AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0169170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169170 MtrunA17_Chr1g0185861 99.760 417 1 0 1 417 1 417 0.0 868
Msa0169170 MtrunA17_Chr7g0259501 88.647 414 43 1 1 414 1 410 0.0 732
Msa0169170 MtrunA17_Chr5g0440341 57.545 391 149 6 33 413 23 406 7.91e-155 443
Msa0169170 MtrunA17_Chr7g0254001 56.883 385 158 4 36 415 13 394 1.15e-144 418
Msa0169170 MtrunA17_Chr4g0002921 60.335 179 71 0 39 217 23 201 7.43e-71 227
Msa0169170 MtrunA17_Chr3g0112351 59.140 93 38 0 262 354 6 98 5.22e-32 117
Msa0169170 MtrunA17_Chr1g0205751 31.098 164 89 4 191 348 519 664 1.65e-15 78.6
Msa0169170 MtrunA17_Chr5g0394261 30.435 161 94 3 191 348 516 661 2.50e-14 75.1
Msa0169170 MtrunA17_Chr7g0259851 28.395 162 96 4 191 348 506 651 1.38e-13 72.8
Msa0169170 MtrunA17_Chr3g0125321 27.568 185 113 5 205 383 74 243 1.18e-12 67.8
Msa0169170 MtrunA17_Chr3g0103031 28.289 152 94 3 201 350 155 293 1.57e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0169170 AT3G06190.1 72.616 409 108 1 7 415 2 406 0.0 626
Msa0169170 AT5G19000.1 72.872 376 102 0 40 415 32 407 0.0 593
Msa0169170 AT5G19000.3 72.872 376 102 0 40 415 32 407 0.0 593
Msa0169170 AT5G19000.2 66.667 411 102 1 40 415 32 442 0.0 577
Msa0169170 AT3G06190.5 72.857 350 91 1 7 356 2 347 0.0 540
Msa0169170 AT2G39760.1 60.674 356 139 1 27 382 11 365 1.84e-164 468
Msa0169170 AT3G03740.1 60.548 365 133 4 22 382 31 388 4.39e-153 441
Msa0169170 AT2G39760.4 60.976 328 127 1 27 354 11 337 4.67e-151 432
Msa0169170 AT2G39760.3 60.976 328 127 1 27 354 11 337 4.67e-151 432
Msa0169170 AT2G39760.2 60.976 328 127 1 27 354 11 337 6.98e-151 431
Msa0169170 AT3G43700.1 53.171 410 176 7 16 413 8 413 8.11e-146 421
Msa0169170 AT5G21010.1 52.068 411 181 6 15 413 2 408 5.21e-142 411
Msa0169170 AT3G43700.2 55.807 353 143 6 16 359 8 356 3.06e-134 390
Msa0169170 AT3G43700.3 56.609 348 138 6 16 354 8 351 5.10e-134 389
Msa0169170 AT3G06190.3 65.529 293 90 3 7 292 2 290 2.55e-133 385
Msa0169170 AT3G06190.4 71.538 260 70 1 7 266 2 257 6.33e-133 384
Msa0169170 AT3G06190.2 70.866 254 70 1 7 260 2 251 2.33e-126 367
Msa0169170 AT3G06190.2 59.649 57 23 0 359 415 239 295 1.55e-13 71.2
Msa0169170 AT5G19330.1 29.193 161 96 3 191 348 521 666 7.60e-16 80.1
Msa0169170 AT5G13060.1 26.368 201 133 3 189 388 546 732 3.54e-14 75.1

Find 126 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTAAGACAGTTATCTTTA+AGG 0.101359 1_4:+52299194 None:intergenic
ACCTTCTCGTGGCTCTCTTA+TGG 0.177023 1_4:-52300391 Msa0169170:exon
AGGTGAATTGGGGTGAAATT+AGG 0.213084 1_4:+52300410 None:intergenic
CATTGCTGCATGTTATATAT+TGG 0.221491 1_4:-52298026 Msa0169170:CDS
CTCTCAAAAGGGATTGGAAT+TGG 0.250201 1_4:-52300216 Msa0169170:CDS
CCTTCTCGTGGCTCTCTTAT+GGG 0.253416 1_4:-52300390 Msa0169170:exon
ATCGAGAAAAGGTGGGATTT+TGG 0.261853 1_4:+52300492 None:intergenic
TTACTGGGATTAACTCAAAA+TGG 0.277584 1_4:-52297978 Msa0169170:CDS
TCTACTATTGGTCACCAGTT+TGG 0.278284 1_4:-52299100 Msa0169170:CDS
TCACCAGTTTGGGAAGCTTT+TGG 0.292881 1_4:-52299089 Msa0169170:CDS
CAAACCCGATCTGTGGGAAT+TGG 0.317482 1_4:+52300451 None:intergenic
GAAATTCTAGGGTTTGGATT+TGG 0.318479 1_4:+52300543 None:intergenic
TCTATGGATGGTGGTGATAA+AGG 0.322258 1_4:+52300600 None:intergenic
CCTGACATGCAAGAGCTTAC+TGG 0.322826 1_4:-52297994 Msa0169170:CDS
CGAGTGAAGGGACTGATGTT+AGG 0.326194 1_4:-52300074 Msa0169170:CDS
CCAATATCACCTTCTACTAT+TGG 0.326476 1_4:-52299112 Msa0169170:CDS
CTACTATTGGTCACCAGTTT+GGG 0.329635 1_4:-52299099 Msa0169170:CDS
AACATGTTTGGTGGTGTTGC+AGG 0.335857 1_4:-52296981 Msa0169170:three_prime_UTR
AAGATGGAAATTCTAGGGTT+TGG 0.343948 1_4:+52300537 None:intergenic
GAACCTATGTGAGCCTTTGA+TGG 0.352408 1_4:+52300257 None:intergenic
CCACGATATTTCAACGTATA+AGG 0.352677 1_4:+52299964 None:intergenic
ATTGCTGCATGTTATATATT+GGG 0.354568 1_4:-52298025 Msa0169170:CDS
ATTGGAATCGAAAATGTTCT+AGG 0.357925 1_4:+52299130 None:intergenic
CATCAGCCTAAGTCTATCTA+AGG 0.367304 1_4:+52297906 None:intergenic
GGTGAATTGGGGTGAAATTA+GGG 0.368343 1_4:+52300411 None:intergenic
CTTGATGGCAGTGATGTAAA+TGG 0.372844 1_4:-52297178 Msa0169170:CDS
ATTATTTAAACCTTGAAAAC+AGG 0.377554 1_4:+52298905 None:intergenic
CCAATAGTAGAAGGTGATAT+TGG 0.380995 1_4:+52299112 None:intergenic
CCAGTAAGCTCTTGCATGTC+AGG 0.381423 1_4:+52297994 None:intergenic
TTTCCAAAAGCTTCCCAAAC+TGG 0.384496 1_4:+52299086 None:intergenic
GAGCCACGAGAAGGTGAATT+GGG 0.389741 1_4:+52300399 None:intergenic
TCACATAGGTTCAAGATAAC+GGG 0.392891 1_4:-52300246 Msa0169170:CDS
GTGAGTGGAACAGGGTTCTC+TGG 0.404158 1_4:+52297110 None:intergenic
CGTGGCTACAACTTTAGCTT+TGG 0.416152 1_4:-52297845 Msa0169170:CDS
AAACCCGATCTGTGGGAATT+GGG 0.422740 1_4:+52300452 None:intergenic
AGAGCCACGAGAAGGTGAAT+TGG 0.423876 1_4:+52300398 None:intergenic
AATTTGAAGATGGAAATTCT+AGG 0.423952 1_4:+52300531 None:intergenic
TCTCAAAAGGGATTGGAATT+GGG 0.424168 1_4:-52300215 Msa0169170:CDS
GATGTTGAGGAGGTTGTTGA+TGG 0.428183 1_4:+52300291 None:intergenic
GGGAGACGATCAACATTCAT+AGG 0.432133 1_4:-52297057 Msa0169170:three_prime_UTR
GGCTAGATTTACTGAGCATT+CGG 0.434481 1_4:-52297233 Msa0169170:CDS
CACCGTTGGTGGGTACGAAT+GGG 0.437086 1_4:-52300169 Msa0169170:CDS
TCACCGTTGGTGGGTACGAA+TGG 0.438080 1_4:-52300170 Msa0169170:CDS
ACGGGGTATTCACTCTCAAA+AGG 0.441675 1_4:-52300228 Msa0169170:CDS
TCAAACAGACTGCTTTCAGC+TGG 0.445729 1_4:+52297803 None:intergenic
TTCATCGCGCTTGCGAGTGA+AGG 0.449539 1_4:-52300087 Msa0169170:CDS
CTCACATAGGTTCAAGATAA+CGG 0.449878 1_4:-52300247 Msa0169170:CDS
AAAATGGGCAACTACCTTGA+TGG 0.450276 1_4:-52297962 Msa0169170:CDS
AGTTGATGTGTCACGCGCTA+TGG 0.456519 1_4:+52300625 None:intergenic
CTGACATGCAAGAGCTTACT+GGG 0.457209 1_4:-52297993 Msa0169170:CDS
TGATGGTTTCGAGTACTTGA+AGG 0.459553 1_4:-52297296 Msa0169170:CDS
TGTGTGTTCTGATCTTTCAT+AGG 0.465282 1_4:+52298956 None:intergenic
TTACAGTGAACCGTGGATAG+AGG 0.466244 1_4:-52297078 Msa0169170:three_prime_UTR
GATCCCAATTCCCACAGATC+GGG 0.475040 1_4:-52300455 Msa0169170:five_prime_UTR
AGATGTAAATGTAACATGTT+TGG 0.478541 1_4:-52296993 Msa0169170:three_prime_UTR
TATTCACTCTCAAAAGGGAT+TGG 0.480986 1_4:-52300222 Msa0169170:CDS
AACTGGTGACCAATAGTAGA+AGG 0.481007 1_4:+52299103 None:intergenic
GAGGTTGTTGATGGAATTGA+GGG 0.492292 1_4:+52300300 None:intergenic
ATTTGAAGATGGAAATTCTA+GGG 0.505255 1_4:+52300532 None:intergenic
GAGTGAAGGGACTGATGTTA+GGG 0.509324 1_4:-52300073 Msa0169170:CDS
CTTCGTTCCTATGCTTGCAC+AGG 0.511010 1_4:+52297206 None:intergenic
CGATCTGTGGGAATTGGGAT+CGG 0.513021 1_4:+52300457 None:intergenic
AGATGATGATGATGAATTTG+AGG 0.513479 1_4:+52300338 None:intergenic
GATCTGTGGGAATTGGGATC+GGG 0.513803 1_4:+52300458 None:intergenic
TGAGAATCTTTATCGAGAAA+AGG 0.513809 1_4:+52300481 None:intergenic
GGAGGTTGTTGATGGAATTG+AGG 0.515360 1_4:+52300299 None:intergenic
CACCCCAATTCACCTTCTCG+TGG 0.518341 1_4:-52300402 Msa0169170:five_prime_UTR
ATCTGCTAGCAGCAGCTGAT+CGG 0.518356 1_4:-52297933 Msa0169170:CDS
TACTGGGATTAACTCAAAAT+GGG 0.520060 1_4:-52297977 Msa0169170:CDS
CGGGGTATTCACTCTCAAAA+GGG 0.521264 1_4:-52300227 Msa0169170:CDS
CGATCCCAATTCCCACAGAT+CGG 0.522484 1_4:-52300456 Msa0169170:five_prime_UTR
TCATCGCGCTTGCGAGTGAA+GGG 0.522765 1_4:-52300086 Msa0169170:CDS
AATATAGGGGAATTTGAAGA+TGG 0.524378 1_4:+52300521 None:intergenic
TCTGTTTGAAATTCATTGCA+AGG 0.524584 1_4:-52297789 Msa0169170:CDS
AAAAGCTCAGTCAAAACAGA+TGG 0.526627 1_4:+52297265 None:intergenic
AACAGGGTTCTCTGGAGACC+TGG 0.530076 1_4:+52297118 None:intergenic
CTTAGTGTTAATTGTAGCGT+TGG 0.538942 1_4:-52299178 Msa0169170:CDS
TACAGTGAACCGTGGATAGA+GGG 0.541214 1_4:-52297077 Msa0169170:three_prime_UTR
GATGGAATTGAGGGTGGTGA+TGG 0.542993 1_4:+52300309 None:intergenic
GTTGCAGGTTTGTCTTCGAT+AGG 0.543065 1_4:-52296966 Msa0169170:three_prime_UTR
AGGAACGAAGCAATACTTGA+TGG 0.545226 1_4:-52297193 Msa0169170:CDS
GAGTGGGAAAGAGAGGCATA+AGG 0.552695 1_4:-52300022 Msa0169170:CDS
CTGCTTTCAGCTGGAAACAA+TGG 0.557661 1_4:+52297812 None:intergenic
TGGATCAGAGTGGGAAAGAG+AGG 0.559531 1_4:-52300029 Msa0169170:CDS
TAGCAGATGCTGAGCCATCA+AGG 0.560135 1_4:+52297948 None:intergenic
CAGAATTCAAACCCGATCTG+TGG 0.571511 1_4:+52300444 None:intergenic
GAATCTTTATCGAGAAAAGG+TGG 0.572216 1_4:+52300484 None:intergenic
TTGGAATCGAAAATGTTCTA+GGG 0.573539 1_4:+52299131 None:intergenic
AATGGAAGAAAATCTATGGA+TGG 0.576433 1_4:+52300588 None:intergenic
TTTGATAGGACGTTGGAGAG+TGG 0.581385 1_4:-52299988 Msa0169170:CDS
CGGACTTCCTGTGCAAGCAT+AGG 0.582301 1_4:-52297213 Msa0169170:CDS
ACGCGCTATGGACTTGCGCG+TGG 0.582317 1_4:+52300637 None:intergenic
ATGTGAGCCTTTGATGGTGT+CGG 0.584850 1_4:+52300263 None:intergenic
GTTGTTGATGGAATTGAGGG+TGG 0.596454 1_4:+52300303 None:intergenic
TGAAATATCGTGGTAGCATG+TGG 0.600425 1_4:-52299954 Msa0169170:intron
TCGATAACCGACACCATCAA+AGG 0.601387 1_4:-52300270 Msa0169170:CDS
CAAAGCTAAAGTTGTAGCCA+CGG 0.605118 1_4:+52297846 None:intergenic
TCAGCTGTGATGCAAACTGA+TGG 0.605667 1_4:-52297313 Msa0169170:intron
AATCTTTATCGAGAAAAGGT+GGG 0.605946 1_4:+52300485 None:intergenic
AGAATTCAAACCCGATCTGT+GGG 0.606842 1_4:+52300445 None:intergenic
ATTGTAGCGTTGGTGTTGTG+AGG 0.611297 1_4:-52299168 Msa0169170:CDS
TGTAAATGTAACATGTTTGG+TGG 0.611863 1_4:-52296990 Msa0169170:three_prime_UTR
CAGTGATGTAAATGGAAGGC+GGG 0.613054 1_4:-52297170 Msa0169170:CDS
CGCCCATTCGTACCCACCAA+CGG 0.616095 1_4:+52300167 None:intergenic
TGATCGTCTCCCTCTATCCA+CGG 0.618152 1_4:+52297068 None:intergenic
CCCATAAGAGAGCCACGAGA+AGG 0.621474 1_4:+52300390 None:intergenic
GATGATGATGAATTTGAGGA+TGG 0.626655 1_4:+52300342 None:intergenic
CCTTATACGTTGAAATATCG+TGG 0.627057 1_4:-52299964 Msa0169170:CDS
AAAGCTCAGTCAAAACAGAT+GGG 0.629546 1_4:+52297266 None:intergenic
TATAAAAGTTGAAGATATCG+AGG 0.632506 1_4:-52298930 Msa0169170:CDS
ACACCATCAAAGGCTCACAT+AGG 0.632820 1_4:-52300260 Msa0169170:CDS
GTCGGTTATCGATGTTGAGG+AGG 0.637096 1_4:+52300281 None:intergenic
GTTGTGAGGTCACACACAGA+GGG 0.645126 1_4:-52299154 Msa0169170:CDS
GGTATGCCTTAGATAGACTT+AGG 0.647862 1_4:-52297912 Msa0169170:CDS
GGAAGAAAATCTATGGATGG+TGG 0.652202 1_4:+52300591 None:intergenic
CACATAGGTTCAAGATAACG+GGG 0.658135 1_4:-52300245 Msa0169170:CDS
AGCCACGAGAAGGTGAATTG+GGG 0.664711 1_4:+52300400 None:intergenic
CCCTGATGGGAAAAGCGTGG+AGG 0.667337 1_4:-52300133 Msa0169170:CDS
TTACCCTGATGGGAAAAGCG+TGG 0.670712 1_4:-52300136 Msa0169170:CDS
ATGGCAGTGATGTAAATGGA+AGG 0.702793 1_4:-52297174 Msa0169170:CDS
AGATGTTGCAATAAATACCG+TGG 0.705274 1_4:-52297863 Msa0169170:CDS
GCAGTGATGTAAATGGAAGG+CGG 0.707656 1_4:-52297171 Msa0169170:CDS
GGTGTCGGTTATCGATGTTG+AGG 0.707765 1_4:+52300278 None:intergenic
TGTTGTGAGGTCACACACAG+AGG 0.714300 1_4:-52299155 Msa0169170:CDS
GCAAGGCCTGAAAATCTCAG+AGG 0.724609 1_4:-52297772 Msa0169170:intron
AGATTCTTCGAGAAACAACG+AGG 0.757753 1_4:-52300365 Msa0169170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGAAAGATGAAAATT+TGG - chr1_4:52297855-52297874 Msa0169170:CDS 15.0%
!! ATGCTTAACAATTATAATAA+GGG + chr1_4:52298782-52298801 None:intergenic 15.0%
!! TATGCTTAACAATTATAATA+AGG + chr1_4:52298783-52298802 None:intergenic 15.0%
!!! AATGTTGATAAAAAAAATAG+AGG + chr1_4:52299046-52299065 None:intergenic 15.0%
!! TCAAAATAGAGAAAAAAATA+TGG + chr1_4:52299478-52299497 None:intergenic 15.0%
!!! TATTTTTTTCTCTATTTTGA+AGG - chr1_4:52299478-52299497 Msa0169170:intron 15.0%
!! AAAAAATGGAAGAAAATCTA+TGG + chr1_4:52296946-52296965 None:intergenic 20.0%
!! AGAAGAGATAAATGAAAAAA+TGG + chr1_4:52296960-52296979 None:intergenic 20.0%
!!! ATTACTTTGAGTTATTTAAG+GGG + chr1_4:52298097-52298116 None:intergenic 20.0%
!!! CATTACTTTGAGTTATTTAA+GGG + chr1_4:52298098-52298117 None:intergenic 20.0%
!!! ATTGTTTTAAATTGTGTTTC+AGG - chr1_4:52298263-52298282 Msa0169170:intron 20.0%
!!! TTGTTTTAAATTGTGTTTCA+GGG - chr1_4:52298264-52298283 Msa0169170:intron 20.0%
!! ATTATTTAAACCTTGAAAAC+AGG + chr1_4:52298625-52298644 None:intergenic 20.0%
!! TGCTTAACAATTATAATAAG+GGG + chr1_4:52298781-52298800 None:intergenic 20.0%
!! AGAACACAACAATAAAAATA+TGG - chr1_4:52299003-52299022 Msa0169170:CDS 20.0%
!! TCTTTATACCAATTAACATT+TGG + chr1_4:52299098-52299117 None:intergenic 20.0%
!! TAAAGGAAATAAAATCAGAA+AGG + chr1_4:52299246-52299265 None:intergenic 20.0%
!!! ATTTTATTTCCTTTATTGCT+TGG - chr1_4:52299251-52299270 Msa0169170:intron 20.0%
!! TCTAATTCTTATTAAACCAT+TGG - chr1_4:52299306-52299325 Msa0169170:intron 20.0%
!! AGAAAAATATGTGCAATATT+AGG - chr1_4:52299827-52299846 Msa0169170:intron 20.0%
!! GAAAAATATGTGCAATATTA+GGG - chr1_4:52299828-52299847 Msa0169170:intron 20.0%
!! AAAAATATGTGCAATATTAG+GGG - chr1_4:52299829-52299848 Msa0169170:intron 20.0%
!!! GTTCTTAAACTCTTTTAATT+AGG - chr1_4:52300044-52300063 Msa0169170:CDS 20.0%
! ATTTGAAGATGGAAATTCTA+GGG + chr1_4:52296998-52297017 None:intergenic 25.0%
! AATTTGAAGATGGAAATTCT+AGG + chr1_4:52296999-52297018 None:intergenic 25.0%
!!! ATTTTGGTGAGAAAATATAG+GGG + chr1_4:52297022-52297041 None:intergenic 25.0%
!!! GATTTTGGTGAGAAAATATA+GGG + chr1_4:52297023-52297042 None:intergenic 25.0%
!!! AAACGTTTGATTCGTTTTTT+GGG - chr1_4:52298031-52298050 Msa0169170:intron 25.0%
!! CCATTACTTTGAGTTATTTA+AGG + chr1_4:52298099-52298118 None:intergenic 25.0%
! CCTTAAATAACTCAAAGTAA+TGG - chr1_4:52298096-52298115 Msa0169170:intron 25.0%
! AATCAACAAATCCATTCAAT+GGG + chr1_4:52298159-52298178 None:intergenic 25.0%
! AAATCAACAAATCCATTCAA+TGG + chr1_4:52298160-52298179 None:intergenic 25.0%
!!! TTGAATGGATTTGTTGATTT+TGG - chr1_4:52298160-52298179 Msa0169170:intron 25.0%
!!! TGTTTTAAATTGTGTTTCAG+GGG - chr1_4:52298265-52298284 Msa0169170:intron 25.0%
! TATAAAAGTTGAAGATATCG+AGG - chr1_4:52298597-52298616 Msa0169170:intron 25.0%
! ACATGTTTGCAAAAAAACAT+TGG - chr1_4:52298869-52298888 Msa0169170:intron 25.0%
! TTATACCAATTAACATTTGG+AGG + chr1_4:52299095-52299114 None:intergenic 25.0%
! ATGTTAATTGGTATAAAGAC+TGG - chr1_4:52299099-52299118 Msa0169170:CDS 25.0%
! AATTTATACAAGAACTTGTG+GGG + chr1_4:52299200-52299219 None:intergenic 25.0%
! CAATTTATACAAGAACTTGT+GGG + chr1_4:52299201-52299220 None:intergenic 25.0%
! TCAATTTATACAAGAACTTG+TGG + chr1_4:52299202-52299221 None:intergenic 25.0%
! GAAGTTTAATAACATGCATA+TGG - chr1_4:52299425-52299444 Msa0169170:intron 25.0%
! ATTGCTGCATGTTATATATT+GGG - chr1_4:52299502-52299521 Msa0169170:intron 25.0%
!! AATACTTCAGTTGATATCAT+AGG + chr1_4:52300176-52300195 None:intergenic 25.0%
! AGATGTAAATGTAACATGTT+TGG - chr1_4:52300534-52300553 Msa0169170:five_prime_UTR 25.0%
! CGTGGATTTTATAGTTGAAT+TGG + chr1_4:52296875-52296894 None:intergenic 30.0%
AATGGAAGAAAATCTATGGA+TGG + chr1_4:52296942-52296961 None:intergenic 30.0%
AATATAGGGGAATTTGAAGA+TGG + chr1_4:52297009-52297028 None:intergenic 30.0%
!! GGATTTTGGTGAGAAAATAT+AGG + chr1_4:52297024-52297043 None:intergenic 30.0%
AATCTTTATCGAGAAAAGGT+GGG + chr1_4:52297045-52297064 None:intergenic 30.0%
TGAGAATCTTTATCGAGAAA+AGG + chr1_4:52297049-52297068 None:intergenic 30.0%
! AGATGATGATGATGAATTTG+AGG + chr1_4:52297192-52297211 None:intergenic 30.0%
!!! CGATTTATTTTTACCCTGAT+GGG - chr1_4:52297381-52297400 Msa0169170:intron 30.0%
! GCTTTTTGAATTAACGCTTT+TGG - chr1_4:52297478-52297497 Msa0169170:intron 30.0%
!! AGGTTCATAGTCATTTTGAT+AGG - chr1_4:52297525-52297544 Msa0169170:intron 30.0%
TGATTCTAATTCCTTATCGA+GGG - chr1_4:52297664-52297683 Msa0169170:intron 30.0%
! GGAATGATAGGAATTTTTAC+TGG - chr1_4:52297785-52297804 Msa0169170:CDS 30.0%
TTACATACTTATGCTTCTGT+GGG - chr1_4:52297816-52297835 Msa0169170:CDS 30.0%
TTCTGAACATTGTTGGAAAA+GGG - chr1_4:52297921-52297940 Msa0169170:CDS 30.0%
!!! CAAACGTTTGATTCGTTTTT+TGG - chr1_4:52298030-52298049 Msa0169170:CDS 30.0%
!!! AACGTTTGATTCGTTTTTTG+GGG - chr1_4:52298032-52298051 Msa0169170:intron 30.0%
ATAGTCTAACTTCAAAACCA+AGG + chr1_4:52298074-52298093 None:intergenic 30.0%
!!! TGGATTTGTTGATTTTGGTT+TGG - chr1_4:52298165-52298184 Msa0169170:intron 30.0%
!!! ATGGAACTTTTTTGTGACAA+TGG - chr1_4:52298215-52298234 Msa0169170:intron 30.0%
CACTAAGACAGTTATCTTTA+AGG + chr1_4:52298336-52298355 None:intergenic 30.0%
TTGGAATCGAAAATGTTCTA+GGG + chr1_4:52298399-52298418 None:intergenic 30.0%
ATTGGAATCGAAAATGTTCT+AGG + chr1_4:52298400-52298419 None:intergenic 30.0%
!!! GATGTGAATTTTGAAGTGAA+TGG - chr1_4:52298478-52298497 Msa0169170:intron 30.0%
! AGTGAATGGTGAAATTTTTG+CGG - chr1_4:52298492-52298511 Msa0169170:intron 30.0%
! AATTTTTGCGGCTCATAAAT+TGG - chr1_4:52298504-52298523 Msa0169170:intron 30.0%
CGAAGTTCAATATCTATATC+AGG + chr1_4:52298740-52298759 None:intergenic 30.0%
TTATGCCTCCAAATGTTAAT+TGG - chr1_4:52299087-52299106 Msa0169170:CDS 30.0%
!!! ACTGGTATTTTTTCAGATTG+AGG - chr1_4:52299117-52299136 Msa0169170:CDS 30.0%
ACTTGTGTTTAATGTGTTTG+TGG - chr1_4:52299383-52299402 Msa0169170:intron 30.0%
CATTGCTGCATGTTATATAT+TGG - chr1_4:52299501-52299520 Msa0169170:intron 30.0%
TTACTGGGATTAACTCAAAA+TGG - chr1_4:52299549-52299568 Msa0169170:intron 30.0%
TACTGGGATTAACTCAAAAT+GGG - chr1_4:52299550-52299569 Msa0169170:intron 30.0%
! TCTGTTTGAAATTCATTGCA+AGG - chr1_4:52299738-52299757 Msa0169170:intron 30.0%
! CGTATGCTTATGCTTTATTA+AGG - chr1_4:52299941-52299960 Msa0169170:intron 30.0%
AAATCAAGCTTAGTGACTTT+GGG - chr1_4:52300002-52300021 Msa0169170:CDS 30.0%
AATTAGGATGCTGTATATGA+TGG - chr1_4:52300060-52300079 Msa0169170:CDS 30.0%
TACAAATTTACCAACGCTTT+GGG + chr1_4:52300100-52300119 None:intergenic 30.0%
ATACAAATTTACCAACGCTT+TGG + chr1_4:52300101-52300120 None:intergenic 30.0%
TCACAGCTGAAAAAAAGAAA+GGG + chr1_4:52300204-52300223 None:intergenic 30.0%
ATCACAGCTGAAAAAAAGAA+AGG + chr1_4:52300205-52300224 None:intergenic 30.0%
! CTGTAATTTTTGAATGTGAG+TGG + chr1_4:52300435-52300454 None:intergenic 30.0%
TGTAAATGTAACATGTTTGG+TGG - chr1_4:52300537-52300556 Msa0169170:five_prime_UTR 30.0%
!! GAAATTCTAGGGTTTGGATT+TGG + chr1_4:52296987-52297006 None:intergenic 35.0%
!! AAGATGGAAATTCTAGGGTT+TGG + chr1_4:52296993-52297012 None:intergenic 35.0%
GAATCTTTATCGAGAAAAGG+TGG + chr1_4:52297046-52297065 None:intergenic 35.0%
! GATGATGATGAATTTGAGGA+TGG + chr1_4:52297188-52297207 None:intergenic 35.0%
CTCACATAGGTTCAAGATAA+CGG - chr1_4:52297280-52297299 Msa0169170:CDS 35.0%
TCACATAGGTTCAAGATAAC+GGG - chr1_4:52297281-52297300 Msa0169170:CDS 35.0%
TATTCACTCTCAAAAGGGAT+TGG - chr1_4:52297305-52297324 Msa0169170:CDS 35.0%
TCTCAAAAGGGATTGGAATT+GGG - chr1_4:52297312-52297331 Msa0169170:CDS 35.0%
!!! GCGATTTATTTTTACCCTGA+TGG - chr1_4:52297380-52297399 Msa0169170:intron 35.0%
!! TAGTCATTTTGATAGGACGT+TGG - chr1_4:52297532-52297551 Msa0169170:intron 35.0%
CCACGATATTTCAACGTATA+AGG + chr1_4:52297566-52297585 None:intergenic 35.0%
CCTTATACGTTGAAATATCG+TGG - chr1_4:52297563-52297582 Msa0169170:intron 35.0%
CTGATTCTAATTCCTTATCG+AGG - chr1_4:52297663-52297682 Msa0169170:intron 35.0%
TGTTTGTGAAGGTTTAAGCT+TGG - chr1_4:52297690-52297709 Msa0169170:intron 35.0%
TTCTTGAATTGACCCAATGT+TGG - chr1_4:52297756-52297775 Msa0169170:intron 35.0%
CATTCCAAGTTACCAACATT+GGG + chr1_4:52297771-52297790 None:intergenic 35.0%
TCATTCCAAGTTACCAACAT+TGG + chr1_4:52297772-52297791 None:intergenic 35.0%
!! TGTTGGTAACTTGGAATGAT+AGG - chr1_4:52297773-52297792 Msa0169170:CDS 35.0%
GTTACATACTTATGCTTCTG+TGG - chr1_4:52297815-52297834 Msa0169170:CDS 35.0%
! TGAAGTGTTCTGAACATTGT+TGG - chr1_4:52297914-52297933 Msa0169170:CDS 35.0%
! GTTCTGAACATTGTTGGAAA+AGG - chr1_4:52297920-52297939 Msa0169170:CDS 35.0%
TCTGAACATTGTTGGAAAAG+GGG - chr1_4:52297922-52297941 Msa0169170:CDS 35.0%
!!! ACGTTTGATTCGTTTTTTGG+GGG - chr1_4:52298033-52298052 Msa0169170:intron 35.0%
!!! CTTTTTTGTGACAATGGAAG+AGG - chr1_4:52298221-52298240 Msa0169170:intron 35.0%
!! GAAGAGGTACAGTTTTCTAA+AGG - chr1_4:52298237-52298256 Msa0169170:intron 35.0%
CTTAGTGTTAATTGTAGCGT+TGG - chr1_4:52298349-52298368 Msa0169170:intron 35.0%
CCAATAGTAGAAGGTGATAT+TGG + chr1_4:52298418-52298437 None:intergenic 35.0%
CCAATATCACCTTCTACTAT+TGG - chr1_4:52298415-52298434 Msa0169170:intron 35.0%
!! AAAAGCTGAGCTCTAAAAAC+AGG + chr1_4:52298547-52298566 None:intergenic 35.0%
!!! GTTTTTAGAGCTCAGCTTTT+TGG - chr1_4:52298547-52298566 Msa0169170:intron 35.0%
TGTGTGTTCTGATCTTTCAT+AGG + chr1_4:52298574-52298593 None:intergenic 35.0%
ATATCAGGACAGAGACAAAA+AGG + chr1_4:52298725-52298744 None:intergenic 35.0%
ATATACTCGCAAATTGCAAC+TGG + chr1_4:52298941-52298960 None:intergenic 35.0%
TTGCGAGTATATTTGACTGT+TGG - chr1_4:52298949-52298968 Msa0169170:CDS 35.0%
! ACATTTGGAGGCATAAATGA+GGG + chr1_4:52299083-52299102 None:intergenic 35.0%
! AACATTTGGAGGCATAAATG+AGG + chr1_4:52299084-52299103 None:intergenic 35.0%
AAACAGGAACCAAGCAATAA+AGG + chr1_4:52299263-52299282 None:intergenic 35.0%
AGATGTTGCAATAAATACCG+TGG - chr1_4:52299664-52299683 Msa0169170:intron 35.0%
ATGTGCAATATTAGGGGAAT+TGG - chr1_4:52299835-52299854 Msa0169170:intron 35.0%
TGTGCAATATTAGGGGAATT+GGG - chr1_4:52299836-52299855 Msa0169170:intron 35.0%
ATAGCAACATACAGACTTTC+AGG + chr1_4:52299873-52299892 None:intergenic 35.0%
CAAATCAAGCTTAGTGACTT+TGG - chr1_4:52300001-52300020 Msa0169170:CDS 35.0%
GGTCTGGATGAAGAATAAAT+AGG + chr1_4:52300155-52300174 None:intergenic 35.0%
! TTCAGTTGATATCATAGGTC+TGG + chr1_4:52300171-52300190 None:intergenic 35.0%
AAAGCTCAGTCAAAACAGAT+GGG + chr1_4:52300264-52300283 None:intergenic 35.0%
AAAAGCTCAGTCAAAACAGA+TGG + chr1_4:52300265-52300284 None:intergenic 35.0%
!!! ATCTGTTTTGACTGAGCTTT+TGG - chr1_4:52300264-52300283 Msa0169170:CDS 35.0%
CTATACTGTGAAAAATGACC+AGG - chr1_4:52300391-52300410 Msa0169170:exon 35.0%
! TTTTGAATGTGAGTGGAACA+GGG + chr1_4:52300428-52300447 None:intergenic 35.0%
! TTTTTGAATGTGAGTGGAAC+AGG + chr1_4:52300429-52300448 None:intergenic 35.0%
TCAAAAATTACAGTGAACCG+TGG - chr1_4:52300442-52300461 Msa0169170:five_prime_UTR 35.0%
! TCTATGGATGGTGGTGATAA+AGG + chr1_4:52296930-52296949 None:intergenic 40.0%
GGAAGAAAATCTATGGATGG+TGG + chr1_4:52296939-52296958 None:intergenic 40.0%
! ATCGAGAAAAGGTGGGATTT+TGG + chr1_4:52297038-52297057 None:intergenic 40.0%
AGAATTCAAACCCGATCTGT+GGG + chr1_4:52297085-52297104 None:intergenic 40.0%
GGTGAATTGGGGTGAAATTA+GGG + chr1_4:52297119-52297138 None:intergenic 40.0%
AGGTGAATTGGGGTGAAATT+AGG + chr1_4:52297120-52297139 None:intergenic 40.0%
AGATTCTTCGAGAAACAACG+AGG - chr1_4:52297162-52297181 Msa0169170:CDS 40.0%
! GAGGTTGTTGATGGAATTGA+GGG + chr1_4:52297230-52297249 None:intergenic 40.0%
CACATAGGTTCAAGATAACG+GGG - chr1_4:52297282-52297301 Msa0169170:CDS 40.0%
CTCTCAAAAGGGATTGGAAT+TGG - chr1_4:52297311-52297330 Msa0169170:CDS 40.0%
! TTAACGCTTTTGGATCAGAG+TGG - chr1_4:52297488-52297507 Msa0169170:intron 40.0%
! TAACGCTTTTGGATCAGAGT+GGG - chr1_4:52297489-52297508 Msa0169170:intron 40.0%
TGAAATATCGTGGTAGCATG+TGG - chr1_4:52297573-52297592 Msa0169170:intron 40.0%
TTGTGAAGGTTTAAGCTTGG+TGG - chr1_4:52297693-52297712 Msa0169170:intron 40.0%
TGTGAAGGTTTAAGCTTGGT+GGG - chr1_4:52297694-52297713 Msa0169170:intron 40.0%
!! TTGACCCAATGTTGGTAACT+TGG - chr1_4:52297764-52297783 Msa0169170:intron 40.0%
CTGAACATTGTTGGAAAAGG+GGG - chr1_4:52297923-52297942 Msa0169170:CDS 40.0%
TGAACATTGTTGGAAAAGGG+GGG - chr1_4:52297924-52297943 Msa0169170:CDS 40.0%
!!! TTTGATTCGTTTTTTGGGGG+TGG - chr1_4:52298036-52298055 Msa0169170:intron 40.0%
!!! TTGATTCGTTTTTTGGGGGT+GGG - chr1_4:52298037-52298056 Msa0169170:intron 40.0%
!! GTTTGTTGTCTCCCATTGAA+TGG - chr1_4:52298145-52298164 Msa0169170:intron 40.0%
TTCCTGCTGAATTGAGTTCA+TGG - chr1_4:52298196-52298215 Msa0169170:intron 40.0%
TTCCATGAACTCAATTCAGC+AGG + chr1_4:52298201-52298220 None:intergenic 40.0%
AACTGGTGACCAATAGTAGA+AGG + chr1_4:52298427-52298446 None:intergenic 40.0%
TCTACTATTGGTCACCAGTT+TGG - chr1_4:52298427-52298446 Msa0169170:intron 40.0%
CTACTATTGGTCACCAGTTT+GGG - chr1_4:52298428-52298447 Msa0169170:intron 40.0%
TTTCCAAAAGCTTCCCAAAC+TGG + chr1_4:52298444-52298463 None:intergenic 40.0%
!! TTTGGGAAGCTTTTGGAAAG+TGG - chr1_4:52298445-52298464 Msa0169170:intron 40.0%
GTTCACTGAGATGTGAGATT+TGG - chr1_4:52299142-52299161 Msa0169170:CDS 40.0%
GCTAGAACAACTCAACAAAC+AGG + chr1_4:52299279-52299298 None:intergenic 40.0%
! GTTTGTTGAGTTGTTCTAGC+TGG - chr1_4:52299279-52299298 Msa0169170:intron 40.0%
AAGGCGGTTTGAAAAACCAA+TGG + chr1_4:52299325-52299344 None:intergenic 40.0%
AAACTGCAGAAAGTCAAAGG+CGG + chr1_4:52299341-52299360 None:intergenic 40.0%
CGTAAACTGCAGAAAGTCAA+AGG + chr1_4:52299344-52299363 None:intergenic 40.0%
AAAATGGGCAACTACCTTGA+TGG - chr1_4:52299565-52299584 Msa0169170:intron 40.0%
GGTATGCCTTAGATAGACTT+AGG - chr1_4:52299615-52299634 Msa0169170:intron 40.0%
CATCAGCCTAAGTCTATCTA+AGG + chr1_4:52299624-52299643 None:intergenic 40.0%
CAAAGCTAAAGTTGTAGCCA+CGG + chr1_4:52299684-52299703 None:intergenic 40.0%
!!! AACACACCTCTGAGATTTTC+AGG + chr1_4:52299764-52299783 None:intergenic 40.0%
AGGGGAATTGGGACATTAAA+AGG - chr1_4:52299847-52299866 Msa0169170:intron 40.0%
AGCATACGATAGTCAACAAC+AGG + chr1_4:52299929-52299948 None:intergenic 40.0%
! TACAGTTTTACCCAAAGCGT+TGG - chr1_4:52300087-52300106 Msa0169170:CDS 40.0%
! TGATGGTTTCGAGTACTTGA+AGG - chr1_4:52300231-52300250 Msa0169170:CDS 40.0%
GGCTAGATTTACTGAGCATT+CGG - chr1_4:52300294-52300313 Msa0169170:CDS 40.0%
AGGAACGAAGCAATACTTGA+TGG - chr1_4:52300334-52300353 Msa0169170:CDS 40.0%
! CTTGATGGCAGTGATGTAAA+TGG - chr1_4:52300349-52300368 Msa0169170:CDS 40.0%
ATGGCAGTGATGTAAATGGA+AGG - chr1_4:52300353-52300372 Msa0169170:CDS 40.0%
AAACCCGATCTGTGGGAATT+GGG + chr1_4:52297078-52297097 None:intergenic 45.0%
CAGAATTCAAACCCGATCTG+TGG + chr1_4:52297086-52297105 None:intergenic 45.0%
! GTTGTTGATGGAATTGAGGG+TGG + chr1_4:52297227-52297246 None:intergenic 45.0%
! GGAGGTTGTTGATGGAATTG+AGG + chr1_4:52297231-52297250 None:intergenic 45.0%
GATGTTGAGGAGGTTGTTGA+TGG + chr1_4:52297239-52297258 None:intergenic 45.0%
TCGATAACCGACACCATCAA+AGG - chr1_4:52297257-52297276 Msa0169170:CDS 45.0%
!! ATGTGAGCCTTTGATGGTGT+CGG + chr1_4:52297267-52297286 None:intergenic 45.0%
ACACCATCAAAGGCTCACAT+AGG - chr1_4:52297267-52297286 Msa0169170:CDS 45.0%
GAACCTATGTGAGCCTTTGA+TGG + chr1_4:52297273-52297292 None:intergenic 45.0%
! ACGGGGTATTCACTCTCAAA+AGG - chr1_4:52297299-52297318 Msa0169170:CDS 45.0%
! CGGGGTATTCACTCTCAAAA+GGG - chr1_4:52297300-52297319 Msa0169170:CDS 45.0%
!! GCATCTGAGATTTTCACCGT+TGG - chr1_4:52297344-52297363 Msa0169170:intron 45.0%
!! TCTGAGATTTTCACCGTTGG+TGG - chr1_4:52297347-52297366 Msa0169170:intron 45.0%
! CTGAGATTTTCACCGTTGGT+GGG - chr1_4:52297348-52297367 Msa0169170:intron 45.0%
GAGTGAAGGGACTGATGTTA+GGG - chr1_4:52297454-52297473 Msa0169170:intron 45.0%
TTTGATAGGACGTTGGAGAG+TGG - chr1_4:52297539-52297558 Msa0169170:intron 45.0%
CACAAACACTACCCTCGATA+AGG + chr1_4:52297678-52297697 None:intergenic 45.0%
ATCGAGGGTAGTGTTTGTGA+AGG - chr1_4:52297679-52297698 Msa0169170:intron 45.0%
!!! TGATTCGTTTTTTGGGGGTG+GGG - chr1_4:52298038-52298057 Msa0169170:intron 45.0%
!! ATTGTAGCGTTGGTGTTGTG+AGG - chr1_4:52298359-52298378 Msa0169170:intron 45.0%
! TCACCAGTTTGGGAAGCTTT+TGG - chr1_4:52298438-52298457 Msa0169170:intron 45.0%
! TATCGAGGCTCCTGTTTTCA+AGG - chr1_4:52298612-52298631 Msa0169170:intron 45.0%
TCGCAAATTGCAACTGGCAA+GGG + chr1_4:52298935-52298954 None:intergenic 45.0%
CTGACATGCAAGAGCTTACT+GGG - chr1_4:52299534-52299553 Msa0169170:intron 45.0%
! CGTGGCTACAACTTTAGCTT+TGG - chr1_4:52299682-52299701 Msa0169170:intron 45.0%
CTGCTTTCAGCTGGAAACAA+TGG + chr1_4:52299718-52299737 None:intergenic 45.0%
TCAAACAGACTGCTTTCAGC+TGG + chr1_4:52299727-52299746 None:intergenic 45.0%
TCAGCTGTGATGCAAACTGA+TGG - chr1_4:52300214-52300233 Msa0169170:CDS 45.0%
!!! GACTGAGCTTTTGGAGTATG+TGG - chr1_4:52300273-52300292 Msa0169170:CDS 45.0%
GCAGTGATGTAAATGGAAGG+CGG - chr1_4:52300356-52300375 Msa0169170:CDS 45.0%
CAGTGATGTAAATGGAAGGC+GGG - chr1_4:52300357-52300376 Msa0169170:CDS 45.0%
TTACAGTGAACCGTGGATAG+AGG - chr1_4:52300449-52300468 Msa0169170:five_prime_UTR 45.0%
TACAGTGAACCGTGGATAGA+GGG - chr1_4:52300450-52300469 Msa0169170:five_prime_UTR 45.0%
GGGAGACGATCAACATTCAT+AGG - chr1_4:52300470-52300489 Msa0169170:five_prime_UTR 45.0%
!! AACATGTTTGGTGGTGTTGC+AGG - chr1_4:52300546-52300565 Msa0169170:five_prime_UTR 45.0%
GTTGCAGGTTTGTCTTCGAT+AGG - chr1_4:52300561-52300580 Msa0169170:five_prime_UTR 45.0%
AGCAAGCAAAAAAGGGACAG+AGG + chr1_4:52300657-52300676 None:intergenic 45.0%
! AGTTGATGTGTCACGCGCTA+TGG + chr1_4:52296905-52296924 None:intergenic 50.0%
GATCTGTGGGAATTGGGATC+GGG + chr1_4:52297072-52297091 None:intergenic 50.0%
CGATCTGTGGGAATTGGGAT+CGG + chr1_4:52297073-52297092 None:intergenic 50.0%
CGATCCCAATTCCCACAGAT+CGG - chr1_4:52297071-52297090 Msa0169170:three_prime_UTR 50.0%
GATCCCAATTCCCACAGATC+GGG - chr1_4:52297072-52297091 Msa0169170:three_prime_UTR 50.0%
CAAACCCGATCTGTGGGAAT+TGG + chr1_4:52297079-52297098 None:intergenic 50.0%
AGCCACGAGAAGGTGAATTG+GGG + chr1_4:52297130-52297149 None:intergenic 50.0%
GAGCCACGAGAAGGTGAATT+GGG + chr1_4:52297131-52297150 None:intergenic 50.0%
AGAGCCACGAGAAGGTGAAT+TGG + chr1_4:52297132-52297151 None:intergenic 50.0%
ACCTTCTCGTGGCTCTCTTA+TGG - chr1_4:52297136-52297155 Msa0169170:exon 50.0%
CCTTCTCGTGGCTCTCTTAT+GGG - chr1_4:52297137-52297156 Msa0169170:exon 50.0%
GATGGAATTGAGGGTGGTGA+TGG + chr1_4:52297221-52297240 None:intergenic 50.0%
GTCGGTTATCGATGTTGAGG+AGG + chr1_4:52297249-52297268 None:intergenic 50.0%
!! GGTGTCGGTTATCGATGTTG+AGG + chr1_4:52297252-52297271 None:intergenic 50.0%
TTACCCTGATGGGAAAAGCG+TGG - chr1_4:52297391-52297410 Msa0169170:intron 50.0%
CGAGTGAAGGGACTGATGTT+AGG - chr1_4:52297453-52297472 Msa0169170:intron 50.0%
TGGATCAGAGTGGGAAAGAG+AGG - chr1_4:52297498-52297517 Msa0169170:intron 50.0%
! GAGTGGGAAAGAGAGGCATA+AGG - chr1_4:52297505-52297524 Msa0169170:intron 50.0%
TGTTGGAAAAGGGGGGTGAA+AGG - chr1_4:52297931-52297950 Msa0169170:CDS 50.0%
TGTTGTGAGGTCACACACAG+AGG - chr1_4:52298372-52298391 Msa0169170:intron 50.0%
GTTGTGAGGTCACACACAGA+GGG - chr1_4:52298373-52298392 Msa0169170:intron 50.0%
AACTAATGCCAGAAGCAGGC+AGG + chr1_4:52298832-52298851 None:intergenic 50.0%
TGCCTGCTTCTGGCATTAGT+TGG - chr1_4:52298831-52298850 Msa0169170:intron 50.0%
GCCTGCTTCTGGCATTAGTT+GGG - chr1_4:52298832-52298851 Msa0169170:intron 50.0%
ACCCAACTAATGCCAGAAGC+AGG + chr1_4:52298836-52298855 None:intergenic 50.0%
CAAATTGCAACTGGCAAGGG+TGG + chr1_4:52298932-52298951 None:intergenic 50.0%
CTCGCAAATTGCAACTGGCA+AGG + chr1_4:52298936-52298955 None:intergenic 50.0%
GAGGCATAAATGAGGGAAGC+GGG + chr1_4:52299076-52299095 None:intergenic 50.0%
! GGAGGCATAAATGAGGGAAG+CGG + chr1_4:52299077-52299096 None:intergenic 50.0%
CCAGTAAGCTCTTGCATGTC+AGG + chr1_4:52299536-52299555 None:intergenic 50.0%
CCTGACATGCAAGAGCTTAC+TGG - chr1_4:52299533-52299552 Msa0169170:intron 50.0%
TAGCAGATGCTGAGCCATCA+AGG + chr1_4:52299582-52299601 None:intergenic 50.0%
ATCTGCTAGCAGCAGCTGAT+CGG - chr1_4:52299594-52299613 Msa0169170:intron 50.0%
GCAAGGCCTGAAAATCTCAG+AGG - chr1_4:52299755-52299774 Msa0169170:intron 50.0%
CTTCGTTCCTATGCTTGCAC+AGG + chr1_4:52300324-52300343 None:intergenic 50.0%
TGATCGTCTCCCTCTATCCA+CGG + chr1_4:52300462-52300481 None:intergenic 50.0%
CACCCCAATTCACCTTCTCG+TGG - chr1_4:52297125-52297144 Msa0169170:exon 55.0%
CCCATAAGAGAGCCACGAGA+AGG + chr1_4:52297140-52297159 None:intergenic 55.0%
! TCACCGTTGGTGGGTACGAA+TGG - chr1_4:52297357-52297376 Msa0169170:intron 55.0%
! CACCGTTGGTGGGTACGAAT+GGG - chr1_4:52297358-52297377 Msa0169170:intron 55.0%
! CCTCCACGCTTTTCCCATCA+GGG + chr1_4:52297397-52297416 None:intergenic 55.0%
! TCCTCCACGCTTTTCCCATC+AGG + chr1_4:52297398-52297417 None:intergenic 55.0%
TTCATCGCGCTTGCGAGTGA+AGG - chr1_4:52297440-52297459 Msa0169170:intron 55.0%
TCATCGCGCTTGCGAGTGAA+GGG - chr1_4:52297441-52297460 Msa0169170:intron 55.0%
!!! TTCGTTTTTTGGGGGTGGGG+TGG - chr1_4:52298041-52298060 Msa0169170:intron 55.0%
!!! TCGTTTTTTGGGGGTGGGGT+GGG - chr1_4:52298042-52298061 Msa0169170:intron 55.0%
GGCAGGATTGGGCACTAAGT+TGG + chr1_4:52298815-52298834 None:intergenic 55.0%
TGCCAGAAGCAGGCAGGATT+GGG + chr1_4:52298826-52298845 None:intergenic 55.0%
ATGCCAGAAGCAGGCAGGAT+TGG + chr1_4:52298827-52298846 None:intergenic 55.0%
CGGACTTCCTGTGCAAGCAT+AGG - chr1_4:52300314-52300333 Msa0169170:CDS 55.0%
! AACAGGGTTCTCTGGAGACC+TGG + chr1_4:52300412-52300431 None:intergenic 55.0%
GTGAGTGGAACAGGGTTCTC+TGG + chr1_4:52300420-52300439 None:intergenic 55.0%
CGCCCATTCGTACCCACCAA+CGG + chr1_4:52297363-52297382 None:intergenic 60.0%
! CCCTGATGGGAAAAGCGTGG+AGG - chr1_4:52297394-52297413 Msa0169170:intron 60.0%
TGCCCAATCCTGCCTGCTTC+TGG - chr1_4:52298821-52298840 Msa0169170:intron 60.0%
ACGCGCTATGGACTTGCGCG+TGG + chr1_4:52296893-52296912 None:intergenic 65.0%
!! TTTTGGGGGTGGGGTGGGAG+AGG - chr1_4:52298047-52298066 Msa0169170:intron 65.0%
TTTGGGGGTGGGGTGGGAGA+GGG - chr1_4:52298048-52298067 Msa0169170:intron 65.0%
GGTGGGGTGGGAGAGGGCCT+TGG - chr1_4:52298054-52298073 Msa0169170:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 52296871 52300678 52296871 ID=Msa0169170;Name=Msa0169170
chr1_4 mRNA 52296871 52300678 52296871 ID=Msa0169170-mRNA-1;Parent=Msa0169170;Name=Msa0169170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=284|1|1|1|1|1|4|270|418
chr1_4 exon 52296871 52297331 52296871 ID=Msa0169170-mRNA-1:exon:15506;Parent=Msa0169170-mRNA-1
chr1_4 exon 52297773 52298049 52297773 ID=Msa0169170-mRNA-1:exon:15505;Parent=Msa0169170-mRNA-1
chr1_4 exon 52298916 52299264 52298916 ID=Msa0169170-mRNA-1:exon:15504;Parent=Msa0169170-mRNA-1
chr1_4 exon 52299955 52300678 52299955 ID=Msa0169170-mRNA-1:exon:15503;Parent=Msa0169170-mRNA-1
chr1_4 five_prime_UTR 52300395 52300678 52300395 ID=Msa0169170-mRNA-1:five_prime_utr;Parent=Msa0169170-mRNA-1
chr1_4 CDS 52299955 52300394 52299955 ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4 CDS 52298916 52299264 52298916 ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4 CDS 52297773 52298049 52297773 ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4 CDS 52297141 52297331 52297141 ID=Msa0169170-mRNA-1:cds;Parent=Msa0169170-mRNA-1
chr1_4 three_prime_UTR 52296871 52297140 52296871 ID=Msa0169170-mRNA-1:three_prime_utr;Parent=Msa0169170-mRNA-1
Gene Sequence

>Msa0169170

ATGGGTAAGATTCTTCGAGAAACAACGAGGCCATCCTCAAATTCATCATCATCATCTTCATCACCATCACCACCCTCAATTCCATCAACAACCTCCTCAACATCGATAACCGACACCATCAAAGGCTCACATAGGTTCAAGATAACGGGGTATTCACTCTCAAAAGGGATTGGAATTGGGAAATACATAGCATCTGAGATTTTCACCGTTGGTGGGTACGAATGGGCGATTTATTTTTACCCTGATGGGAAAAGCGTGGAGGATAATGCTACGTATGTGTCGCTTTTCATCGCGCTTGCGAGTGAAGGGACTGATGTTAGGGCGCTTTTTGAATTAACGCTTTTGGATCAGAGTGGGAAAGAGAGGCATAAGGTTCATAGTCATTTTGATAGGACGTTGGAGAGTGGACCTTATACGTTGAAATATCGTGGTAGCATGTGGGGATACAAGAGATTTTTTAAGAGAACGTCATTAGAGACTTCAGATTACCTTAAAGATAACTGTCTTAGTGTTAATTGTAGCGTTGGTGTTGTGAGGTCACACACAGAGGGCCCTAGAACATTTTCGATTCCAATATCACCTTCTACTATTGGTCACCAGTTTGGGAAGCTTTTGGAAAGTGGAAAAAGCAGCGATGTGAATTTTGAAGTGAATGGTGAAATTTTTGCGGCTCATAAATTGGTACTAGCAGCTCGATCACCTGTTTTTAGAGCTCAGCTTTTTGGTCCTATGAAAGATCAGAACACACAGTGTATAAAAGTTGAAGATATCGAGGCTCCTGTTTTCAAGGCATTGCTGCATGTTATATATTGGGACTCGCTGCCTGACATGCAAGAGCTTACTGGGATTAACTCAAAATGGGCAACTACCTTGATGGCTCAGCATCTGCTAGCAGCAGCTGATCGGTATGCCTTAGATAGACTTAGGCTGATGTGTGAAGCAAGTCTATGTGAAGATGTTGCAATAAATACCGTGGCTACAACTTTAGCTTTGGCAGAGCAGCACCATTGTTTCCAGCTGAAAGCAGTCTGTTTGAAATTCATTGCAAGGCCTGAAAATCTCAGAGCTGTGATGCAAACTGATGGTTTCGAGTACTTGAAGGAAAGTTGCCCATCTGTTTTGACTGAGCTTTTGGAGTATGTGGCTAGATTTACTGAGCATTCGGACTTCCTGTGCAAGCATAGGAACGAAGCAATACTTGATGGCAGTGATGTAAATGGAAGGCGGGTGAAGCAAAGACTATACTGTGAAAAATGA

Protein sequence

>Msa0169170

MGKILRETTRPSSNSSSSSSSPSPPSIPSTTSSTSITDTIKGSHRFKITGYSLSKGIGIGKYIASEIFTVGGYEWAIYFYPDGKSVEDNATYVSLFIALASEGTDVRALFELTLLDQSGKERHKVHSHFDRTLESGPYTLKYRGSMWGYKRFFKRTSLETSDYLKDNCLSVNCSVGVVRSHTEGPRTFSIPISPSTIGHQFGKLLESGKSSDVNFEVNGEIFAAHKLVLAARSPVFRAQLFGPMKDQNTQCIKVEDIEAPVFKALLHVIYWDSLPDMQELTGINSKWATTLMAQHLLAAADRYALDRLRLMCEASLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIARPENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFLCKHRNEAILDGSDVNGRRVKQRLYCEK*