AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0082470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082470 MtrunA17_Chr1g0185851 97.484 318 8 0 1 318 3 320 0.0 627
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0082470 AT2G48120.1 67.290 321 94 5 1 318 1 313 7.39e-117 340
Msa0082470 AT2G48120.2 65.421 321 94 6 1 318 1 307 3.64e-109 320

Find 87 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGTAGGCATGACAATTT+AGG 0.217139 1_2:+61320423 Msa0082470:three_prime_UTR
AGAGAGAGAGGTGGAGGTTA+GGG 0.267578 1_2:-61315167 None:intergenic
AAGAGAGAGAGGTGGAGGTT+AGG 0.281785 1_2:-61315168 None:intergenic
CTCACTCACTTATTTCTTTG+TGG 0.347400 1_2:+61315129 Msa0082470:five_prime_UTR
TTTAAGGAGATGTGTCAATA+AGG 0.357043 1_2:+61315350 Msa0082470:CDS
AGTAGAAGCTCTACTAGATT+TGG 0.362994 1_2:+61320233 Msa0082470:CDS
AAGGAAGAGGTGCTTCTAGA+AGG 0.394925 1_2:+61315375 Msa0082470:CDS
CAACAAGGGATGAAGAATAA+AGG 0.401851 1_2:-61315198 None:intergenic
TCACTCACTTATTTCTTTGT+GGG 0.404033 1_2:+61315130 Msa0082470:five_prime_UTR
ATATCAAATGACTCAAATCC+AGG 0.411113 1_2:-61319623 None:intergenic
AACAAGGGATGAAGAATAAA+GGG 0.424652 1_2:-61315197 None:intergenic
AAAATACAGGACCATCCATT+TGG 0.426100 1_2:-61320541 None:intergenic
GCAAGACGTTCGGTCGGAAC+AGG 0.428212 1_2:+61320125 Msa0082470:CDS
AATGTAGGCATGACAATTTA+GGG 0.429658 1_2:+61320424 Msa0082470:three_prime_UTR
CACCTATTTACAGGATGAAA+AGG 0.437281 1_2:+61318907 Msa0082470:intron
ATACAACCCGTGAAGCTACT+TGG 0.438626 1_2:-61320375 None:intergenic
TGCTATATGGATCCTCCCTT+GGG 0.442722 1_2:-61319589 None:intergenic
AAAGGATGCTATAAGAAGTC+TGG 0.442751 1_2:+61318925 Msa0082470:CDS
GAGATGTGTCAATAAGGAAA+AGG 0.455841 1_2:+61315356 Msa0082470:CDS
TGCTAATATATTAAAACAGC+AGG 0.458418 1_2:+61320188 Msa0082470:CDS
AGTGAGACAAATCAAGCAAA+AGG 0.462570 1_2:+61315100 Msa0082470:five_prime_UTR
ATTTGGCCATTAGTTTGAAC+TGG 0.463487 1_2:+61320250 Msa0082470:CDS
TAGCTACCAGTTCAAACTAA+TGG 0.463566 1_2:-61320256 None:intergenic
AAAGAAAGAGAGAGAGGTGG+AGG 0.464054 1_2:-61315173 None:intergenic
ATGCTATATGGATCCTCCCT+TGG 0.473549 1_2:-61319590 None:intergenic
TTAGGGTGATGAGAATCTCT+TGG 0.474941 1_2:+61320441 Msa0082470:three_prime_UTR
ACATCTACCGTCTATCCAAA+TGG 0.476502 1_2:+61320526 Msa0082470:three_prime_UTR
ATGAATTGCTGCAAGACGTT+CGG 0.477719 1_2:+61320115 Msa0082470:CDS
TTGCAGTCCAAGTAGCTTCA+CGG 0.488315 1_2:+61320368 Msa0082470:three_prime_UTR
TGCAGTCCAAGTAGCTTCAC+GGG 0.488385 1_2:+61320369 Msa0082470:three_prime_UTR
TAGGGTGATGAGAATCTCTT+GGG 0.489366 1_2:+61320442 Msa0082470:three_prime_UTR
CATCACGCCGAGCAAGATCA+AGG 0.493288 1_2:-61317291 None:intergenic
GAGAGGTGGAGGTTAGGGAG+AGG 0.495213 1_2:-61315162 None:intergenic
GCGTCTTCGATGCAACTCCT+TGG 0.495907 1_2:-61316794 None:intergenic
TCATTGAGTAATCTCATCGC+AGG 0.500918 1_2:-61319491 None:intergenic
CACTCACTTATTTCTTTGTG+GGG 0.503049 1_2:+61315131 Msa0082470:five_prime_UTR
AGCCGCTGAAGAAGTAGAAG+AGG 0.505834 1_2:+61316939 Msa0082470:CDS
ATTGAAGAGTATCGTGAAGT+TGG 0.507618 1_2:+61316847 Msa0082470:CDS
AAGGGGAAAGAAAGAGAGAG+AGG 0.513435 1_2:-61315179 None:intergenic
CTTGTTTGTATCAGCATCAC+GGG 0.514765 1_2:+61320025 Msa0082470:intron
TAAGATAGGAATGGCAAGCC+CGG 0.518072 1_2:+61316758 Msa0082470:intron
AATCTAGTAGAGCTTCTACT+TGG 0.521112 1_2:-61320230 None:intergenic
GTAAAATGACACACAAATGT+AGG 0.536932 1_2:+61320409 Msa0082470:three_prime_UTR
GTCTGGATCTGTTATACAGA+AGG 0.537384 1_2:+61318942 Msa0082470:CDS
GGGAAAGAAAGAGAGAGAGG+TGG 0.537915 1_2:-61315176 None:intergenic
GTGAGACAAATCAAGCAAAA+GGG 0.544176 1_2:+61315101 Msa0082470:five_prime_UTR
TGAAGTTGGCATGCGGCTGA+AGG 0.547056 1_2:+61316861 Msa0082470:CDS
AGGAAGAGGTGCTTCTAGAA+GGG 0.551744 1_2:+61315376 Msa0082470:CDS
ATCAAATGACTCAAATCCAG+GGG 0.552629 1_2:-61319621 None:intergenic
GAGAAGGTGTTGTGGCAACA+AGG 0.557255 1_2:-61315213 None:intergenic
TATTCAACACTATAAACTGT+AGG 0.557966 1_2:-61320325 None:intergenic
ATCAAGATATATTCTGACAC+AGG 0.564736 1_2:-61315064 None:intergenic
TATCAAATGACTCAAATCCA+GGG 0.569402 1_2:-61319622 None:intergenic
TGTCAATAAGGAAAAGGAAG+AGG 0.574293 1_2:+61315362 Msa0082470:CDS
AAGACGCAGAGAGGAAGAAG+AGG 0.575839 1_2:+61316810 Msa0082470:CDS
ATTGAGGAAGCTGCTGAGAG+AGG 0.576137 1_2:+61317229 Msa0082470:CDS
CACAGCAGATATATTCGTAC+CGG 0.578542 1_2:-61315027 None:intergenic
TCTTGTTTGTATCAGCATCA+CGG 0.580699 1_2:+61320024 Msa0082470:intron
CACCTCTTCTACTTCTTCAG+CGG 0.584322 1_2:-61316941 None:intergenic
CTACGGAAACTAACCTGGGG+TGG 0.585661 1_2:-61315269 None:intergenic
GGAATCGCCTTGATCTTGCT+CGG 0.587486 1_2:+61317284 Msa0082470:CDS
CATTGAGTAATCTCATCGCA+GGG 0.591092 1_2:-61319490 None:intergenic
AAGAAGATGTTAGAAAAGCA+AGG 0.592506 1_2:+61316893 Msa0082470:CDS
TACAAGTGCACATCCACCCC+AGG 0.593995 1_2:+61315256 Msa0082470:CDS
CTACCGTCTATCCAAATGGA+TGG 0.604825 1_2:+61320530 Msa0082470:three_prime_UTR
GGGATATGGAGAAGGTGTTG+TGG 0.606948 1_2:-61315221 None:intergenic
ACATCATCATAGTAGTGAGA+AGG 0.607348 1_2:-61315402 None:intergenic
GGACCATCCATTTGGATAGA+CGG 0.609110 1_2:-61320533 None:intergenic
TCTGGATCTGTTATACAGAA+GGG 0.611300 1_2:+61318943 Msa0082470:CDS
GACTGAGATCTTGAAACGAG+AGG 0.614776 1_2:+61319463 Msa0082470:intron
CTGACACAGGGTTTAAGACA+CGG 0.618700 1_2:-61315051 None:intergenic
ACTTCAAGTGATGGTCGCAA+TGG 0.623785 1_2:-61320048 None:intergenic
TCTGTTATACAGAAGGGTTG+AGG 0.625946 1_2:+61318949 Msa0082470:CDS
GATTTGAGTTAATTGTACAG+TGG 0.628519 1_2:+61320607 Msa0082470:three_prime_UTR
TCATGATTGATACATTCCCA+AGG 0.636948 1_2:+61319573 Msa0082470:CDS
TTATCATCGACTTCAAGTGA+TGG 0.637619 1_2:-61320057 None:intergenic
TCAAGATATATTCTGACACA+GGG 0.646742 1_2:-61315063 None:intergenic
CATGATTGATACATTCCCAA+GGG 0.662825 1_2:+61319574 Msa0082470:CDS
GTTGCATCGAAGACGCAGAG+AGG 0.670357 1_2:+61316801 Msa0082470:CDS
ATTGCTGCAAGACGTTCGGT+CGG 0.675176 1_2:+61320119 Msa0082470:CDS
AGAAGGTGTTGTGGCAACAA+GGG 0.680247 1_2:-61315212 None:intergenic
GATTGATACATTCCCAAGGG+AGG 0.682890 1_2:+61319577 Msa0082470:CDS
ACAAGGGATGAAGAATAAAG+GGG 0.691512 1_2:-61315196 None:intergenic
CCGGCAACGTGAAAAGACCA+AGG 0.699550 1_2:+61316777 Msa0082470:CDS
AGTATCGTGAAGTTGGCATG+CGG 0.712651 1_2:+61316854 Msa0082470:CDS
ATTGAGTAATCTCATCGCAG+GGG 0.726511 1_2:-61319489 None:intergenic
TCAAATGACTCAAATCCAGG+GGG 0.733559 1_2:-61319620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTGATTATTTTGATTT+TGG + chr1_2:61315320-61315339 Msa0082470:intron 10.0%
!!! AAATGTAATTATATTTTGTA+GGG - chr1_2:61316001-61316020 None:intergenic 10.0%
!!! AAAATGTAATTATATTTTGT+AGG - chr1_2:61316002-61316021 None:intergenic 10.0%
!! GTATATTATTGTATATAAAA+TGG - chr1_2:61318373-61318392 None:intergenic 10.0%
!!! TTATAAAAAGTTGCTATTTA+TGG + chr1_2:61315612-61315631 Msa0082470:intron 15.0%
!! AATAGAGTAAAAATTGTTTA+TGG - chr1_2:61315736-61315755 None:intergenic 15.0%
!! AAAAAAAACACGATTAAATA+GGG - chr1_2:61315901-61315920 None:intergenic 15.0%
!! AAAAAAAAACACGATTAAAT+AGG - chr1_2:61315902-61315921 None:intergenic 15.0%
!! CAAAATTCTGAATATTTATA+GGG - chr1_2:61315970-61315989 None:intergenic 15.0%
!! ACAAAATTCTGAATATTTAT+AGG - chr1_2:61315971-61315990 None:intergenic 15.0%
!!! AAAAATTCTGTAAACATTTT+TGG - chr1_2:61316062-61316081 None:intergenic 15.0%
!!! ATGTTTACAGAATTTTTTAT+AGG + chr1_2:61316065-61316084 Msa0082470:intron 15.0%
!!! TGTTTACAGAATTTTTTATA+GGG + chr1_2:61316066-61316085 Msa0082470:intron 15.0%
!!! AATGTGTGATTTTATTTTAT+AGG + chr1_2:61316156-61316175 Msa0082470:intron 15.0%
!!! ATGTGTGATTTTATTTTATA+GGG + chr1_2:61316157-61316176 Msa0082470:intron 15.0%
!! AATATTTATCATAACTAATC+AGG - chr1_2:61317061-61317080 None:intergenic 15.0%
!!! AAAAAGCATAAATAAACAAA+AGG - chr1_2:61317127-61317146 None:intergenic 15.0%
!!! TTTGAAATATTTTAGGTAAT+TGG + chr1_2:61317332-61317351 Msa0082470:intron 15.0%
!! ATTATTTGTCAAAAAAAAAG+TGG - chr1_2:61318548-61318567 None:intergenic 15.0%
!! GTCTATCATAATAAATTATT+TGG - chr1_2:61318701-61318720 None:intergenic 15.0%
!! TATGATTATTATAATCTGAA+AGG + chr1_2:61318779-61318798 Msa0082470:intron 15.0%
!! ATGATTATTATAATCTGAAA+GGG + chr1_2:61318780-61318799 Msa0082470:intron 15.0%
!!! TAATATTTTTTCCCTATAAT+AGG - chr1_2:61319103-61319122 None:intergenic 15.0%
!! ATCCAATGTATTTAAAAAAA+TGG - chr1_2:61319258-61319277 None:intergenic 15.0%
!!! TTTTACCAAATCTATAATAA+CGG + chr1_2:61319658-61319677 Msa0082470:intron 15.0%
!! ATTTAACCAACTTATATAAA+TGG - chr1_2:61319832-61319851 None:intergenic 15.0%
!!! ATAAGTTTGATTTAAAAGTA+AGG + chr1_2:61319920-61319939 Msa0082470:intron 15.0%
!!! GTATTTTGATTTACATATAT+CGG + chr1_2:61320293-61320312 Msa0082470:three_prime_UTR 15.0%
!!! TATTTTAGCACAAATTTTAC+CGG + chr1_2:61315008-61315027 Msa0082470:five_prime_UTR 20.0%
!! TATCAGCTTAATTAAGTTTA+TGG + chr1_2:61315480-61315499 Msa0082470:intron 20.0%
!! ATCAGCTTAATTAAGTTTAT+GGG + chr1_2:61315481-61315500 Msa0082470:intron 20.0%
!!! TACCTATCTATTTTGTTTTA+GGG + chr1_2:61315927-61315946 Msa0082470:intron 20.0%
!!! TTTAGGGTTAATTAAGTAAA+TGG + chr1_2:61315943-61315962 Msa0082470:intron 20.0%
!! ACGAAATTCTGAATATTTAT+AGG + chr1_2:61316187-61316206 Msa0082470:intron 20.0%
!! CGAAATTCTGAATATTTATA+GGG + chr1_2:61316188-61316207 Msa0082470:intron 20.0%
!! ATTAAACCTTCAAACAAAAT+TGG - chr1_2:61316713-61316732 None:intergenic 20.0%
!!! TTTTGTTTGAAGGTTTAATT+TGG + chr1_2:61316714-61316733 Msa0082470:intron 20.0%
!! TTGAAAATAAAACTTGATCA+TGG - chr1_2:61317021-61317040 None:intergenic 20.0%
!!! TTTGGTGTTTGAAATATTTT+AGG + chr1_2:61317325-61317344 Msa0082470:intron 20.0%
!! TTGTTCACAAAATCAAAAAT+TGG - chr1_2:61317495-61317514 None:intergenic 20.0%
!!! ATAGTTGACTTTTATTTTTG+TGG + chr1_2:61318162-61318181 Msa0082470:intron 20.0%
!!! TTCTGAAAATACTACAAATT+TGG + chr1_2:61318398-61318417 Msa0082470:intron 20.0%
!! TAAAATACTTTCTTCTTTGA+TGG - chr1_2:61318506-61318525 None:intergenic 20.0%
!! TGTTTATTTCAAAAAGTAGT+CGG + chr1_2:61318835-61318854 Msa0082470:intron 20.0%
!! GATTAATGTATAAAACAAGA+TGG - chr1_2:61318888-61318907 None:intergenic 20.0%
!!! TTTTAGTCATAAACAAAAAG+GGG - chr1_2:61318988-61319007 None:intergenic 20.0%
!!! GTTTTAGTCATAAACAAAAA+GGG - chr1_2:61318989-61319008 None:intergenic 20.0%
!!! AAATCAACAAAGAGTATTTA+CGG - chr1_2:61319201-61319220 None:intergenic 20.0%
!!! CTCCATTTTTTTAAATACAT+TGG + chr1_2:61319253-61319272 Msa0082470:intron 20.0%
!! TTAGTTAACAATTGATCAAT+TGG - chr1_2:61319780-61319799 None:intergenic 20.0%
!! AATCAACCATTTATATAAGT+TGG + chr1_2:61319823-61319842 Msa0082470:intron 20.0%
!! ATTAAGTGATTAAACTTGAT+TGG + chr1_2:61319883-61319902 Msa0082470:intron 20.0%
!!! CCTACAATTTTTAGTTTAAA+TGG - chr1_2:61319957-61319976 None:intergenic 20.0%
!! CCATTTAAACTAAAAATTGT+AGG + chr1_2:61319954-61319973 Msa0082470:intron 20.0%
!!! ATAATGTGTTTTAAAGGTAA+AGG + chr1_2:61320467-61320486 Msa0082470:three_prime_UTR 20.0%
! ATTGAAATATGTAGAAGCTA+CGG - chr1_2:61315289-61315308 None:intergenic 25.0%
! GAAAAACAGAAATGATAAGA+AGG - chr1_2:61315439-61315458 None:intergenic 25.0%
! ATTTCCCTAAGTTTATATTC+TGG + chr1_2:61315668-61315687 Msa0082470:intron 25.0%
! TATGCCAGAATATAAACTTA+GGG - chr1_2:61315675-61315694 None:intergenic 25.0%
! TTATGCCAGAATATAAACTT+AGG - chr1_2:61315676-61315695 None:intergenic 25.0%
!! ATTTTTACTCTATTTCCACT+AGG + chr1_2:61315742-61315761 Msa0082470:intron 25.0%
!!! CTACCTATCTATTTTGTTTT+AGG + chr1_2:61315926-61315945 Msa0082470:intron 25.0%
! AACCCTAAAACAAAATAGAT+AGG - chr1_2:61315932-61315951 None:intergenic 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr1_2:61316034-61316053 Msa0082470:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr1_2:61316035-61316054 Msa0082470:intron 25.0%
!! TGCTGATGGAAAATTTTATA+AGG + chr1_2:61316097-61316116 Msa0082470:intron 25.0%
! CAAAGGGTTAATTAAGTAAT+TGG - chr1_2:61316215-61316234 None:intergenic 25.0%
! GCTAACAACAATAAAACAAA+GGG - chr1_2:61316231-61316250 None:intergenic 25.0%
! AGCTAACAACAATAAAACAA+AGG - chr1_2:61316232-61316251 None:intergenic 25.0%
! ATTGATAAGAGTTTGTAAAG+AGG - chr1_2:61316353-61316372 None:intergenic 25.0%
! TCTTTACAAACTCTTATCAA+TGG + chr1_2:61316352-61316371 Msa0082470:intron 25.0%
!! TTATGTTTTCCTTTTATGAG+TGG + chr1_2:61316599-61316618 Msa0082470:intron 25.0%
!!! TAATTAACCTTCTCTAAGAT+AGG + chr1_2:61316744-61316763 Msa0082470:intron 25.0%
!! ATTTTATCTGCATGACAAAT+AGG - chr1_2:61316992-61317011 None:intergenic 25.0%
!! GAAAATATTTTCATTCCAGA+TGG + chr1_2:61317086-61317105 Msa0082470:intron 25.0%
!!! TTAGTGATCAGTTTTTTTGT+AGG + chr1_2:61317148-61317167 Msa0082470:intron 25.0%
!!! TAGTGATCAGTTTTTTTGTA+GGG + chr1_2:61317149-61317168 Msa0082470:intron 25.0%
! TACAAGAGAAAAAGATCAAT+CGG - chr1_2:61317205-61317224 None:intergenic 25.0%
!! TTTTCTCTTGTAGAAAATTG+AGG + chr1_2:61317213-61317232 Msa0082470:intron 25.0%
! AATCAAAAATTGGATAACTG+AGG - chr1_2:61317485-61317504 None:intergenic 25.0%
!!! ATTGTTTTTGTCTTAACTCT+TGG + chr1_2:61317657-61317676 Msa0082470:intron 25.0%
! CGAAAGATTCAAAATTACTA+AGG - chr1_2:61318008-61318027 None:intergenic 25.0%
! TAATTACAGCCTAAATTCAT+AGG + chr1_2:61318342-61318361 Msa0082470:intron 25.0%
! AATTACAGCCTAAATTCATA+GGG + chr1_2:61318343-61318362 Msa0082470:intron 25.0%
! TTTGTCAAAAAAAAAGTGGA+AGG - chr1_2:61318544-61318563 None:intergenic 25.0%
! TACATTAATCACCTATTTAC+AGG + chr1_2:61318898-61318917 Msa0082470:intron 25.0%
!!! CGTTTTAGTCATAAACAAAA+AGG - chr1_2:61318990-61319009 None:intergenic 25.0%
!! CAGAAACTAAAGTATTATGA+AGG - chr1_2:61319343-61319362 None:intergenic 25.0%
!! CAGAAACTAAAGTATTATGA+AGG - chr1_2:61319343-61319362 None:intergenic 25.0%
!! AGTTTGATTTAAAAGTAAGG+TGG + chr1_2:61319923-61319942 Msa0082470:intron 25.0%
!!! TTTTGAGGATTGATTTTGTA+AGG + chr1_2:61320085-61320104 Msa0082470:CDS 25.0%
!!! TTTGAGGATTGATTTTGTAA+GGG + chr1_2:61320086-61320105 Msa0082470:CDS 25.0%
! TGCTAATATATTAAAACAGC+AGG + chr1_2:61320188-61320207 Msa0082470:CDS 25.0%
! TATTCAACACTATAAACTGT+AGG - chr1_2:61320328-61320347 None:intergenic 25.0%
!!! ATTTGTGTGTCATTTTACAA+GGG - chr1_2:61320407-61320426 None:intergenic 25.0%
! AAACCAAACACTAAAAATAC+AGG - chr1_2:61320557-61320576 None:intergenic 25.0%
!!! TGTATTTTTAGTGTTTGGTT+TGG + chr1_2:61320556-61320575 Msa0082470:three_prime_UTR 25.0%
TCAAGATATATTCTGACACA+GGG - chr1_2:61315066-61315085 None:intergenic 30.0%
ATCAAGATATATTCTGACAC+AGG - chr1_2:61315067-61315086 None:intergenic 30.0%
! TCACTCACTTATTTCTTTGT+GGG + chr1_2:61315130-61315149 Msa0082470:five_prime_UTR 30.0%
AACAAGGGATGAAGAATAAA+GGG - chr1_2:61315200-61315219 None:intergenic 30.0%
TATGAAGAAAAAGAGGGATA+TGG - chr1_2:61315238-61315257 None:intergenic 30.0%
CACTTGTATGAAGAAAAAGA+GGG - chr1_2:61315244-61315263 None:intergenic 30.0%
!! TGATTTTGGTCACAGTTTTA+AGG + chr1_2:61315334-61315353 Msa0082470:intron 30.0%
TTTAAGGAGATGTGTCAATA+AGG + chr1_2:61315350-61315369 Msa0082470:CDS 30.0%
AACAGAAATGATAAGAAGGA+AGG - chr1_2:61315435-61315454 None:intergenic 30.0%
ATGTCATAAATTGTCCTGAT+TGG - chr1_2:61315711-61315730 None:intergenic 30.0%
!!! GCTTTTTTAAGTTATCCTAG+TGG - chr1_2:61315760-61315779 None:intergenic 30.0%
ATAAGCGCATATCATATAAG+TGG - chr1_2:61315835-61315854 None:intergenic 30.0%
ATAAGGACTAAAAATGCTGA+CGG + chr1_2:61316114-61316133 Msa0082470:intron 30.0%
! ATGCTGACGGAAAATTTTAT+AGG + chr1_2:61316127-61316146 Msa0082470:intron 30.0%
! TGCTGACGGAAAATTTTATA+GGG + chr1_2:61316128-61316147 Msa0082470:intron 30.0%
CTTCAAAGAACTACTAAACA+TGG - chr1_2:61316289-61316308 None:intergenic 30.0%
CTAATATTTGTCAGCCAATT+AGG + chr1_2:61316484-61316503 Msa0082470:intron 30.0%
GAAAATTGTCCACTCATAAA+AGG - chr1_2:61316611-61316630 None:intergenic 30.0%
!! TAAGAACTGTAAAAGCGTTA+CGG + chr1_2:61316646-61316665 Msa0082470:intron 30.0%
!! GTGAAACCAATTTTGTTTGA+AGG + chr1_2:61316704-61316723 Msa0082470:intron 30.0%
! CTTTTCTAACATCTTCTTCA+GGG - chr1_2:61316891-61316910 None:intergenic 30.0%
AAGAAGATGTTAGAAAAGCA+AGG + chr1_2:61316893-61316912 Msa0082470:CDS 30.0%
!!! ACTTACTGAACTTGTTTTGA+TGG + chr1_2:61317255-61317274 Msa0082470:CDS 30.0%
!!! AACTTGTTTTGATGGTCATA+TGG + chr1_2:61317263-61317282 Msa0082470:CDS 30.0%
!!! CGTGATGTAAGTTGTTATTT+TGG + chr1_2:61317307-61317326 Msa0082470:intron 30.0%
! ATCTTCGGTTACAGTTTTTA+AGG + chr1_2:61317429-61317448 Msa0082470:intron 30.0%
! TGATTTTGTGAACAACATAG+TGG + chr1_2:61317500-61317519 Msa0082470:intron 30.0%
AGTTTGACAAGCATGTAAAA+TGG - chr1_2:61317564-61317583 None:intergenic 30.0%
!! TAACTCAATTTTGATACCTG+AGG - chr1_2:61317622-61317641 None:intergenic 30.0%
!!! TTTTTTTTTGGTGCAATGGT+GGG - chr1_2:61317838-61317857 None:intergenic 30.0%
AGATGCATATATAGAGTTGA+GGG - chr1_2:61317904-61317923 None:intergenic 30.0%
TCAAAATTACTAAGGAGTGA+AGG - chr1_2:61318000-61318019 None:intergenic 30.0%
AACAGAACATACAGCAAAAT+AGG - chr1_2:61318085-61318104 None:intergenic 30.0%
ATTACAGCCTAAATTCATAG+GGG + chr1_2:61318344-61318363 Msa0082470:intron 30.0%
!!! TTTTTTGATACTGCTGAAGT+TGG - chr1_2:61318459-61318478 None:intergenic 30.0%
! ACTCGGTGAAAATAAATAGT+TGG - chr1_2:61318655-61318674 None:intergenic 30.0%
! CCTTTTGTAACCTTCTATAT+CGG + chr1_2:61318750-61318769 Msa0082470:intron 30.0%
CATATCATATCCGATATAGA+AGG - chr1_2:61318763-61318782 None:intergenic 30.0%
! ATCCTTTTCATCCTGTAAAT+AGG - chr1_2:61318912-61318931 None:intergenic 30.0%
TTATGACTAAAACGCTTTCT+TGG + chr1_2:61318996-61319015 Msa0082470:intron 30.0%
ATGTCTTAAGAGCCTATTAT+AGG + chr1_2:61319088-61319107 Msa0082470:intron 30.0%
TGTCTTAAGAGCCTATTATA+GGG + chr1_2:61319089-61319108 Msa0082470:intron 30.0%
! TCTGTTCTGAGTTTAACTTT+CGG + chr1_2:61319359-61319378 Msa0082470:intron 30.0%
!!! TTCGGTTTTGACTTTCATAT+TGG + chr1_2:61319377-61319396 Msa0082470:intron 30.0%
! TCTGTTCTGAGTTTAACTTT+CGG + chr1_2:61319359-61319378 Msa0082470:intron 30.0%
!! GATCTTTTGATTATGTACGA+TGG + chr1_2:61319512-61319531 Msa0082470:CDS 30.0%
!!! ATGGCTTTAATTTTGATGAG+TGG + chr1_2:61319531-61319550 Msa0082470:CDS 30.0%
TATCAAATGACTCAAATCCA+GGG - chr1_2:61319625-61319644 None:intergenic 30.0%
ATATCAAATGACTCAAATCC+AGG - chr1_2:61319626-61319645 None:intergenic 30.0%
GGTATCCGTTATTATAGATT+TGG - chr1_2:61319666-61319685 None:intergenic 30.0%
TCAACCATAATGTCAAACTA+CGG - chr1_2:61319687-61319706 None:intergenic 30.0%
!! AGTGGATTCTAAAGTACAAT+CGG + chr1_2:61319707-61319726 Msa0082470:intron 30.0%
! TCGATGATAATACTCTTTTG+AGG + chr1_2:61320070-61320089 Msa0082470:CDS 30.0%
!!! TTTGTGTGTCATTTTACAAG+GGG - chr1_2:61320406-61320425 None:intergenic 30.0%
!!! CATTTGTGTGTCATTTTACA+AGG - chr1_2:61320408-61320427 None:intergenic 30.0%
GTAAAATGACACACAAATGT+AGG + chr1_2:61320409-61320428 Msa0082470:three_prime_UTR 30.0%
AAATGTAGGCATGACAATTT+AGG + chr1_2:61320423-61320442 Msa0082470:three_prime_UTR 30.0%
AATGTAGGCATGACAATTTA+GGG + chr1_2:61320424-61320443 Msa0082470:three_prime_UTR 30.0%
!! TGGGTGATAATGTGTTTTAA+AGG + chr1_2:61320461-61320480 Msa0082470:three_prime_UTR 30.0%
! GATTTGAGTTAATTGTACAG+TGG + chr1_2:61320607-61320626 Msa0082470:three_prime_UTR 30.0%
AGTGAGACAAATCAAGCAAA+AGG + chr1_2:61315100-61315119 Msa0082470:five_prime_UTR 35.0%
GTGAGACAAATCAAGCAAAA+GGG + chr1_2:61315101-61315120 Msa0082470:five_prime_UTR 35.0%
! CTCACTCACTTATTTCTTTG+TGG + chr1_2:61315129-61315148 Msa0082470:five_prime_UTR 35.0%
! CACTCACTTATTTCTTTGTG+GGG + chr1_2:61315131-61315150 Msa0082470:five_prime_UTR 35.0%
ACAAGGGATGAAGAATAAAG+GGG - chr1_2:61315199-61315218 None:intergenic 35.0%
CAACAAGGGATGAAGAATAA+AGG - chr1_2:61315201-61315220 None:intergenic 35.0%
GCACTTGTATGAAGAAAAAG+AGG - chr1_2:61315245-61315264 None:intergenic 35.0%
GAGATGTGTCAATAAGGAAA+AGG + chr1_2:61315356-61315375 Msa0082470:CDS 35.0%
TGTCAATAAGGAAAAGGAAG+AGG + chr1_2:61315362-61315381 Msa0082470:CDS 35.0%
ACATCATCATAGTAGTGAGA+AGG - chr1_2:61315405-61315424 None:intergenic 35.0%
AGTTTGTGCAATAAGTGCAT+TGG - chr1_2:61315591-61315610 None:intergenic 35.0%
!!! ACTATTTTAAGACCCCTGTT+TGG - chr1_2:61315858-61315877 None:intergenic 35.0%
TAGGGATGAATTGACACTAT+TGG - chr1_2:61315883-61315902 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr1_2:61316030-61316049 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr1_2:61316031-61316050 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr1_2:61316044-61316063 None:intergenic 35.0%
!! ACGTTGTAGCTTGTTGAAAT+TGG + chr1_2:61316314-61316333 Msa0082470:intron 35.0%
!! CGTTGTAGCTTGTTGAAATT+GGG + chr1_2:61316315-61316334 Msa0082470:intron 35.0%
GTATAAGCACACTACCTAAT+TGG - chr1_2:61316501-61316520 None:intergenic 35.0%
TGTGCTTATACAAACAACCT+TGG + chr1_2:61316510-61316529 Msa0082470:intron 35.0%
TCTCTAAACATATTCTGCCA+AGG - chr1_2:61316530-61316549 None:intergenic 35.0%
ATTGTCATATCTTTGATGCC+TGG + chr1_2:61316557-61316576 Msa0082470:intron 35.0%
TGAAAATCAGAAATTGTGCC+AGG - chr1_2:61316578-61316597 None:intergenic 35.0%
! TGAGTGGACAATTTTCTTCT+TGG + chr1_2:61316615-61316634 Msa0082470:intron 35.0%
!! AACCTTCTCTAAGATAGGAA+TGG + chr1_2:61316749-61316768 Msa0082470:intron 35.0%
!! ATTGAAGAGTATCGTGAAGT+TGG + chr1_2:61316847-61316866 Msa0082470:CDS 35.0%
! GCTTTTCTAACATCTTCTTC+AGG - chr1_2:61316892-61316911 None:intergenic 35.0%
AGAAAAAGACTTGTACCATC+TGG - chr1_2:61317104-61317123 None:intergenic 35.0%
!! CTTACCATTTTTCAATGAGC+TGG + chr1_2:61317392-61317411 Msa0082470:intron 35.0%
TAACTCTTGGCAAATTCTTG+AGG + chr1_2:61317670-61317689 Msa0082470:intron 35.0%
! TATCATTTTGCGCATGTATG+AGG - chr1_2:61317736-61317755 None:intergenic 35.0%
AATGCCACAGCCAAATAATA+AGG + chr1_2:61317794-61317813 Msa0082470:intron 35.0%
! TCAGAGCTTGCCTTATTATT+TGG - chr1_2:61317807-61317826 None:intergenic 35.0%
!!! CTTTTTTTTTGGTGCAATGG+TGG - chr1_2:61317839-61317858 None:intergenic 35.0%
CACCATTGCACCAAAAAAAA+AGG + chr1_2:61317837-61317856 Msa0082470:intron 35.0%
!!! TGCCTTTTTTTTTGGTGCAA+TGG - chr1_2:61317842-61317861 None:intergenic 35.0%
ATTGCACCAAAAAAAAAGGC+AGG + chr1_2:61317841-61317860 Msa0082470:intron 35.0%
! GGTTAATGTTTTGTGCACTA+TGG - chr1_2:61317869-61317888 None:intergenic 35.0%
GAGATGCATATATAGAGTTG+AGG - chr1_2:61317905-61317924 None:intergenic 35.0%
TTACTAAGGAGTGAAGGATT+GGG - chr1_2:61317994-61318013 None:intergenic 35.0%
ATTACTAAGGAGTGAAGGAT+TGG - chr1_2:61317995-61318014 None:intergenic 35.0%
TTTGAATTATGCTGCTAGCT+TGG + chr1_2:61318104-61318123 Msa0082470:intron 35.0%
! GTTTGCTTTAGACACTACAA+TGG + chr1_2:61318184-61318203 Msa0082470:intron 35.0%
! GTCAAGTTTGCTTAGATTTC+AGG + chr1_2:61318251-61318270 Msa0082470:intron 35.0%
! TCTTCTTTGATGGTTACACT+TGG - chr1_2:61318496-61318515 None:intergenic 35.0%
ATGTAATCCTTCAACTTAGC+AGG + chr1_2:61318566-61318585 Msa0082470:intron 35.0%
!! TCTTTTACCTGCTAAGTTGA+AGG - chr1_2:61318576-61318595 None:intergenic 35.0%
! TTTTGAACCCATCAAATGTC+AGG + chr1_2:61318629-61318648 Msa0082470:intron 35.0%
CCGATATAGAAGGTTACAAA+AGG - chr1_2:61318753-61318772 None:intergenic 35.0%
CACCTATTTACAGGATGAAA+AGG + chr1_2:61318907-61318926 Msa0082470:intron 35.0%
AAAGGATGCTATAAGAAGTC+TGG + chr1_2:61318925-61318944 Msa0082470:CDS 35.0%
TCTGGATCTGTTATACAGAA+GGG + chr1_2:61318943-61318962 Msa0082470:CDS 35.0%
CTTAGTTGCTTGATATTTGC+TGG + chr1_2:61319059-61319078 Msa0082470:intron 35.0%
TGCAGTGAACACTTATATTC+TGG - chr1_2:61319143-61319162 None:intergenic 35.0%
! ACTCTTTAGCAGCAGATTTT+TGG - chr1_2:61319169-61319188 None:intergenic 35.0%
!! ATGAAAGTTGATGCAAGCAA+AGG - chr1_2:61319305-61319324 None:intergenic 35.0%
GCTTGCATCAACTTTCATAT+TGG + chr1_2:61319307-61319326 Msa0082470:intron 35.0%
TCATGATTGATACATTCCCA+AGG + chr1_2:61319573-61319592 Msa0082470:CDS 35.0%
CATGATTGATACATTCCCAA+GGG + chr1_2:61319574-61319593 Msa0082470:CDS 35.0%
ATCAAATGACTCAAATCCAG+GGG - chr1_2:61319624-61319643 None:intergenic 35.0%
GATACCGTAGTTTGACATTA+TGG + chr1_2:61319680-61319699 Msa0082470:intron 35.0%
GTTTGACATTATGGTTGAAG+TGG + chr1_2:61319689-61319708 Msa0082470:intron 35.0%
! TCTTGTTTGTATCAGCATCA+CGG + chr1_2:61320024-61320043 Msa0082470:intron 35.0%
!! TTATCATCGACTTCAAGTGA+TGG - chr1_2:61320060-61320079 None:intergenic 35.0%
AATCTAGTAGAGCTTCTACT+TGG - chr1_2:61320233-61320252 None:intergenic 35.0%
AGTAGAAGCTCTACTAGATT+TGG + chr1_2:61320233-61320252 Msa0082470:CDS 35.0%
! ATTTGGCCATTAGTTTGAAC+TGG + chr1_2:61320250-61320269 Msa0082470:CDS 35.0%
TAGCTACCAGTTCAAACTAA+TGG - chr1_2:61320259-61320278 None:intergenic 35.0%
AAAATACAGGACCATCCATT+TGG - chr1_2:61320544-61320563 None:intergenic 35.0%
!!! GGTCCTGTATTTTTAGTGTT+TGG + chr1_2:61320551-61320570 Msa0082470:three_prime_UTR 35.0%
CACAGCAGATATATTCGTAC+CGG - chr1_2:61315030-61315049 None:intergenic 40.0%
GAAAAAGAGGGATATGGAGA+AGG - chr1_2:61315232-61315251 None:intergenic 40.0%
AAGCACTTGTGAAACCAATC+AGG + chr1_2:61315694-61315713 Msa0082470:intron 40.0%
TGATATGCGCTTATCCAAAC+AGG + chr1_2:61315841-61315860 Msa0082470:intron 40.0%
GATATGCGCTTATCCAAACA+GGG + chr1_2:61315842-61315861 Msa0082470:intron 40.0%
ATATGCGCTTATCCAAACAG+GGG + chr1_2:61315843-61315862 Msa0082470:intron 40.0%
ATAGGGACTGAAAATGCTGA+TGG + chr1_2:61316083-61316102 Msa0082470:intron 40.0%
!! TAGCTTGTTGAAATTGGGTG+AGG + chr1_2:61316320-61316339 Msa0082470:intron 40.0%
ATGGTCCTATCTATCCAATG+TGG + chr1_2:61316371-61316390 Msa0082470:intron 40.0%
TGGTCCTATCTATCCAATGT+GGG + chr1_2:61316372-61316391 Msa0082470:intron 40.0%
AAGTCCCACATTGGATAGAT+AGG - chr1_2:61316379-61316398 None:intergenic 40.0%
TATCTATCCAATGTGGGACT+TGG + chr1_2:61316378-61316397 Msa0082470:intron 40.0%
ATCTATCCAATGTGGGACTT+GGG + chr1_2:61316379-61316398 Msa0082470:intron 40.0%
ACCATTTATATACACGCACC+AGG - chr1_2:61316443-61316462 None:intergenic 40.0%
TGGTGCGTGTATATAAATGG+TGG + chr1_2:61316442-61316461 Msa0082470:intron 40.0%
GCGTGTATATAAATGGTGGT+TGG + chr1_2:61316446-61316465 Msa0082470:intron 40.0%
TACGGTATCAATGTGTCTCT+TGG + chr1_2:61316664-61316683 Msa0082470:intron 40.0%
TGCCATTCCTATCTTAGAGA+AGG - chr1_2:61316754-61316773 None:intergenic 40.0%
AAGTAGAAGAGGTGATGTCT+TGG + chr1_2:61316950-61316969 Msa0082470:intron 40.0%
!!! CAGTTTTTTTGTAGGGACAC+TGG + chr1_2:61317156-61317175 Msa0082470:intron 40.0%
AGGACCAGCTCATTGAAAAA+TGG - chr1_2:61317399-61317418 None:intergenic 40.0%
GTCCTTTGACTGTCAATCTT+CGG + chr1_2:61317414-61317433 Msa0082470:intron 40.0%
AACCGAAGATTGACAGTCAA+AGG - chr1_2:61317419-61317438 None:intergenic 40.0%
ACTCAAGAGTTTGACAAGCA+TGG - chr1_2:61317529-61317548 None:intergenic 40.0%
TTGGCAAATTCTTGAGGTTG+AGG + chr1_2:61317676-61317695 Msa0082470:intron 40.0%
! CTTGCCTTATTATTTGGCTG+TGG - chr1_2:61317801-61317820 None:intergenic 40.0%
!!! ATGGAGCCTGCCTTTTTTTT+TGG - chr1_2:61317850-61317869 None:intergenic 40.0%
CAACATGAATCCATCTGCAA+AGG + chr1_2:61317933-61317952 Msa0082470:intron 40.0%
TACTAAGGAGTGAAGGATTG+GGG - chr1_2:61317993-61318012 None:intergenic 40.0%
! AGCAAACTTGACTCGTAAAC+TGG - chr1_2:61318243-61318262 None:intergenic 40.0%
CTCGAGTTTGACAATCATGA+CGG + chr1_2:61318288-61318307 Msa0082470:intron 40.0%
GTCTTTGTGAAGTAGAACTG+TGG + chr1_2:61318312-61318331 Msa0082470:intron 40.0%
ATGGAGTCCCCTATGAATTT+AGG - chr1_2:61318354-61318373 None:intergenic 40.0%
CAACTTAGCAGGTAAAAGAG+TGG + chr1_2:61318577-61318596 Msa0082470:intron 40.0%
! TAGTTGGCCTGACATTTGAT+GGG - chr1_2:61318639-61318658 None:intergenic 40.0%
! ATAGTTGGCCTGACATTTGA+TGG - chr1_2:61318640-61318659 None:intergenic 40.0%
TGACAGCTTGACTACAAACT+CGG - chr1_2:61318672-61318691 None:intergenic 40.0%
AACAAGATGGTCAGAGAAAG+AGG - chr1_2:61318875-61318894 None:intergenic 40.0%
GTCTGGATCTGTTATACAGA+AGG + chr1_2:61318942-61318961 Msa0082470:CDS 40.0%
TCTGTTATACAGAAGGGTTG+AGG + chr1_2:61318949-61318968 Msa0082470:CDS 40.0%
TACGGCTCAACACACTTTAA+TGG + chr1_2:61319029-61319048 Msa0082470:intron 40.0%
! GTTGATGCAAGCAAAGGTAT+GGG - chr1_2:61319299-61319318 None:intergenic 40.0%
! AGTTGATGCAAGCAAAGGTA+TGG - chr1_2:61319300-61319319 None:intergenic 40.0%
ATTGAGTAATCTCATCGCAG+GGG - chr1_2:61319492-61319511 None:intergenic 40.0%
CATTGAGTAATCTCATCGCA+GGG - chr1_2:61319493-61319512 None:intergenic 40.0%
TCATTGAGTAATCTCATCGC+AGG - chr1_2:61319494-61319513 None:intergenic 40.0%
TCAAATGACTCAAATCCAGG+GGG - chr1_2:61319623-61319642 None:intergenic 40.0%
CTTGTTTGTATCAGCATCAC+GGG + chr1_2:61320025-61320044 Msa0082470:intron 40.0%
!! GAGGATTGATTTTGTAAGGG+AGG + chr1_2:61320089-61320108 Msa0082470:CDS 40.0%
ATGAATTGCTGCAAGACGTT+CGG + chr1_2:61320115-61320134 Msa0082470:CDS 40.0%
TTAGGGTGATGAGAATCTCT+TGG + chr1_2:61320441-61320460 Msa0082470:three_prime_UTR 40.0%
TAGGGTGATGAGAATCTCTT+GGG + chr1_2:61320442-61320461 Msa0082470:three_prime_UTR 40.0%
ACATCTACCGTCTATCCAAA+TGG + chr1_2:61320526-61320545 Msa0082470:three_prime_UTR 40.0%
! CTGACACAGGGTTTAAGACA+CGG - chr1_2:61315054-61315073 None:intergenic 45.0%
AAAGAAAGAGAGAGAGGTGG+AGG - chr1_2:61315176-61315195 None:intergenic 45.0%
AAGGGGAAAGAAAGAGAGAG+AGG - chr1_2:61315182-61315201 None:intergenic 45.0%
!! AGAAGGTGTTGTGGCAACAA+GGG - chr1_2:61315215-61315234 None:intergenic 45.0%
AAGCTACGGAAACTAACCTG+GGG - chr1_2:61315275-61315294 None:intergenic 45.0%
GAAGCTACGGAAACTAACCT+GGG - chr1_2:61315276-61315295 None:intergenic 45.0%
AGAAGCTACGGAAACTAACC+TGG - chr1_2:61315277-61315296 None:intergenic 45.0%
!! AAGGAAGAGGTGCTTCTAGA+AGG + chr1_2:61315375-61315394 Msa0082470:CDS 45.0%
!! AGGAAGAGGTGCTTCTAGAA+GGG + chr1_2:61315376-61315395 Msa0082470:CDS 45.0%
AAATGTTAACTAGTGCCCCC+GGG - chr1_2:61315652-61315671 None:intergenic 45.0%
GAAATGTTAACTAGTGCCCC+CGG - chr1_2:61315653-61315672 None:intergenic 45.0%
GCCTGGTGCGTGTATATAAA+TGG + chr1_2:61316439-61316458 Msa0082470:intron 45.0%
TAAGATAGGAATGGCAAGCC+CGG + chr1_2:61316758-61316777 Msa0082470:intron 45.0%
AGTATCGTGAAGTTGGCATG+CGG + chr1_2:61316854-61316873 Msa0082470:CDS 45.0%
CACCTCTTCTACTTCTTCAG+CGG - chr1_2:61316944-61316963 None:intergenic 45.0%
AGTTGAGGGTTACAGCTATG+AGG - chr1_2:61317890-61317909 None:intergenic 45.0%
CATGAATCCATCTGCAAAGG+AGG + chr1_2:61317936-61317955 Msa0082470:intron 45.0%
TCGTTTACCTCCTTTGCAGA+TGG - chr1_2:61317946-61317965 None:intergenic 45.0%
ACTAAGGAGTGAAGGATTGG+GGG - chr1_2:61317992-61318011 None:intergenic 45.0%
! ATTATGCTGCTAGCTTGGTC+TGG + chr1_2:61318109-61318128 Msa0082470:intron 45.0%
! TTGACTCGTAAACTGGCAAG+AGG - chr1_2:61318236-61318255 None:intergenic 45.0%
AAAGTGTGTTGAGCCGTAGA+GGG - chr1_2:61319027-61319046 None:intergenic 45.0%
TAAAGTGTGTTGAGCCGTAG+AGG - chr1_2:61319028-61319047 None:intergenic 45.0%
! GCAAAGGTATGGGAAGGAAA+AGG - chr1_2:61319289-61319308 None:intergenic 45.0%
! ATGCAAGCAAAGGTATGGGA+AGG - chr1_2:61319295-61319314 None:intergenic 45.0%
GACTGAGATCTTGAAACGAG+AGG + chr1_2:61319463-61319482 Msa0082470:intron 45.0%
GATTGATACATTCCCAAGGG+AGG + chr1_2:61319577-61319596 Msa0082470:CDS 45.0%
TGCTATATGGATCCTCCCTT+GGG - chr1_2:61319592-61319611 None:intergenic 45.0%
ATGCTATATGGATCCTCCCT+TGG - chr1_2:61319593-61319612 None:intergenic 45.0%
GGGGGAACAAGAATGCTATA+TGG - chr1_2:61319605-61319624 None:intergenic 45.0%
TATAGCATTCTTGTTCCCCC+TGG + chr1_2:61319605-61319624 Msa0082470:CDS 45.0%
ACTTCAAGTGATGGTCGCAA+TGG - chr1_2:61320051-61320070 None:intergenic 45.0%
TTGCAGTCCAAGTAGCTTCA+CGG + chr1_2:61320368-61320387 Msa0082470:three_prime_UTR 45.0%
ATACAACCCGTGAAGCTACT+TGG - chr1_2:61320378-61320397 None:intergenic 45.0%
CTACCGTCTATCCAAATGGA+TGG + chr1_2:61320530-61320549 Msa0082470:three_prime_UTR 45.0%
GGACCATCCATTTGGATAGA+CGG - chr1_2:61320536-61320555 None:intergenic 45.0%
!!! CATATTTTTATTTTTTTATA+AGG + chr1_2:61317769-61317788 Msa0082470:intron 5.0%
AGAGAGAGAGGTGGAGGTTA+GGG - chr1_2:61315170-61315189 None:intergenic 50.0%
AAGAGAGAGAGGTGGAGGTT+AGG - chr1_2:61315171-61315190 None:intergenic 50.0%
GGGAAAGAAAGAGAGAGAGG+TGG - chr1_2:61315179-61315198 None:intergenic 50.0%
!! GAGAAGGTGTTGTGGCAACA+AGG - chr1_2:61315216-61315235 None:intergenic 50.0%
!! GGGATATGGAGAAGGTGTTG+TGG - chr1_2:61315224-61315243 None:intergenic 50.0%
!! AGCATGCTTAAAGAGTGCCC+CGG - chr1_2:61315525-61315544 None:intergenic 50.0%
AATGTTAACTAGTGCCCCCG+GGG - chr1_2:61315651-61315670 None:intergenic 50.0%
GGAAAACCCAAGTCCCACAT+TGG - chr1_2:61316388-61316407 None:intergenic 50.0%
!! CTTGGTCTTTTCACGTTGCC+GGG - chr1_2:61316779-61316798 None:intergenic 50.0%
!! CCTTGGTCTTTTCACGTTGC+CGG - chr1_2:61316780-61316799 None:intergenic 50.0%
AAGACGCAGAGAGGAAGAAG+AGG + chr1_2:61316810-61316829 Msa0082470:CDS 50.0%
AGCCGCTGAAGAAGTAGAAG+AGG + chr1_2:61316939-61316958 Msa0082470:CDS 50.0%
ATTGAGGAAGCTGCTGAGAG+AGG + chr1_2:61317229-61317248 Msa0082470:CDS 50.0%
GGAATCGCCTTGATCTTGCT+CGG + chr1_2:61317284-61317303 Msa0082470:CDS 50.0%
TCACACGAGCTTACAACCTC+AGG + chr1_2:61317603-61317622 Msa0082470:intron 50.0%
TTTCTTGGTTCCCCCCTCTA+CGG + chr1_2:61319011-61319030 Msa0082470:intron 50.0%
AAGTGTGTTGAGCCGTAGAG+GGG - chr1_2:61319026-61319045 None:intergenic 50.0%
ATTGCTGCAAGACGTTCGGT+CGG + chr1_2:61320119-61320138 Msa0082470:CDS 50.0%
TGCAGTCCAAGTAGCTTCAC+GGG + chr1_2:61320369-61320388 Msa0082470:three_prime_UTR 50.0%
TACAAGTGCACATCCACCCC+AGG + chr1_2:61315256-61315275 Msa0082470:CDS 55.0%
CTACGGAAACTAACCTGGGG+TGG - chr1_2:61315272-61315291 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr1_2:61315503-61315522 Msa0082470:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr1_2:61315504-61315523 Msa0082470:intron 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG - chr1_2:61315522-61315541 None:intergenic 55.0%
!! CATGCTTAAAGAGTGCCCCG+GGG - chr1_2:61315523-61315542 None:intergenic 55.0%
!! GCATGCTTAAAGAGTGCCCC+GGG - chr1_2:61315524-61315543 None:intergenic 55.0%
ATGGTCCTTAACCAGTGCCC+CGG + chr1_2:61315631-61315650 Msa0082470:intron 55.0%
! CAATAGTGTTGGGCGTGAGG+GGG - chr1_2:61316418-61316437 None:intergenic 55.0%
! CCAATAGTGTTGGGCGTGAG+GGG - chr1_2:61316419-61316438 None:intergenic 55.0%
! CCCAATAGTGTTGGGCGTGA+GGG - chr1_2:61316420-61316439 None:intergenic 55.0%
CCCTCACGCCCAACACTATT+GGG + chr1_2:61316417-61316436 Msa0082470:intron 55.0%
GCACCAGGCCCAATAGTGTT+GGG - chr1_2:61316428-61316447 None:intergenic 55.0%
! TGGTGGTTGGTGCGATCGAT+AGG + chr1_2:61316459-61316478 Msa0082470:intron 55.0%
CCGGCAACGTGAAAAGACCA+AGG + chr1_2:61316777-61316796 Msa0082470:CDS 55.0%
GCGTCTTCGATGCAACTCCT+TGG - chr1_2:61316797-61316816 None:intergenic 55.0%
GTTGCATCGAAGACGCAGAG+AGG + chr1_2:61316801-61316820 Msa0082470:CDS 55.0%
TGAAGTTGGCATGCGGCTGA+AGG + chr1_2:61316861-61316880 Msa0082470:CDS 55.0%
CATCACGCCGAGCAAGATCA+AGG - chr1_2:61317294-61317313 None:intergenic 55.0%
!! TAAGGCAAGCTCTGAGCCAC+TGG + chr1_2:61317812-61317831 Msa0082470:intron 55.0%
! CTGCTAGCTTGGTCTGGTCT+GGG + chr1_2:61318115-61318134 Msa0082470:intron 55.0%
AGTGTGTTGAGCCGTAGAGG+GGG - chr1_2:61319025-61319044 None:intergenic 55.0%
GAGAGGTGGAGGTTAGGGAG+AGG - chr1_2:61315165-61315184 None:intergenic 60.0%
CTTGTTAACGAGTGCCCCCG+GGG + chr1_2:61315505-61315524 Msa0082470:intron 60.0%
TGGTCCTTAACCAGTGCCCC+GGG + chr1_2:61315632-61315651 Msa0082470:intron 60.0%
! TGGGCGTGAGGGGGTGTATT+GGG - chr1_2:61316409-61316428 None:intergenic 60.0%
! TTGGGCGTGAGGGGGTGTAT+TGG - chr1_2:61316410-61316429 None:intergenic 60.0%
CCCCTCACGCCCAACACTAT+TGG + chr1_2:61316416-61316435 Msa0082470:intron 60.0%
! GCCCAATAGTGTTGGGCGTG+AGG - chr1_2:61316421-61316440 None:intergenic 60.0%
ACGCCCAACACTATTGGGCC+TGG + chr1_2:61316422-61316441 Msa0082470:intron 60.0%
CGCACCAGGCCCAATAGTGT+TGG - chr1_2:61316429-61316448 None:intergenic 60.0%
!! TTGGTGCAATGGTGGGCCAG+TGG - chr1_2:61317831-61317850 None:intergenic 60.0%
! GCTGCTAGCTTGGTCTGGTC+TGG + chr1_2:61318114-61318133 Msa0082470:intron 60.0%
GTGTGTTGAGCCGTAGAGGG+GGG - chr1_2:61319024-61319043 None:intergenic 60.0%
GCAAGACGTTCGGTCGGAAC+AGG + chr1_2:61320125-61320144 Msa0082470:CDS 60.0%
GGTCCTTAACCAGTGCCCCG+GGG + chr1_2:61315633-61315652 Msa0082470:intron 65.0%
GTCCTTAACCAGTGCCCCGG+GGG + chr1_2:61315634-61315653 Msa0082470:intron 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr1_2:61315639-61315658 None:intergenic 70.0%
AACTAGTGCCCCCGGGGCAC+TGG - chr1_2:61315645-61315664 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 61315002 61320638 61315002 ID=Msa0082470;Name=Msa0082470
chr1_2 mRNA 61315002 61320638 61315002 ID=Msa0082470-mRNA-1;Parent=Msa0082470;Name=Msa0082470-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152|1|1|1|1|1|7|363|318
chr1_2 exon 61315002 61315277 61315002 ID=Msa0082470-mRNA-1:exon:20241;Parent=Msa0082470-mRNA-1
chr1_2 exon 61315349 61315422 61315349 ID=Msa0082470-mRNA-1:exon:20242;Parent=Msa0082470-mRNA-1
chr1_2 exon 61316766 61316960 61316766 ID=Msa0082470-mRNA-1:exon:20243;Parent=Msa0082470-mRNA-1
chr1_2 exon 61317226 61317312 61317226 ID=Msa0082470-mRNA-1:exon:20244;Parent=Msa0082470-mRNA-1
chr1_2 exon 61318920 61318970 61318920 ID=Msa0082470-mRNA-1:exon:20245;Parent=Msa0082470-mRNA-1
chr1_2 exon 61319464 61319652 61319464 ID=Msa0082470-mRNA-1:exon:20246;Parent=Msa0082470-mRNA-1
chr1_2 exon 61320039 61320638 61320039 ID=Msa0082470-mRNA-1:exon:20247;Parent=Msa0082470-mRNA-1
chr1_2 five_prime_UTR 61315002 61315153 61315002 ID=Msa0082470-mRNA-1:five_prime_utr;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61315154 61315277 61315154 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61315349 61315422 61315349 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61316766 61316960 61316766 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61317226 61317312 61317226 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61318920 61318970 61318920 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61319464 61319652 61319464 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 CDS 61320039 61320275 61320039 ID=Msa0082470-mRNA-1:cds;Parent=Msa0082470-mRNA-1
chr1_2 three_prime_UTR 61320276 61320638 61320276 ID=Msa0082470-mRNA-1:three_prime_utr;Parent=Msa0082470-mRNA-1
Gene Sequence

>Msa0082470

ATGAATTTCCTCTCCCTAACCTCCACCTCTCTCTCTTTCTTTCCCCTTTATTCTTCATCCCTTGTTGCCACAACACCTTCTCCATATCCCTCTTTTTCTTCATACAAGTGCACATCCACCCCAGTTTTAAGGAGATGTGTCAATAAGGAAAAGGAAGAGGTGCTTCTAGAAGGGATGCCTTCTCACTACTATGATGATGAATGGCAAGCCCGGCAACGTGAAAAGACCAAGGAGTTGCATCGAAGACGCAGAGAGGAAGAAGAGGAAGAAGAGAGAAAGATTGAAGAGTATCGTGAAGTTGGCATGCGGCTGAAGGAATACCCTGAAGAAGATGTTAGAAAAGCAAGGAAATTGATTTCAAGCTTCATAAGAGCCGCTGAAGAAGTAGAAGAGAAAATTGAGGAAGCTGCTGAGAGAGGAGAACTTACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGATCTTGCTCGGCGTGATGATGAAAAGGATGCTATAAGAAGTCTGGATCTGTTATACAGAAGGGTTGAGACTGAGATCTTGAAACGAGAGGCTACCCCTGCGATGAGATTACTCAATGATCTTTTGATTATGTACGATGGCTTTAATTTTGATGAGTGGCTAAAGAATTGTAAAAAGATCATGATTGATACATTCCCAAGGGAGGATCCATATAGCATTCTTGTTCCCCCTGGATTTGAGTCATTTGATATAGATCAACATCACGGGCCATTGCGACCATCACTTGAAGTCGATGATAATACTCTTTTGAGGATTGATTTTGTAAGGGAGGTTGATGAATTGCTGCAAGACGTTCGGTCGGAACAGGATGAAGAAGAGAATGAACAAGAGCTTAATGCTGAATCAGTTGCTAATATATTAAAACAGCAGGAGAAGCAGCAAACAATACGCCAAGTAGAAGCTCTACTAGATTTGGCCATTAGTTTGAACTGGTAG
Protein sequence

>Msa0082470

MNFLSLTSTSLSFFPLYSSSLVATTPSPYPSFSSYKCTSTPVLRRCVNKEKEEVLLEGMPSHYYDDEWQARQREKTKELHRRRREEEEEEERKIEEYREVGMRLKEYPEEDVRKARKLISSFIRAAEEVEEKIEEAAERGELTELVLMVIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKREATPAMRLLNDLLIMYDGFNFDEWLKNCKKIMIDTFPREDPYSILVPPGFESFDIDQHHGPLRPSLEVDDNTLLRIDFVREVDELLQDVRSEQDEEENEQELNAESVANILKQQEKQQTIRQVEALLDLAISLNW*