AlfalfaGEDB | Msa0169170

M. sativa cultivar zhongmu-4 / Msa0169170

KEGG: K10523
GO: GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169170	XP_003590693.1	99.760	417	1	0	1	417	1	417	0.0	868

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169170	sp\|Q9M8J9\|BPM2_ARATH	72.616	409	108	1	7	415	2	406	0.0	626

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169170	G7I2K6	99.760	417	1	0	1	417	1	417	0.0	868

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0124640	Msa0169170	0.812239	4.685887e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169170	MtrunA17_Chr1g0185861	99.760	417	1	0	1	417	1	417	0.0	868
Msa0169170	MtrunA17_Chr7g0259501	88.647	414	43	1	1	414	1	410	0.0	732
Msa0169170	MtrunA17_Chr5g0440341	57.545	391	149	6	33	413	23	406	7.91e-155	443
Msa0169170	MtrunA17_Chr7g0254001	56.883	385	158	4	36	415	13	394	1.15e-144	418
Msa0169170	MtrunA17_Chr4g0002921	60.335	179	71	0	39	217	23	201	7.43e-71	227
Msa0169170	MtrunA17_Chr3g0112351	59.140	93	38	0	262	354	6	98	5.22e-32	117
Msa0169170	MtrunA17_Chr1g0205751	31.098	164	89	4	191	348	519	664	1.65e-15	78.6
Msa0169170	MtrunA17_Chr5g0394261	30.435	161	94	3	191	348	516	661	2.50e-14	75.1
Msa0169170	MtrunA17_Chr7g0259851	28.395	162	96	4	191	348	506	651	1.38e-13	72.8
Msa0169170	MtrunA17_Chr3g0125321	27.568	185	113	5	205	383	74	243	1.18e-12	67.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169170	AT3G06190.1	72.616	409	108	1	7	415	2	406	0.0	626
Msa0169170	AT5G19000.1	72.872	376	102	0	40	415	32	407	0.0	593
Msa0169170	AT5G19000.3	72.872	376	102	0	40	415	32	407	0.0	593
Msa0169170	AT5G19000.2	66.667	411	102	1	40	415	32	442	0.0	577
Msa0169170	AT3G06190.5	72.857	350	91	1	7	356	2	347	0.0	540
Msa0169170	AT2G39760.1	60.674	356	139	1	27	382	11	365	1.84e-164	468
Msa0169170	AT3G03740.1	60.548	365	133	4	22	382	31	388	4.39e-153	441
Msa0169170	AT2G39760.4	60.976	328	127	1	27	354	11	337	4.67e-151	432
Msa0169170	AT2G39760.3	60.976	328	127	1	27	354	11	337	4.67e-151	432
Msa0169170	AT2G39760.2	60.976	328	127	1	27	354	11	337	6.98e-151	431

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Find 126 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAGTCAAAACAGA+TGG	0.526627	1_4:+52297265	None:intergenic
AAAATGGGCAACTACCTTGA+TGG	0.450276	1_4:-52297962	Msa0169170:CDS
AAACCCGATCTGTGGGAATT+GGG	0.422740	1_4:+52300452	None:intergenic
AAAGCTCAGTCAAAACAGAT+GGG	0.629546	1_4:+52297266	None:intergenic
AACAGGGTTCTCTGGAGACC+TGG	0.530076	1_4:+52297118	None:intergenic
AACATGTTTGGTGGTGTTGC+AGG	0.335857	1_4:-52296981	Msa0169170:three_prime_UTR
AACTGGTGACCAATAGTAGA+AGG	0.481007	1_4:+52299103	None:intergenic
AAGATGGAAATTCTAGGGTT+TGG	0.343948	1_4:+52300537	None:intergenic
AATATAGGGGAATTTGAAGA+TGG	0.524378	1_4:+52300521	None:intergenic
AATCTTTATCGAGAAAAGGT+GGG	0.605946	1_4:+52300485	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAAGAAAATCTATGGA+TGG	+	chr1_4:52296942-52296961	None:intergenic	30.0%
AATATAGGGGAATTTGAAGA+TGG	+	chr1_4:52297009-52297028	None:intergenic	30.0%
AATCTTTATCGAGAAAAGGT+GGG	+	chr1_4:52297045-52297064	None:intergenic	30.0%
TGAGAATCTTTATCGAGAAA+AGG	+	chr1_4:52297049-52297068	None:intergenic	30.0%
TGATTCTAATTCCTTATCGA+GGG	-	chr1_4:52297664-52297683	Msa0169170:intron	30.0%
TTACATACTTATGCTTCTGT+GGG	-	chr1_4:52297816-52297835	Msa0169170:CDS	30.0%
TTCTGAACATTGTTGGAAAA+GGG	-	chr1_4:52297921-52297940	Msa0169170:CDS	30.0%
ATAGTCTAACTTCAAAACCA+AGG	+	chr1_4:52298074-52298093	None:intergenic	30.0%
CACTAAGACAGTTATCTTTA+AGG	+	chr1_4:52298336-52298355	None:intergenic	30.0%
TTGGAATCGAAAATGTTCTA+GGG	+	chr1_4:52298399-52298418	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	52296871	52300678	52296871	ID=Msa0169170;Name=Msa0169170
chr1_4	mRNA	52296871	52300678	52296871	ID=Msa0169170-mRNA-1;Parent=Msa0169170;Name=Msa0169170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=284\|1\|1\|1\|1\|1\|4\|270\|418
chr1_4	exon	52296871	52297331	52296871	ID=Msa0169170-mRNA-1:exon:15506;Parent=Msa0169170-mRNA-1
chr1_4	exon	52297773	52298049	52297773	ID=Msa0169170-mRNA-1:exon:15505;Parent=Msa0169170-mRNA-1
chr1_4	exon	52298916	52299264	52298916	ID=Msa0169170-mRNA-1:exon:15504;Parent=Msa0169170-mRNA-1
chr1_4	exon	52299955	52300678	52299955	ID=Msa0169170-mRNA-1:exon:15503;Parent=Msa0169170-mRNA-1
chr1_4	five_prime_UTR	52300395	52300678	52300395	ID=Msa0169170-mRNA-1:five_prime_utr;Parent=Msa0169170-mRNA-1
chr1_4	CDS	52299955	52300394	52299955	ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4	CDS	52298916	52299264	52298916	ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4	CDS	52297773	52298049	52297773	ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4	CDS	52297141	52297331	52297141	ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4	three_prime_UTR	52296871	52297140	52296871	ID=Msa0169170-mRNA-1:three_prime_utr;Parent=Msa0169170-mRNA-1

Gene Sequence

>Msa0169170

ATGGGTAAGATTCTTCGAGAAACAACGAGGCCATCCTCAAATTCATCATCATCATCTTCATCACCATCACCACCCTCAATTCCATCAACAACCTCCTCAACATCGATAACCGACACCATCAAAGGCTCACATAGGTTCAAGATAACGGGGTATTCACTCTCAAAAGGGATTGGAATTGGGAAATACATAGCATCTGAGATTTTCACCGTTGGTGGGTACGAATGGGCGATTTATTTTTACCCTGATGGGAAAAGCGTGGAGGATAATGCTACGTATGTGTCGCTTTTCATCGCGCTTGCGAGTGAAGGGACTGATGTTAGGGCGCTTTTTGAATTAACGCTTTTGGATCAGAGTGGGAAAGAGAGGCATAAGGTTCATAGTCATTTTGATAGGACGTTGGAGAGTGGACCTTATACGTTGAAATATCGTGGTAGCATGTGGGGATACAAGAGATTTTTTAAGAGAACGTCATTAGAGACTTCAGATTACCTTAAAGATAACTGTCTTAGTGTTAATTGTAGCGTTGGTGTTGTGAGGTCACACACAGAGGGCCCTAGAACATTTTCGATTCCAATATCACCTTCTACTATTGGTCACCAGTTTGGGAAGCTTTTGGAAAGTGGAAAAAGCAGCGATGTGAATTTTGAAGTGAATGGTGAAATTTTTGCGGCTCATAAATTGGTACTAGCAGCTCGATCACCTGTTTTTAGAGCTCAGCTTTTTGGTCCTATGAAAGATCAGAACACACAGTGTATAAAAGTTGAAGATATCGAGGCTCCTGTTTTCAAGGCATTGCTGCATGTTATATATTGGGACTCGCTGCCTGACATGCAAGAGCTTACTGGGATTAACTCAAAATGGGCAACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGCCTTAGATAGACTTAGGCTGATGTGTGAAGCAAGTCTATGTGAAGATGTTGCAATAAATACCGTGGCTACAACTTTAGCTTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAAGCAGTCTGTTTGAAATTCATTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTCGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCCTGTGCAAGCATAGGAACGAAGCAATACTTGATGGCAGTGATGTAAATGGAAGGCGGGTGAAGCAAAGACTATACTGTGAAAAATGA

Protein sequence

>Msa0169170

MGKILRETTRPSSNSSSSSSSPSPPSIPSTTSSTSITDTIKGSHRFKITGYSLSKGIGIGKYIASEIFTVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFDRTLESGPYTLKYRGSMWGYKRFFKRTSLETSDYLKDNCLSVNCSVGVVRSHTEGPRTFSIPISPSTIGHQFGKLLESGKSSDVNFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDIEAPVFKALLHVIYWDSLPDMQELTGINSKWATTLMAQHLLAAADRYALDRLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNEAILDGSDVNGRRVKQRLYCEK*