Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169170 | XP_003590693.1 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169170 | sp|Q9M8J9|BPM2_ARATH | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169170 | G7I2K6 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0124640 | Msa0169170 | 0.812239 | 4.685887e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169170 | MtrunA17_Chr1g0185861 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| Msa0169170 | MtrunA17_Chr7g0259501 | 88.647 | 414 | 43 | 1 | 1 | 414 | 1 | 410 | 0.0 | 732 |
| Msa0169170 | MtrunA17_Chr5g0440341 | 57.545 | 391 | 149 | 6 | 33 | 413 | 23 | 406 | 7.91e-155 | 443 |
| Msa0169170 | MtrunA17_Chr7g0254001 | 56.883 | 385 | 158 | 4 | 36 | 415 | 13 | 394 | 1.15e-144 | 418 |
| Msa0169170 | MtrunA17_Chr4g0002921 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 7.43e-71 | 227 |
| Msa0169170 | MtrunA17_Chr3g0112351 | 59.140 | 93 | 38 | 0 | 262 | 354 | 6 | 98 | 5.22e-32 | 117 |
| Msa0169170 | MtrunA17_Chr1g0205751 | 31.098 | 164 | 89 | 4 | 191 | 348 | 519 | 664 | 1.65e-15 | 78.6 |
| Msa0169170 | MtrunA17_Chr5g0394261 | 30.435 | 161 | 94 | 3 | 191 | 348 | 516 | 661 | 2.50e-14 | 75.1 |
| Msa0169170 | MtrunA17_Chr7g0259851 | 28.395 | 162 | 96 | 4 | 191 | 348 | 506 | 651 | 1.38e-13 | 72.8 |
| Msa0169170 | MtrunA17_Chr3g0125321 | 27.568 | 185 | 113 | 5 | 205 | 383 | 74 | 243 | 1.18e-12 | 67.8 |
| Msa0169170 | MtrunA17_Chr3g0103031 | 28.289 | 152 | 94 | 3 | 201 | 350 | 155 | 293 | 1.57e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169170 | AT3G06190.1 | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| Msa0169170 | AT5G19000.1 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| Msa0169170 | AT5G19000.3 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| Msa0169170 | AT5G19000.2 | 66.667 | 411 | 102 | 1 | 40 | 415 | 32 | 442 | 0.0 | 577 |
| Msa0169170 | AT3G06190.5 | 72.857 | 350 | 91 | 1 | 7 | 356 | 2 | 347 | 0.0 | 540 |
| Msa0169170 | AT2G39760.1 | 60.674 | 356 | 139 | 1 | 27 | 382 | 11 | 365 | 1.84e-164 | 468 |
| Msa0169170 | AT3G03740.1 | 60.548 | 365 | 133 | 4 | 22 | 382 | 31 | 388 | 4.39e-153 | 441 |
| Msa0169170 | AT2G39760.4 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.67e-151 | 432 |
| Msa0169170 | AT2G39760.3 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.67e-151 | 432 |
| Msa0169170 | AT2G39760.2 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 6.98e-151 | 431 |
| Msa0169170 | AT3G43700.1 | 53.171 | 410 | 176 | 7 | 16 | 413 | 8 | 413 | 8.11e-146 | 421 |
| Msa0169170 | AT5G21010.1 | 52.068 | 411 | 181 | 6 | 15 | 413 | 2 | 408 | 5.21e-142 | 411 |
| Msa0169170 | AT3G43700.2 | 55.807 | 353 | 143 | 6 | 16 | 359 | 8 | 356 | 3.06e-134 | 390 |
| Msa0169170 | AT3G43700.3 | 56.609 | 348 | 138 | 6 | 16 | 354 | 8 | 351 | 5.10e-134 | 389 |
| Msa0169170 | AT3G06190.3 | 65.529 | 293 | 90 | 3 | 7 | 292 | 2 | 290 | 2.55e-133 | 385 |
| Msa0169170 | AT3G06190.4 | 71.538 | 260 | 70 | 1 | 7 | 266 | 2 | 257 | 6.33e-133 | 384 |
| Msa0169170 | AT3G06190.2 | 70.866 | 254 | 70 | 1 | 7 | 260 | 2 | 251 | 2.33e-126 | 367 |
| Msa0169170 | AT3G06190.2 | 59.649 | 57 | 23 | 0 | 359 | 415 | 239 | 295 | 1.55e-13 | 71.2 |
| Msa0169170 | AT5G19330.1 | 29.193 | 161 | 96 | 3 | 191 | 348 | 521 | 666 | 7.60e-16 | 80.1 |
| Msa0169170 | AT5G13060.1 | 26.368 | 201 | 133 | 3 | 189 | 388 | 546 | 732 | 3.54e-14 | 75.1 |
Find 126 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAAGACAGTTATCTTTA+AGG | 0.101359 | 1_4:+52299194 | None:intergenic |
| ACCTTCTCGTGGCTCTCTTA+TGG | 0.177023 | 1_4:-52300391 | Msa0169170:exon |
| AGGTGAATTGGGGTGAAATT+AGG | 0.213084 | 1_4:+52300410 | None:intergenic |
| CATTGCTGCATGTTATATAT+TGG | 0.221491 | 1_4:-52298026 | Msa0169170:CDS |
| CTCTCAAAAGGGATTGGAAT+TGG | 0.250201 | 1_4:-52300216 | Msa0169170:CDS |
| CCTTCTCGTGGCTCTCTTAT+GGG | 0.253416 | 1_4:-52300390 | Msa0169170:exon |
| ATCGAGAAAAGGTGGGATTT+TGG | 0.261853 | 1_4:+52300492 | None:intergenic |
| TTACTGGGATTAACTCAAAA+TGG | 0.277584 | 1_4:-52297978 | Msa0169170:CDS |
| TCTACTATTGGTCACCAGTT+TGG | 0.278284 | 1_4:-52299100 | Msa0169170:CDS |
| TCACCAGTTTGGGAAGCTTT+TGG | 0.292881 | 1_4:-52299089 | Msa0169170:CDS |
| CAAACCCGATCTGTGGGAAT+TGG | 0.317482 | 1_4:+52300451 | None:intergenic |
| GAAATTCTAGGGTTTGGATT+TGG | 0.318479 | 1_4:+52300543 | None:intergenic |
| TCTATGGATGGTGGTGATAA+AGG | 0.322258 | 1_4:+52300600 | None:intergenic |
| CCTGACATGCAAGAGCTTAC+TGG | 0.322826 | 1_4:-52297994 | Msa0169170:CDS |
| CGAGTGAAGGGACTGATGTT+AGG | 0.326194 | 1_4:-52300074 | Msa0169170:CDS |
| CCAATATCACCTTCTACTAT+TGG | 0.326476 | 1_4:-52299112 | Msa0169170:CDS |
| CTACTATTGGTCACCAGTTT+GGG | 0.329635 | 1_4:-52299099 | Msa0169170:CDS |
| AACATGTTTGGTGGTGTTGC+AGG | 0.335857 | 1_4:-52296981 | Msa0169170:three_prime_UTR |
| AAGATGGAAATTCTAGGGTT+TGG | 0.343948 | 1_4:+52300537 | None:intergenic |
| GAACCTATGTGAGCCTTTGA+TGG | 0.352408 | 1_4:+52300257 | None:intergenic |
| CCACGATATTTCAACGTATA+AGG | 0.352677 | 1_4:+52299964 | None:intergenic |
| ATTGCTGCATGTTATATATT+GGG | 0.354568 | 1_4:-52298025 | Msa0169170:CDS |
| ATTGGAATCGAAAATGTTCT+AGG | 0.357925 | 1_4:+52299130 | None:intergenic |
| CATCAGCCTAAGTCTATCTA+AGG | 0.367304 | 1_4:+52297906 | None:intergenic |
| GGTGAATTGGGGTGAAATTA+GGG | 0.368343 | 1_4:+52300411 | None:intergenic |
| CTTGATGGCAGTGATGTAAA+TGG | 0.372844 | 1_4:-52297178 | Msa0169170:CDS |
| ATTATTTAAACCTTGAAAAC+AGG | 0.377554 | 1_4:+52298905 | None:intergenic |
| CCAATAGTAGAAGGTGATAT+TGG | 0.380995 | 1_4:+52299112 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 1_4:+52297994 | None:intergenic |
| TTTCCAAAAGCTTCCCAAAC+TGG | 0.384496 | 1_4:+52299086 | None:intergenic |
| GAGCCACGAGAAGGTGAATT+GGG | 0.389741 | 1_4:+52300399 | None:intergenic |
| TCACATAGGTTCAAGATAAC+GGG | 0.392891 | 1_4:-52300246 | Msa0169170:CDS |
| GTGAGTGGAACAGGGTTCTC+TGG | 0.404158 | 1_4:+52297110 | None:intergenic |
| CGTGGCTACAACTTTAGCTT+TGG | 0.416152 | 1_4:-52297845 | Msa0169170:CDS |
| AAACCCGATCTGTGGGAATT+GGG | 0.422740 | 1_4:+52300452 | None:intergenic |
| AGAGCCACGAGAAGGTGAAT+TGG | 0.423876 | 1_4:+52300398 | None:intergenic |
| AATTTGAAGATGGAAATTCT+AGG | 0.423952 | 1_4:+52300531 | None:intergenic |
| TCTCAAAAGGGATTGGAATT+GGG | 0.424168 | 1_4:-52300215 | Msa0169170:CDS |
| GATGTTGAGGAGGTTGTTGA+TGG | 0.428183 | 1_4:+52300291 | None:intergenic |
| GGGAGACGATCAACATTCAT+AGG | 0.432133 | 1_4:-52297057 | Msa0169170:three_prime_UTR |
| GGCTAGATTTACTGAGCATT+CGG | 0.434481 | 1_4:-52297233 | Msa0169170:CDS |
| CACCGTTGGTGGGTACGAAT+GGG | 0.437086 | 1_4:-52300169 | Msa0169170:CDS |
| TCACCGTTGGTGGGTACGAA+TGG | 0.438080 | 1_4:-52300170 | Msa0169170:CDS |
| ACGGGGTATTCACTCTCAAA+AGG | 0.441675 | 1_4:-52300228 | Msa0169170:CDS |
| TCAAACAGACTGCTTTCAGC+TGG | 0.445729 | 1_4:+52297803 | None:intergenic |
| TTCATCGCGCTTGCGAGTGA+AGG | 0.449539 | 1_4:-52300087 | Msa0169170:CDS |
| CTCACATAGGTTCAAGATAA+CGG | 0.449878 | 1_4:-52300247 | Msa0169170:CDS |
| AAAATGGGCAACTACCTTGA+TGG | 0.450276 | 1_4:-52297962 | Msa0169170:CDS |
| AGTTGATGTGTCACGCGCTA+TGG | 0.456519 | 1_4:+52300625 | None:intergenic |
| CTGACATGCAAGAGCTTACT+GGG | 0.457209 | 1_4:-52297993 | Msa0169170:CDS |
| TGATGGTTTCGAGTACTTGA+AGG | 0.459553 | 1_4:-52297296 | Msa0169170:CDS |
| TGTGTGTTCTGATCTTTCAT+AGG | 0.465282 | 1_4:+52298956 | None:intergenic |
| TTACAGTGAACCGTGGATAG+AGG | 0.466244 | 1_4:-52297078 | Msa0169170:three_prime_UTR |
| GATCCCAATTCCCACAGATC+GGG | 0.475040 | 1_4:-52300455 | Msa0169170:five_prime_UTR |
| AGATGTAAATGTAACATGTT+TGG | 0.478541 | 1_4:-52296993 | Msa0169170:three_prime_UTR |
| TATTCACTCTCAAAAGGGAT+TGG | 0.480986 | 1_4:-52300222 | Msa0169170:CDS |
| AACTGGTGACCAATAGTAGA+AGG | 0.481007 | 1_4:+52299103 | None:intergenic |
| GAGGTTGTTGATGGAATTGA+GGG | 0.492292 | 1_4:+52300300 | None:intergenic |
| ATTTGAAGATGGAAATTCTA+GGG | 0.505255 | 1_4:+52300532 | None:intergenic |
| GAGTGAAGGGACTGATGTTA+GGG | 0.509324 | 1_4:-52300073 | Msa0169170:CDS |
| CTTCGTTCCTATGCTTGCAC+AGG | 0.511010 | 1_4:+52297206 | None:intergenic |
| CGATCTGTGGGAATTGGGAT+CGG | 0.513021 | 1_4:+52300457 | None:intergenic |
| AGATGATGATGATGAATTTG+AGG | 0.513479 | 1_4:+52300338 | None:intergenic |
| GATCTGTGGGAATTGGGATC+GGG | 0.513803 | 1_4:+52300458 | None:intergenic |
| TGAGAATCTTTATCGAGAAA+AGG | 0.513809 | 1_4:+52300481 | None:intergenic |
| GGAGGTTGTTGATGGAATTG+AGG | 0.515360 | 1_4:+52300299 | None:intergenic |
| CACCCCAATTCACCTTCTCG+TGG | 0.518341 | 1_4:-52300402 | Msa0169170:five_prime_UTR |
| ATCTGCTAGCAGCAGCTGAT+CGG | 0.518356 | 1_4:-52297933 | Msa0169170:CDS |
| TACTGGGATTAACTCAAAAT+GGG | 0.520060 | 1_4:-52297977 | Msa0169170:CDS |
| CGGGGTATTCACTCTCAAAA+GGG | 0.521264 | 1_4:-52300227 | Msa0169170:CDS |
| CGATCCCAATTCCCACAGAT+CGG | 0.522484 | 1_4:-52300456 | Msa0169170:five_prime_UTR |
| TCATCGCGCTTGCGAGTGAA+GGG | 0.522765 | 1_4:-52300086 | Msa0169170:CDS |
| AATATAGGGGAATTTGAAGA+TGG | 0.524378 | 1_4:+52300521 | None:intergenic |
| TCTGTTTGAAATTCATTGCA+AGG | 0.524584 | 1_4:-52297789 | Msa0169170:CDS |
| AAAAGCTCAGTCAAAACAGA+TGG | 0.526627 | 1_4:+52297265 | None:intergenic |
| AACAGGGTTCTCTGGAGACC+TGG | 0.530076 | 1_4:+52297118 | None:intergenic |
| CTTAGTGTTAATTGTAGCGT+TGG | 0.538942 | 1_4:-52299178 | Msa0169170:CDS |
| TACAGTGAACCGTGGATAGA+GGG | 0.541214 | 1_4:-52297077 | Msa0169170:three_prime_UTR |
| GATGGAATTGAGGGTGGTGA+TGG | 0.542993 | 1_4:+52300309 | None:intergenic |
| GTTGCAGGTTTGTCTTCGAT+AGG | 0.543065 | 1_4:-52296966 | Msa0169170:three_prime_UTR |
| AGGAACGAAGCAATACTTGA+TGG | 0.545226 | 1_4:-52297193 | Msa0169170:CDS |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 1_4:-52300022 | Msa0169170:CDS |
| CTGCTTTCAGCTGGAAACAA+TGG | 0.557661 | 1_4:+52297812 | None:intergenic |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 1_4:-52300029 | Msa0169170:CDS |
| TAGCAGATGCTGAGCCATCA+AGG | 0.560135 | 1_4:+52297948 | None:intergenic |
| CAGAATTCAAACCCGATCTG+TGG | 0.571511 | 1_4:+52300444 | None:intergenic |
| GAATCTTTATCGAGAAAAGG+TGG | 0.572216 | 1_4:+52300484 | None:intergenic |
| TTGGAATCGAAAATGTTCTA+GGG | 0.573539 | 1_4:+52299131 | None:intergenic |
| AATGGAAGAAAATCTATGGA+TGG | 0.576433 | 1_4:+52300588 | None:intergenic |
| TTTGATAGGACGTTGGAGAG+TGG | 0.581385 | 1_4:-52299988 | Msa0169170:CDS |
| CGGACTTCCTGTGCAAGCAT+AGG | 0.582301 | 1_4:-52297213 | Msa0169170:CDS |
| ACGCGCTATGGACTTGCGCG+TGG | 0.582317 | 1_4:+52300637 | None:intergenic |
| ATGTGAGCCTTTGATGGTGT+CGG | 0.584850 | 1_4:+52300263 | None:intergenic |
| GTTGTTGATGGAATTGAGGG+TGG | 0.596454 | 1_4:+52300303 | None:intergenic |
| TGAAATATCGTGGTAGCATG+TGG | 0.600425 | 1_4:-52299954 | Msa0169170:intron |
| TCGATAACCGACACCATCAA+AGG | 0.601387 | 1_4:-52300270 | Msa0169170:CDS |
| CAAAGCTAAAGTTGTAGCCA+CGG | 0.605118 | 1_4:+52297846 | None:intergenic |
| TCAGCTGTGATGCAAACTGA+TGG | 0.605667 | 1_4:-52297313 | Msa0169170:intron |
| AATCTTTATCGAGAAAAGGT+GGG | 0.605946 | 1_4:+52300485 | None:intergenic |
| AGAATTCAAACCCGATCTGT+GGG | 0.606842 | 1_4:+52300445 | None:intergenic |
| ATTGTAGCGTTGGTGTTGTG+AGG | 0.611297 | 1_4:-52299168 | Msa0169170:CDS |
| TGTAAATGTAACATGTTTGG+TGG | 0.611863 | 1_4:-52296990 | Msa0169170:three_prime_UTR |
| CAGTGATGTAAATGGAAGGC+GGG | 0.613054 | 1_4:-52297170 | Msa0169170:CDS |
| CGCCCATTCGTACCCACCAA+CGG | 0.616095 | 1_4:+52300167 | None:intergenic |
| TGATCGTCTCCCTCTATCCA+CGG | 0.618152 | 1_4:+52297068 | None:intergenic |
| CCCATAAGAGAGCCACGAGA+AGG | 0.621474 | 1_4:+52300390 | None:intergenic |
| GATGATGATGAATTTGAGGA+TGG | 0.626655 | 1_4:+52300342 | None:intergenic |
| CCTTATACGTTGAAATATCG+TGG | 0.627057 | 1_4:-52299964 | Msa0169170:CDS |
| AAAGCTCAGTCAAAACAGAT+GGG | 0.629546 | 1_4:+52297266 | None:intergenic |
| TATAAAAGTTGAAGATATCG+AGG | 0.632506 | 1_4:-52298930 | Msa0169170:CDS |
| ACACCATCAAAGGCTCACAT+AGG | 0.632820 | 1_4:-52300260 | Msa0169170:CDS |
| GTCGGTTATCGATGTTGAGG+AGG | 0.637096 | 1_4:+52300281 | None:intergenic |
| GTTGTGAGGTCACACACAGA+GGG | 0.645126 | 1_4:-52299154 | Msa0169170:CDS |
| GGTATGCCTTAGATAGACTT+AGG | 0.647862 | 1_4:-52297912 | Msa0169170:CDS |
| GGAAGAAAATCTATGGATGG+TGG | 0.652202 | 1_4:+52300591 | None:intergenic |
| CACATAGGTTCAAGATAACG+GGG | 0.658135 | 1_4:-52300245 | Msa0169170:CDS |
| AGCCACGAGAAGGTGAATTG+GGG | 0.664711 | 1_4:+52300400 | None:intergenic |
| CCCTGATGGGAAAAGCGTGG+AGG | 0.667337 | 1_4:-52300133 | Msa0169170:CDS |
| TTACCCTGATGGGAAAAGCG+TGG | 0.670712 | 1_4:-52300136 | Msa0169170:CDS |
| ATGGCAGTGATGTAAATGGA+AGG | 0.702793 | 1_4:-52297174 | Msa0169170:CDS |
| AGATGTTGCAATAAATACCG+TGG | 0.705274 | 1_4:-52297863 | Msa0169170:CDS |
| GCAGTGATGTAAATGGAAGG+CGG | 0.707656 | 1_4:-52297171 | Msa0169170:CDS |
| GGTGTCGGTTATCGATGTTG+AGG | 0.707765 | 1_4:+52300278 | None:intergenic |
| TGTTGTGAGGTCACACACAG+AGG | 0.714300 | 1_4:-52299155 | Msa0169170:CDS |
| GCAAGGCCTGAAAATCTCAG+AGG | 0.724609 | 1_4:-52297772 | Msa0169170:intron |
| AGATTCTTCGAGAAACAACG+AGG | 0.757753 | 1_4:-52300365 | Msa0169170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAGAAAGATGAAAATT+TGG | - | chr1_4:52297855-52297874 | Msa0169170:CDS | 15.0% |
| !! | ATGCTTAACAATTATAATAA+GGG | + | chr1_4:52298782-52298801 | None:intergenic | 15.0% |
| !! | TATGCTTAACAATTATAATA+AGG | + | chr1_4:52298783-52298802 | None:intergenic | 15.0% |
| !!! | AATGTTGATAAAAAAAATAG+AGG | + | chr1_4:52299046-52299065 | None:intergenic | 15.0% |
| !! | TCAAAATAGAGAAAAAAATA+TGG | + | chr1_4:52299478-52299497 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCTATTTTGA+AGG | - | chr1_4:52299478-52299497 | Msa0169170:intron | 15.0% |
| !! | AAAAAATGGAAGAAAATCTA+TGG | + | chr1_4:52296946-52296965 | None:intergenic | 20.0% |
| !! | AGAAGAGATAAATGAAAAAA+TGG | + | chr1_4:52296960-52296979 | None:intergenic | 20.0% |
| !!! | ATTACTTTGAGTTATTTAAG+GGG | + | chr1_4:52298097-52298116 | None:intergenic | 20.0% |
| !!! | CATTACTTTGAGTTATTTAA+GGG | + | chr1_4:52298098-52298117 | None:intergenic | 20.0% |
| !!! | ATTGTTTTAAATTGTGTTTC+AGG | - | chr1_4:52298263-52298282 | Msa0169170:intron | 20.0% |
| !!! | TTGTTTTAAATTGTGTTTCA+GGG | - | chr1_4:52298264-52298283 | Msa0169170:intron | 20.0% |
| !! | ATTATTTAAACCTTGAAAAC+AGG | + | chr1_4:52298625-52298644 | None:intergenic | 20.0% |
| !! | TGCTTAACAATTATAATAAG+GGG | + | chr1_4:52298781-52298800 | None:intergenic | 20.0% |
| !! | AGAACACAACAATAAAAATA+TGG | - | chr1_4:52299003-52299022 | Msa0169170:CDS | 20.0% |
| !! | TCTTTATACCAATTAACATT+TGG | + | chr1_4:52299098-52299117 | None:intergenic | 20.0% |
| !! | TAAAGGAAATAAAATCAGAA+AGG | + | chr1_4:52299246-52299265 | None:intergenic | 20.0% |
| !!! | ATTTTATTTCCTTTATTGCT+TGG | - | chr1_4:52299251-52299270 | Msa0169170:intron | 20.0% |
| !! | TCTAATTCTTATTAAACCAT+TGG | - | chr1_4:52299306-52299325 | Msa0169170:intron | 20.0% |
| !! | AGAAAAATATGTGCAATATT+AGG | - | chr1_4:52299827-52299846 | Msa0169170:intron | 20.0% |
| !! | GAAAAATATGTGCAATATTA+GGG | - | chr1_4:52299828-52299847 | Msa0169170:intron | 20.0% |
| !! | AAAAATATGTGCAATATTAG+GGG | - | chr1_4:52299829-52299848 | Msa0169170:intron | 20.0% |
| !!! | GTTCTTAAACTCTTTTAATT+AGG | - | chr1_4:52300044-52300063 | Msa0169170:CDS | 20.0% |
| ! | ATTTGAAGATGGAAATTCTA+GGG | + | chr1_4:52296998-52297017 | None:intergenic | 25.0% |
| ! | AATTTGAAGATGGAAATTCT+AGG | + | chr1_4:52296999-52297018 | None:intergenic | 25.0% |
| !!! | ATTTTGGTGAGAAAATATAG+GGG | + | chr1_4:52297022-52297041 | None:intergenic | 25.0% |
| !!! | GATTTTGGTGAGAAAATATA+GGG | + | chr1_4:52297023-52297042 | None:intergenic | 25.0% |
| !!! | AAACGTTTGATTCGTTTTTT+GGG | - | chr1_4:52298031-52298050 | Msa0169170:intron | 25.0% |
| !! | CCATTACTTTGAGTTATTTA+AGG | + | chr1_4:52298099-52298118 | None:intergenic | 25.0% |
| ! | CCTTAAATAACTCAAAGTAA+TGG | - | chr1_4:52298096-52298115 | Msa0169170:intron | 25.0% |
| ! | AATCAACAAATCCATTCAAT+GGG | + | chr1_4:52298159-52298178 | None:intergenic | 25.0% |
| ! | AAATCAACAAATCCATTCAA+TGG | + | chr1_4:52298160-52298179 | None:intergenic | 25.0% |
| !!! | TTGAATGGATTTGTTGATTT+TGG | - | chr1_4:52298160-52298179 | Msa0169170:intron | 25.0% |
| !!! | TGTTTTAAATTGTGTTTCAG+GGG | - | chr1_4:52298265-52298284 | Msa0169170:intron | 25.0% |
| ! | TATAAAAGTTGAAGATATCG+AGG | - | chr1_4:52298597-52298616 | Msa0169170:intron | 25.0% |
| ! | ACATGTTTGCAAAAAAACAT+TGG | - | chr1_4:52298869-52298888 | Msa0169170:intron | 25.0% |
| ! | TTATACCAATTAACATTTGG+AGG | + | chr1_4:52299095-52299114 | None:intergenic | 25.0% |
| ! | ATGTTAATTGGTATAAAGAC+TGG | - | chr1_4:52299099-52299118 | Msa0169170:CDS | 25.0% |
| ! | AATTTATACAAGAACTTGTG+GGG | + | chr1_4:52299200-52299219 | None:intergenic | 25.0% |
| ! | CAATTTATACAAGAACTTGT+GGG | + | chr1_4:52299201-52299220 | None:intergenic | 25.0% |
| ! | TCAATTTATACAAGAACTTG+TGG | + | chr1_4:52299202-52299221 | None:intergenic | 25.0% |
| ! | GAAGTTTAATAACATGCATA+TGG | - | chr1_4:52299425-52299444 | Msa0169170:intron | 25.0% |
| ! | ATTGCTGCATGTTATATATT+GGG | - | chr1_4:52299502-52299521 | Msa0169170:intron | 25.0% |
| !! | AATACTTCAGTTGATATCAT+AGG | + | chr1_4:52300176-52300195 | None:intergenic | 25.0% |
| ! | AGATGTAAATGTAACATGTT+TGG | - | chr1_4:52300534-52300553 | Msa0169170:five_prime_UTR | 25.0% |
| ! | CGTGGATTTTATAGTTGAAT+TGG | + | chr1_4:52296875-52296894 | None:intergenic | 30.0% |
| AATGGAAGAAAATCTATGGA+TGG | + | chr1_4:52296942-52296961 | None:intergenic | 30.0% | |
| AATATAGGGGAATTTGAAGA+TGG | + | chr1_4:52297009-52297028 | None:intergenic | 30.0% | |
| !! | GGATTTTGGTGAGAAAATAT+AGG | + | chr1_4:52297024-52297043 | None:intergenic | 30.0% |
| AATCTTTATCGAGAAAAGGT+GGG | + | chr1_4:52297045-52297064 | None:intergenic | 30.0% | |
| TGAGAATCTTTATCGAGAAA+AGG | + | chr1_4:52297049-52297068 | None:intergenic | 30.0% | |
| ! | AGATGATGATGATGAATTTG+AGG | + | chr1_4:52297192-52297211 | None:intergenic | 30.0% |
| !!! | CGATTTATTTTTACCCTGAT+GGG | - | chr1_4:52297381-52297400 | Msa0169170:intron | 30.0% |
| ! | GCTTTTTGAATTAACGCTTT+TGG | - | chr1_4:52297478-52297497 | Msa0169170:intron | 30.0% |
| !! | AGGTTCATAGTCATTTTGAT+AGG | - | chr1_4:52297525-52297544 | Msa0169170:intron | 30.0% |
| TGATTCTAATTCCTTATCGA+GGG | - | chr1_4:52297664-52297683 | Msa0169170:intron | 30.0% | |
| ! | GGAATGATAGGAATTTTTAC+TGG | - | chr1_4:52297785-52297804 | Msa0169170:CDS | 30.0% |
| TTACATACTTATGCTTCTGT+GGG | - | chr1_4:52297816-52297835 | Msa0169170:CDS | 30.0% | |
| TTCTGAACATTGTTGGAAAA+GGG | - | chr1_4:52297921-52297940 | Msa0169170:CDS | 30.0% | |
| !!! | CAAACGTTTGATTCGTTTTT+TGG | - | chr1_4:52298030-52298049 | Msa0169170:CDS | 30.0% |
| !!! | AACGTTTGATTCGTTTTTTG+GGG | - | chr1_4:52298032-52298051 | Msa0169170:intron | 30.0% |
| ATAGTCTAACTTCAAAACCA+AGG | + | chr1_4:52298074-52298093 | None:intergenic | 30.0% | |
| !!! | TGGATTTGTTGATTTTGGTT+TGG | - | chr1_4:52298165-52298184 | Msa0169170:intron | 30.0% |
| !!! | ATGGAACTTTTTTGTGACAA+TGG | - | chr1_4:52298215-52298234 | Msa0169170:intron | 30.0% |
| CACTAAGACAGTTATCTTTA+AGG | + | chr1_4:52298336-52298355 | None:intergenic | 30.0% | |
| TTGGAATCGAAAATGTTCTA+GGG | + | chr1_4:52298399-52298418 | None:intergenic | 30.0% | |
| ATTGGAATCGAAAATGTTCT+AGG | + | chr1_4:52298400-52298419 | None:intergenic | 30.0% | |
| !!! | GATGTGAATTTTGAAGTGAA+TGG | - | chr1_4:52298478-52298497 | Msa0169170:intron | 30.0% |
| ! | AGTGAATGGTGAAATTTTTG+CGG | - | chr1_4:52298492-52298511 | Msa0169170:intron | 30.0% |
| ! | AATTTTTGCGGCTCATAAAT+TGG | - | chr1_4:52298504-52298523 | Msa0169170:intron | 30.0% |
| CGAAGTTCAATATCTATATC+AGG | + | chr1_4:52298740-52298759 | None:intergenic | 30.0% | |
| TTATGCCTCCAAATGTTAAT+TGG | - | chr1_4:52299087-52299106 | Msa0169170:CDS | 30.0% | |
| !!! | ACTGGTATTTTTTCAGATTG+AGG | - | chr1_4:52299117-52299136 | Msa0169170:CDS | 30.0% |
| ACTTGTGTTTAATGTGTTTG+TGG | - | chr1_4:52299383-52299402 | Msa0169170:intron | 30.0% | |
| CATTGCTGCATGTTATATAT+TGG | - | chr1_4:52299501-52299520 | Msa0169170:intron | 30.0% | |
| TTACTGGGATTAACTCAAAA+TGG | - | chr1_4:52299549-52299568 | Msa0169170:intron | 30.0% | |
| TACTGGGATTAACTCAAAAT+GGG | - | chr1_4:52299550-52299569 | Msa0169170:intron | 30.0% | |
| ! | TCTGTTTGAAATTCATTGCA+AGG | - | chr1_4:52299738-52299757 | Msa0169170:intron | 30.0% |
| ! | CGTATGCTTATGCTTTATTA+AGG | - | chr1_4:52299941-52299960 | Msa0169170:intron | 30.0% |
| AAATCAAGCTTAGTGACTTT+GGG | - | chr1_4:52300002-52300021 | Msa0169170:CDS | 30.0% | |
| AATTAGGATGCTGTATATGA+TGG | - | chr1_4:52300060-52300079 | Msa0169170:CDS | 30.0% | |
| TACAAATTTACCAACGCTTT+GGG | + | chr1_4:52300100-52300119 | None:intergenic | 30.0% | |
| ATACAAATTTACCAACGCTT+TGG | + | chr1_4:52300101-52300120 | None:intergenic | 30.0% | |
| TCACAGCTGAAAAAAAGAAA+GGG | + | chr1_4:52300204-52300223 | None:intergenic | 30.0% | |
| ATCACAGCTGAAAAAAAGAA+AGG | + | chr1_4:52300205-52300224 | None:intergenic | 30.0% | |
| ! | CTGTAATTTTTGAATGTGAG+TGG | + | chr1_4:52300435-52300454 | None:intergenic | 30.0% |
| TGTAAATGTAACATGTTTGG+TGG | - | chr1_4:52300537-52300556 | Msa0169170:five_prime_UTR | 30.0% | |
| !! | GAAATTCTAGGGTTTGGATT+TGG | + | chr1_4:52296987-52297006 | None:intergenic | 35.0% |
| !! | AAGATGGAAATTCTAGGGTT+TGG | + | chr1_4:52296993-52297012 | None:intergenic | 35.0% |
| GAATCTTTATCGAGAAAAGG+TGG | + | chr1_4:52297046-52297065 | None:intergenic | 35.0% | |
| ! | GATGATGATGAATTTGAGGA+TGG | + | chr1_4:52297188-52297207 | None:intergenic | 35.0% |
| CTCACATAGGTTCAAGATAA+CGG | - | chr1_4:52297280-52297299 | Msa0169170:CDS | 35.0% | |
| TCACATAGGTTCAAGATAAC+GGG | - | chr1_4:52297281-52297300 | Msa0169170:CDS | 35.0% | |
| TATTCACTCTCAAAAGGGAT+TGG | - | chr1_4:52297305-52297324 | Msa0169170:CDS | 35.0% | |
| TCTCAAAAGGGATTGGAATT+GGG | - | chr1_4:52297312-52297331 | Msa0169170:CDS | 35.0% | |
| !!! | GCGATTTATTTTTACCCTGA+TGG | - | chr1_4:52297380-52297399 | Msa0169170:intron | 35.0% |
| !! | TAGTCATTTTGATAGGACGT+TGG | - | chr1_4:52297532-52297551 | Msa0169170:intron | 35.0% |
| CCACGATATTTCAACGTATA+AGG | + | chr1_4:52297566-52297585 | None:intergenic | 35.0% | |
| CCTTATACGTTGAAATATCG+TGG | - | chr1_4:52297563-52297582 | Msa0169170:intron | 35.0% | |
| CTGATTCTAATTCCTTATCG+AGG | - | chr1_4:52297663-52297682 | Msa0169170:intron | 35.0% | |
| TGTTTGTGAAGGTTTAAGCT+TGG | - | chr1_4:52297690-52297709 | Msa0169170:intron | 35.0% | |
| TTCTTGAATTGACCCAATGT+TGG | - | chr1_4:52297756-52297775 | Msa0169170:intron | 35.0% | |
| CATTCCAAGTTACCAACATT+GGG | + | chr1_4:52297771-52297790 | None:intergenic | 35.0% | |
| TCATTCCAAGTTACCAACAT+TGG | + | chr1_4:52297772-52297791 | None:intergenic | 35.0% | |
| !! | TGTTGGTAACTTGGAATGAT+AGG | - | chr1_4:52297773-52297792 | Msa0169170:CDS | 35.0% |
| GTTACATACTTATGCTTCTG+TGG | - | chr1_4:52297815-52297834 | Msa0169170:CDS | 35.0% | |
| ! | TGAAGTGTTCTGAACATTGT+TGG | - | chr1_4:52297914-52297933 | Msa0169170:CDS | 35.0% |
| ! | GTTCTGAACATTGTTGGAAA+AGG | - | chr1_4:52297920-52297939 | Msa0169170:CDS | 35.0% |
| TCTGAACATTGTTGGAAAAG+GGG | - | chr1_4:52297922-52297941 | Msa0169170:CDS | 35.0% | |
| !!! | ACGTTTGATTCGTTTTTTGG+GGG | - | chr1_4:52298033-52298052 | Msa0169170:intron | 35.0% |
| !!! | CTTTTTTGTGACAATGGAAG+AGG | - | chr1_4:52298221-52298240 | Msa0169170:intron | 35.0% |
| !! | GAAGAGGTACAGTTTTCTAA+AGG | - | chr1_4:52298237-52298256 | Msa0169170:intron | 35.0% |
| CTTAGTGTTAATTGTAGCGT+TGG | - | chr1_4:52298349-52298368 | Msa0169170:intron | 35.0% | |
| CCAATAGTAGAAGGTGATAT+TGG | + | chr1_4:52298418-52298437 | None:intergenic | 35.0% | |
| CCAATATCACCTTCTACTAT+TGG | - | chr1_4:52298415-52298434 | Msa0169170:intron | 35.0% | |
| !! | AAAAGCTGAGCTCTAAAAAC+AGG | + | chr1_4:52298547-52298566 | None:intergenic | 35.0% |
| !!! | GTTTTTAGAGCTCAGCTTTT+TGG | - | chr1_4:52298547-52298566 | Msa0169170:intron | 35.0% |
| TGTGTGTTCTGATCTTTCAT+AGG | + | chr1_4:52298574-52298593 | None:intergenic | 35.0% | |
| ATATCAGGACAGAGACAAAA+AGG | + | chr1_4:52298725-52298744 | None:intergenic | 35.0% | |
| ATATACTCGCAAATTGCAAC+TGG | + | chr1_4:52298941-52298960 | None:intergenic | 35.0% | |
| TTGCGAGTATATTTGACTGT+TGG | - | chr1_4:52298949-52298968 | Msa0169170:CDS | 35.0% | |
| ! | ACATTTGGAGGCATAAATGA+GGG | + | chr1_4:52299083-52299102 | None:intergenic | 35.0% |
| ! | AACATTTGGAGGCATAAATG+AGG | + | chr1_4:52299084-52299103 | None:intergenic | 35.0% |
| AAACAGGAACCAAGCAATAA+AGG | + | chr1_4:52299263-52299282 | None:intergenic | 35.0% | |
| AGATGTTGCAATAAATACCG+TGG | - | chr1_4:52299664-52299683 | Msa0169170:intron | 35.0% | |
| ATGTGCAATATTAGGGGAAT+TGG | - | chr1_4:52299835-52299854 | Msa0169170:intron | 35.0% | |
| TGTGCAATATTAGGGGAATT+GGG | - | chr1_4:52299836-52299855 | Msa0169170:intron | 35.0% | |
| ATAGCAACATACAGACTTTC+AGG | + | chr1_4:52299873-52299892 | None:intergenic | 35.0% | |
| CAAATCAAGCTTAGTGACTT+TGG | - | chr1_4:52300001-52300020 | Msa0169170:CDS | 35.0% | |
| GGTCTGGATGAAGAATAAAT+AGG | + | chr1_4:52300155-52300174 | None:intergenic | 35.0% | |
| ! | TTCAGTTGATATCATAGGTC+TGG | + | chr1_4:52300171-52300190 | None:intergenic | 35.0% |
| AAAGCTCAGTCAAAACAGAT+GGG | + | chr1_4:52300264-52300283 | None:intergenic | 35.0% | |
| AAAAGCTCAGTCAAAACAGA+TGG | + | chr1_4:52300265-52300284 | None:intergenic | 35.0% | |
| !!! | ATCTGTTTTGACTGAGCTTT+TGG | - | chr1_4:52300264-52300283 | Msa0169170:CDS | 35.0% |
| CTATACTGTGAAAAATGACC+AGG | - | chr1_4:52300391-52300410 | Msa0169170:exon | 35.0% | |
| ! | TTTTGAATGTGAGTGGAACA+GGG | + | chr1_4:52300428-52300447 | None:intergenic | 35.0% |
| ! | TTTTTGAATGTGAGTGGAAC+AGG | + | chr1_4:52300429-52300448 | None:intergenic | 35.0% |
| TCAAAAATTACAGTGAACCG+TGG | - | chr1_4:52300442-52300461 | Msa0169170:five_prime_UTR | 35.0% | |
| ! | TCTATGGATGGTGGTGATAA+AGG | + | chr1_4:52296930-52296949 | None:intergenic | 40.0% |
| GGAAGAAAATCTATGGATGG+TGG | + | chr1_4:52296939-52296958 | None:intergenic | 40.0% | |
| ! | ATCGAGAAAAGGTGGGATTT+TGG | + | chr1_4:52297038-52297057 | None:intergenic | 40.0% |
| AGAATTCAAACCCGATCTGT+GGG | + | chr1_4:52297085-52297104 | None:intergenic | 40.0% | |
| GGTGAATTGGGGTGAAATTA+GGG | + | chr1_4:52297119-52297138 | None:intergenic | 40.0% | |
| AGGTGAATTGGGGTGAAATT+AGG | + | chr1_4:52297120-52297139 | None:intergenic | 40.0% | |
| AGATTCTTCGAGAAACAACG+AGG | - | chr1_4:52297162-52297181 | Msa0169170:CDS | 40.0% | |
| ! | GAGGTTGTTGATGGAATTGA+GGG | + | chr1_4:52297230-52297249 | None:intergenic | 40.0% |
| CACATAGGTTCAAGATAACG+GGG | - | chr1_4:52297282-52297301 | Msa0169170:CDS | 40.0% | |
| CTCTCAAAAGGGATTGGAAT+TGG | - | chr1_4:52297311-52297330 | Msa0169170:CDS | 40.0% | |
| ! | TTAACGCTTTTGGATCAGAG+TGG | - | chr1_4:52297488-52297507 | Msa0169170:intron | 40.0% |
| ! | TAACGCTTTTGGATCAGAGT+GGG | - | chr1_4:52297489-52297508 | Msa0169170:intron | 40.0% |
| TGAAATATCGTGGTAGCATG+TGG | - | chr1_4:52297573-52297592 | Msa0169170:intron | 40.0% | |
| TTGTGAAGGTTTAAGCTTGG+TGG | - | chr1_4:52297693-52297712 | Msa0169170:intron | 40.0% | |
| TGTGAAGGTTTAAGCTTGGT+GGG | - | chr1_4:52297694-52297713 | Msa0169170:intron | 40.0% | |
| !! | TTGACCCAATGTTGGTAACT+TGG | - | chr1_4:52297764-52297783 | Msa0169170:intron | 40.0% |
| CTGAACATTGTTGGAAAAGG+GGG | - | chr1_4:52297923-52297942 | Msa0169170:CDS | 40.0% | |
| TGAACATTGTTGGAAAAGGG+GGG | - | chr1_4:52297924-52297943 | Msa0169170:CDS | 40.0% | |
| !!! | TTTGATTCGTTTTTTGGGGG+TGG | - | chr1_4:52298036-52298055 | Msa0169170:intron | 40.0% |
| !!! | TTGATTCGTTTTTTGGGGGT+GGG | - | chr1_4:52298037-52298056 | Msa0169170:intron | 40.0% |
| !! | GTTTGTTGTCTCCCATTGAA+TGG | - | chr1_4:52298145-52298164 | Msa0169170:intron | 40.0% |
| TTCCTGCTGAATTGAGTTCA+TGG | - | chr1_4:52298196-52298215 | Msa0169170:intron | 40.0% | |
| TTCCATGAACTCAATTCAGC+AGG | + | chr1_4:52298201-52298220 | None:intergenic | 40.0% | |
| AACTGGTGACCAATAGTAGA+AGG | + | chr1_4:52298427-52298446 | None:intergenic | 40.0% | |
| TCTACTATTGGTCACCAGTT+TGG | - | chr1_4:52298427-52298446 | Msa0169170:intron | 40.0% | |
| CTACTATTGGTCACCAGTTT+GGG | - | chr1_4:52298428-52298447 | Msa0169170:intron | 40.0% | |
| TTTCCAAAAGCTTCCCAAAC+TGG | + | chr1_4:52298444-52298463 | None:intergenic | 40.0% | |
| !! | TTTGGGAAGCTTTTGGAAAG+TGG | - | chr1_4:52298445-52298464 | Msa0169170:intron | 40.0% |
| GTTCACTGAGATGTGAGATT+TGG | - | chr1_4:52299142-52299161 | Msa0169170:CDS | 40.0% | |
| GCTAGAACAACTCAACAAAC+AGG | + | chr1_4:52299279-52299298 | None:intergenic | 40.0% | |
| ! | GTTTGTTGAGTTGTTCTAGC+TGG | - | chr1_4:52299279-52299298 | Msa0169170:intron | 40.0% |
| AAGGCGGTTTGAAAAACCAA+TGG | + | chr1_4:52299325-52299344 | None:intergenic | 40.0% | |
| AAACTGCAGAAAGTCAAAGG+CGG | + | chr1_4:52299341-52299360 | None:intergenic | 40.0% | |
| CGTAAACTGCAGAAAGTCAA+AGG | + | chr1_4:52299344-52299363 | None:intergenic | 40.0% | |
| AAAATGGGCAACTACCTTGA+TGG | - | chr1_4:52299565-52299584 | Msa0169170:intron | 40.0% | |
| GGTATGCCTTAGATAGACTT+AGG | - | chr1_4:52299615-52299634 | Msa0169170:intron | 40.0% | |
| CATCAGCCTAAGTCTATCTA+AGG | + | chr1_4:52299624-52299643 | None:intergenic | 40.0% | |
| CAAAGCTAAAGTTGTAGCCA+CGG | + | chr1_4:52299684-52299703 | None:intergenic | 40.0% | |
| !!! | AACACACCTCTGAGATTTTC+AGG | + | chr1_4:52299764-52299783 | None:intergenic | 40.0% |
| AGGGGAATTGGGACATTAAA+AGG | - | chr1_4:52299847-52299866 | Msa0169170:intron | 40.0% | |
| AGCATACGATAGTCAACAAC+AGG | + | chr1_4:52299929-52299948 | None:intergenic | 40.0% | |
| ! | TACAGTTTTACCCAAAGCGT+TGG | - | chr1_4:52300087-52300106 | Msa0169170:CDS | 40.0% |
| ! | TGATGGTTTCGAGTACTTGA+AGG | - | chr1_4:52300231-52300250 | Msa0169170:CDS | 40.0% |
| GGCTAGATTTACTGAGCATT+CGG | - | chr1_4:52300294-52300313 | Msa0169170:CDS | 40.0% | |
| AGGAACGAAGCAATACTTGA+TGG | - | chr1_4:52300334-52300353 | Msa0169170:CDS | 40.0% | |
| ! | CTTGATGGCAGTGATGTAAA+TGG | - | chr1_4:52300349-52300368 | Msa0169170:CDS | 40.0% |
| ATGGCAGTGATGTAAATGGA+AGG | - | chr1_4:52300353-52300372 | Msa0169170:CDS | 40.0% | |
| AAACCCGATCTGTGGGAATT+GGG | + | chr1_4:52297078-52297097 | None:intergenic | 45.0% | |
| CAGAATTCAAACCCGATCTG+TGG | + | chr1_4:52297086-52297105 | None:intergenic | 45.0% | |
| ! | GTTGTTGATGGAATTGAGGG+TGG | + | chr1_4:52297227-52297246 | None:intergenic | 45.0% |
| ! | GGAGGTTGTTGATGGAATTG+AGG | + | chr1_4:52297231-52297250 | None:intergenic | 45.0% |
| GATGTTGAGGAGGTTGTTGA+TGG | + | chr1_4:52297239-52297258 | None:intergenic | 45.0% | |
| TCGATAACCGACACCATCAA+AGG | - | chr1_4:52297257-52297276 | Msa0169170:CDS | 45.0% | |
| !! | ATGTGAGCCTTTGATGGTGT+CGG | + | chr1_4:52297267-52297286 | None:intergenic | 45.0% |
| ACACCATCAAAGGCTCACAT+AGG | - | chr1_4:52297267-52297286 | Msa0169170:CDS | 45.0% | |
| GAACCTATGTGAGCCTTTGA+TGG | + | chr1_4:52297273-52297292 | None:intergenic | 45.0% | |
| ! | ACGGGGTATTCACTCTCAAA+AGG | - | chr1_4:52297299-52297318 | Msa0169170:CDS | 45.0% |
| ! | CGGGGTATTCACTCTCAAAA+GGG | - | chr1_4:52297300-52297319 | Msa0169170:CDS | 45.0% |
| !! | GCATCTGAGATTTTCACCGT+TGG | - | chr1_4:52297344-52297363 | Msa0169170:intron | 45.0% |
| !! | TCTGAGATTTTCACCGTTGG+TGG | - | chr1_4:52297347-52297366 | Msa0169170:intron | 45.0% |
| ! | CTGAGATTTTCACCGTTGGT+GGG | - | chr1_4:52297348-52297367 | Msa0169170:intron | 45.0% |
| GAGTGAAGGGACTGATGTTA+GGG | - | chr1_4:52297454-52297473 | Msa0169170:intron | 45.0% | |
| TTTGATAGGACGTTGGAGAG+TGG | - | chr1_4:52297539-52297558 | Msa0169170:intron | 45.0% | |
| CACAAACACTACCCTCGATA+AGG | + | chr1_4:52297678-52297697 | None:intergenic | 45.0% | |
| ATCGAGGGTAGTGTTTGTGA+AGG | - | chr1_4:52297679-52297698 | Msa0169170:intron | 45.0% | |
| !!! | TGATTCGTTTTTTGGGGGTG+GGG | - | chr1_4:52298038-52298057 | Msa0169170:intron | 45.0% |
| !! | ATTGTAGCGTTGGTGTTGTG+AGG | - | chr1_4:52298359-52298378 | Msa0169170:intron | 45.0% |
| ! | TCACCAGTTTGGGAAGCTTT+TGG | - | chr1_4:52298438-52298457 | Msa0169170:intron | 45.0% |
| ! | TATCGAGGCTCCTGTTTTCA+AGG | - | chr1_4:52298612-52298631 | Msa0169170:intron | 45.0% |
| TCGCAAATTGCAACTGGCAA+GGG | + | chr1_4:52298935-52298954 | None:intergenic | 45.0% | |
| CTGACATGCAAGAGCTTACT+GGG | - | chr1_4:52299534-52299553 | Msa0169170:intron | 45.0% | |
| ! | CGTGGCTACAACTTTAGCTT+TGG | - | chr1_4:52299682-52299701 | Msa0169170:intron | 45.0% |
| CTGCTTTCAGCTGGAAACAA+TGG | + | chr1_4:52299718-52299737 | None:intergenic | 45.0% | |
| TCAAACAGACTGCTTTCAGC+TGG | + | chr1_4:52299727-52299746 | None:intergenic | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | - | chr1_4:52300214-52300233 | Msa0169170:CDS | 45.0% | |
| !!! | GACTGAGCTTTTGGAGTATG+TGG | - | chr1_4:52300273-52300292 | Msa0169170:CDS | 45.0% |
| GCAGTGATGTAAATGGAAGG+CGG | - | chr1_4:52300356-52300375 | Msa0169170:CDS | 45.0% | |
| CAGTGATGTAAATGGAAGGC+GGG | - | chr1_4:52300357-52300376 | Msa0169170:CDS | 45.0% | |
| TTACAGTGAACCGTGGATAG+AGG | - | chr1_4:52300449-52300468 | Msa0169170:five_prime_UTR | 45.0% | |
| TACAGTGAACCGTGGATAGA+GGG | - | chr1_4:52300450-52300469 | Msa0169170:five_prime_UTR | 45.0% | |
| GGGAGACGATCAACATTCAT+AGG | - | chr1_4:52300470-52300489 | Msa0169170:five_prime_UTR | 45.0% | |
| !! | AACATGTTTGGTGGTGTTGC+AGG | - | chr1_4:52300546-52300565 | Msa0169170:five_prime_UTR | 45.0% |
| GTTGCAGGTTTGTCTTCGAT+AGG | - | chr1_4:52300561-52300580 | Msa0169170:five_prime_UTR | 45.0% | |
| AGCAAGCAAAAAAGGGACAG+AGG | + | chr1_4:52300657-52300676 | None:intergenic | 45.0% | |
| ! | AGTTGATGTGTCACGCGCTA+TGG | + | chr1_4:52296905-52296924 | None:intergenic | 50.0% |
| GATCTGTGGGAATTGGGATC+GGG | + | chr1_4:52297072-52297091 | None:intergenic | 50.0% | |
| CGATCTGTGGGAATTGGGAT+CGG | + | chr1_4:52297073-52297092 | None:intergenic | 50.0% | |
| CGATCCCAATTCCCACAGAT+CGG | - | chr1_4:52297071-52297090 | Msa0169170:three_prime_UTR | 50.0% | |
| GATCCCAATTCCCACAGATC+GGG | - | chr1_4:52297072-52297091 | Msa0169170:three_prime_UTR | 50.0% | |
| CAAACCCGATCTGTGGGAAT+TGG | + | chr1_4:52297079-52297098 | None:intergenic | 50.0% | |
| AGCCACGAGAAGGTGAATTG+GGG | + | chr1_4:52297130-52297149 | None:intergenic | 50.0% | |
| GAGCCACGAGAAGGTGAATT+GGG | + | chr1_4:52297131-52297150 | None:intergenic | 50.0% | |
| AGAGCCACGAGAAGGTGAAT+TGG | + | chr1_4:52297132-52297151 | None:intergenic | 50.0% | |
| ACCTTCTCGTGGCTCTCTTA+TGG | - | chr1_4:52297136-52297155 | Msa0169170:exon | 50.0% | |
| CCTTCTCGTGGCTCTCTTAT+GGG | - | chr1_4:52297137-52297156 | Msa0169170:exon | 50.0% | |
| GATGGAATTGAGGGTGGTGA+TGG | + | chr1_4:52297221-52297240 | None:intergenic | 50.0% | |
| GTCGGTTATCGATGTTGAGG+AGG | + | chr1_4:52297249-52297268 | None:intergenic | 50.0% | |
| !! | GGTGTCGGTTATCGATGTTG+AGG | + | chr1_4:52297252-52297271 | None:intergenic | 50.0% |
| TTACCCTGATGGGAAAAGCG+TGG | - | chr1_4:52297391-52297410 | Msa0169170:intron | 50.0% | |
| CGAGTGAAGGGACTGATGTT+AGG | - | chr1_4:52297453-52297472 | Msa0169170:intron | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | - | chr1_4:52297498-52297517 | Msa0169170:intron | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | - | chr1_4:52297505-52297524 | Msa0169170:intron | 50.0% |
| TGTTGGAAAAGGGGGGTGAA+AGG | - | chr1_4:52297931-52297950 | Msa0169170:CDS | 50.0% | |
| TGTTGTGAGGTCACACACAG+AGG | - | chr1_4:52298372-52298391 | Msa0169170:intron | 50.0% | |
| GTTGTGAGGTCACACACAGA+GGG | - | chr1_4:52298373-52298392 | Msa0169170:intron | 50.0% | |
| AACTAATGCCAGAAGCAGGC+AGG | + | chr1_4:52298832-52298851 | None:intergenic | 50.0% | |
| TGCCTGCTTCTGGCATTAGT+TGG | - | chr1_4:52298831-52298850 | Msa0169170:intron | 50.0% | |
| GCCTGCTTCTGGCATTAGTT+GGG | - | chr1_4:52298832-52298851 | Msa0169170:intron | 50.0% | |
| ACCCAACTAATGCCAGAAGC+AGG | + | chr1_4:52298836-52298855 | None:intergenic | 50.0% | |
| CAAATTGCAACTGGCAAGGG+TGG | + | chr1_4:52298932-52298951 | None:intergenic | 50.0% | |
| CTCGCAAATTGCAACTGGCA+AGG | + | chr1_4:52298936-52298955 | None:intergenic | 50.0% | |
| GAGGCATAAATGAGGGAAGC+GGG | + | chr1_4:52299076-52299095 | None:intergenic | 50.0% | |
| ! | GGAGGCATAAATGAGGGAAG+CGG | + | chr1_4:52299077-52299096 | None:intergenic | 50.0% |
| CCAGTAAGCTCTTGCATGTC+AGG | + | chr1_4:52299536-52299555 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | - | chr1_4:52299533-52299552 | Msa0169170:intron | 50.0% | |
| TAGCAGATGCTGAGCCATCA+AGG | + | chr1_4:52299582-52299601 | None:intergenic | 50.0% | |
| ATCTGCTAGCAGCAGCTGAT+CGG | - | chr1_4:52299594-52299613 | Msa0169170:intron | 50.0% | |
| GCAAGGCCTGAAAATCTCAG+AGG | - | chr1_4:52299755-52299774 | Msa0169170:intron | 50.0% | |
| CTTCGTTCCTATGCTTGCAC+AGG | + | chr1_4:52300324-52300343 | None:intergenic | 50.0% | |
| TGATCGTCTCCCTCTATCCA+CGG | + | chr1_4:52300462-52300481 | None:intergenic | 50.0% | |
| CACCCCAATTCACCTTCTCG+TGG | - | chr1_4:52297125-52297144 | Msa0169170:exon | 55.0% | |
| CCCATAAGAGAGCCACGAGA+AGG | + | chr1_4:52297140-52297159 | None:intergenic | 55.0% | |
| ! | TCACCGTTGGTGGGTACGAA+TGG | - | chr1_4:52297357-52297376 | Msa0169170:intron | 55.0% |
| ! | CACCGTTGGTGGGTACGAAT+GGG | - | chr1_4:52297358-52297377 | Msa0169170:intron | 55.0% |
| ! | CCTCCACGCTTTTCCCATCA+GGG | + | chr1_4:52297397-52297416 | None:intergenic | 55.0% |
| ! | TCCTCCACGCTTTTCCCATC+AGG | + | chr1_4:52297398-52297417 | None:intergenic | 55.0% |
| TTCATCGCGCTTGCGAGTGA+AGG | - | chr1_4:52297440-52297459 | Msa0169170:intron | 55.0% | |
| TCATCGCGCTTGCGAGTGAA+GGG | - | chr1_4:52297441-52297460 | Msa0169170:intron | 55.0% | |
| !!! | TTCGTTTTTTGGGGGTGGGG+TGG | - | chr1_4:52298041-52298060 | Msa0169170:intron | 55.0% |
| !!! | TCGTTTTTTGGGGGTGGGGT+GGG | - | chr1_4:52298042-52298061 | Msa0169170:intron | 55.0% |
| GGCAGGATTGGGCACTAAGT+TGG | + | chr1_4:52298815-52298834 | None:intergenic | 55.0% | |
| TGCCAGAAGCAGGCAGGATT+GGG | + | chr1_4:52298826-52298845 | None:intergenic | 55.0% | |
| ATGCCAGAAGCAGGCAGGAT+TGG | + | chr1_4:52298827-52298846 | None:intergenic | 55.0% | |
| CGGACTTCCTGTGCAAGCAT+AGG | - | chr1_4:52300314-52300333 | Msa0169170:CDS | 55.0% | |
| ! | AACAGGGTTCTCTGGAGACC+TGG | + | chr1_4:52300412-52300431 | None:intergenic | 55.0% |
| GTGAGTGGAACAGGGTTCTC+TGG | + | chr1_4:52300420-52300439 | None:intergenic | 55.0% | |
| CGCCCATTCGTACCCACCAA+CGG | + | chr1_4:52297363-52297382 | None:intergenic | 60.0% | |
| ! | CCCTGATGGGAAAAGCGTGG+AGG | - | chr1_4:52297394-52297413 | Msa0169170:intron | 60.0% |
| TGCCCAATCCTGCCTGCTTC+TGG | - | chr1_4:52298821-52298840 | Msa0169170:intron | 60.0% | |
| ACGCGCTATGGACTTGCGCG+TGG | + | chr1_4:52296893-52296912 | None:intergenic | 65.0% | |
| !! | TTTTGGGGGTGGGGTGGGAG+AGG | - | chr1_4:52298047-52298066 | Msa0169170:intron | 65.0% |
| TTTGGGGGTGGGGTGGGAGA+GGG | - | chr1_4:52298048-52298067 | Msa0169170:intron | 65.0% | |
| GGTGGGGTGGGAGAGGGCCT+TGG | - | chr1_4:52298054-52298073 | Msa0169170:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52296871 | 52300678 | 52296871 | ID=Msa0169170;Name=Msa0169170 |
| chr1_4 | mRNA | 52296871 | 52300678 | 52296871 | ID=Msa0169170-mRNA-1;Parent=Msa0169170;Name=Msa0169170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=284|1|1|1|1|1|4|270|418 |
| chr1_4 | exon | 52296871 | 52297331 | 52296871 | ID=Msa0169170-mRNA-1:exon:15506;Parent=Msa0169170-mRNA-1 |
| chr1_4 | exon | 52297773 | 52298049 | 52297773 | ID=Msa0169170-mRNA-1:exon:15505;Parent=Msa0169170-mRNA-1 |
| chr1_4 | exon | 52298916 | 52299264 | 52298916 | ID=Msa0169170-mRNA-1:exon:15504;Parent=Msa0169170-mRNA-1 |
| chr1_4 | exon | 52299955 | 52300678 | 52299955 | ID=Msa0169170-mRNA-1:exon:15503;Parent=Msa0169170-mRNA-1 |
| chr1_4 | five_prime_UTR | 52300395 | 52300678 | 52300395 | ID=Msa0169170-mRNA-1:five_prime_utr;Parent=Msa0169170-mRNA-1 |
| chr1_4 | CDS | 52299955 | 52300394 | 52299955 | ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1 |
| chr1_4 | CDS | 52298916 | 52299264 | 52298916 | ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1 |
| chr1_4 | CDS | 52297773 | 52298049 | 52297773 | ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1 |
| chr1_4 | CDS | 52297141 | 52297331 | 52297141 | ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1 |
| chr1_4 | three_prime_UTR | 52296871 | 52297140 | 52296871 | ID=Msa0169170-mRNA-1:three_prime_utr;Parent=Msa0169170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
