCC+AGG | 0.593995 | 1_4:-52294557 | Msa0169160:intron |
| CTACCGTCTATCCAAATGGA+TGG | 0.604825 | 1_4:-52286708 | Msa0169160:three_prime_UTR |
| GGGATATGGAGAAGGTGTTG+TGG | 0.606948 | 1_4:+52294592 | None:intergenic |
| ACATCATCATAGTAGTGAGA+AGG | 0.607348 | 1_4:+52294411 | None:intergenic |
| GGACCATCCATTTGGATAGA+CGG | 0.609110 | 1_4:+52286705 | None:intergenic |
| TCTGGATCTGTTATACAGAA+GGG | 0.611300 | 1_4:-52288296 | Msa0169160:CDS |
| GACTGAGATCTTGAAACGAG+AGG | 0.614776 | 1_4:-52287775 | Msa0169160:CDS |
| ACTTCAAGTGATGGTCGCAA+TGG | 0.623785 | 1_4:+52287190 | None:intergenic |
| TCTGTTATACAGAAGGGTTG+AGG | 0.625946 | 1_4:-52288290 | Msa0169160:intron |
| GATTTGAGTTAATTGTACAG+TGG | 0.628519 | 1_4:-52286631 | Msa0169160:three_prime_UTR |
| TCATGATTGATACATTCCCA+AGG | 0.636948 | 1_4:-52287665 | Msa0169160:CDS |
| TTATCATCGACTTCAAGTGA+TGG | 0.637619 | 1_4:+52287181 | None:intergenic |
| ATGACACAGGGTTTAAGACA+CGG | 0.661579 | 1_4:+52294762 | None:intergenic |
| CATGATTGATACATTCCCAA+GGG | 0.662825 | 1_4:-52287664 | Msa0169160:CDS |
| TCAAGATATATTATGACACA+GGG | 0.666781 | 1_4:+52294750 | None:intergenic |
| GTTGCATCGAAGACGCAGAG+AGG | 0.670357 | 1_4:-52290440 | Msa0169160:CDS |
| ATTGCTGCAAGACGTTCGGT+CGG | 0.675176 | 1_4:-52287119 | Msa0169160:CDS |
| AGAAGGTGTTGTGGCAACAA+GGG | 0.680247 | 1_4:+52294601 | None:intergenic |
| GATTGATACATTCCCAAGGG+AGG | 0.682890 | 1_4:-52287661 | Msa0169160:CDS |
| ACAAGGGATGAAGAATAAAG+GGG | 0.691512 | 1_4:+52294617 | None:intergenic |
| CCGGCAACGTGAAAAGACCA+AGG | 0.699550 | 1_4:-52290464 | Msa0169160:CDS |
| AGTATCGTGAAGTTGGCATG+CGG | 0.712651 | 1_4:-52290387 | Msa0169160:CDS |
| ATTGAGTAATCTCATCGCAG+GGG | 0.726511 | 1_4:+52287749 | None:intergenic |
| TCAAATGACTCAAATCCAGG+GGG | 0.733559 | 1_4:+52287618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTAAAATTTTATT+AGG | + | chr1_4:52290509-52290528 | None:intergenic | 0.0% |
| !!! | TAAATTGATTATTTTGATTT+TGG | - | chr1_4:52286940-52286959 | Msa0169160:three_prime_UTR | 10.0% |
| !!! | AAATGTAATTATATTTTGTA+GGG | + | chr1_4:52287434-52287453 | None:intergenic | 10.0% |
| !!! | AAAATGTAATTATATTTTGT+AGG | + | chr1_4:52287435-52287454 | None:intergenic | 10.0% |
| !! | GTATATTATTGTATATAAAA+TGG | + | chr1_4:52292567-52292586 | None:intergenic | 10.0% |
| !! | AATAGAGTAAAAATTGTTTA+TGG | + | chr1_4:52287173-52287192 | None:intergenic | 15.0% |
| !! | AAAAAAAACACGATTAAATA+GGG | + | chr1_4:52287338-52287357 | None:intergenic | 15.0% |
| !! | AAAAAAAAACACGATTAAAT+AGG | + | chr1_4:52287339-52287358 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr1_4:52287403-52287422 | None:intergenic | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr1_4:52287404-52287423 | None:intergenic | 15.0% |
| !!! | AATGTGTGATTTTATTTTAT+AGG | - | chr1_4:52287590-52287609 | Msa0169160:intron | 15.0% |
| !!! | ATGTGTGATTTTATTTTATA+GGG | - | chr1_4:52287591-52287610 | Msa0169160:intron | 15.0% |
| !!! | TAAATAAGTTGTTTTGAAAA+AGG | + | chr1_4:52288291-52288310 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | + | chr1_4:52289452-52289471 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | + | chr1_4:52289452-52289471 | None:intergenic | 15.0% |
| !! | TCAAAATAACTTATTCAAAA+AGG | - | chr1_4:52288340-52288359 | Msa0169160:intron | 15.0% |
| !!! | TGAAAAATTTGTTTTGAAAA+AGG | + | chr1_4:52288937-52288956 | None:intergenic | 15.0% |
| !!! | AAAAATTTGTTTTGAAAAAG+GGG | + | chr1_4:52288935-52288954 | None:intergenic | 15.0% |
| !!! | GAAAAATTTGTTTTGAAAAA+GGG | + | chr1_4:52288936-52288955 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTGTTTTGAAAA+AGG | + | chr1_4:52288937-52288956 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTGTTTTGAAAA+AGG | + | chr1_4:52288937-52288956 | None:intergenic | 15.0% |
| !! | TTTACATAAAACAACTTATT+AGG | + | chr1_4:52289723-52289742 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | - | chr1_4:52289452-52289471 | Msa0169160:intron | 15.0% |
| !! | TTTATGAAAAACAACTTATT+AGG | + | chr1_4:52290387-52290406 | None:intergenic | 15.0% |
| !! | AATATTTATCATAACTAATC+AGG | + | chr1_4:52291253-52291272 | None:intergenic | 15.0% |
| !!! | AAAAAGCATAAATAAACAAA+AGG | + | chr1_4:52291319-52291338 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTTTAGGTAAT+TGG | - | chr1_4:52291524-52291543 | Msa0169160:intron | 15.0% |
| !! | ATTATTTGTCAAAAAAAAAG+TGG | + | chr1_4:52292742-52292761 | None:intergenic | 15.0% |
| !! | GTCTATCATAATAAATTATT+TGG | + | chr1_4:52292895-52292914 | None:intergenic | 15.0% |
| !! | TATGATTATTATAATCTGAA+AGG | - | chr1_4:52292973-52292992 | Msa0169160:intron | 15.0% |
| !! | ATGATTATTATAATCTGAAA+GGG | - | chr1_4:52292974-52292993 | Msa0169160:intron | 15.0% |
| !!! | TAATATTTTTTCCCTATAAT+AGG | + | chr1_4:52293297-52293316 | None:intergenic | 15.0% |
| !! | ATCCAATGTATTTAAAAAAA+TGG | + | chr1_4:52293453-52293472 | None:intergenic | 15.0% |
| !!! | TTTTACCAAATCTATAATAA+CGG | - | chr1_4:52293853-52293872 | Msa0169160:intron | 15.0% |
| !! | ATTTAACCAACTTATATAAA+TGG | + | chr1_4:52294027-52294046 | None:intergenic | 15.0% |
| !!! | ATAAGTTTGATTTAAAAGTA+AGG | - | chr1_4:52294115-52294134 | Msa0169160:intron | 15.0% |
| !!! | GTATTTTGATTTACATATAT+CGG | - | chr1_4:52294488-52294507 | Msa0169160:intron | 15.0% |
| !!! | TATTTTAGCACAAATTTTAC+CGG | - | chr1_4:52286628-52286647 | Msa0169160:three_prime_UTR | 20.0% |
| !! | GCTTAATTAAGTTTATATTC+TGG | - | chr1_4:52287105-52287124 | Msa0169160:CDS | 20.0% |
| !!! | ATTTTTACTCTATTTCCATT+AGG | - | chr1_4:52287179-52287198 | Msa0169160:CDS | 20.0% |
| !!! | AAAAATTCTGTCAACATTTT+TGG | + | chr1_4:52287495-52287514 | None:intergenic | 20.0% |
| !!! | TGTTGACAGAATTTTTTTAT+AGG | - | chr1_4:52287499-52287518 | Msa0169160:intron | 20.0% |
| !!! | GTTGACAGAATTTTTTTATA+GGG | - | chr1_4:52287500-52287519 | Msa0169160:intron | 20.0% |
| !! | ACGAAATTCTGAATATTTAT+AGG | - | chr1_4:52287621-52287640 | Msa0169160:CDS | 20.0% |
| !! | CGAAATTCTGAATATTTATA+GGG | - | chr1_4:52287622-52287641 | Msa0169160:CDS | 20.0% |
| !!! | AAAACCACTTTAAAAAAAAC+TGG | - | chr1_4:52288083-52288102 | Msa0169160:intron | 20.0% |
| !!! | TAAACCAGTTTTTTTTAAAG+TGG | + | chr1_4:52288090-52288109 | None:intergenic | 20.0% |
| !! | AATAAACAATGACTAAAATC+CGG | + | chr1_4:52288261-52288280 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTGTTTATT+AGG | - | chr1_4:52288261-52288280 | Msa0169160:intron | 20.0% |
| !! | TTTACGTAAAACAACTTATT+AGG | - | chr1_4:52288307-52288326 | Msa0169160:CDS | 20.0% |
| !! | AACAACTTATTTACGTAAAA+CGG | - | chr1_4:52288298-52288317 | Msa0169160:CDS | 20.0% |
| !! | TTTATGCAAAATAGCTTATT+AGG | + | chr1_4:52289603-52289622 | None:intergenic | 20.0% |
| !! | AACAACTTATTTACGTAAAA+CGG | + | chr1_4:52288298-52288317 | None:intergenic | 20.0% |
| !! | TTTATGCAAAATAGCTTATT+AGG | + | chr1_4:52289603-52289622 | None:intergenic | 20.0% |
| !! | TTTACACAAAATAGCTTATT+AGG | + | chr1_4:52290267-52290286 | None:intergenic | 20.0% |
| !! | TTTACACAAAATAGCTTATT+AGG | + | chr1_4:52290267-52290286 | None:intergenic | 20.0% |
| !!! | AATAAGCTGTTTTTGAAAAA+GGG | - | chr1_4:52290359-52290378 | Msa0169160:CDS | 20.0% |
| !!! | GAAAGTGTACTAAAAAAATA+TGG | - | chr1_4:52290579-52290598 | Msa0169160:intron | 20.0% |
| !! | ATGGTTCAAATATATTAAAC+TGG | - | chr1_4:52290598-52290617 | Msa0169160:intron | 20.0% |
| !! | ATTAAACCTTCAAACAAAAT+TGG | + | chr1_4:52290905-52290924 | None:intergenic | 20.0% |
| !!! | TTTTGTTTGAAGGTTTAATT+TGG | - | chr1_4:52290906-52290925 | Msa0169160:intron | 20.0% |
| !! | TTGAAAATAAAACTTGATCA+TGG | + | chr1_4:52291213-52291232 | None:intergenic | 20.0% |
| !!! | TTTGGTGTTTGAAATATTTT+AGG | - | chr1_4:52291517-52291536 | Msa0169160:intron | 20.0% |
| !! | TTGTTCACAAAATCAAAAAT+TGG | + | chr1_4:52291687-52291706 | None:intergenic | 20.0% |
| !!! | ATAGTTGACTTTTATTTTTG+TGG | - | chr1_4:52292356-52292375 | Msa0169160:intron | 20.0% |
| !!! | TTCTGAAAATACTACAAATT+TGG | - | chr1_4:52292592-52292611 | Msa0169160:intron | 20.0% |
| !! | GATTAATGTATAAAACAAGA+TGG | + | chr1_4:52293082-52293101 | None:intergenic | 20.0% |
| !!! | TTTTAGTCATAAACAAAAAG+GGG | + | chr1_4:52293182-52293201 | None:intergenic | 20.0% |
| !!! | GTTTTAGTCATAAACAAAAA+GGG | + | chr1_4:52293183-52293202 | None:intergenic | 20.0% |
| !!! | AAATCAACAAAGAGTATTTA+CGG | + | chr1_4:52293396-52293415 | None:intergenic | 20.0% |
| !!! | CTCCATTTTTTTAAATACAT+TGG | - | chr1_4:52293448-52293467 | Msa0169160:intron | 20.0% |
| !! | TTAGTTAACAATTGATCAAT+TGG | + | chr1_4:52293975-52293994 | None:intergenic | 20.0% |
| !! | AATCAACCATTTATATAAGT+TGG | - | chr1_4:52294018-52294037 | Msa0169160:intron | 20.0% |
| !! | ATTAAGTGATTAAACTTGAT+TGG | - | chr1_4:52294078-52294097 | Msa0169160:intron | 20.0% |
| !!! | CCTACAATTTTTAGTTTAAA+TGG | + | chr1_4:52294152-52294171 | None:intergenic | 20.0% |
| !! | CCATTTAAACTAAAAATTGT+AGG | - | chr1_4:52294149-52294168 | Msa0169160:intron | 20.0% |
| !!! | ATAATGTGTTTTAAAGGTAA+AGG | - | chr1_4:52294662-52294681 | Msa0169160:CDS | 20.0% |
| ! | TCAAGATATATTATGACACA+GGG | + | chr1_4:52286686-52286705 | None:intergenic | 25.0% |
| ! | ATCAAGATATATTATGACAC+AGG | + | chr1_4:52286687-52286706 | None:intergenic | 25.0% |
| ! | ATTGAAATATGTAGAAGCTA+CGG | + | chr1_4:52286909-52286928 | None:intergenic | 25.0% |
| ! | GAAAAACAGAAATGATAAGA+AGG | + | chr1_4:52287059-52287078 | None:intergenic | 25.0% |
| !!! | GCTTTTTTAAGTTATCCTAA+TGG | + | chr1_4:52287197-52287216 | None:intergenic | 25.0% |
| ! | TAATTAACCCTAAAACAGAT+GGG | + | chr1_4:52287370-52287389 | None:intergenic | 25.0% |
| ! | TTAATTAACCCTAAAACAGA+TGG | + | chr1_4:52287371-52287390 | None:intergenic | 25.0% |
| !! | ACATTATCCTTAAGCATTTT+AGG | - | chr1_4:52287467-52287486 | Msa0169160:intron | 25.0% |
| !! | CATTATCCTTAAGCATTTTA+GGG | - | chr1_4:52287468-52287487 | Msa0169160:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+AGG | - | chr1_4:52287531-52287550 | Msa0169160:intron | 25.0% |
| !! | ATGCTGATGGAAAATTTTAT+AGG | - | chr1_4:52287530-52287549 | Msa0169160:intron | 25.0% |
| !! | TGCTGATGGAAAATTTTATA+GGG | - | chr1_4:52287531-52287550 | Msa0169160:intron | 25.0% |
| ! | CAAAGGGTTAATTAAGTAAT+TGG | + | chr1_4:52287649-52287668 | None:intergenic | 25.0% |
| ! | GCTAACAACAATAAAACAAA+GGG | + | chr1_4:52287665-52287684 | None:intergenic | 25.0% |
| ! | AGCTAACAACAATAAAACAA+AGG | + | chr1_4:52287666-52287685 | None:intergenic | 25.0% |
| ! | ATTGATAAGAGTTTGTAAAG+AGG | + | chr1_4:52287787-52287806 | None:intergenic | 25.0% |
| ! | TCTTTACAAACTCTTATCAA+TGG | - | chr1_4:52287786-52287805 | Msa0169160:intron | 25.0% |
| ! | CTAATATTTGTCAGCTAATT+AGG | - | chr1_4:52287918-52287937 | Msa0169160:intron | 25.0% |
| !! | TTGGTTCGAAATAAATAAAC+CGG | + | chr1_4:52288173-52288192 | None:intergenic | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | - | chr1_4:52288487-52288506 | Msa0169160:intron | 25.0% |
| ! | TTTACGTAAAACAGCTTATT+AGG | - | chr1_4:52288907-52288926 | Msa0169160:intron | 25.0% |
| ! | ATTTATGCAAAACAGCTTAT+TGG | - | chr1_4:52288366-52288385 | Msa0169160:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+GGG | - | chr1_4:52288367-52288386 | Msa0169160:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr1_4:52288367-52288386 | Msa0169160:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr1_4:52288367-52288386 | Msa0169160:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr1_4:52288367-52288386 | Msa0169160:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr1_4:52288367-52288386 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | + | chr1_4:52289422-52289441 | None:intergenic | 25.0% |
| ! | TTTACACAAAACAGCTTATT+TGG | + | chr1_4:52288487-52288506 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | + | chr1_4:52289422-52289441 | None:intergenic | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | + | chr1_4:52288487-52288506 | None:intergenic | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | + | chr1_4:52289422-52289441 | None:intergenic | 25.0% |
| ! | AACAGCTTATTTACGTAAAA+CGG | + | chr1_4:52290096-52290115 | None:intergenic | 25.0% |
| !!! | GAATAAGCTGTTTTTGAAAA+AGG | - | chr1_4:52290358-52290377 | Msa0169160:CDS | 25.0% |
| !! | AATAAGTTGTTTCGAATAAG+CGG | - | chr1_4:52290405-52290424 | Msa0169160:CDS | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | + | chr1_4:52288367-52288386 | None:intergenic | 25.0% |
| !! | ATTCAGTTCAAGTTTAAAAC+CGG | + | chr1_4:52290631-52290650 | None:intergenic | 25.0% |
| ! | CAGTTCATAAACCATTTAAA+TGG | - | chr1_4:52290670-52290689 | Msa0169160:intron | 25.0% |
| ! | AAAAAACTGCACCATTTAAA+TGG | + | chr1_4:52290684-52290703 | None:intergenic | 25.0% |
| !! | TTATGTTTTCCTTTTATGAG+TGG | - | chr1_4:52290791-52290810 | Msa0169160:intron | 25.0% |
| !!! | TAATTAACCTTCTCTAAGAT+AGG | - | chr1_4:52290936-52290955 | Msa0169160:intron | 25.0% |
| !! | ATTTTATCTGCATGACAAAT+AGG | + | chr1_4:52291184-52291203 | None:intergenic | 25.0% |
| !! | GAAAATATTTTCATTCCAGA+TGG | - | chr1_4:52291278-52291297 | Msa0169160:intron | 25.0% |
| !!! | TTAGTGATCAGTTTTTTTGT+AGG | - | chr1_4:52291340-52291359 | Msa0169160:intron | 25.0% |
| !!! | TAGTGATCAGTTTTTTTGTA+GGG | - | chr1_4:52291341-52291360 | Msa0169160:intron | 25.0% |
| ! | TACAAGAGAAAAAGATCAAT+CGG | + | chr1_4:52291397-52291416 | None:intergenic | 25.0% |
| !! | TTTTCTCTTGTAGAAAATTG+AGG | - | chr1_4:52291405-52291424 | Msa0169160:intron | 25.0% |
| ! | AATCAAAAATTGGTTAACTG+AGG | + | chr1_4:52291677-52291696 | None:intergenic | 25.0% |
| ! | CGAAAGATTCAAAATTACTA+AGG | + | chr1_4:52292203-52292222 | None:intergenic | 25.0% |
| ! | TAATTACAGCCTAAATTCAT+AGG | - | chr1_4:52292536-52292555 | Msa0169160:intron | 25.0% |
| ! | AATTACAGCCTAAATTCATA+GGG | - | chr1_4:52292537-52292556 | Msa0169160:intron | 25.0% |
| ! | CAAAATACTTTCTTCTTTGA+TGG | + | chr1_4:52292700-52292719 | None:intergenic | 25.0% |
| ! | TTTGTCAAAAAAAAAGTGGA+AGG | + | chr1_4:52292738-52292757 | None:intergenic | 25.0% |
| ! | TACATTAATCACCTATTTAC+AGG | - | chr1_4:52293092-52293111 | Msa0169160:intron | 25.0% |
| !!! | CGTTTTAGTCATAAACAAAA+AGG | + | chr1_4:52293184-52293203 | None:intergenic | 25.0% |
| !! | CAGAAACTAAAGTATTATGA+AGG | + | chr1_4:52293538-52293557 | None:intergenic | 25.0% |
| !! | CAGAAACTAAAGTATTATGA+AGG | + | chr1_4:52293538-52293557 | None:intergenic | 25.0% |
| !! | AGTTTGATTTAAAAGTAAGG+TGG | - | chr1_4:52294118-52294137 | Msa0169160:intron | 25.0% |
| !!! | TTTTGAGGATTGATTTTGTA+AGG | - | chr1_4:52294280-52294299 | Msa0169160:intron | 25.0% |
| !!! | TTTGAGGATTGATTTTGTAA+GGG | - | chr1_4:52294281-52294300 | Msa0169160:intron | 25.0% |
| ! | TGCTAATATATTAAAACAGC+AGG | - | chr1_4:52294383-52294402 | Msa0169160:intron | 25.0% |
| ! | TATTCAACACTATAAACTGT+AGG | + | chr1_4:52294523-52294542 | None:intergenic | 25.0% |
| !!! | ATTTGTGTGTCATTTTACAA+GGG | + | chr1_4:52294602-52294621 | None:intergenic | 25.0% |
| ! | AAACCAAACACTAAAAATAC+AGG | + | chr1_4:52294752-52294771 | None:intergenic | 25.0% |
| !!! | TGTATTTTTAGTGTTTGGTT+TGG | - | chr1_4:52294751-52294770 | Msa0169160:five_prime_UTR | 25.0% |
| ! | TTCACTCACTTATTTCTTTG+TGG | - | chr1_4:52286749-52286768 | Msa0169160:three_prime_UTR | 30.0% |
| ! | TCACTCACTTATTTCTTTGT+GGG | - | chr1_4:52286750-52286769 | Msa0169160:three_prime_UTR | 30.0% |
| AACAAGGGATGAAGAATAAA+GGG | + | chr1_4:52286820-52286839 | None:intergenic | 30.0% | |
| TATGAAGAAAAAGAGGGATA+TGG | + | chr1_4:52286858-52286877 | None:intergenic | 30.0% | |
| CACTTGTATGAAGAAAAAGA+GGG | + | chr1_4:52286864-52286883 | None:intergenic | 30.0% | |
| !! | TGATTTTGGTCACAGTTTTA+AGG | - | chr1_4:52286954-52286973 | Msa0169160:three_prime_UTR | 30.0% |
| TTTAAGGAGATGTGTCAATA+AGG | - | chr1_4:52286970-52286989 | Msa0169160:exon | 30.0% | |
| AACAGAAATGATAAGAAGGA+AGG | + | chr1_4:52287055-52287074 | None:intergenic | 30.0% | |
| ATGTCATAAATTGTCCTGAT+TGG | + | chr1_4:52287148-52287167 | None:intergenic | 30.0% | |
| ATAAGCGCATATCATATAAG+TGG | + | chr1_4:52287272-52287291 | None:intergenic | 30.0% | |
| ATAAGGACTAAAAATGCTGA+TGG | - | chr1_4:52287548-52287567 | Msa0169160:intron | 30.0% | |
| CTTCAAAGAACTACTAAACA+TGG | + | chr1_4:52287723-52287742 | None:intergenic | 30.0% | |
| TTGGAACTGAACTACATTAA+TGG | - | chr1_4:52288044-52288063 | Msa0169160:intron | 30.0% | |
| ! | ACTGGTTTAAAACTGTAAAC+CGG | + | chr1_4:52288203-52288222 | None:intergenic | 30.0% |
| ! | GAATAATCTGGTTCAAAAAC+TGG | + | chr1_4:52288221-52288240 | None:intergenic | 30.0% |
| AAACCAGTTCAAGAATAATC+TGG | + | chr1_4:52288233-52288252 | None:intergenic | 30.0% | |
| TTTACGTAAAACGGCTTATT+AGG | - | chr1_4:52288667-52288686 | Msa0169160:intron | 30.0% | |
| TTTACGTAAAACGGCTTAAT+AGG | + | chr1_4:52289663-52289682 | None:intergenic | 30.0% | |
| TTTACGTAAAACGGCTTATT+AGG | + | chr1_4:52288667-52288686 | None:intergenic | 30.0% | |
| !!! | CAGTTTTTTTTTGTCCAGTT+TGG | - | chr1_4:52290695-52290714 | Msa0169160:intron | 30.0% |
| GAAAATTGTCCACTCATAAA+AGG | + | chr1_4:52290803-52290822 | None:intergenic | 30.0% | |
| !! | TAAGAACTGTAAAAGCGTTA+CGG | - | chr1_4:52290838-52290857 | Msa0169160:intron | 30.0% |
| !! | GTGAAACCAATTTTGTTTGA+AGG | - | chr1_4:52290896-52290915 | Msa0169160:intron | 30.0% |
| ! | CTTTTCTAACATCTTCTTCA+GGG | + | chr1_4:52291083-52291102 | None:intergenic | 30.0% |
| AAGAAGATGTTAGAAAAGCA+AGG | - | chr1_4:52291085-52291104 | Msa0169160:intron | 30.0% | |
| !!! | ACTTACTGAACTTGTTTTGA+TGG | - | chr1_4:52291447-52291466 | Msa0169160:intron | 30.0% |
| !!! | AACTTGTTTTGATGGTCATA+TGG | - | chr1_4:52291455-52291474 | Msa0169160:intron | 30.0% |
| !!! | CGTGATGTAAGTTGTTATTT+TGG | - | chr1_4:52291499-52291518 | Msa0169160:intron | 30.0% |
| ! | TGATTTTGTGAACAACATAG+TGG | - | chr1_4:52291692-52291711 | Msa0169160:intron | 30.0% |
| AGTTTGACAAGCATGTAAAA+TGG | + | chr1_4:52291756-52291775 | None:intergenic | 30.0% | |
| !! | TAACTCAATTTTGATACCTG+AGG | + | chr1_4:52291814-52291833 | None:intergenic | 30.0% |
| TAACTCTTGACAAATTCTTG+AGG | - | chr1_4:52291862-52291881 | Msa0169160:intron | 30.0% | |
| !!! | TTTTTTTTTGGTGCAATGCT+GGG | + | chr1_4:52292030-52292049 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTGGTGCAATGC+TGG | + | chr1_4:52292031-52292050 | None:intergenic | 30.0% |
| GCATTGCACCAAAAAAAAAA+AGG | - | chr1_4:52292031-52292050 | Msa0169160:intron | 30.0% | |
| AGATGCATATATAGAGTTGA+GGG | + | chr1_4:52292098-52292117 | None:intergenic | 30.0% | |
| TCAAAATTACTAAGGAGTGA+AGG | + | chr1_4:52292195-52292214 | None:intergenic | 30.0% | |
| AACAGAACATACAGCAAAAT+AGG | + | chr1_4:52292280-52292299 | None:intergenic | 30.0% | |
| ATTACAGCCTAAATTCATAG+GGG | - | chr1_4:52292538-52292557 | Msa0169160:intron | 30.0% | |
| !!! | TTTTTTGATACTGCTGAAGT+TGG | + | chr1_4:52292653-52292672 | None:intergenic | 30.0% |
| ! | ACTCGGTGAAAATAAATAGT+TGG | + | chr1_4:52292849-52292868 | None:intergenic | 30.0% |
| !! | CTATTTATTTTCACCGAGTT+TGG | - | chr1_4:52292850-52292869 | Msa0169160:intron | 30.0% |
| ! | CCTTTTGTAACCTTCTATAT+CGG | - | chr1_4:52292944-52292963 | Msa0169160:intron | 30.0% |
| CATATCATATCCGATATAGA+AGG | + | chr1_4:52292957-52292976 | None:intergenic | 30.0% | |
| ! | ATCCTTTTCATCCTGTAAAT+AGG | + | chr1_4:52293106-52293125 | None:intergenic | 30.0% |
| TTATGACTAAAACGCTTTCT+TGG | - | chr1_4:52293190-52293209 | Msa0169160:intron | 30.0% | |
| ATGTCTTAAGAGCCTATTAT+AGG | - | chr1_4:52293282-52293301 | Msa0169160:intron | 30.0% | |
| TGTCTTAAGAGCCTATTATA+GGG | - | chr1_4:52293283-52293302 | Msa0169160:intron | 30.0% | |
| ! | TCTGTTCTGAGTTTAACTTT+CGG | - | chr1_4:52293554-52293573 | Msa0169160:intron | 30.0% |
| !!! | TTCGGTTTTGACTTTCATAT+TGG | - | chr1_4:52293572-52293591 | Msa0169160:intron | 30.0% |
| ! | TCTGTTCTGAGTTTAACTTT+CGG | - | chr1_4:52293554-52293573 | Msa0169160:intron | 30.0% |
| !! | GATCTTTTGATTATGTACGA+TGG | - | chr1_4:52293707-52293726 | Msa0169160:intron | 30.0% |
| !!! | ATGGCTTTAATTTTGATGAG+TGG | - | chr1_4:52293726-52293745 | Msa0169160:intron | 30.0% |
| TATCAAATGACTCAAATCCA+GGG | + | chr1_4:52293820-52293839 | None:intergenic | 30.0% | |
| ATATCAAATGACTCAAATCC+AGG | + | chr1_4:52293821-52293840 | None:intergenic | 30.0% | |
| GGTATCCGTTATTATAGATT+TGG | + | chr1_4:52293861-52293880 | None:intergenic | 30.0% | |
| TCAACCATAATGTCAAACTA+CGG | + | chr1_4:52293882-52293901 | None:intergenic | 30.0% | |
| !! | AGTGGATTCTAAAGTACAAT+CGG | - | chr1_4:52293902-52293921 | Msa0169160:intron | 30.0% |
| ! | TCGATGATAATACTCTTTTG+AGG | - | chr1_4:52294265-52294284 | Msa0169160:intron | 30.0% |
| !!! | TTTGTGTGTCATTTTACAAG+GGG | + | chr1_4:52294601-52294620 | None:intergenic | 30.0% |
| !!! | CATTTGTGTGTCATTTTACA+AGG | + | chr1_4:52294603-52294622 | None:intergenic | 30.0% |
| GTAAAATGACACACAAATGT+AGG | - | chr1_4:52294604-52294623 | Msa0169160:CDS | 30.0% | |
| AAATGTAGGCATGACAATTT+AGG | - | chr1_4:52294618-52294637 | Msa0169160:CDS | 30.0% | |
| AATGTAGGCATGACAATTTA+GGG | - | chr1_4:52294619-52294638 | Msa0169160:CDS | 30.0% | |
| !! | TGGGTGATAATGTGTTTTAA+AGG | - | chr1_4:52294656-52294675 | Msa0169160:CDS | 30.0% |
| ! | GATTTGAGTTAATTGTACAG+TGG | - | chr1_4:52294802-52294821 | Msa0169160:five_prime_UTR | 30.0% |
| AGTGAGACAAATCAAGCAAA+AGG | - | chr1_4:52286720-52286739 | Msa0169160:three_prime_UTR | 35.0% | |
| GTGAGACAAATCAAGCAAAA+GGG | - | chr1_4:52286721-52286740 | Msa0169160:three_prime_UTR | 35.0% | |
| ! | CACTCACTTATTTCTTTGTG+GGG | - | chr1_4:52286751-52286770 | Msa0169160:three_prime_UTR | 35.0% |
| ACAAGGGATGAAGAATAAAG+GGG | + | chr1_4:52286819-52286838 | None:intergenic | 35.0% | |
| CAACAAGGGATGAAGAATAA+AGG | + | chr1_4:52286821-52286840 | None:intergenic | 35.0% | |
| GCACTTGTATGAAGAAAAAG+AGG | + | chr1_4:52286865-52286884 | None:intergenic | 35.0% | |
| GAGATGTGTCAATAAGGAAA+AGG | - | chr1_4:52286976-52286995 | Msa0169160:exon | 35.0% | |
| TGTCAATAAGGAAAAGGAAG+AGG | - | chr1_4:52286982-52287001 | Msa0169160:exon | 35.0% | |
| ACATCATCATAGTAGTGAGA+AGG | + | chr1_4:52287025-52287044 | None:intergenic | 35.0% | |
| !!! | ACTATTTTAAGACCCCTGTT+TGG | + | chr1_4:52287295-52287314 | None:intergenic | 35.0% |
| TAGGGATGAATTGACACTAT+TGG | + | chr1_4:52287320-52287339 | None:intergenic | 35.0% | |
| ! | TAGTACTACCCATCTGTTTT+AGG | - | chr1_4:52287359-52287378 | Msa0169160:intron | 35.0% |
| ! | AGTACTACCCATCTGTTTTA+GGG | - | chr1_4:52287360-52287379 | Msa0169160:intron | 35.0% |
| TGCTTAAGGATAATGTCACA+GGG | + | chr1_4:52287463-52287482 | None:intergenic | 35.0% | |
| ATGCTTAAGGATAATGTCAC+AGG | + | chr1_4:52287464-52287483 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATGCTTA+AGG | + | chr1_4:52287477-52287496 | None:intergenic | 35.0% | |
| !! | ACGTTGTAGCTTGTTGAAAT+TGG | - | chr1_4:52287748-52287767 | Msa0169160:CDS | 35.0% |
| !! | CGTTGTAGCTTGTTGAAATT+GGG | - | chr1_4:52287749-52287768 | Msa0169160:CDS | 35.0% |
| TGTGCTTATACAAACAACCT+TGG | - | chr1_4:52287944-52287963 | Msa0169160:intron | 35.0% | |
| TCTCTAAACATATTCTGCCA+AGG | + | chr1_4:52287964-52287983 | None:intergenic | 35.0% | |
| ATTGTCATATCTTTGATGCC+TGG | - | chr1_4:52287991-52288010 | Msa0169160:intron | 35.0% | |
| !! | TTCATGGTTCTAAACTGCAT+TGG | - | chr1_4:52288025-52288044 | Msa0169160:intron | 35.0% |
| ! | TTTTCAAACCAGTTCCAGTT+CGG | - | chr1_4:52288111-52288130 | Msa0169160:intron | 35.0% |
| ATTTCGAACCAATTTCGAAC+CGG | - | chr1_4:52288181-52288200 | Msa0169160:intron | 35.0% | |
| GAACCAGATTATTCTTGAAC+TGG | - | chr1_4:52288227-52288246 | Msa0169160:intron | 35.0% | |
| !!! | TCTTGAACTGGTTTTCAAAC+CGG | - | chr1_4:52288239-52288258 | Msa0169160:intron | 35.0% |
| ! | ATATTAAACTGGTTCCGAAC+CGG | - | chr1_4:52290609-52290628 | Msa0169160:intron | 35.0% |
| ! | GTTCAAGTTTAAAACCGGTT+CGG | + | chr1_4:52290626-52290645 | None:intergenic | 35.0% |
| ATCCATAAACTGAACCAAAC+TGG | + | chr1_4:52290712-52290731 | None:intergenic | 35.0% | |
| TGAAAATCAGAAATTGTGCC+AGG | + | chr1_4:52290770-52290789 | None:intergenic | 35.0% | |
| ! | TGAGTGGACAATTTTCTTCT+TGG | - | chr1_4:52290807-52290826 | Msa0169160:intron | 35.0% |
| !! | AACCTTCTCTAAGATAGGAA+TGG | - | chr1_4:52290941-52290960 | Msa0169160:intron | 35.0% |
| !! | ATTGAAGAGTATCGTGAAGT+TGG | - | chr1_4:52291039-52291058 | Msa0169160:intron | 35.0% |
| ! | GCTTTTCTAACATCTTCTTC+AGG | + | chr1_4:52291084-52291103 | None:intergenic | 35.0% |
| AGAAAAAGACTTGTACCATC+TGG | + | chr1_4:52291296-52291315 | None:intergenic | 35.0% | |
| !! | CTTACCATTTTTCAATGAGC+TGG | - | chr1_4:52291584-52291603 | Msa0169160:intron | 35.0% |
| AAGACCAGCTCATTGAAAAA+TGG | + | chr1_4:52291591-52291610 | None:intergenic | 35.0% | |
| TTGACAAATTCTTGAGGTTG+AGG | - | chr1_4:52291868-52291887 | Msa0169160:intron | 35.0% | |
| ! | TATCATTTTGCGCATGTATG+AGG | + | chr1_4:52291928-52291947 | None:intergenic | 35.0% |
| AATGCCACAGCCAAATAATA+AGG | - | chr1_4:52291986-52292005 | Msa0169160:intron | 35.0% | |
| ! | TCAGAGCTTGCCTTATTATT+TGG | + | chr1_4:52291999-52292018 | None:intergenic | 35.0% |
| TGCACCAAAAAAAAAAAGGC+AGG | - | chr1_4:52292035-52292054 | Msa0169160:intron | 35.0% | |
| ! | GGTTAATGTTTTGTGCACTA+TGG | + | chr1_4:52292063-52292082 | None:intergenic | 35.0% |
| GAGATGCATATATAGAGTTG+AGG | + | chr1_4:52292099-52292118 | None:intergenic | 35.0% | |
| TTACTAAGGAGTGAAGGATT+GGG | + | chr1_4:52292189-52292208 | None:intergenic | 35.0% | |
| ATTACTAAGGAGTGAAGGAT+TGG | + | chr1_4:52292190-52292209 | None:intergenic | 35.0% | |
| TTTGAATTATGCTGCTAGCT+TGG | - | chr1_4:52292299-52292318 | Msa0169160:intron | 35.0% | |
| ! | GTTTGCTTTAGACACTACAA+TGG | - | chr1_4:52292378-52292397 | Msa0169160:intron | 35.0% |
| ! | GTCAAGTTTGCTTAGATTTC+AGG | - | chr1_4:52292445-52292464 | Msa0169160:intron | 35.0% |
| ! | TCTTCTTTGATGGTTACACT+TGG | + | chr1_4:52292690-52292709 | None:intergenic | 35.0% |
| ATGTAATCCTTCAACTTAGC+AGG | - | chr1_4:52292760-52292779 | Msa0169160:intron | 35.0% | |
| !! | TCTTTTACCTGCTAAGTTGA+AGG | + | chr1_4:52292770-52292789 | None:intergenic | 35.0% |
| ! | TTTTGAACCCATCAAATGTC+AGG | - | chr1_4:52292823-52292842 | Msa0169160:intron | 35.0% |
| CCGATATAGAAGGTTACAAA+AGG | + | chr1_4:52292947-52292966 | None:intergenic | 35.0% | |
| CACCTATTTACAGGATGAAA+AGG | - | chr1_4:52293101-52293120 | Msa0169160:intron | 35.0% | |
| AAAGGATGCTATAAGAAGTC+TGG | - | chr1_4:52293119-52293138 | Msa0169160:intron | 35.0% | |
| TCTGGATCTGTTATACAGAA+GGG | - | chr1_4:52293137-52293156 | Msa0169160:intron | 35.0% | |
| CTTAGTTGCTTGATATTTGC+TGG | - | chr1_4:52293253-52293272 | Msa0169160:intron | 35.0% | |
| TGCAGTGAACACTTATATTC+TGG | + | chr1_4:52293337-52293356 | None:intergenic | 35.0% | |
| !!! | CTCTTTAGCAGCAGATTTTT+TGG | + | chr1_4:52293363-52293382 | None:intergenic | 35.0% |
| !! | ATGAAAGTTGATGCAAGCAA+AGG | + | chr1_4:52293500-52293519 | None:intergenic | 35.0% |
| GCTTGCATCAACTTTCATAT+TGG | - | chr1_4:52293502-52293521 | Msa0169160:intron | 35.0% | |
| TCATGATTGATACATTCCCA+AGG | - | chr1_4:52293768-52293787 | Msa0169160:intron | 35.0% | |
| CATGATTGATACATTCCCAA+GGG | - | chr1_4:52293769-52293788 | Msa0169160:intron | 35.0% | |
| ATCAAATGACTCAAATCCAG+GGG | + | chr1_4:52293819-52293838 | None:intergenic | 35.0% | |
| GATACCGTAGTTTGACATTA+TGG | - | chr1_4:52293875-52293894 | Msa0169160:intron | 35.0% | |
| GTTTGACATTATGGTTGAAG+TGG | - | chr1_4:52293884-52293903 | Msa0169160:intron | 35.0% | |
| ! | TCTTGTTTGTATCAGCATCA+CGG | - | chr1_4:52294219-52294238 | Msa0169160:intron | 35.0% |
| !! | TTATCATCGACTTCAAGTGA+TGG | + | chr1_4:52294255-52294274 | None:intergenic | 35.0% |
| AATCTAGTAGAGCTTCTACT+TGG | + | chr1_4:52294428-52294447 | None:intergenic | 35.0% | |
| AGTAGAAGCTCTACTAGATT+TGG | - | chr1_4:52294428-52294447 | Msa0169160:CDS | 35.0% | |
| ! | ATTTGGCCATTAGTTTGAAC+TGG | - | chr1_4:52294445-52294464 | Msa0169160:CDS | 35.0% |
| TAGCTACCAGTTCAAACTAA+TGG | + | chr1_4:52294454-52294473 | None:intergenic | 35.0% | |
| AAAATACAGGACCATCCATT+TGG | + | chr1_4:52294739-52294758 | None:intergenic | 35.0% | |
| !!! | GGTCCTGTATTTTTAGTGTT+TGG | - | chr1_4:52294746-52294765 | Msa0169160:five_prime_UTR | 35.0% |
| CACAGCAGATATATTCGTAC+CGG | + | chr1_4:52286650-52286669 | None:intergenic | 40.0% | |
| ! | ATGACACAGGGTTTAAGACA+CGG | + | chr1_4:52286674-52286693 | None:intergenic | 40.0% |
| GAAAAAGAGGGATATGGAGA+AGG | + | chr1_4:52286852-52286871 | None:intergenic | 40.0% | |
| AAGCACTTGTGAAACCAATC+AGG | - | chr1_4:52287131-52287150 | Msa0169160:CDS | 40.0% | |
| TGATATGCGCTTATCCAAAC+AGG | - | chr1_4:52287278-52287297 | Msa0169160:intron | 40.0% | |
| GATATGCGCTTATCCAAACA+GGG | - | chr1_4:52287279-52287298 | Msa0169160:intron | 40.0% | |
| ATATGCGCTTATCCAAACAG+GGG | - | chr1_4:52287280-52287299 | Msa0169160:intron | 40.0% | |
| ATAGGGACTGAAAATGCTGA+TGG | - | chr1_4:52287517-52287536 | Msa0169160:intron | 40.0% | |
| !! | TAGCTTGTTGAAATTGGGTG+AGG | - | chr1_4:52287754-52287773 | Msa0169160:CDS | 40.0% |
| ATGGTCCTATCTATCCAATG+TGG | - | chr1_4:52287805-52287824 | Msa0169160:intron | 40.0% | |
| TGGTCCTATCTATCCAATGT+GGG | - | chr1_4:52287806-52287825 | Msa0169160:intron | 40.0% | |
| AAGTCCCACATTGGATAGAT+AGG | + | chr1_4:52287813-52287832 | None:intergenic | 40.0% | |
| TATCTATCCAATGTGGGACT+TGG | - | chr1_4:52287812-52287831 | Msa0169160:intron | 40.0% | |
| ATCTATCCAATGTGGGACTT+GGG | - | chr1_4:52287813-52287832 | Msa0169160:intron | 40.0% | |
| GTCTGGTGCGTGTATATAAA+TGG | - | chr1_4:52287873-52287892 | Msa0169160:intron | 40.0% | |
| TGGTGCGTGTATATAAATGG+TGG | - | chr1_4:52287876-52287895 | Msa0169160:intron | 40.0% | |
| GCGTGTATATAAATGGTGGT+TGG | - | chr1_4:52287880-52287899 | Msa0169160:intron | 40.0% | |
| !! | GTTTTAAACCGAACTGGAAC+TGG | + | chr1_4:52288122-52288141 | None:intergenic | 40.0% |
| ! | GTTCCAGTTCGGTTTAAAAC+CGG | - | chr1_4:52288122-52288141 | Msa0169160:intron | 40.0% |
| ! | GTTTAAAACCGGTTCAGAAC+CGG | - | chr1_4:52288133-52288152 | Msa0169160:intron | 40.0% |
| !!! | ACCGGTTTACAGTTTTGAAC+CGG | - | chr1_4:52288151-52288170 | Msa0169160:intron | 40.0% |
| ! | ACCGGTTCAAAACTGTAAAC+CGG | + | chr1_4:52288155-52288174 | None:intergenic | 40.0% |
| !! | ACTGTAAACCGGTTCGAAAT+TGG | + | chr1_4:52288192-52288211 | None:intergenic | 40.0% |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | - | chr1_4:52290707-52290726 | Msa0169160:intron | 40.0% |
| ATCAGAAATTGTGCCAGGTA+GGG | + | chr1_4:52290765-52290784 | None:intergenic | 40.0% | |
| AATCAGAAATTGTGCCAGGT+AGG | + | chr1_4:52290766-52290785 | None:intergenic | 40.0% | |
| TACGGTATCAATGTGTCTCT+TGG | - | chr1_4:52290856-52290875 | Msa0169160:intron | 40.0% | |
| TGCCATTCCTATCTTAGAGA+AGG | + | chr1_4:52290946-52290965 | None:intergenic | 40.0% | |
| AAGTAGAAGAGGTGATGTCT+TGG | - | chr1_4:52291142-52291161 | Msa0169160:intron | 40.0% | |
| !!! | CAGTTTTTTTGTAGGGACAC+TGG | - | chr1_4:52291348-52291367 | Msa0169160:intron | 40.0% |
| ACTCAAGAGTTTGACAAGCA+TGG | + | chr1_4:52291721-52291740 | None:intergenic | 40.0% | |
| ! | CTTGCCTTATTATTTGGCTG+TGG | + | chr1_4:52291993-52292012 | None:intergenic | 40.0% |
| !!! | GGAGCCTGCCTTTTTTTTTT+TGG | + | chr1_4:52292042-52292061 | None:intergenic | 40.0% |
| CAACATGAATCCATCTGCAA+AGG | - | chr1_4:52292127-52292146 | Msa0169160:intron | 40.0% | |
| TACTAAGGAGTGAAGGATTG+GGG | + | chr1_4:52292188-52292207 | None:intergenic | 40.0% | |
| ! | TTGACTCGTAAACTTGCAAG+AGG | + | chr1_4:52292430-52292449 | None:intergenic | 40.0% |
| CTCGAGTTTGACAATCATGA+CGG | - | chr1_4:52292482-52292501 | Msa0169160:intron | 40.0% | |
| GTCTTTGTGAAGTAGAACTG+TGG | - | chr1_4:52292506-52292525 | Msa0169160:intron | 40.0% | |
| ATGGAGTCCCCTATGAATTT+AGG | + | chr1_4:52292548-52292567 | None:intergenic | 40.0% | |
| CAACTTAGCAGGTAAAAGAG+TGG | - | chr1_4:52292771-52292790 | Msa0169160:intron | 40.0% | |
| ! | TAGTTGGCCTGACATTTGAT+GGG | + | chr1_4:52292833-52292852 | None:intergenic | 40.0% |
| ! | ATAGTTGGCCTGACATTTGA+TGG | + | chr1_4:52292834-52292853 | None:intergenic | 40.0% |
| AACAAGATGGTCAGAGAAAG+AGG | + | chr1_4:52293069-52293088 | None:intergenic | 40.0% | |
| GTCTGGATCTGTTATACAGA+AGG | - | chr1_4:52293136-52293155 | Msa0169160:intron | 40.0% | |
| TCTGTTATACAGAAGGGTTG+AGG | - | chr1_4:52293143-52293162 | Msa0169160:intron | 40.0% | |
| TACGGCTCAACACACTTTAA+TGG | - | chr1_4:52293223-52293242 | Msa0169160:intron | 40.0% | |
| ! | GTTGATGCAAGCAAAGGTAT+GGG | + | chr1_4:52293494-52293513 | None:intergenic | 40.0% |
| ! | AGTTGATGCAAGCAAAGGTA+TGG | + | chr1_4:52293495-52293514 | None:intergenic | 40.0% |
| ATTGAGTAATCTCATCGCAG+GGG | + | chr1_4:52293687-52293706 | None:intergenic | 40.0% | |
| CATTGAGTAATCTCATCGCA+GGG | + | chr1_4:52293688-52293707 | None:intergenic | 40.0% | |
| TCATTGAGTAATCTCATCGC+AGG | + | chr1_4:52293689-52293708 | None:intergenic | 40.0% | |
| TCAAATGACTCAAATCCAGG+GGG | + | chr1_4:52293818-52293837 | None:intergenic | 40.0% | |
| CTTGTTTGTATCAGCATCAC+GGG | - | chr1_4:52294220-52294239 | Msa0169160:intron | 40.0% | |
| !! | GAGGATTGATTTTGTAAGGG+AGG | - | chr1_4:52294284-52294303 | Msa0169160:intron | 40.0% |
| ATGAATTGCTGCAAGACGTT+CGG | - | chr1_4:52294310-52294329 | Msa0169160:intron | 40.0% | |
| TTAGGGTGATGAGAATCTCT+TGG | - | chr1_4:52294636-52294655 | Msa0169160:CDS | 40.0% | |
| TAGGGTGATGAGAATCTCTT+GGG | - | chr1_4:52294637-52294656 | Msa0169160:CDS | 40.0% | |
| ACATCTACCGTCTATCCAAA+TGG | - | chr1_4:52294721-52294740 | Msa0169160:five_prime_UTR | 40.0% | |
| AAAGAAAGAGAGAGAGGTGG+AGG | + | chr1_4:52286796-52286815 | None:intergenic | 45.0% | |
| AAGGGGAAAGAAAGAGAGAG+AGG | + | chr1_4:52286802-52286821 | None:intergenic | 45.0% | |
| !! | AGAAGGTGTTGTGGCAACAA+GGG | + | chr1_4:52286835-52286854 | None:intergenic | 45.0% |
| AAGCTACGGAAACTAACCTG+GGG | + | chr1_4:52286895-52286914 | None:intergenic | 45.0% | |
| GAAGCTACGGAAACTAACCT+GGG | + | chr1_4:52286896-52286915 | None:intergenic | 45.0% | |
| AGAAGCTACGGAAACTAACC+TGG | + | chr1_4:52286897-52286916 | None:intergenic | 45.0% | |
| !! | AAGGAAGAGGTGCTTCTAGA+AGG | - | chr1_4:52286995-52287014 | Msa0169160:CDS | 45.0% |
| !! | AGGAAGAGGTGCTTCTAGAA+GGG | - | chr1_4:52286996-52287015 | Msa0169160:CDS | 45.0% |
| TATCTTTGATGCCTGGCACT+AGG | - | chr1_4:52287998-52288017 | Msa0169160:intron | 45.0% | |
| ATCTTTGATGCCTGGCACTA+GGG | - | chr1_4:52287999-52288018 | Msa0169160:intron | 45.0% | |
| !!! | GAACCGGTTTTAAACCGAAC+TGG | + | chr1_4:52288128-52288147 | None:intergenic | 45.0% |
| !! | ACTGTAAACCGGTTCTGAAC+CGG | + | chr1_4:52288144-52288163 | None:intergenic | 45.0% |
| ! | GTAGGGGTGTGCAAAAAATG+TGG | + | chr1_4:52290748-52290767 | None:intergenic | 45.0% |
| !!! | ATTTTTTGCACACCCCTACC+TGG | - | chr1_4:52290749-52290768 | Msa0169160:intron | 45.0% |
| TCAGAAATTGTGCCAGGTAG+GGG | + | chr1_4:52290764-52290783 | None:intergenic | 45.0% | |
| TAAGATAGGAATGGCAAGCC+CGG | - | chr1_4:52290950-52290969 | Msa0169160:intron | 45.0% | |
| AGTATCGTGAAGTTGGCATG+CGG | - | chr1_4:52291046-52291065 | Msa0169160:intron | 45.0% | |
| CACCTCTTCTACTTCTTCAG+CGG | + | chr1_4:52291136-52291155 | None:intergenic | 45.0% | |
| AGTTGAGGGTTACAGCTATG+AGG | + | chr1_4:52292084-52292103 | None:intergenic | 45.0% | |
| CATGAATCCATCTGCAAAGG+AGG | - | chr1_4:52292130-52292149 | Msa0169160:intron | 45.0% | |
| TCGTTTACCTCCTTTGCAGA+TGG | + | chr1_4:52292140-52292159 | None:intergenic | 45.0% | |
| ACTAAGGAGTGAAGGATTGG+GGG | + | chr1_4:52292187-52292206 | None:intergenic | 45.0% | |
| ! | ATTATGCTGCTAGCTTGGTC+TGG | - | chr1_4:52292304-52292323 | Msa0169160:intron | 45.0% |
| TGACAGCTTGACTCCAAACT+CGG | + | chr1_4:52292866-52292885 | None:intergenic | 45.0% | |
| AAAGTGTGTTGAGCCGTAGA+GGG | + | chr1_4:52293221-52293240 | None:intergenic | 45.0% | |
| TAAAGTGTGTTGAGCCGTAG+AGG | + | chr1_4:52293222-52293241 | None:intergenic | 45.0% | |
| ! | GCAAAGGTATGGGAAGGAAA+AGG | + | chr1_4:52293484-52293503 | None:intergenic | 45.0% |
| ! | ATGCAAGCAAAGGTATGGGA+AGG | + | chr1_4:52293490-52293509 | None:intergenic | 45.0% |
| GACTGAGATCTTGAAACGAG+AGG | - | chr1_4:52293658-52293677 | Msa0169160:intron | 45.0% | |
| GATTGATACATTCCCAAGGG+AGG | - | chr1_4:52293772-52293791 | Msa0169160:intron | 45.0% | |
| TGCTATATGGATCCTCCCTT+GGG | + | chr1_4:52293787-52293806 | None:intergenic | 45.0% | |
| ATGCTATATGGATCCTCCCT+TGG | + | chr1_4:52293788-52293807 | None:intergenic | 45.0% | |
| GGGGGAACAAGAATGCTATA+TGG | + | chr1_4:52293800-52293819 | None:intergenic | 45.0% | |
| TATAGCATTCTTGTTCCCCC+TGG | - | chr1_4:52293800-52293819 | Msa0169160:intron | 45.0% | |
| ACTTCAAGTGATGGTCGCAA+TGG | + | chr1_4:52294246-52294265 | None:intergenic | 45.0% | |
| TTGCAGTCCAAGTAGCTTCA+CGG | - | chr1_4:52294563-52294582 | Msa0169160:CDS | 45.0% | |
| ATACAACCCGTGAAGCTACT+TGG | + | chr1_4:52294573-52294592 | None:intergenic | 45.0% | |
| CTACCGTCTATCCAAATGGA+TGG | - | chr1_4:52294725-52294744 | Msa0169160:five_prime_UTR | 45.0% | |
| GGACCATCCATTTGGATAGA+CGG | + | chr1_4:52294731-52294750 | None:intergenic | 45.0% | |
| !!! | CATATTTTTATTTTTTTATA+AGG | - | chr1_4:52291961-52291980 | Msa0169160:intron | 5.0% |
| AGAGAGAGAGGTGGAGGTTA+GGG | + | chr1_4:52286790-52286809 | None:intergenic | 50.0% | |
| AAGAGAGAGAGGTGGAGGTT+AGG | + | chr1_4:52286791-52286810 | None:intergenic | 50.0% | |
| GGGAAAGAAAGAGAGAGAGG+TGG | + | chr1_4:52286799-52286818 | None:intergenic | 50.0% | |
| !! | GAGAAGGTGTTGTGGCAACA+AGG | + | chr1_4:52286836-52286855 | None:intergenic | 50.0% |
| !! | GGGATATGGAGAAGGTGTTG+TGG | + | chr1_4:52286844-52286863 | None:intergenic | 50.0% |
| GGAAAACCCAAGTCCCACAT+TGG | + | chr1_4:52287822-52287841 | None:intergenic | 50.0% | |
| GCACCAGACCCAATAGTGTT+GGG | + | chr1_4:52287862-52287881 | None:intergenic | 50.0% | |
| TCTTTGATGCCTGGCACTAG+GGG | - | chr1_4:52288000-52288019 | Msa0169160:intron | 50.0% | |
| !! | CTTGGTCTTTTCACGTTGCC+GGG | + | chr1_4:52290971-52290990 | None:intergenic | 50.0% |
| !! | CCTTGGTCTTTTCACGTTGC+CGG | + | chr1_4:52290972-52290991 | None:intergenic | 50.0% |
| AAGACGCAGAGAGGAAGAAG+AGG | - | chr1_4:52291002-52291021 | Msa0169160:intron | 50.0% | |
| AGCCGCTGAAGAAGTAGAAG+AGG | - | chr1_4:52291131-52291150 | Msa0169160:intron | 50.0% | |
| ATTGAGGAAGCTGCTGAGAG+AGG | - | chr1_4:52291421-52291440 | Msa0169160:intron | 50.0% | |
| GGAATCGCCTTGATCTTGCT+CGG | - | chr1_4:52291476-52291495 | Msa0169160:intron | 50.0% | |
| TCACACGAGCTTACAACCTC+AGG | - | chr1_4:52291795-52291814 | Msa0169160:intron | 50.0% | |
| CTAAGGAGTGAAGGATTGGG+GGG | + | chr1_4:52292186-52292205 | None:intergenic | 50.0% | |
| TTTCTTGGTTCCCCCCTCTA+CGG | - | chr1_4:52293205-52293224 | Msa0169160:intron | 50.0% | |
| AAGTGTGTTGAGCCGTAGAG+GGG | + | chr1_4:52293220-52293239 | None:intergenic | 50.0% | |
| ATTGCTGCAAGACGTTCGGT+CGG | - | chr1_4:52294314-52294333 | Msa0169160:intron | 50.0% | |
| TGCAGTCCAAGTAGCTTCAC+GGG | - | chr1_4:52294564-52294583 | Msa0169160:CDS | 50.0% | |
| TACAAGTGCACATCCACCCC+AGG | - | chr1_4:52286876-52286895 | Msa0169160:three_prime_UTR | 55.0% | |
| CTACGGAAACTAACCTGGGG+TGG | + | chr1_4:52286892-52286911 | None:intergenic | 55.0% | |
| ! | CAATAGTGTTGGGCGTGAGG+GGG | + | chr1_4:52287852-52287871 | None:intergenic | 55.0% |
| ! | CCAATAGTGTTGGGCGTGAG+GGG | + | chr1_4:52287853-52287872 | None:intergenic | 55.0% |
| ! | CCCAATAGTGTTGGGCGTGA+GGG | + | chr1_4:52287854-52287873 | None:intergenic | 55.0% |
| CCCTCACGCCCAACACTATT+GGG | - | chr1_4:52287851-52287870 | Msa0169160:intron | 55.0% | |
| ! | ACCCAATAGTGTTGGGCGTG+AGG | + | chr1_4:52287855-52287874 | None:intergenic | 55.0% |
| ACGCCCAACACTATTGGGTC+TGG | - | chr1_4:52287856-52287875 | Msa0169160:intron | 55.0% | |
| CGCACCAGACCCAATAGTGT+TGG | + | chr1_4:52287863-52287882 | None:intergenic | 55.0% | |
| TGGTGGTTGGCGCTATCGAT+AGG | - | chr1_4:52287893-52287912 | Msa0169160:intron | 55.0% | |
| CCGGCAACGTGAAAAGACCA+AGG | - | chr1_4:52290969-52290988 | Msa0169160:intron | 55.0% | |
| GCGTCTTCGATGCAACTCCT+TGG | + | chr1_4:52290989-52291008 | None:intergenic | 55.0% | |
| GTTGCATCGAAGACGCAGAG+AGG | - | chr1_4:52290993-52291012 | Msa0169160:intron | 55.0% | |
| TGAAGTTGGCATGCGGCTGA+AGG | - | chr1_4:52291053-52291072 | Msa0169160:intron | 55.0% | |
| CATCACGCCGAGCAAGATCA+AGG | + | chr1_4:52291486-52291505 | None:intergenic | 55.0% | |
| !! | TAAGGCAAGCTCTGAGCCAC+TGG | - | chr1_4:52292004-52292023 | Msa0169160:intron | 55.0% |
| ! | CTGCTAGCTTGGTCTGGTCT+GGG | - | chr1_4:52292310-52292329 | Msa0169160:intron | 55.0% |
| AGTGTGTTGAGCCGTAGAGG+GGG | + | chr1_4:52293219-52293238 | None:intergenic | 55.0% | |
| GAGAGGTGGAGGTTAGGGAG+AGG | + | chr1_4:52286785-52286804 | None:intergenic | 60.0% | |
| ! | TGGGCGTGAGGGGGTGTATT+GGG | + | chr1_4:52287843-52287862 | None:intergenic | 60.0% |
| ! | TTGGGCGTGAGGGGGTGTAT+TGG | + | chr1_4:52287844-52287863 | None:intergenic | 60.0% |
| CCCCTCACGCCCAACACTAT+TGG | - | chr1_4:52287850-52287869 | Msa0169160:intron | 60.0% | |
| CCATGAACACCCCTAGTGCC+AGG | + | chr1_4:52288012-52288031 | None:intergenic | 60.0% | |
| !! | CCTGGCACTAGGGGTGTTCA+TGG | - | chr1_4:52288009-52288028 | Msa0169160:intron | 60.0% |
| TTGGTGCAATGCTGGGCCAG+TGG | + | chr1_4:52292023-52292042 | None:intergenic | 60.0% | |
| ! | GCTGCTAGCTTGGTCTGGTC+TGG | - | chr1_4:52292309-52292328 | Msa0169160:intron | 60.0% |
| GTGTGTTGAGCCGTAGAGGG+GGG | + | chr1_4:52293218-52293237 | None:intergenic | 60.0% | |
| GCAAGACGTTCGGTCGGAAC+AGG | - | chr1_4:52294320-52294339 | Msa0169160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52286622 | 52294833 | 52286622 | ID=Msa0169160;Name=Msa0169160 |
| chr1_4 | mRNA | 52286622 | 52294833 | 52286622 | ID=Msa0169160-mRNA-1;Parent=Msa0169160;Name=Msa0169160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152|1|1|1|1|1|7|363|318 |
| chr1_4 | exon | 52286622 | 52287221 | 52286622 | ID=Msa0169160-mRNA-1:exon:15489;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52287608 | 52287796 | 52287608 | ID=Msa0169160-mRNA-1:exon:15488;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52288291 | 52288341 | 52288291 | ID=Msa0169160-mRNA-1:exon:15487;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52289951 | 52290037 | 52289951 | ID=Msa0169160-mRNA-1:exon:15486;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52290303 | 52290497 | 52290303 | ID=Msa0169160-mRNA-1:exon:15485;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52294413 | 52294486 | 52294413 | ID=Msa0169160-mRNA-1:exon:15484;Parent=Msa0169160-mRNA-1 |
| chr1_4 | exon | 52294558 | 52294833 | 52294558 | ID=Msa0169160-mRNA-1:exon:15483;Parent=Msa0169160-mRNA-1 |
| chr1_4 | five_prime_UTR | 52294682 | 52294833 | 52294682 | ID=Msa0169160-mRNA-1:five_prime_utr;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52294558 | 52294681 | 52294558 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52294413 | 52294486 | 52294413 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52290303 | 52290497 | 52290303 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52289951 | 52290037 | 52289951 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52288291 | 52288341 | 52288291 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52287608 | 52287796 | 52287608 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | CDS | 52286985 | 52287221 | 52286985 | ID=Msa0169160-mRNA-1:cds;Parent=Msa0169160-mRNA-1 |
| chr1_4 | three_prime_UTR | 52286622 | 52286984 | 52286622 | ID=Msa0169160-mRNA-1:three_prime_utr;Parent=Msa0169160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
