Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124640 | sp|Q9M8J9|BPM2_ARATH | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124640 | G7I2K6 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002560 | Msa0124640 | 0.801502 | 8.736003e-49 | -8.615850e-47 |
| Msa0042620 | Msa0124640 | 0.808458 | 3.066390e-50 | -8.615850e-47 |
| Msa0064920 | Msa0124640 | 0.821032 | 5.007617e-53 | -8.615850e-47 |
| Msa0078480 | Msa0124640 | 0.820351 | 7.181308e-53 | -8.615850e-47 |
| Msa0082450 | Msa0124640 | 0.801745 | 7.788604e-49 | -8.615850e-47 |
| Msa0118900 | Msa0124640 | 0.800005 | 1.765712e-48 | -8.615850e-47 |
| Msa0124640 | Msa0160400 | 0.817962 | 2.512189e-52 | -8.615850e-47 |
| Msa0124640 | Msa0169170 | 0.812239 | 4.685887e-51 | -8.615850e-47 |
| Msa0124640 | Msa0227190 | 0.807064 | 6.067007e-50 | -8.615850e-47 |
| Msa0124640 | Msa0280110 | 0.801991 | 6.934568e-49 | -8.615850e-47 |
| Msa0124640 | Msa0358400 | 0.803265 | 3.785333e-49 | -8.615850e-47 |
| Msa0124640 | Msa0395980 | 0.804787 | 1.826972e-49 | -8.615850e-47 |
| Msa0124640 | Msa0491000 | 0.809592 | 1.753860e-50 | -8.615850e-47 |
| Msa0124640 | Msa0510290 | 0.827019 | 1.971514e-54 | -8.615850e-47 |
| Msa0124640 | Msa0515710 | 0.803471 | 3.432232e-49 | -8.615850e-47 |
| Msa0124640 | Msa0623990 | 0.805913 | 1.061193e-49 | -8.615850e-47 |
| Msa0124640 | Msa0624680 | 0.809979 | 1.447332e-50 | -8.615850e-47 |
| Msa0124640 | Msa0647430 | 0.824648 | 7.201781e-54 | -8.615850e-47 |
| Msa0124640 | Msa0697720 | 0.804921 | 1.712278e-49 | -8.615850e-47 |
| Msa0124640 | Msa1122780 | 0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0124640 | Msa1190970 | 0.828171 | 1.042671e-54 | -8.615850e-47 |
| Msa0124640 | Msa1244640 | 0.826218 | 3.061202e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124640 | MtrunA17_Chr1g0185861 | 99.760 | 417 | 1 | 0 | 1 | 417 | 1 | 417 | 0.0 | 868 |
| Msa0124640 | MtrunA17_Chr7g0259501 | 88.647 | 414 | 43 | 1 | 1 | 414 | 1 | 410 | 0.0 | 732 |
| Msa0124640 | MtrunA17_Chr5g0440341 | 57.545 | 391 | 149 | 6 | 33 | 413 | 23 | 406 | 7.91e-155 | 443 |
| Msa0124640 | MtrunA17_Chr7g0254001 | 56.883 | 385 | 158 | 4 | 36 | 415 | 13 | 394 | 1.15e-144 | 418 |
| Msa0124640 | MtrunA17_Chr4g0002921 | 60.335 | 179 | 71 | 0 | 39 | 217 | 23 | 201 | 7.43e-71 | 227 |
| Msa0124640 | MtrunA17_Chr3g0112351 | 59.140 | 93 | 38 | 0 | 262 | 354 | 6 | 98 | 5.22e-32 | 117 |
| Msa0124640 | MtrunA17_Chr1g0205751 | 31.098 | 164 | 89 | 4 | 191 | 348 | 519 | 664 | 1.65e-15 | 78.6 |
| Msa0124640 | MtrunA17_Chr5g0394261 | 30.435 | 161 | 94 | 3 | 191 | 348 | 516 | 661 | 2.50e-14 | 75.1 |
| Msa0124640 | MtrunA17_Chr7g0259851 | 28.395 | 162 | 96 | 4 | 191 | 348 | 506 | 651 | 1.38e-13 | 72.8 |
| Msa0124640 | MtrunA17_Chr3g0125321 | 27.568 | 185 | 113 | 5 | 205 | 383 | 74 | 243 | 1.18e-12 | 67.8 |
| Msa0124640 | MtrunA17_Chr3g0103031 | 28.289 | 152 | 94 | 3 | 201 | 350 | 155 | 293 | 1.57e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124640 | AT3G06190.1 | 72.616 | 409 | 108 | 1 | 7 | 415 | 2 | 406 | 0.0 | 626 |
| Msa0124640 | AT5G19000.1 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| Msa0124640 | AT5G19000.3 | 72.872 | 376 | 102 | 0 | 40 | 415 | 32 | 407 | 0.0 | 593 |
| Msa0124640 | AT5G19000.2 | 66.667 | 411 | 102 | 1 | 40 | 415 | 32 | 442 | 0.0 | 577 |
| Msa0124640 | AT3G06190.5 | 72.857 | 350 | 91 | 1 | 7 | 356 | 2 | 347 | 0.0 | 540 |
| Msa0124640 | AT2G39760.1 | 60.674 | 356 | 139 | 1 | 27 | 382 | 11 | 365 | 1.84e-164 | 468 |
| Msa0124640 | AT3G03740.1 | 60.548 | 365 | 133 | 4 | 22 | 382 | 31 | 388 | 4.39e-153 | 441 |
| Msa0124640 | AT2G39760.4 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.67e-151 | 432 |
| Msa0124640 | AT2G39760.3 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 4.67e-151 | 432 |
| Msa0124640 | AT2G39760.2 | 60.976 | 328 | 127 | 1 | 27 | 354 | 11 | 337 | 6.98e-151 | 431 |
| Msa0124640 | AT3G43700.1 | 53.171 | 410 | 176 | 7 | 16 | 413 | 8 | 413 | 8.11e-146 | 421 |
| Msa0124640 | AT5G21010.1 | 52.068 | 411 | 181 | 6 | 15 | 413 | 2 | 408 | 5.21e-142 | 411 |
| Msa0124640 | AT3G43700.2 | 55.807 | 353 | 143 | 6 | 16 | 359 | 8 | 356 | 3.06e-134 | 390 |
| Msa0124640 | AT3G43700.3 | 56.609 | 348 | 138 | 6 | 16 | 354 | 8 | 351 | 5.10e-134 | 389 |
| Msa0124640 | AT3G06190.3 | 65.529 | 293 | 90 | 3 | 7 | 292 | 2 | 290 | 2.55e-133 | 385 |
| Msa0124640 | AT3G06190.4 | 71.538 | 260 | 70 | 1 | 7 | 266 | 2 | 257 | 6.33e-133 | 384 |
| Msa0124640 | AT3G06190.2 | 70.866 | 254 | 70 | 1 | 7 | 260 | 2 | 251 | 2.33e-126 | 367 |
| Msa0124640 | AT3G06190.2 | 59.649 | 57 | 23 | 0 | 359 | 415 | 239 | 295 | 1.55e-13 | 71.2 |
| Msa0124640 | AT5G19330.1 | 29.193 | 161 | 96 | 3 | 191 | 348 | 521 | 666 | 7.60e-16 | 80.1 |
| Msa0124640 | AT5G13060.1 | 26.368 | 201 | 133 | 3 | 189 | 388 | 546 | 732 | 3.54e-14 | 75.1 |
Find 126 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAAGACAGTTATCTTTA+AGG | 0.101359 | 1_3:+52482584 | None:intergenic |
| ACCTTCTCGTGGCTCTCTTA+TGG | 0.177023 | 1_3:-52483763 | Msa0124640:exon |
| AGGTGAATTGGGGTGAAATT+AGG | 0.213084 | 1_3:+52483782 | None:intergenic |
| CATTGCTGCATGTTATATAT+TGG | 0.221491 | 1_3:-52481416 | Msa0124640:CDS |
| CTCTCAAAAGGGATTGGAAT+TGG | 0.250201 | 1_3:-52483588 | Msa0124640:CDS |
| CCTTCTCGTGGCTCTCTTAT+GGG | 0.253416 | 1_3:-52483762 | Msa0124640:exon |
| ATCGAGAAAAGGTGGGATTT+TGG | 0.261853 | 1_3:+52483864 | None:intergenic |
| TTACTGGGATTAACTCAAAA+TGG | 0.277584 | 1_3:-52481368 | Msa0124640:CDS |
| TCTACTATTGGTCACCAGTT+TGG | 0.278284 | 1_3:-52482490 | Msa0124640:CDS |
| TCACCAGTTTGGGAAGCTTT+TGG | 0.292881 | 1_3:-52482479 | Msa0124640:CDS |
| CAAACCCGATCTGTGGGAAT+TGG | 0.317482 | 1_3:+52483823 | None:intergenic |
| GAAATTCTAGGGTTTGGATT+TGG | 0.318479 | 1_3:+52483915 | None:intergenic |
| TCTATGGATGGTGGTGATAA+AGG | 0.322258 | 1_3:+52483972 | None:intergenic |
| CCTGACATGCAAGAGCTTAC+TGG | 0.322826 | 1_3:-52481384 | Msa0124640:CDS |
| CGAGTGAAGGGACTGATGTT+AGG | 0.326194 | 1_3:-52483446 | Msa0124640:CDS |
| CCAATATCACCTTCTACTAT+TGG | 0.326476 | 1_3:-52482502 | Msa0124640:CDS |
| CTACTATTGGTCACCAGTTT+GGG | 0.329635 | 1_3:-52482489 | Msa0124640:CDS |
| AACATGTTTGGTGGTGTTGC+AGG | 0.335857 | 1_3:-52480371 | Msa0124640:three_prime_UTR |
| AAGATGGAAATTCTAGGGTT+TGG | 0.343948 | 1_3:+52483909 | None:intergenic |
| GAACCTATGTGAGCCTTTGA+TGG | 0.352408 | 1_3:+52483629 | None:intergenic |
| CCACGATATTTCAACGTATA+AGG | 0.352677 | 1_3:+52483336 | None:intergenic |
| ATTGCTGCATGTTATATATT+GGG | 0.354568 | 1_3:-52481415 | Msa0124640:CDS |
| ATTGGAATCGAAAATGTTCT+AGG | 0.357925 | 1_3:+52482520 | None:intergenic |
| CATCAGCCTAAGTCTATCTA+AGG | 0.367304 | 1_3:+52481296 | None:intergenic |
| GGTGAATTGGGGTGAAATTA+GGG | 0.368343 | 1_3:+52483783 | None:intergenic |
| CTTGATGGCAGTGATGTAAA+TGG | 0.372844 | 1_3:-52480568 | Msa0124640:CDS |
| ATTATTTAAACCTTGAAAAC+AGG | 0.377554 | 1_3:+52482295 | None:intergenic |
| CCAATAGTAGAAGGTGATAT+TGG | 0.380995 | 1_3:+52482502 | None:intergenic |
| CCAGTAAGCTCTTGCATGTC+AGG | 0.381423 | 1_3:+52481384 | None:intergenic |
| TTTCCAAAAGCTTCCCAAAC+TGG | 0.384496 | 1_3:+52482476 | None:intergenic |
| GAGCCACGAGAAGGTGAATT+GGG | 0.389741 | 1_3:+52483771 | None:intergenic |
| TCACATAGGTTCAAGATAAC+GGG | 0.392891 | 1_3:-52483618 | Msa0124640:CDS |
| GTGAGTGGAACAGGGTTCTC+TGG | 0.404158 | 1_3:+52480500 | None:intergenic |
| CGTGGCTACAACTTTAGCTT+TGG | 0.416152 | 1_3:-52481235 | Msa0124640:CDS |
| AAACCCGATCTGTGGGAATT+GGG | 0.422740 | 1_3:+52483824 | None:intergenic |
| AGAGCCACGAGAAGGTGAAT+TGG | 0.423876 | 1_3:+52483770 | None:intergenic |
| AATTTGAAGATGGAAATTCT+AGG | 0.423952 | 1_3:+52483903 | None:intergenic |
| TCTCAAAAGGGATTGGAATT+GGG | 0.424168 | 1_3:-52483587 | Msa0124640:CDS |
| GATGTTGAGGAGGTTGTTGA+TGG | 0.428183 | 1_3:+52483663 | None:intergenic |
| GGCTAGATTTACTGAGCATT+CGG | 0.434481 | 1_3:-52480623 | Msa0124640:CDS |
| CACCGTTGGTGGGTACGAAT+GGG | 0.437086 | 1_3:-52483541 | Msa0124640:CDS |
| TCACCGTTGGTGGGTACGAA+TGG | 0.438080 | 1_3:-52483542 | Msa0124640:CDS |
| ACGGGGTATTCACTCTCAAA+AGG | 0.441675 | 1_3:-52483600 | Msa0124640:CDS |
| TCAAACAGACTGCTTTCAGC+TGG | 0.445729 | 1_3:+52481193 | None:intergenic |
| GGGAGAAGATCAACATTCAT+AGG | 0.447618 | 1_3:-52480447 | Msa0124640:three_prime_UTR |
| TTCATCGCGCTTGCGAGTGA+AGG | 0.449539 | 1_3:-52483459 | Msa0124640:CDS |
| CTCACATAGGTTCAAGATAA+CGG | 0.449878 | 1_3:-52483619 | Msa0124640:CDS |
| AAAATGGGCAACTACCTTGA+TGG | 0.450276 | 1_3:-52481352 | Msa0124640:CDS |
| AGTTGATGTGTCACGCGCTA+TGG | 0.456519 | 1_3:+52483997 | None:intergenic |
| CTGACATGCAAGAGCTTACT+GGG | 0.457209 | 1_3:-52481383 | Msa0124640:CDS |
| TGATGGTTTCGAGTACTTGA+AGG | 0.459553 | 1_3:-52480686 | Msa0124640:CDS |
| TGTGTGTTCTGATCTTTCAT+AGG | 0.465282 | 1_3:+52482346 | None:intergenic |
| TTACAGTGAACCGTGGATAG+AGG | 0.466244 | 1_3:-52480468 | Msa0124640:three_prime_UTR |
| GATCCCAATTCCCACAGATC+GGG | 0.475040 | 1_3:-52483827 | Msa0124640:five_prime_UTR |
| AGATGTAAATGTAACATGTT+TGG | 0.478541 | 1_3:-52480383 | Msa0124640:three_prime_UTR |
| TATTCACTCTCAAAAGGGAT+TGG | 0.480986 | 1_3:-52483594 | Msa0124640:CDS |
| AACTGGTGACCAATAGTAGA+AGG | 0.481007 | 1_3:+52482493 | None:intergenic |
| GAGGTTGTTGATGGAATTGA+GGG | 0.492292 | 1_3:+52483672 | None:intergenic |
| ATTTGAAGATGGAAATTCTA+GGG | 0.505255 | 1_3:+52483904 | None:intergenic |
| GAGTGAAGGGACTGATGTTA+GGG | 0.509324 | 1_3:-52483445 | Msa0124640:CDS |
| CTTCGTTCCTATGCTTGCAC+AGG | 0.511010 | 1_3:+52480596 | None:intergenic |
| CGATCTGTGGGAATTGGGAT+CGG | 0.513021 | 1_3:+52483829 | None:intergenic |
| AGATGATGATGATGAATTTG+AGG | 0.513479 | 1_3:+52483710 | None:intergenic |
| GATCTGTGGGAATTGGGATC+GGG | 0.513803 | 1_3:+52483830 | None:intergenic |
| TGAGAATCTTTATCGAGAAA+AGG | 0.513809 | 1_3:+52483853 | None:intergenic |
| GGAGGTTGTTGATGGAATTG+AGG | 0.515360 | 1_3:+52483671 | None:intergenic |
| CACCCCAATTCACCTTCTCG+TGG | 0.518341 | 1_3:-52483774 | Msa0124640:five_prime_UTR |
| ATCTGCTAGCAGCAGCTGAT+CGG | 0.518356 | 1_3:-52481323 | Msa0124640:CDS |
| TACTGGGATTAACTCAAAAT+GGG | 0.520060 | 1_3:-52481367 | Msa0124640:CDS |
| CGGGGTATTCACTCTCAAAA+GGG | 0.521264 | 1_3:-52483599 | Msa0124640:CDS |
| CGATCCCAATTCCCACAGAT+CGG | 0.522484 | 1_3:-52483828 | Msa0124640:five_prime_UTR |
| TCATCGCGCTTGCGAGTGAA+GGG | 0.522765 | 1_3:-52483458 | Msa0124640:CDS |
| AATATAGGGGAATTTGAAGA+TGG | 0.524378 | 1_3:+52483893 | None:intergenic |
| TCTGTTTGAAATTCATTGCA+AGG | 0.524584 | 1_3:-52481179 | Msa0124640:CDS |
| AAAAGCTCAGTCAAAACAGA+TGG | 0.526627 | 1_3:+52480655 | None:intergenic |
| AACAGGGTTCTCTGGAGACC+TGG | 0.530076 | 1_3:+52480508 | None:intergenic |
| CTTAGTGTTAATTGTAGCGT+TGG | 0.538942 | 1_3:-52482568 | Msa0124640:CDS |
| TACAGTGAACCGTGGATAGA+GGG | 0.541214 | 1_3:-52480467 | Msa0124640:three_prime_UTR |
| GATGGAATTGAGGGTGGTGA+TGG | 0.542993 | 1_3:+52483681 | None:intergenic |
| GTTGCAGGTTTGTCTTCGAT+AGG | 0.543065 | 1_3:-52480356 | Msa0124640:three_prime_UTR |
| AGGAACGAAGCAATACTTGA+TGG | 0.545226 | 1_3:-52480583 | Msa0124640:CDS |
| GAGTGGGAAAGAGAGGCATA+AGG | 0.552695 | 1_3:-52483394 | Msa0124640:CDS |
| CTGCTTTCAGCTGGAAACAA+TGG | 0.557661 | 1_3:+52481202 | None:intergenic |
| TGGATCAGAGTGGGAAAGAG+AGG | 0.559531 | 1_3:-52483401 | Msa0124640:CDS |
| TAGCAGATGCTGAGCCATCA+AGG | 0.560135 | 1_3:+52481338 | None:intergenic |
| CAGAATTCAAACCCGATCTG+TGG | 0.571511 | 1_3:+52483816 | None:intergenic |
| GAATCTTTATCGAGAAAAGG+TGG | 0.572216 | 1_3:+52483856 | None:intergenic |
| TTGGAATCGAAAATGTTCTA+GGG | 0.573539 | 1_3:+52482521 | None:intergenic |
| AATGGAAGAAAATCTATGGA+TGG | 0.576433 | 1_3:+52483960 | None:intergenic |
| TTTGATAGGACGTTGGAGAG+TGG | 0.581385 | 1_3:-52483360 | Msa0124640:CDS |
| CGGACTTCCTGTGCAAGCAT+AGG | 0.582301 | 1_3:-52480603 | Msa0124640:CDS |
| ACGCGCTATGGACTTGCGCG+TGG | 0.582317 | 1_3:+52484009 | None:intergenic |
| ATGTGAGCCTTTGATGGTGT+CGG | 0.584850 | 1_3:+52483635 | None:intergenic |
| TGATCTTCTCCCTCTATCCA+CGG | 0.587590 | 1_3:+52480458 | None:intergenic |
| GTTGTTGATGGAATTGAGGG+TGG | 0.596454 | 1_3:+52483675 | None:intergenic |
| TGAAATATCGTGGTAGCATG+TGG | 0.600425 | 1_3:-52483326 | Msa0124640:intron |
| TCGATAACCGACACCATCAA+AGG | 0.601387 | 1_3:-52483642 | Msa0124640:CDS |
| CAAAGCTAAAGTTGTAGCCA+CGG | 0.605118 | 1_3:+52481236 | None:intergenic |
| TCAGCTGTGATGCAAACTGA+TGG | 0.605667 | 1_3:-52480703 | Msa0124640:intron |
| AATCTTTATCGAGAAAAGGT+GGG | 0.605946 | 1_3:+52483857 | None:intergenic |
| AGAATTCAAACCCGATCTGT+GGG | 0.606842 | 1_3:+52483817 | None:intergenic |
| ATTGTAGCGTTGGTGTTGTG+AGG | 0.611297 | 1_3:-52482558 | Msa0124640:CDS |
| TGTAAATGTAACATGTTTGG+TGG | 0.611863 | 1_3:-52480380 | Msa0124640:three_prime_UTR |
| CAGTGATGTAAATGGAAGGC+GGG | 0.613054 | 1_3:-52480560 | Msa0124640:CDS |
| CGCCCATTCGTACCCACCAA+CGG | 0.616095 | 1_3:+52483539 | None:intergenic |
| CCCATAAGAGAGCCACGAGA+AGG | 0.621474 | 1_3:+52483762 | None:intergenic |
| GATGATGATGAATTTGAGGA+TGG | 0.626655 | 1_3:+52483714 | None:intergenic |
| CCTTATACGTTGAAATATCG+TGG | 0.627057 | 1_3:-52483336 | Msa0124640:CDS |
| AAAGCTCAGTCAAAACAGAT+GGG | 0.629546 | 1_3:+52480656 | None:intergenic |
| TATAAAAGTTGAAGATATCG+AGG | 0.632506 | 1_3:-52482320 | Msa0124640:CDS |
| ACACCATCAAAGGCTCACAT+AGG | 0.632820 | 1_3:-52483632 | Msa0124640:CDS |
| GTCGGTTATCGATGTTGAGG+AGG | 0.637096 | 1_3:+52483653 | None:intergenic |
| GTTGTGAGGTCACACACAGA+GGG | 0.645126 | 1_3:-52482544 | Msa0124640:CDS |
| GGTATGCCTTAGATAGACTT+AGG | 0.647862 | 1_3:-52481302 | Msa0124640:CDS |
| GGAAGAAAATCTATGGATGG+TGG | 0.652202 | 1_3:+52483963 | None:intergenic |
| CACATAGGTTCAAGATAACG+GGG | 0.658135 | 1_3:-52483617 | Msa0124640:CDS |
| AGCCACGAGAAGGTGAATTG+GGG | 0.664711 | 1_3:+52483772 | None:intergenic |
| CCCTGATGGGAAAAGCGTGG+AGG | 0.667337 | 1_3:-52483505 | Msa0124640:CDS |
| TTACCCTGATGGGAAAAGCG+TGG | 0.670712 | 1_3:-52483508 | Msa0124640:CDS |
| AGATTCTTCGCGAAACAACG+AGG | 0.699126 | 1_3:-52483737 | Msa0124640:CDS |
| ATGGCAGTGATGTAAATGGA+AGG | 0.702793 | 1_3:-52480564 | Msa0124640:CDS |
| AGATGTTGCAATAAATACCG+TGG | 0.705274 | 1_3:-52481253 | Msa0124640:CDS |
| GCAGTGATGTAAATGGAAGG+CGG | 0.707656 | 1_3:-52480561 | Msa0124640:CDS |
| GGTGTCGGTTATCGATGTTG+AGG | 0.707765 | 1_3:+52483650 | None:intergenic |
| TGTTGTGAGGTCACACACAG+AGG | 0.714300 | 1_3:-52482545 | Msa0124640:CDS |
| GCAAGGCCTGAAAATCTCAG+AGG | 0.724609 | 1_3:-52481162 | Msa0124640:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAGAAAGATGAAAATT+TGG | - | chr1_3:52481238-52481257 | Msa0124640:CDS | 15.0% |
| !! | ATGCTTAACAATTATAATAA+GGG | + | chr1_3:52482154-52482173 | None:intergenic | 15.0% |
| !! | TATGCTTAACAATTATAATA+AGG | + | chr1_3:52482155-52482174 | None:intergenic | 15.0% |
| !!! | AATGTTGATAAAAAAAATAG+AGG | + | chr1_3:52482418-52482437 | None:intergenic | 15.0% |
| !! | TCAAAATAGAGAAAAAAATA+TGG | + | chr1_3:52482850-52482869 | None:intergenic | 15.0% |
| !!! | TATTTTTTTCTCTATTTTGA+AGG | - | chr1_3:52482850-52482869 | Msa0124640:intron | 15.0% |
| !!! | GTTCTTAAACTTTTTTAATT+AGG | - | chr1_3:52483416-52483435 | Msa0124640:CDS | 15.0% |
| !! | AAAAAATGGAAGAAAATCTA+TGG | + | chr1_3:52480336-52480355 | None:intergenic | 20.0% |
| !! | AGAAGAGATAAATGAAAAAA+TGG | + | chr1_3:52480350-52480369 | None:intergenic | 20.0% |
| !!! | ATTACTTTGAGTTATTTAAG+GGG | + | chr1_3:52481469-52481488 | None:intergenic | 20.0% |
| !!! | CATTACTTTGAGTTATTTAA+GGG | + | chr1_3:52481470-52481489 | None:intergenic | 20.0% |
| !!! | ATTGTTTTAAATTGTGTTTC+AGG | - | chr1_3:52481635-52481654 | Msa0124640:intron | 20.0% |
| !!! | TTGTTTTAAATTGTGTTTCA+GGG | - | chr1_3:52481636-52481655 | Msa0124640:intron | 20.0% |
| !! | ATTATTTAAACCTTGAAAAC+AGG | + | chr1_3:52481997-52482016 | None:intergenic | 20.0% |
| !! | TGCTTAACAATTATAATAAG+GGG | + | chr1_3:52482153-52482172 | None:intergenic | 20.0% |
| !! | AGAACACAACAATAAAAATA+TGG | - | chr1_3:52482375-52482394 | Msa0124640:CDS | 20.0% |
| !! | TCTTTATACCAATTAACATT+TGG | + | chr1_3:52482470-52482489 | None:intergenic | 20.0% |
| !! | TAAAGGAAATAAAATCAGAA+AGG | + | chr1_3:52482618-52482637 | None:intergenic | 20.0% |
| !!! | ATTTTATTTCCTTTATTGCT+TGG | - | chr1_3:52482623-52482642 | Msa0124640:CDS | 20.0% |
| !! | TCTAATTCTTATTAAACCAT+TGG | - | chr1_3:52482678-52482697 | Msa0124640:intron | 20.0% |
| !! | AGAAAAATATGTGCAATATT+AGG | - | chr1_3:52483199-52483218 | Msa0124640:intron | 20.0% |
| !! | GAAAAATATGTGCAATATTA+GGG | - | chr1_3:52483200-52483219 | Msa0124640:intron | 20.0% |
| !! | AAAAATATGTGCAATATTAG+GGG | - | chr1_3:52483201-52483220 | Msa0124640:intron | 20.0% |
| ! | ATTTGAAGATGGAAATTCTA+GGG | + | chr1_3:52480388-52480407 | None:intergenic | 25.0% |
| ! | AATTTGAAGATGGAAATTCT+AGG | + | chr1_3:52480389-52480408 | None:intergenic | 25.0% |
| !!! | ATTTTGGTGAGAAAATATAG+GGG | + | chr1_3:52480412-52480431 | None:intergenic | 25.0% |
| !!! | GATTTTGGTGAGAAAATATA+GGG | + | chr1_3:52480413-52480432 | None:intergenic | 25.0% |
| !!! | AAACGTTTGATTCGTTTTTT+GGG | - | chr1_3:52481403-52481422 | Msa0124640:CDS | 25.0% |
| !! | CCATTACTTTGAGTTATTTA+AGG | + | chr1_3:52481471-52481490 | None:intergenic | 25.0% |
| ! | CCTTAAATAACTCAAAGTAA+TGG | - | chr1_3:52481468-52481487 | Msa0124640:intron | 25.0% |
| ! | AATCAACAAATGCATTCAAT+GGG | + | chr1_3:52481531-52481550 | None:intergenic | 25.0% |
| ! | AAATCAACAAATGCATTCAA+TGG | + | chr1_3:52481532-52481551 | None:intergenic | 25.0% |
| !!! | TTGAATGCATTTGTTGATTT+TGG | - | chr1_3:52481532-52481551 | Msa0124640:intron | 25.0% |
| !!! | TGTTTTAAATTGTGTTTCAG+GGG | - | chr1_3:52481637-52481656 | Msa0124640:intron | 25.0% |
| ! | TATAAAAGTTGAAGATATCG+AGG | - | chr1_3:52481969-52481988 | Msa0124640:intron | 25.0% |
| ! | ACATGTTTGCAAAAAAACAT+TGG | - | chr1_3:52482241-52482260 | Msa0124640:intron | 25.0% |
| ! | TTATACCAATTAACATTTGG+AGG | + | chr1_3:52482467-52482486 | None:intergenic | 25.0% |
| ! | ATGTTAATTGGTATAAAGAC+TGG | - | chr1_3:52482471-52482490 | Msa0124640:CDS | 25.0% |
| ! | AATTTATACAAGAACTTGTG+GGG | + | chr1_3:52482572-52482591 | None:intergenic | 25.0% |
| ! | CAATTTATACAAGAACTTGT+GGG | + | chr1_3:52482573-52482592 | None:intergenic | 25.0% |
| ! | TCAATTTATACAAGAACTTG+TGG | + | chr1_3:52482574-52482593 | None:intergenic | 25.0% |
| ! | GAAGTTTAATAACATGCATA+TGG | - | chr1_3:52482797-52482816 | Msa0124640:intron | 25.0% |
| ! | ATTGCTGCATGTTATATATT+GGG | - | chr1_3:52482874-52482893 | Msa0124640:intron | 25.0% |
| !! | AATACTTCAGTTGATATCAT+AGG | + | chr1_3:52483548-52483567 | None:intergenic | 25.0% |
| ! | AGATGTAAATGTAACATGTT+TGG | - | chr1_3:52483906-52483925 | Msa0124640:five_prime_UTR | 25.0% |
| ! | CGTGGATTTTATAGTTGAAT+TGG | + | chr1_3:52480265-52480284 | None:intergenic | 30.0% |
| AATGGAAGAAAATCTATGGA+TGG | + | chr1_3:52480332-52480351 | None:intergenic | 30.0% | |
| AATATAGGGGAATTTGAAGA+TGG | + | chr1_3:52480399-52480418 | None:intergenic | 30.0% | |
| !! | GGATTTTGGTGAGAAAATAT+AGG | + | chr1_3:52480414-52480433 | None:intergenic | 30.0% |
| AATCTTTATCGAGAAAAGGT+GGG | + | chr1_3:52480435-52480454 | None:intergenic | 30.0% | |
| TGAGAATCTTTATCGAGAAA+AGG | + | chr1_3:52480439-52480458 | None:intergenic | 30.0% | |
| ! | AGATGATGATGATGAATTTG+AGG | + | chr1_3:52480582-52480601 | None:intergenic | 30.0% |
| !!! | CGATTTATTTTTACCCTGAT+GGG | - | chr1_3:52480771-52480790 | Msa0124640:intron | 30.0% |
| ! | GCTTTTTGAATTAACGCTTT+TGG | - | chr1_3:52480868-52480887 | Msa0124640:intron | 30.0% |
| !! | AGGTTCATAGTCATTTTGAT+AGG | - | chr1_3:52480915-52480934 | Msa0124640:intron | 30.0% |
| TGATTCTAATTCCTTATCGA+GGG | - | chr1_3:52481054-52481073 | Msa0124640:intron | 30.0% | |
| ! | GGAATGATAGGAATTTTTAC+TGG | - | chr1_3:52481174-52481193 | Msa0124640:CDS | 30.0% |
| TTACATACTTATGCTTCTGT+GGG | - | chr1_3:52481205-52481224 | Msa0124640:CDS | 30.0% | |
| TTCTGAACATTGTTGGAAAA+GGG | - | chr1_3:52481293-52481312 | Msa0124640:CDS | 30.0% | |
| !!! | CAAACGTTTGATTCGTTTTT+TGG | - | chr1_3:52481402-52481421 | Msa0124640:CDS | 30.0% |
| !!! | AACGTTTGATTCGTTTTTTG+GGG | - | chr1_3:52481404-52481423 | Msa0124640:CDS | 30.0% |
| ATAGTCTAACTTCAAAACCA+AGG | + | chr1_3:52481446-52481465 | None:intergenic | 30.0% | |
| !!! | TGCATTTGTTGATTTTGGTT+TGG | - | chr1_3:52481537-52481556 | Msa0124640:intron | 30.0% |
| !!! | ATGGAACTTTTTTGTGACAA+TGG | - | chr1_3:52481587-52481606 | Msa0124640:intron | 30.0% |
| CACTAAGACAGTTATCTTTA+AGG | + | chr1_3:52481708-52481727 | None:intergenic | 30.0% | |
| TTGGAATCGAAAATGTTCTA+GGG | + | chr1_3:52481771-52481790 | None:intergenic | 30.0% | |
| ATTGGAATCGAAAATGTTCT+AGG | + | chr1_3:52481772-52481791 | None:intergenic | 30.0% | |
| !!! | GATGTGAATTTTGAAGTGAA+TGG | - | chr1_3:52481850-52481869 | Msa0124640:intron | 30.0% |
| ! | AGTGAATGGTGAAATTTTTG+CGG | - | chr1_3:52481864-52481883 | Msa0124640:intron | 30.0% |
| ! | AATTTTTGCGGCTCATAAAT+TGG | - | chr1_3:52481876-52481895 | Msa0124640:intron | 30.0% |
| CGAAGTTCAATATCTATATC+AGG | + | chr1_3:52482112-52482131 | None:intergenic | 30.0% | |
| TTATGCCTCCAAATGTTAAT+TGG | - | chr1_3:52482459-52482478 | Msa0124640:CDS | 30.0% | |
| !!! | ACTGGTATTTTTTCAGATTG+AGG | - | chr1_3:52482489-52482508 | Msa0124640:CDS | 30.0% |
| ACTTGTGTTTAATGTGTTTG+TGG | - | chr1_3:52482755-52482774 | Msa0124640:intron | 30.0% | |
| CATTGCTGCATGTTATATAT+TGG | - | chr1_3:52482873-52482892 | Msa0124640:intron | 30.0% | |
| TTACTGGGATTAACTCAAAA+TGG | - | chr1_3:52482921-52482940 | Msa0124640:intron | 30.0% | |
| TACTGGGATTAACTCAAAAT+GGG | - | chr1_3:52482922-52482941 | Msa0124640:intron | 30.0% | |
| ! | TCTGTTTGAAATTCATTGCA+AGG | - | chr1_3:52483110-52483129 | Msa0124640:intron | 30.0% |
| ! | CGTATGCTTATGCTTTATTA+AGG | - | chr1_3:52483313-52483332 | Msa0124640:intron | 30.0% |
| AAATCAAGCTTAGTGACTTT+GGG | - | chr1_3:52483374-52483393 | Msa0124640:CDS | 30.0% | |
| AATTAGGATGCTGTATATGA+TGG | - | chr1_3:52483432-52483451 | Msa0124640:CDS | 30.0% | |
| TACAAATTTACCAACGCTTT+GGG | + | chr1_3:52483472-52483491 | None:intergenic | 30.0% | |
| ATACAAATTTACCAACGCTT+TGG | + | chr1_3:52483473-52483492 | None:intergenic | 30.0% | |
| TCACAGCTGAAAAAAAGAAA+GGG | + | chr1_3:52483576-52483595 | None:intergenic | 30.0% | |
| ATCACAGCTGAAAAAAAGAA+AGG | + | chr1_3:52483577-52483596 | None:intergenic | 30.0% | |
| ! | CTGTAATTTTTGAATGTGAG+TGG | + | chr1_3:52483807-52483826 | None:intergenic | 30.0% |
| TGTAAATGTAACATGTTTGG+TGG | - | chr1_3:52483909-52483928 | Msa0124640:five_prime_UTR | 30.0% | |
| !! | GAAATTCTAGGGTTTGGATT+TGG | + | chr1_3:52480377-52480396 | None:intergenic | 35.0% |
| !! | AAGATGGAAATTCTAGGGTT+TGG | + | chr1_3:52480383-52480402 | None:intergenic | 35.0% |
| GAATCTTTATCGAGAAAAGG+TGG | + | chr1_3:52480436-52480455 | None:intergenic | 35.0% | |
| ! | GATGATGATGAATTTGAGGA+TGG | + | chr1_3:52480578-52480597 | None:intergenic | 35.0% |
| CTCACATAGGTTCAAGATAA+CGG | - | chr1_3:52480670-52480689 | Msa0124640:CDS | 35.0% | |
| TCACATAGGTTCAAGATAAC+GGG | - | chr1_3:52480671-52480690 | Msa0124640:CDS | 35.0% | |
| TATTCACTCTCAAAAGGGAT+TGG | - | chr1_3:52480695-52480714 | Msa0124640:CDS | 35.0% | |
| TCTCAAAAGGGATTGGAATT+GGG | - | chr1_3:52480702-52480721 | Msa0124640:CDS | 35.0% | |
| !!! | GCGATTTATTTTTACCCTGA+TGG | - | chr1_3:52480770-52480789 | Msa0124640:intron | 35.0% |
| !! | TAGTCATTTTGATAGGACGT+TGG | - | chr1_3:52480922-52480941 | Msa0124640:intron | 35.0% |
| CCACGATATTTCAACGTATA+AGG | + | chr1_3:52480956-52480975 | None:intergenic | 35.0% | |
| CCTTATACGTTGAAATATCG+TGG | - | chr1_3:52480953-52480972 | Msa0124640:intron | 35.0% | |
| CTGATTCTAATTCCTTATCG+AGG | - | chr1_3:52481053-52481072 | Msa0124640:intron | 35.0% | |
| TGTTTGTGAAGGTTTAAGCT+TGG | - | chr1_3:52481080-52481099 | Msa0124640:intron | 35.0% | |
| TTCTTGAATTGACCCAATGT+TGG | - | chr1_3:52481145-52481164 | Msa0124640:intron | 35.0% | |
| CATTCCAAGTTACCAACATT+GGG | + | chr1_3:52481160-52481179 | None:intergenic | 35.0% | |
| TCATTCCAAGTTACCAACAT+TGG | + | chr1_3:52481161-52481180 | None:intergenic | 35.0% | |
| !! | TGTTGGTAACTTGGAATGAT+AGG | - | chr1_3:52481162-52481181 | Msa0124640:intron | 35.0% |
| GTTACATACTTATGCTTCTG+TGG | - | chr1_3:52481204-52481223 | Msa0124640:CDS | 35.0% | |
| !! | ATGTGAGTTCTGAACATTGT+TGG | - | chr1_3:52481286-52481305 | Msa0124640:CDS | 35.0% |
| ! | GTTCTGAACATTGTTGGAAA+AGG | - | chr1_3:52481292-52481311 | Msa0124640:CDS | 35.0% |
| TCTGAACATTGTTGGAAAAG+GGG | - | chr1_3:52481294-52481313 | Msa0124640:CDS | 35.0% | |
| !!! | ACGTTTGATTCGTTTTTTGG+GGG | - | chr1_3:52481405-52481424 | Msa0124640:CDS | 35.0% |
| !!! | CTTTTTTGTGACAATGGAAG+AGG | - | chr1_3:52481593-52481612 | Msa0124640:intron | 35.0% |
| !! | GAAGAGGTACAGTTTTCTAA+AGG | - | chr1_3:52481609-52481628 | Msa0124640:intron | 35.0% |
| CTTAGTGTTAATTGTAGCGT+TGG | - | chr1_3:52481721-52481740 | Msa0124640:intron | 35.0% | |
| CCAATAGTAGAAGGTGATAT+TGG | + | chr1_3:52481790-52481809 | None:intergenic | 35.0% | |
| CCAATATCACCTTCTACTAT+TGG | - | chr1_3:52481787-52481806 | Msa0124640:intron | 35.0% | |
| !! | AAAAGCTGAGCTCTAAAAAC+AGG | + | chr1_3:52481919-52481938 | None:intergenic | 35.0% |
| !!! | GTTTTTAGAGCTCAGCTTTT+TGG | - | chr1_3:52481919-52481938 | Msa0124640:intron | 35.0% |
| TGTGTGTTCTGATCTTTCAT+AGG | + | chr1_3:52481946-52481965 | None:intergenic | 35.0% | |
| ATATCAGGACAGAGACAAAA+AGG | + | chr1_3:52482097-52482116 | None:intergenic | 35.0% | |
| ATATACTCGCAAATTGCAAC+TGG | + | chr1_3:52482313-52482332 | None:intergenic | 35.0% | |
| TTGCGAGTATATTTGACTGT+TGG | - | chr1_3:52482321-52482340 | Msa0124640:CDS | 35.0% | |
| ! | ACATTTGGAGGCATAAATGA+GGG | + | chr1_3:52482455-52482474 | None:intergenic | 35.0% |
| ! | AACATTTGGAGGCATAAATG+AGG | + | chr1_3:52482456-52482475 | None:intergenic | 35.0% |
| ! | AAAAAGTGCAAACGAGTTCT+TGG | + | chr1_3:52482540-52482559 | None:intergenic | 35.0% |
| AAACAGGAACCAAGCAATAA+AGG | + | chr1_3:52482635-52482654 | None:intergenic | 35.0% | |
| TGTAAACTGCAGAAAGTCAA+AGG | + | chr1_3:52482716-52482735 | None:intergenic | 35.0% | |
| AGATGTTGCAATAAATACCG+TGG | - | chr1_3:52483036-52483055 | Msa0124640:intron | 35.0% | |
| ATGTGCAATATTAGGGGAAT+TGG | - | chr1_3:52483207-52483226 | Msa0124640:intron | 35.0% | |
| TGTGCAATATTAGGGGAATT+GGG | - | chr1_3:52483208-52483227 | Msa0124640:intron | 35.0% | |
| ATAGCAACATACAGACTTTC+AGG | + | chr1_3:52483245-52483264 | None:intergenic | 35.0% | |
| CAAATCAAGCTTAGTGACTT+TGG | - | chr1_3:52483373-52483392 | Msa0124640:CDS | 35.0% | |
| GGTCTGGATGAAGAATAAAT+AGG | + | chr1_3:52483527-52483546 | None:intergenic | 35.0% | |
| ! | TTCAGTTGATATCATAGGTC+TGG | + | chr1_3:52483543-52483562 | None:intergenic | 35.0% |
| AAAGCTCAGTCAAAACAGAT+GGG | + | chr1_3:52483636-52483655 | None:intergenic | 35.0% | |
| AAAAGCTCAGTCAAAACAGA+TGG | + | chr1_3:52483637-52483656 | None:intergenic | 35.0% | |
| !!! | ATCTGTTTTGACTGAGCTTT+TGG | - | chr1_3:52483636-52483655 | Msa0124640:CDS | 35.0% |
| CTATACTGTGAAAAATGACC+AGG | - | chr1_3:52483763-52483782 | Msa0124640:exon | 35.0% | |
| ! | TTTTGAATGTGAGTGGAACA+GGG | + | chr1_3:52483800-52483819 | None:intergenic | 35.0% |
| ! | TTTTTGAATGTGAGTGGAAC+AGG | + | chr1_3:52483801-52483820 | None:intergenic | 35.0% |
| TCAAAAATTACAGTGAACCG+TGG | - | chr1_3:52483814-52483833 | Msa0124640:five_prime_UTR | 35.0% | |
| ! | TCTATGGATGGTGGTGATAA+AGG | + | chr1_3:52480320-52480339 | None:intergenic | 40.0% |
| GGAAGAAAATCTATGGATGG+TGG | + | chr1_3:52480329-52480348 | None:intergenic | 40.0% | |
| ! | ATCGAGAAAAGGTGGGATTT+TGG | + | chr1_3:52480428-52480447 | None:intergenic | 40.0% |
| AGAATTCAAACCCGATCTGT+GGG | + | chr1_3:52480475-52480494 | None:intergenic | 40.0% | |
| GGTGAATTGGGGTGAAATTA+GGG | + | chr1_3:52480509-52480528 | None:intergenic | 40.0% | |
| AGGTGAATTGGGGTGAAATT+AGG | + | chr1_3:52480510-52480529 | None:intergenic | 40.0% | |
| ! | GAGGTTGTTGATGGAATTGA+GGG | + | chr1_3:52480620-52480639 | None:intergenic | 40.0% |
| CACATAGGTTCAAGATAACG+GGG | - | chr1_3:52480672-52480691 | Msa0124640:CDS | 40.0% | |
| CTCTCAAAAGGGATTGGAAT+TGG | - | chr1_3:52480701-52480720 | Msa0124640:CDS | 40.0% | |
| ! | TTAACGCTTTTGGATCAGAG+TGG | - | chr1_3:52480878-52480897 | Msa0124640:intron | 40.0% |
| ! | TAACGCTTTTGGATCAGAGT+GGG | - | chr1_3:52480879-52480898 | Msa0124640:intron | 40.0% |
| TGAAATATCGTGGTAGCATG+TGG | - | chr1_3:52480963-52480982 | Msa0124640:intron | 40.0% | |
| TTGTGAAGGTTTAAGCTTGG+TGG | - | chr1_3:52481083-52481102 | Msa0124640:intron | 40.0% | |
| TGTGAAGGTTTAAGCTTGGT+GGG | - | chr1_3:52481084-52481103 | Msa0124640:intron | 40.0% | |
| !! | TTGACCCAATGTTGGTAACT+TGG | - | chr1_3:52481153-52481172 | Msa0124640:intron | 40.0% |
| CTGAACATTGTTGGAAAAGG+GGG | - | chr1_3:52481295-52481314 | Msa0124640:CDS | 40.0% | |
| TGAACATTGTTGGAAAAGGG+GGG | - | chr1_3:52481296-52481315 | Msa0124640:CDS | 40.0% | |
| !!! | TTTGATTCGTTTTTTGGGGG+TGG | - | chr1_3:52481408-52481427 | Msa0124640:CDS | 40.0% |
| !!! | TTGATTCGTTTTTTGGGGGT+GGG | - | chr1_3:52481409-52481428 | Msa0124640:CDS | 40.0% |
| TTCCTGCTGAATTGAGTTCA+TGG | - | chr1_3:52481568-52481587 | Msa0124640:intron | 40.0% | |
| TTCCATGAACTCAATTCAGC+AGG | + | chr1_3:52481573-52481592 | None:intergenic | 40.0% | |
| AACTGGTGACCAATAGTAGA+AGG | + | chr1_3:52481799-52481818 | None:intergenic | 40.0% | |
| TCTACTATTGGTCACCAGTT+TGG | - | chr1_3:52481799-52481818 | Msa0124640:intron | 40.0% | |
| CTACTATTGGTCACCAGTTT+GGG | - | chr1_3:52481800-52481819 | Msa0124640:intron | 40.0% | |
| TTTCCAAAAGCTTCCCAAAC+TGG | + | chr1_3:52481816-52481835 | None:intergenic | 40.0% | |
| !! | TTTGGGAAGCTTTTGGAAAG+TGG | - | chr1_3:52481817-52481836 | Msa0124640:intron | 40.0% |
| GTTCACTGAGATGTGAGATT+TGG | - | chr1_3:52482514-52482533 | Msa0124640:CDS | 40.0% | |
| GCTAGAACAACTCAACAAAC+AGG | + | chr1_3:52482651-52482670 | None:intergenic | 40.0% | |
| ! | GTTTGTTGAGTTGTTCTAGC+TGG | - | chr1_3:52482651-52482670 | Msa0124640:intron | 40.0% |
| AAGGCGGTTTGAAAAACCAA+TGG | + | chr1_3:52482697-52482716 | None:intergenic | 40.0% | |
| AAACTGCAGAAAGTCAAAGG+CGG | + | chr1_3:52482713-52482732 | None:intergenic | 40.0% | |
| AAAATGGGCAACTACCTTGA+TGG | - | chr1_3:52482937-52482956 | Msa0124640:intron | 40.0% | |
| GGTATGCCTTAGATAGACTT+AGG | - | chr1_3:52482987-52483006 | Msa0124640:intron | 40.0% | |
| CATCAGCCTAAGTCTATCTA+AGG | + | chr1_3:52482996-52483015 | None:intergenic | 40.0% | |
| CAAAGCTAAAGTTGTAGCCA+CGG | + | chr1_3:52483056-52483075 | None:intergenic | 40.0% | |
| !!! | AACACACCTCTGAGATTTTC+AGG | + | chr1_3:52483136-52483155 | None:intergenic | 40.0% |
| AGGGGAATTGGGACATTAAA+AGG | - | chr1_3:52483219-52483238 | Msa0124640:intron | 40.0% | |
| AGCATACGATAGTCAACAAC+AGG | + | chr1_3:52483301-52483320 | None:intergenic | 40.0% | |
| ! | TACAGTTTTACCCAAAGCGT+TGG | - | chr1_3:52483459-52483478 | Msa0124640:CDS | 40.0% |
| ! | TGATGGTTTCGAGTACTTGA+AGG | - | chr1_3:52483603-52483622 | Msa0124640:CDS | 40.0% |
| GGCTAGATTTACTGAGCATT+CGG | - | chr1_3:52483666-52483685 | Msa0124640:CDS | 40.0% | |
| AGGAACGAAGCAATACTTGA+TGG | - | chr1_3:52483706-52483725 | Msa0124640:CDS | 40.0% | |
| ! | CTTGATGGCAGTGATGTAAA+TGG | - | chr1_3:52483721-52483740 | Msa0124640:CDS | 40.0% |
| ATGGCAGTGATGTAAATGGA+AGG | - | chr1_3:52483725-52483744 | Msa0124640:CDS | 40.0% | |
| GGGAGAAGATCAACATTCAT+AGG | - | chr1_3:52483842-52483861 | Msa0124640:five_prime_UTR | 40.0% | |
| AAACCCGATCTGTGGGAATT+GGG | + | chr1_3:52480468-52480487 | None:intergenic | 45.0% | |
| CAGAATTCAAACCCGATCTG+TGG | + | chr1_3:52480476-52480495 | None:intergenic | 45.0% | |
| AGATTCTTCGCGAAACAACG+AGG | - | chr1_3:52480552-52480571 | Msa0124640:CDS | 45.0% | |
| ! | GTTGTTGATGGAATTGAGGG+TGG | + | chr1_3:52480617-52480636 | None:intergenic | 45.0% |
| ! | GGAGGTTGTTGATGGAATTG+AGG | + | chr1_3:52480621-52480640 | None:intergenic | 45.0% |
| GATGTTGAGGAGGTTGTTGA+TGG | + | chr1_3:52480629-52480648 | None:intergenic | 45.0% | |
| TCGATAACCGACACCATCAA+AGG | - | chr1_3:52480647-52480666 | Msa0124640:CDS | 45.0% | |
| !! | ATGTGAGCCTTTGATGGTGT+CGG | + | chr1_3:52480657-52480676 | None:intergenic | 45.0% |
| ACACCATCAAAGGCTCACAT+AGG | - | chr1_3:52480657-52480676 | Msa0124640:CDS | 45.0% | |
| GAACCTATGTGAGCCTTTGA+TGG | + | chr1_3:52480663-52480682 | None:intergenic | 45.0% | |
| ! | ACGGGGTATTCACTCTCAAA+AGG | - | chr1_3:52480689-52480708 | Msa0124640:CDS | 45.0% |
| ! | CGGGGTATTCACTCTCAAAA+GGG | - | chr1_3:52480690-52480709 | Msa0124640:CDS | 45.0% |
| !! | GCATCTGAGATTTTCACCGT+TGG | - | chr1_3:52480734-52480753 | Msa0124640:intron | 45.0% |
| !! | TCTGAGATTTTCACCGTTGG+TGG | - | chr1_3:52480737-52480756 | Msa0124640:intron | 45.0% |
| ! | CTGAGATTTTCACCGTTGGT+GGG | - | chr1_3:52480738-52480757 | Msa0124640:intron | 45.0% |
| GAGTGAAGGGACTGATGTTA+GGG | - | chr1_3:52480844-52480863 | Msa0124640:intron | 45.0% | |
| TTTGATAGGACGTTGGAGAG+TGG | - | chr1_3:52480929-52480948 | Msa0124640:intron | 45.0% | |
| CACAAACACTACCCTCGATA+AGG | + | chr1_3:52481068-52481087 | None:intergenic | 45.0% | |
| ATCGAGGGTAGTGTTTGTGA+AGG | - | chr1_3:52481069-52481088 | Msa0124640:intron | 45.0% | |
| !!! | TGATTCGTTTTTTGGGGGTG+GGG | - | chr1_3:52481410-52481429 | Msa0124640:CDS | 45.0% |
| !! | ATTGTAGCGTTGGTGTTGTG+AGG | - | chr1_3:52481731-52481750 | Msa0124640:intron | 45.0% |
| ! | TCACCAGTTTGGGAAGCTTT+TGG | - | chr1_3:52481810-52481829 | Msa0124640:intron | 45.0% |
| ! | TATCGAGGCTCCTGTTTTCA+AGG | - | chr1_3:52481984-52482003 | Msa0124640:intron | 45.0% |
| TCGCAAATTGCAACTGGCAA+GGG | + | chr1_3:52482307-52482326 | None:intergenic | 45.0% | |
| CTGACATGCAAGAGCTTACT+GGG | - | chr1_3:52482906-52482925 | Msa0124640:intron | 45.0% | |
| ! | CGTGGCTACAACTTTAGCTT+TGG | - | chr1_3:52483054-52483073 | Msa0124640:intron | 45.0% |
| CTGCTTTCAGCTGGAAACAA+TGG | + | chr1_3:52483090-52483109 | None:intergenic | 45.0% | |
| TCAAACAGACTGCTTTCAGC+TGG | + | chr1_3:52483099-52483118 | None:intergenic | 45.0% | |
| TCAGCTGTGATGCAAACTGA+TGG | - | chr1_3:52483586-52483605 | Msa0124640:CDS | 45.0% | |
| !!! | GACTGAGCTTTTGGAGTATG+TGG | - | chr1_3:52483645-52483664 | Msa0124640:CDS | 45.0% |
| GCAGTGATGTAAATGGAAGG+CGG | - | chr1_3:52483728-52483747 | Msa0124640:CDS | 45.0% | |
| CAGTGATGTAAATGGAAGGC+GGG | - | chr1_3:52483729-52483748 | Msa0124640:CDS | 45.0% | |
| TTACAGTGAACCGTGGATAG+AGG | - | chr1_3:52483821-52483840 | Msa0124640:five_prime_UTR | 45.0% | |
| TACAGTGAACCGTGGATAGA+GGG | - | chr1_3:52483822-52483841 | Msa0124640:five_prime_UTR | 45.0% | |
| TGATCTTCTCCCTCTATCCA+CGG | + | chr1_3:52483834-52483853 | None:intergenic | 45.0% | |
| !! | AACATGTTTGGTGGTGTTGC+AGG | - | chr1_3:52483918-52483937 | Msa0124640:five_prime_UTR | 45.0% |
| GTTGCAGGTTTGTCTTCGAT+AGG | - | chr1_3:52483933-52483952 | Msa0124640:five_prime_UTR | 45.0% | |
| ! | AGTTGATGTGTCACGCGCTA+TGG | + | chr1_3:52480295-52480314 | None:intergenic | 50.0% |
| GATCTGTGGGAATTGGGATC+GGG | + | chr1_3:52480462-52480481 | None:intergenic | 50.0% | |
| CGATCTGTGGGAATTGGGAT+CGG | + | chr1_3:52480463-52480482 | None:intergenic | 50.0% | |
| CGATCCCAATTCCCACAGAT+CGG | - | chr1_3:52480461-52480480 | Msa0124640:three_prime_UTR | 50.0% | |
| GATCCCAATTCCCACAGATC+GGG | - | chr1_3:52480462-52480481 | Msa0124640:three_prime_UTR | 50.0% | |
| CAAACCCGATCTGTGGGAAT+TGG | + | chr1_3:52480469-52480488 | None:intergenic | 50.0% | |
| AGCCACGAGAAGGTGAATTG+GGG | + | chr1_3:52480520-52480539 | None:intergenic | 50.0% | |
| GAGCCACGAGAAGGTGAATT+GGG | + | chr1_3:52480521-52480540 | None:intergenic | 50.0% | |
| AGAGCCACGAGAAGGTGAAT+TGG | + | chr1_3:52480522-52480541 | None:intergenic | 50.0% | |
| ACCTTCTCGTGGCTCTCTTA+TGG | - | chr1_3:52480526-52480545 | Msa0124640:exon | 50.0% | |
| CCTTCTCGTGGCTCTCTTAT+GGG | - | chr1_3:52480527-52480546 | Msa0124640:exon | 50.0% | |
| GATGGAATTGAGGGTGGTGA+TGG | + | chr1_3:52480611-52480630 | None:intergenic | 50.0% | |
| GTCGGTTATCGATGTTGAGG+AGG | + | chr1_3:52480639-52480658 | None:intergenic | 50.0% | |
| !! | GGTGTCGGTTATCGATGTTG+AGG | + | chr1_3:52480642-52480661 | None:intergenic | 50.0% |
| TTACCCTGATGGGAAAAGCG+TGG | - | chr1_3:52480781-52480800 | Msa0124640:intron | 50.0% | |
| CGAGTGAAGGGACTGATGTT+AGG | - | chr1_3:52480843-52480862 | Msa0124640:intron | 50.0% | |
| TGGATCAGAGTGGGAAAGAG+AGG | - | chr1_3:52480888-52480907 | Msa0124640:intron | 50.0% | |
| ! | GAGTGGGAAAGAGAGGCATA+AGG | - | chr1_3:52480895-52480914 | Msa0124640:intron | 50.0% |
| TGTTGGAAAAGGGGGGTGAA+AGG | - | chr1_3:52481303-52481322 | Msa0124640:CDS | 50.0% | |
| TGTTGTGAGGTCACACACAG+AGG | - | chr1_3:52481744-52481763 | Msa0124640:intron | 50.0% | |
| GTTGTGAGGTCACACACAGA+GGG | - | chr1_3:52481745-52481764 | Msa0124640:intron | 50.0% | |
| AACTAATGCCAGAAGCAGGC+AGG | + | chr1_3:52482204-52482223 | None:intergenic | 50.0% | |
| TGCCTGCTTCTGGCATTAGT+TGG | - | chr1_3:52482203-52482222 | Msa0124640:intron | 50.0% | |
| GCCTGCTTCTGGCATTAGTT+GGG | - | chr1_3:52482204-52482223 | Msa0124640:intron | 50.0% | |
| ACCCAACTAATGCCAGAAGC+AGG | + | chr1_3:52482208-52482227 | None:intergenic | 50.0% | |
| CAAATTGCAACTGGCAAGGG+TGG | + | chr1_3:52482304-52482323 | None:intergenic | 50.0% | |
| CTCGCAAATTGCAACTGGCA+AGG | + | chr1_3:52482308-52482327 | None:intergenic | 50.0% | |
| GAGGCATAAATGAGGGAAGC+GGG | + | chr1_3:52482448-52482467 | None:intergenic | 50.0% | |
| ! | GGAGGCATAAATGAGGGAAG+CGG | + | chr1_3:52482449-52482468 | None:intergenic | 50.0% |
| CCAGTAAGCTCTTGCATGTC+AGG | + | chr1_3:52482908-52482927 | None:intergenic | 50.0% | |
| CCTGACATGCAAGAGCTTAC+TGG | - | chr1_3:52482905-52482924 | Msa0124640:intron | 50.0% | |
| TAGCAGATGCTGAGCCATCA+AGG | + | chr1_3:52482954-52482973 | None:intergenic | 50.0% | |
| ATCTGCTAGCAGCAGCTGAT+CGG | - | chr1_3:52482966-52482985 | Msa0124640:intron | 50.0% | |
| GCAAGGCCTGAAAATCTCAG+AGG | - | chr1_3:52483127-52483146 | Msa0124640:intron | 50.0% | |
| CTTCGTTCCTATGCTTGCAC+AGG | + | chr1_3:52483696-52483715 | None:intergenic | 50.0% | |
| CACCCCAATTCACCTTCTCG+TGG | - | chr1_3:52480515-52480534 | Msa0124640:exon | 55.0% | |
| CCCATAAGAGAGCCACGAGA+AGG | + | chr1_3:52480530-52480549 | None:intergenic | 55.0% | |
| ! | TCACCGTTGGTGGGTACGAA+TGG | - | chr1_3:52480747-52480766 | Msa0124640:intron | 55.0% |
| ! | CACCGTTGGTGGGTACGAAT+GGG | - | chr1_3:52480748-52480767 | Msa0124640:intron | 55.0% |
| ! | CCTCCACGCTTTTCCCATCA+GGG | + | chr1_3:52480787-52480806 | None:intergenic | 55.0% |
| ! | TCCTCCACGCTTTTCCCATC+AGG | + | chr1_3:52480788-52480807 | None:intergenic | 55.0% |
| TTCATCGCGCTTGCGAGTGA+AGG | - | chr1_3:52480830-52480849 | Msa0124640:intron | 55.0% | |
| TCATCGCGCTTGCGAGTGAA+GGG | - | chr1_3:52480831-52480850 | Msa0124640:intron | 55.0% | |
| !!! | TTCGTTTTTTGGGGGTGGGG+TGG | - | chr1_3:52481413-52481432 | Msa0124640:CDS | 55.0% |
| !!! | TCGTTTTTTGGGGGTGGGGT+GGG | - | chr1_3:52481414-52481433 | Msa0124640:CDS | 55.0% |
| GGCAGGATTGGGCACTAAGT+TGG | + | chr1_3:52482187-52482206 | None:intergenic | 55.0% | |
| TGCCAGAAGCAGGCAGGATT+GGG | + | chr1_3:52482198-52482217 | None:intergenic | 55.0% | |
| ATGCCAGAAGCAGGCAGGAT+TGG | + | chr1_3:52482199-52482218 | None:intergenic | 55.0% | |
| CGGACTTCCTGTGCAAGCAT+AGG | - | chr1_3:52483686-52483705 | Msa0124640:CDS | 55.0% | |
| ! | AACAGGGTTCTCTGGAGACC+TGG | + | chr1_3:52483784-52483803 | None:intergenic | 55.0% |
| GTGAGTGGAACAGGGTTCTC+TGG | + | chr1_3:52483792-52483811 | None:intergenic | 55.0% | |
| CGCCCATTCGTACCCACCAA+CGG | + | chr1_3:52480753-52480772 | None:intergenic | 60.0% | |
| ! | CCCTGATGGGAAAAGCGTGG+AGG | - | chr1_3:52480784-52480803 | Msa0124640:intron | 60.0% |
| TGCCCAATCCTGCCTGCTTC+TGG | - | chr1_3:52482193-52482212 | Msa0124640:intron | 60.0% | |
| ACGCGCTATGGACTTGCGCG+TGG | + | chr1_3:52480283-52480302 | None:intergenic | 65.0% | |
| !! | TTTTGGGGGTGGGGTGGGAG+AGG | - | chr1_3:52481419-52481438 | Msa0124640:CDS | 65.0% |
| TTTGGGGGTGGGGTGGGAGA+GGG | - | chr1_3:52481420-52481439 | Msa0124640:CDS | 65.0% | |
| GGTGGGGTGGGAGAGGGCCT+TGG | - | chr1_3:52481426-52481445 | Msa0124640:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 52480261 | 52484050 | 52480261 | ID=Msa0124640;Name=Msa0124640 |
| chr1_3 | mRNA | 52480261 | 52484050 | 52480261 | ID=Msa0124640-mRNA-1;Parent=Msa0124640;Name=Msa0124640-mRNA-1;_AED=0.17;_eAED=0.17;_QI=284|1|1|1|1|1|4|270|418 |
| chr1_3 | exon | 52480261 | 52480721 | 52480261 | ID=Msa0124640-mRNA-1:exon:16117;Parent=Msa0124640-mRNA-1 |
| chr1_3 | exon | 52481163 | 52481439 | 52481163 | ID=Msa0124640-mRNA-1:exon:16116;Parent=Msa0124640-mRNA-1 |
| chr1_3 | exon | 52482306 | 52482654 | 52482306 | ID=Msa0124640-mRNA-1:exon:16115;Parent=Msa0124640-mRNA-1 |
| chr1_3 | exon | 52483327 | 52484050 | 52483327 | ID=Msa0124640-mRNA-1:exon:16114;Parent=Msa0124640-mRNA-1 |
| chr1_3 | five_prime_UTR | 52483767 | 52484050 | 52483767 | ID=Msa0124640-mRNA-1:five_prime_utr;Parent=Msa0124640-mRNA-1 |
| chr1_3 | CDS | 52483327 | 52483766 | 52483327 | ID=Msa0124640-mRNA-1:cds;Parent=Msa0124640-mRNA-1 |
| chr1_3 | CDS | 52482306 | 52482654 | 52482306 | ID=Msa0124640-mRNA-1:cds;Parent=Msa0124640-mRNA-1 |
| chr1_3 | CDS | 52481163 | 52481439 | 52481163 | ID=Msa0124640-mRNA-1:cds;Parent=Msa0124640-mRNA-1 |
| chr1_3 | CDS | 52480531 | 52480721 | 52480531 | ID=Msa0124640-mRNA-1:cds;Parent=Msa0124640-mRNA-1 |
| chr1_3 | three_prime_UTR | 52480261 | 52480530 | 52480261 | ID=Msa0124640-mRNA-1:three_prime_utr;Parent=Msa0124640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
