Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169980 | XP_003590793.2 | 98.652 | 371 | 5 | 0 | 1 | 371 | 99 | 469 | 0.0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169980 | sp|Q8VXY9|UAH_ARATH | 81.720 | 372 | 66 | 2 | 1 | 370 | 104 | 475 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169980 | G7I3Z0 | 98.652 | 371 | 5 | 0 | 1 | 371 | 99 | 469 | 0.0 | 747 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0169980 | Msa0529020 | 0.811313 | 7.451616e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169980 | MtrunA17_Chr1g0187131 | 98.652 | 371 | 5 | 0 | 1 | 371 | 99 | 469 | 0.0 | 747 |
| Msa0169980 | MtrunA17_Chr2g0296941 | 31.783 | 387 | 235 | 6 | 4 | 363 | 90 | 474 | 2.15e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169980 | AT5G43600.1 | 81.720 | 372 | 66 | 2 | 1 | 370 | 104 | 475 | 0.0 | 605 |
| Msa0169980 | AT4G20070.1 | 31.888 | 392 | 238 | 6 | 4 | 368 | 136 | 525 | 9.29e-50 | 175 |
| Msa0169980 | AT4G20070.2 | 35.547 | 256 | 144 | 3 | 4 | 240 | 136 | 389 | 4.53e-35 | 133 |
Find 104 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCATGACTCTTTGTTTA+TGG | 0.075402 | 1_4:-53524504 | Msa0169980:CDS |
| TGCTTTGTGCAGCCGCTTAT+TGG | 0.159998 | 1_4:-53525768 | Msa0169980:intron |
| ACCCTCCACGTTAGACAAAA+AGG | 0.215814 | 1_4:+53523828 | None:intergenic |
| GATGCTGTTGGTAACATATT+TGG | 0.239325 | 1_4:-53526773 | Msa0169980:CDS |
| GAGAAACACGTCTTGGAATC+TGG | 0.290253 | 1_4:-53525117 | Msa0169980:CDS |
| TTGCAGCTCCTGCAAGTCTA+AGG | 0.299708 | 1_4:-53525445 | Msa0169980:CDS |
| AATTCAACCCTTAGACTTGC+AGG | 0.301726 | 1_4:+53525437 | None:intergenic |
| AGCAAATCGCACATAGAAAT+TGG | 0.316482 | 1_4:-53524957 | Msa0169980:intron |
| ATACTACTGAAGGGACAATT+TGG | 0.336534 | 1_4:+53523952 | None:intergenic |
| TTTATACTAGCAAACTCTTC+AGG | 0.337867 | 1_4:+53524016 | None:intergenic |
| TTGTGCAGCCGCTTATTGGC+TGG | 0.339371 | 1_4:-53525764 | Msa0169980:intron |
| CATAGAACAAGGGCCTATTC+TGG | 0.341073 | 1_4:-53525585 | Msa0169980:CDS |
| AGGATATATTAACATCCTTA+TGG | 0.343238 | 1_4:+53523727 | None:intergenic |
| TAGCAAACTCTTCAGGCTTA+TGG | 0.358386 | 1_4:+53524023 | None:intergenic |
| TTGCTCCAGGATGCAGTTGC+AGG | 0.363852 | 1_4:+53524994 | None:intergenic |
| AACAAGAGTAAAGTTTATAA+AGG | 0.388454 | 1_4:+53526854 | None:intergenic |
| GGAAAATATGATGGAGTTGT+TGG | 0.392292 | 1_4:-53526509 | Msa0169980:CDS |
| CATCGATGCTATACCTTACT+CGG | 0.392312 | 1_4:-53526531 | Msa0169980:CDS |
| GGGCTTGCTGCAGTTGCAAC+AGG | 0.394043 | 1_4:-53526560 | Msa0169980:CDS |
| TTAGATGCTGCAAGGTCTGC+TGG | 0.401111 | 1_4:-53525683 | Msa0169980:CDS |
| GAAAATATGATGGAGTTGTT+GGG | 0.402681 | 1_4:-53526508 | Msa0169980:CDS |
| TGACGACTGCTTCATCAGAT+AGG | 0.406360 | 1_4:+53524588 | None:intergenic |
| TGTTGCAACTGCAGCAAGCC+CGG | 0.407600 | 1_4:+53526562 | None:intergenic |
| GTGCCGTCCTTATGCCTAAC+AGG | 0.420469 | 1_4:-53525391 | Msa0169980:intron |
| TCGGAAGAACCCACACGCTT+TGG | 0.420823 | 1_4:-53525882 | Msa0169980:CDS |
| CATCTAAGAAGGATACGTTT+TGG | 0.421925 | 1_4:+53525699 | None:intergenic |
| CGCTTTGGAATAAGTTGCTT+AGG | 0.436892 | 1_4:-53525867 | Msa0169980:CDS |
| AAAGATAGCAGCCACCTGTT+AGG | 0.437842 | 1_4:+53525377 | None:intergenic |
| TGTGCAGCCGCTTATTGGCT+GGG | 0.439185 | 1_4:-53525763 | Msa0169980:intron |
| TGAGTTTCATATCATCAATC+AGG | 0.445316 | 1_4:-53524621 | Msa0169980:CDS |
| ATTTCTATGTGCGATTTGCT+AGG | 0.453162 | 1_4:+53524960 | None:intergenic |
| CTCAGTGAGCTTGACACCTC+GGG | 0.455549 | 1_4:+53524640 | None:intergenic |
| TGTTAATATATCCTTGTAGT+TGG | 0.464205 | 1_4:-53523718 | Msa0169980:three_prime_UTR |
| AGAAACACGTCTTGGAATCT+GGG | 0.466268 | 1_4:-53525116 | Msa0169980:CDS |
| GTCAAATGGTGTAAAAGTAT+TGG | 0.471269 | 1_4:-53523987 | Msa0169980:CDS |
| ATGACTCTTTGTTTATGGCC+AGG | 0.475673 | 1_4:-53524499 | Msa0169980:intron |
| TGTAGGGATGGCAGTGAACC+CGG | 0.479777 | 1_4:-53526581 | Msa0169980:intron |
| AGACGTGTTTCTCAACTGCC+AGG | 0.483332 | 1_4:+53525127 | None:intergenic |
| GAGCAGAAATGATGCTGGTC+TGG | 0.485198 | 1_4:-53525166 | Msa0169980:intron |
| AGTATAAAAGATATGTCAAA+TGG | 0.486176 | 1_4:-53524001 | Msa0169980:CDS |
| CTCGACTCAGGTATATCTAT+AGG | 0.486261 | 1_4:-53525482 | Msa0169980:intron |
| GTACCTTCGTCCTCCAGAAT+AGG | 0.486813 | 1_4:+53525572 | None:intergenic |
| GGTATCCTGCAACTGCATCC+TGG | 0.493387 | 1_4:-53524999 | Msa0169980:CDS |
| AGTCTAAGGGTTGAATTTGA+AGG | 0.495118 | 1_4:-53525431 | Msa0169980:CDS |
| TTGGTAACATATTTGGTCGT+TGG | 0.498780 | 1_4:-53526766 | Msa0169980:intron |
| CATAAACAAAGAGTCATGAT+AGG | 0.503371 | 1_4:+53524505 | None:intergenic |
| TTTCTATGTGCGATTTGCTA+GGG | 0.507359 | 1_4:+53524961 | None:intergenic |
| CCTTACTCGGGAAAATATGA+TGG | 0.509108 | 1_4:-53526518 | Msa0169980:CDS |
| GGCAGCCGCTGAATTAGCCC+TGG | 0.510323 | 1_4:-53525145 | Msa0169980:CDS |
| GTTGCAACTGCAGCAAGCCC+GGG | 0.512122 | 1_4:+53526563 | None:intergenic |
| AACCTATGTATATAACCATA+AGG | 0.515160 | 1_4:-53523742 | Msa0169980:three_prime_UTR |
| TAATTGCAGGGTGTCTCCAA+TGG | 0.515169 | 1_4:-53524378 | Msa0169980:intron |
| TTTCAAACCTAAAAGATCGT+TGG | 0.519496 | 1_4:-53525922 | Msa0169980:CDS |
| GCAGCCACCTGTTAGGCATA+AGG | 0.521384 | 1_4:+53525384 | None:intergenic |
| ATCCTTATGGTTATATACAT+AGG | 0.522704 | 1_4:+53523740 | None:intergenic |
| AGACCTTGCAGCATCTAAGA+AGG | 0.530450 | 1_4:+53525688 | None:intergenic |
| GAAGGCAATGGTGGCCATGC+AGG | 0.531611 | 1_4:-53525413 | Msa0169980:CDS |
| GGGATGCTATTGATTGCTCC+AGG | 0.535136 | 1_4:+53524981 | None:intergenic |
| CAGTAAATACCTTTGTAACA+TGG | 0.542692 | 1_4:+53524341 | None:intergenic |
| AGGGTTGAATTTGAAGGCAA+TGG | 0.544238 | 1_4:-53525425 | Msa0169980:CDS |
| AATTGCAGGGTGTCTCCAAT+GGG | 0.545945 | 1_4:-53524377 | Msa0169980:intron |
| GGCAGTTGAGAAACACGTCT+TGG | 0.547610 | 1_4:-53525124 | Msa0169980:CDS |
| GTTGATACCGTTGGCACTGT+TGG | 0.548107 | 1_4:-53525090 | Msa0169980:intron |
| AAAATATGATGGAGTTGTTG+GGG | 0.552492 | 1_4:-53526507 | Msa0169980:CDS |
| GACGACTGCTTCATCAGATA+GGG | 0.552858 | 1_4:+53524589 | None:intergenic |
| TTGGAATAAGTTGCTTAGGA+AGG | 0.556520 | 1_4:-53525863 | Msa0169980:intron |
| TAGACTTGCAGGAGCTGCAA+TGG | 0.558242 | 1_4:+53525448 | None:intergenic |
| ACTCAGTGAGCTTGACACCT+CGG | 0.561616 | 1_4:+53524639 | None:intergenic |
| TGCAGCTCCTGCAAGTCTAA+GGG | 0.569479 | 1_4:-53525444 | Msa0169980:CDS |
| TGCTGGTCTATCTGTAAGAG+AGG | 0.570001 | 1_4:-53526795 | Msa0169980:CDS |
| GCAACTTATTCCAAAGCGTG+TGG | 0.571770 | 1_4:+53525872 | None:intergenic |
| TCTGGGTCTGTTGATACCGT+TGG | 0.574941 | 1_4:-53525099 | Msa0169980:CDS |
| GTAGAATTGCACATAGAACA+AGG | 0.577230 | 1_4:-53525596 | Msa0169980:CDS |
| TCTGTAAGAGAGGATGCTGT+TGG | 0.578585 | 1_4:-53526785 | Msa0169980:CDS |
| GGAAGTCATATTATTTACAT+CGG | 0.582332 | 1_4:-53525901 | Msa0169980:CDS |
| CTGAAGGGACAATTTGGCTA+AGG | 0.584714 | 1_4:+53523958 | None:intergenic |
| GGAATGAAAATCATGCCCAT+TGG | 0.585366 | 1_4:+53524362 | None:intergenic |
| TATCATCAATCAGGATCCAC+CGG | 0.585926 | 1_4:-53524612 | Msa0169980:CDS |
| GTTGAATTTGAAGGCAATGG+TGG | 0.588343 | 1_4:-53525422 | Msa0169980:CDS |
| GTAGGGATGGCAGTGAACCC+GGG | 0.597353 | 1_4:-53526580 | Msa0169980:intron |
| GCATAAGGACGGCACCTGCA+TGG | 0.597367 | 1_4:+53525399 | None:intergenic |
| TGAAGCAGTCGTCAACGCAA+TGG | 0.598702 | 1_4:-53524579 | Msa0169980:CDS |
| ACATGGAGCAGAAATGATGC+TGG | 0.599655 | 1_4:-53525171 | Msa0169980:intron |
| ATTACATAAGATACTACTGA+AGG | 0.610162 | 1_4:+53523942 | None:intergenic |
| TCTCACTCCCAGCCAATAAG+CGG | 0.612263 | 1_4:+53525756 | None:intergenic |
| TTGACTATCATTGCAGAACA+AGG | 0.612714 | 1_4:-53523911 | Msa0169980:three_prime_UTR |
| ATACACAGTGGCCAACTACA+AGG | 0.614741 | 1_4:+53523707 | None:intergenic |
| CAACTTATTCCAAAGCGTGT+GGG | 0.616426 | 1_4:+53525873 | None:intergenic |
| TAACTTACCAACAGTGCCAA+CGG | 0.618887 | 1_4:+53525083 | None:intergenic |
| ATCGATGCTATACCTTACTC+GGG | 0.621735 | 1_4:-53526530 | Msa0169980:CDS |
| ACTGCTTCATCAGATAGGGC+CGG | 0.627902 | 1_4:+53524593 | None:intergenic |
| GACGTGTTTCTCAACTGCCA+GGG | 0.634598 | 1_4:+53525128 | None:intergenic |
| AGTAAGGTATAGCATCGATG+TGG | 0.640745 | 1_4:+53526534 | None:intergenic |
| GCTTCATCAGATAGGGCCGG+TGG | 0.641389 | 1_4:+53524596 | None:intergenic |
| TATCCTTCTTAGATGCTGCA+AGG | 0.652589 | 1_4:-53525691 | Msa0169980:CDS |
| TTACATAAGATACTACTGAA+GGG | 0.657232 | 1_4:+53523943 | None:intergenic |
| GTAAGGTATAGCATCGATGT+GGG | 0.659646 | 1_4:+53526535 | None:intergenic |
| AACTGCCAGGGCTAATTCAG+CGG | 0.666792 | 1_4:+53525140 | None:intergenic |
| CCACCTGTTAGGCATAAGGA+CGG | 0.675285 | 1_4:+53525388 | None:intergenic |
| TAGAATTGCACATAGAACAA+GGG | 0.675382 | 1_4:-53525595 | Msa0169980:CDS |
| AGATACTAGAGACATTGATG+AGG | 0.686727 | 1_4:-53524720 | Msa0169980:CDS |
| AGAACAAGGGCCTATTCTGG+AGG | 0.689732 | 1_4:-53525582 | Msa0169980:CDS |
| ATTAGAATAACTAAAACCCG+AGG | 0.693337 | 1_4:-53524656 | Msa0169980:CDS |
| GGGCCTATTCTGGAGGACGA+AGG | 0.703853 | 1_4:-53525575 | Msa0169980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATATAAGTAATTATA+AGG | + | chr1_4:53524525-53524544 | None:intergenic | 10.0% |
| !! | ATAGATATTTAATATGTAAT+TGG | - | chr1_4:53525810-53525829 | Msa0169980:intron | 10.0% |
| !!! | TCTTCATATTTTTAAGTAAA+AGG | - | chr1_4:53525246-53525265 | Msa0169980:intron | 15.0% |
| !!! | TGAGAATTTTAAATTCAAAA+AGG | + | chr1_4:53525336-53525355 | None:intergenic | 15.0% |
| !!! | AGTATTATTTTTAAATCACA+TGG | - | chr1_4:53525378-53525397 | Msa0169980:intron | 15.0% |
| !! | TGAAAAAAATAAACAACTAT+TGG | + | chr1_4:53525706-53525725 | None:intergenic | 15.0% |
| !!! | TTTGTTATTATTGCTGATAT+AGG | - | chr1_4:53524128-53524147 | Msa0169980:intron | 20.0% |
| !! | ATTATTTCAAAGGAAGAATT+AGG | - | chr1_4:53524279-53524298 | Msa0169980:intron | 20.0% |
| !! | TGGTTTAAACAATTATATGT+TGG | + | chr1_4:53524420-53524439 | None:intergenic | 20.0% |
| !!! | CAATAAATTGTTTTGAATGA+AGG | + | chr1_4:53525542-53525561 | None:intergenic | 20.0% |
| !! | TCAAAACAATTTATTGTACA+AGG | - | chr1_4:53525546-53525565 | Msa0169980:intron | 20.0% |
| !! | ATGTTTAAATACAAGTAGTT+TGG | - | chr1_4:53525676-53525695 | Msa0169980:CDS | 20.0% |
| !! | AAAAATAAACAACTATTGGA+TGG | + | chr1_4:53525702-53525721 | None:intergenic | 20.0% |
| !!! | CATGAATTTTTTCAATAACT+TGG | + | chr1_4:53525882-53525901 | None:intergenic | 20.0% |
| !!! | TTAAAATGTTTTAACTTAGC+AGG | - | chr1_4:53526108-53526127 | Msa0169980:intron | 20.0% |
| !! | AGTATAAAAGATATGTCAAA+TGG | - | chr1_4:53526565-53526584 | Msa0169980:CDS | 20.0% |
| ! | TAGGTATGTTAAAAATCTCA+TGG | - | chr1_4:53523744-53523763 | Msa0169980:three_prime_UTR | 25.0% |
| ! | AGGTATGTTAAAAATCTCAT+GGG | - | chr1_4:53523745-53523764 | Msa0169980:three_prime_UTR | 25.0% |
| !! | AAACCTTTTCAAAACATTGA+TGG | + | chr1_4:53524103-53524122 | None:intergenic | 25.0% |
| ! | TATTATAACGAGATACATAC+AGG | + | chr1_4:53524345-53524364 | None:intergenic | 25.0% |
| !! | AATACTTTTGTTCAACAATG+TGG | - | chr1_4:53524471-53524490 | Msa0169980:intron | 25.0% |
| ! | TATAAGGAAATAGTTACTTG+TGG | + | chr1_4:53524509-53524528 | None:intergenic | 25.0% |
| !!! | TAAATCACATCTTTGGAATT+TGG | + | chr1_4:53524553-53524572 | None:intergenic | 25.0% |
| ! | GGAAGTCATATTATTTACAT+CGG | - | chr1_4:53524665-53524684 | Msa0169980:CDS | 25.0% |
| ! | TTAGTCAATCAAAGTAACAA+TGG | + | chr1_4:53524740-53524759 | None:intergenic | 25.0% |
| ! | TTGAAACTTGAAGTAGAATA+TGG | + | chr1_4:53524771-53524790 | None:intergenic | 25.0% |
| !!! | TCGAGTGTATTTTTAAACAA+AGG | - | chr1_4:53524931-53524950 | Msa0169980:intron | 25.0% |
| ! | AAGTATATTATACTTGCAAC+TGG | + | chr1_4:53525776-53525795 | None:intergenic | 25.0% |
| ! | AGTTGCAAGTATAATATACT+TGG | - | chr1_4:53525775-53525794 | Msa0169980:intron | 25.0% |
| !! | ATTTTCATTCCATGTTACAA+AGG | - | chr1_4:53526216-53526235 | Msa0169980:intron | 25.0% |
| !! | TTGTTGATTGCAAAAACAAT+TGG | + | chr1_4:53526293-53526312 | None:intergenic | 25.0% |
| ! | TTACATAAGATACTACTGAA+GGG | + | chr1_4:53526626-53526645 | None:intergenic | 25.0% |
| ! | ATTACATAAGATACTACTGA+AGG | + | chr1_4:53526627-53526646 | None:intergenic | 25.0% |
| !!! | CCTCTAAAAATGTTCTTTTT+AGG | + | chr1_4:53526793-53526812 | None:intergenic | 25.0% |
| !!! | CCTAAAAAGAACATTTTTAG+AGG | - | chr1_4:53526790-53526809 | Msa0169980:CDS | 25.0% |
| ! | AACCTATGTATATAACCATA+AGG | - | chr1_4:53526824-53526843 | Msa0169980:exon | 25.0% |
| ! | ATCCTTATGGTTATATACAT+AGG | + | chr1_4:53526829-53526848 | None:intergenic | 25.0% |
| ! | AGGATATATTAACATCCTTA+TGG | + | chr1_4:53526842-53526861 | None:intergenic | 25.0% |
| ! | TGTTAATATATCCTTGTAGT+TGG | - | chr1_4:53526848-53526867 | Msa0169980:five_prime_UTR | 25.0% |
| ! | CAATCAACTTATCATTGACT+CGG | - | chr1_4:53523865-53523884 | Msa0169980:three_prime_UTR | 30.0% |
| ! | TATATAGCTTTACCTTTGCT+TGG | - | chr1_4:53523958-53523977 | Msa0169980:CDS | 30.0% |
| ! | GAAAATATGATGGAGTTGTT+GGG | - | chr1_4:53524058-53524077 | Msa0169980:intron | 30.0% |
| ! | AAAATATGATGGAGTTGTTG+GGG | - | chr1_4:53524059-53524078 | Msa0169980:intron | 30.0% |
| !!! | AAGCCATCAATGTTTTGAAA+AGG | - | chr1_4:53524097-53524116 | Msa0169980:intron | 30.0% |
| !!! | CAGGTTTTTTCATTTTCACT+TGG | + | chr1_4:53524326-53524345 | None:intergenic | 30.0% |
| GTATTGCATCGTTCATAAAA+TGG | + | chr1_4:53524440-53524459 | None:intergenic | 30.0% | |
| ATCTGTGTAAATCACATCTT+TGG | + | chr1_4:53524560-53524579 | None:intergenic | 30.0% | |
| AGATCAATCATTATCCACTT+AGG | - | chr1_4:53524576-53524595 | Msa0169980:CDS | 30.0% | |
| TTTCAAACCTAAAAGATCGT+TGG | - | chr1_4:53524644-53524663 | Msa0169980:CDS | 30.0% | |
| TAGAATTGCACATAGAACAA+GGG | - | chr1_4:53524971-53524990 | Msa0169980:CDS | 30.0% | |
| TTAAACATTGTAAGAATGCC+AGG | + | chr1_4:53525664-53525683 | None:intergenic | 30.0% | |
| GAAATATTAGTCAGTAGAGA+GGG | + | chr1_4:53525754-53525773 | None:intergenic | 30.0% | |
| ATTAGAATAACTAAAACCCG+AGG | - | chr1_4:53525910-53525929 | Msa0169980:CDS | 30.0% | |
| TGAGTTTCATATCATCAATC+AGG | - | chr1_4:53525945-53525964 | Msa0169980:intron | 30.0% | |
| CATAAACAAAGAGTCATGAT+AGG | + | chr1_4:53526064-53526083 | None:intergenic | 30.0% | |
| ! | CTATCATGACTCTTTGTTTA+TGG | - | chr1_4:53526062-53526081 | Msa0169980:intron | 30.0% |
| ATGTACGTTATGTAATTGCA+GGG | - | chr1_4:53526176-53526195 | Msa0169980:intron | 30.0% | |
| CAGTAAATACCTTTGTAACA+TGG | + | chr1_4:53526228-53526247 | None:intergenic | 30.0% | |
| GTTGAATGTAATAACATGTG+CGG | + | chr1_4:53526352-53526371 | None:intergenic | 30.0% | |
| AGTGTTAGATAGAGTTGAAT+AGG | - | chr1_4:53526431-53526450 | Msa0169980:intron | 30.0% | |
| TTTATACTAGCAAACTCTTC+AGG | + | chr1_4:53526553-53526572 | None:intergenic | 30.0% | |
| ! | GTCAAATGGTGTAAAAGTAT+TGG | - | chr1_4:53526579-53526598 | Msa0169980:CDS | 30.0% |
| ! | GGCACATTTTTCACATTTTA+TGG | + | chr1_4:53526772-53526791 | None:intergenic | 30.0% |
| !!! | TACTCTTGTTTTGCATCTGT+AGG | - | chr1_4:53523725-53523744 | Msa0169980:three_prime_UTR | 35.0% |
| AAAAATCTCATGGGAATTGC+TGG | - | chr1_4:53523754-53523773 | Msa0169980:three_prime_UTR | 35.0% | |
| !! | GATGCTGTTGGTAACATATT+TGG | - | chr1_4:53523793-53523812 | Msa0169980:three_prime_UTR | 35.0% |
| ! | TTGGTAACATATTTGGTCGT+TGG | - | chr1_4:53523800-53523819 | Msa0169980:three_prime_UTR | 35.0% |
| !! | CGAGTCAATGATAAGTTGAT+TGG | + | chr1_4:53523867-53523886 | None:intergenic | 35.0% |
| AATCTTCCCTCTATTAGCTA+CGG | - | chr1_4:53523912-53523931 | Msa0169980:three_prime_UTR | 35.0% | |
| TACCTTTGCTTGGTTTATGT+AGG | - | chr1_4:53523968-53523987 | Msa0169980:CDS | 35.0% | |
| ACCTTTGCTTGGTTTATGTA+GGG | - | chr1_4:53523969-53523988 | Msa0169980:CDS | 35.0% | |
| ! | GGAAAATATGATGGAGTTGT+TGG | - | chr1_4:53524057-53524076 | Msa0169980:intron | 35.0% |
| CAGCATCTTGAATCTTACTA+CGG | - | chr1_4:53524226-53524245 | Msa0169980:intron | 35.0% | |
| CTCGCTGCAAATTATTTCAA+AGG | - | chr1_4:53524269-53524288 | Msa0169980:intron | 35.0% | |
| ! | ATGACTTCCAACGATCTTTT+AGG | + | chr1_4:53524654-53524673 | None:intergenic | 35.0% |
| TTGGAATAAGTTGCTTAGGA+AGG | - | chr1_4:53524703-53524722 | Msa0169980:CDS | 35.0% | |
| ! | CATCTAAGAAGGATACGTTT+TGG | + | chr1_4:53524870-53524889 | None:intergenic | 35.0% |
| GTAGAATTGCACATAGAACA+AGG | - | chr1_4:53524970-53524989 | Msa0169980:CDS | 35.0% | |
| AGTCTAAGGGTTGAATTTGA+AGG | - | chr1_4:53525135-53525154 | Msa0169980:CDS | 35.0% | |
| GCTCTTGATTAATCAAATCG+AGG | + | chr1_4:53525520-53525539 | None:intergenic | 35.0% | |
| !! | TTTCTATGTGCGATTTGCTA+GGG | + | chr1_4:53525608-53525627 | None:intergenic | 35.0% |
| ! | ATTTCTATGTGCGATTTGCT+AGG | + | chr1_4:53525609-53525628 | None:intergenic | 35.0% |
| AGCAAATCGCACATAGAAAT+TGG | - | chr1_4:53525609-53525628 | Msa0169980:CDS | 35.0% | |
| GGAAATATTAGTCAGTAGAG+AGG | + | chr1_4:53525755-53525774 | None:intergenic | 35.0% | |
| AGATACTAGAGACATTGATG+AGG | - | chr1_4:53525846-53525865 | Msa0169980:intron | 35.0% | |
| TAGCAGGAAATATTACACAG+TGG | - | chr1_4:53526124-53526143 | Msa0169980:intron | 35.0% | |
| CATGTACGTTATGTAATTGC+AGG | - | chr1_4:53526175-53526194 | Msa0169980:intron | 35.0% | |
| ATACTACTGAAGGGACAATT+TGG | + | chr1_4:53526617-53526636 | None:intergenic | 35.0% | |
| TTGACTATCATTGCAGAACA+AGG | - | chr1_4:53526655-53526674 | Msa0169980:intron | 35.0% | |
| ! | TATACCCTTTTTGTCTAACG+TGG | - | chr1_4:53526733-53526752 | Msa0169980:intron | 35.0% |
| ATTCCTCAAAAGCTCTCTCT+GGG | - | chr1_4:53523832-53523851 | Msa0169980:three_prime_UTR | 40.0% | |
| GCTAAACCGTAGCTAATAGA+GGG | + | chr1_4:53523921-53523940 | None:intergenic | 40.0% | |
| CTCTATTAGCTACGGTTTAG+CGG | - | chr1_4:53523920-53523939 | Msa0169980:three_prime_UTR | 40.0% | |
| TCCCTACATAAACCAAGCAA+AGG | + | chr1_4:53523973-53523992 | None:intergenic | 40.0% | |
| TTGCTTGGTTTATGTAGGGA+TGG | - | chr1_4:53523973-53523992 | Msa0169980:CDS | 40.0% | |
| !! | GTAAGGTATAGCATCGATGT+GGG | + | chr1_4:53524034-53524053 | None:intergenic | 40.0% |
| !! | AGTAAGGTATAGCATCGATG+TGG | + | chr1_4:53524035-53524054 | None:intergenic | 40.0% |
| CATCGATGCTATACCTTACT+CGG | - | chr1_4:53524035-53524054 | Msa0169980:intron | 40.0% | |
| ATCGATGCTATACCTTACTC+GGG | - | chr1_4:53524036-53524055 | Msa0169980:intron | 40.0% | |
| ! | CCATCATATTTTCCCGAGTA+AGG | + | chr1_4:53524051-53524070 | None:intergenic | 40.0% |
| CCTTACTCGGGAAAATATGA+TGG | - | chr1_4:53524048-53524067 | Msa0169980:intron | 40.0% | |
| CAACTTATTCCAAAGCGTGT+GGG | + | chr1_4:53524696-53524715 | None:intergenic | 40.0% | |
| !! | CGCTTTGGAATAAGTTGCTT+AGG | - | chr1_4:53524699-53524718 | Msa0169980:CDS | 40.0% |
| TATCCTTCTTAGATGCTGCA+AGG | - | chr1_4:53524875-53524894 | Msa0169980:intron | 40.0% | |
| CTCGACTCAGGTATATCTAT+AGG | - | chr1_4:53525084-53525103 | Msa0169980:intron | 40.0% | |
| AATTCAACCCTTAGACTTGC+AGG | + | chr1_4:53525132-53525151 | None:intergenic | 40.0% | |
| AGGGTTGAATTTGAAGGCAA+TGG | - | chr1_4:53525141-53525160 | Msa0169980:CDS | 40.0% | |
| GTTGAATTTGAAGGCAATGG+TGG | - | chr1_4:53525144-53525163 | Msa0169980:CDS | 40.0% | |
| AGAAACACGTCTTGGAATCT+GGG | - | chr1_4:53525450-53525469 | Msa0169980:CDS | 40.0% | |
| TAACTTACCAACAGTGCCAA+CGG | + | chr1_4:53525486-53525505 | None:intergenic | 40.0% | |
| ACGACAATTTGAGTCATACC+TGG | - | chr1_4:53525643-53525662 | Msa0169980:CDS | 40.0% | |
| TATCATCAATCAGGATCCAC+CGG | - | chr1_4:53525954-53525973 | Msa0169980:intron | 40.0% | |
| ! | ATGACTCTTTGTTTATGGCC+AGG | - | chr1_4:53526067-53526086 | Msa0169980:intron | 40.0% |
| CTTATCTTCCTGCAAATACC+TGG | + | chr1_4:53526088-53526107 | None:intergenic | 40.0% | |
| GGAATGAAAATCATGCCCAT+TGG | + | chr1_4:53526207-53526226 | None:intergenic | 40.0% | |
| CAACTCTATCTAACACTGAC+AGG | + | chr1_4:53526428-53526447 | None:intergenic | 40.0% | |
| TAGCAAACTCTTCAGGCTTA+TGG | + | chr1_4:53526546-53526565 | None:intergenic | 40.0% | |
| ! | TGCTGGTCTATCTGTAAGAG+AGG | - | chr1_4:53523771-53523790 | Msa0169980:three_prime_UTR | 45.0% |
| TCTGTAAGAGAGGATGCTGT+TGG | - | chr1_4:53523781-53523800 | Msa0169980:three_prime_UTR | 45.0% | |
| CATTCCTCAAAAGCTCTCTC+TGG | - | chr1_4:53523831-53523850 | Msa0169980:three_prime_UTR | 45.0% | |
| CGCTAAACCGTAGCTAATAG+AGG | + | chr1_4:53523922-53523941 | None:intergenic | 45.0% | |
| ! | GATGGAGTTGTTGGGGTTTT+AGG | - | chr1_4:53524066-53524085 | Msa0169980:intron | 45.0% |
| GAGACTATCAGAACGGTGAA+AGG | + | chr1_4:53524252-53524271 | None:intergenic | 45.0% | |
| TTGCAGCGAGACTATCAGAA+CGG | + | chr1_4:53524259-53524278 | None:intergenic | 45.0% | |
| AACGTTGCTACTCACCTAAG+TGG | + | chr1_4:53524593-53524612 | None:intergenic | 45.0% | |
| CTGTGAAGGCTTAGTCAGTA+TGG | + | chr1_4:53524618-53524637 | None:intergenic | 45.0% | |
| ! | CATACTGACTAAGCCTTCAC+AGG | - | chr1_4:53524616-53524635 | Msa0169980:CDS | 45.0% |
| ! | GTTTGAAACCAGACCTGTGA+AGG | + | chr1_4:53524632-53524651 | None:intergenic | 45.0% |
| GCAACTTATTCCAAAGCGTG+TGG | + | chr1_4:53524697-53524716 | None:intergenic | 45.0% | |
| AGACCTTGCAGCATCTAAGA+AGG | + | chr1_4:53524881-53524900 | None:intergenic | 45.0% | |
| CATAGAACAAGGGCCTATTC+TGG | - | chr1_4:53524981-53525000 | Msa0169980:CDS | 45.0% | |
| ! | CGTCATTTGTTTCTCGACTC+AGG | - | chr1_4:53525072-53525091 | Msa0169980:intron | 45.0% |
| AAAGATAGCAGCCACCTGTT+AGG | + | chr1_4:53525192-53525211 | None:intergenic | 45.0% | |
| ACATGGAGCAGAAATGATGC+TGG | - | chr1_4:53525395-53525414 | Msa0169980:CDS | 45.0% | |
| GAGAAACACGTCTTGGAATC+TGG | - | chr1_4:53525449-53525468 | Msa0169980:CDS | 45.0% | |
| GACGACTGCTTCATCAGATA+GGG | + | chr1_4:53525980-53525999 | None:intergenic | 45.0% | |
| TGACGACTGCTTCATCAGAT+AGG | + | chr1_4:53525981-53526000 | None:intergenic | 45.0% | |
| GTTTATGGCCAGGTATTTGC+AGG | - | chr1_4:53526077-53526096 | Msa0169980:intron | 45.0% | |
| ! | TAATTGCAGGGTGTCTCCAA+TGG | - | chr1_4:53526188-53526207 | Msa0169980:intron | 45.0% |
| ! | AATTGCAGGGTGTCTCCAAT+GGG | - | chr1_4:53526189-53526208 | Msa0169980:intron | 45.0% |
| ! | TGTGCGGTTTTTGTCTGTGT+CGG | + | chr1_4:53526336-53526355 | None:intergenic | 45.0% |
| CTGAAGGGACAATTTGGCTA+AGG | + | chr1_4:53526611-53526630 | None:intergenic | 45.0% | |
| ! | ACCCTTTTTGTCTAACGTGG+AGG | - | chr1_4:53526736-53526755 | Msa0169980:intron | 45.0% |
| CCCTCCACGTTAGACAAAAA+GGG | + | chr1_4:53526740-53526759 | None:intergenic | 45.0% | |
| ! | CCCTTTTTGTCTAACGTGGA+GGG | - | chr1_4:53526737-53526756 | Msa0169980:intron | 45.0% |
| ACCCTCCACGTTAGACAAAA+AGG | + | chr1_4:53526741-53526760 | None:intergenic | 45.0% | |
| ! | GATCCCAGAGAGAGCTTTTG+AGG | + | chr1_4:53523838-53523857 | None:intergenic | 50.0% |
| TGACTAAGCCTTCACAGGTC+TGG | - | chr1_4:53524621-53524640 | Msa0169980:CDS | 50.0% | |
| TGCTTTGTGCAGCCGCTTAT+TGG | - | chr1_4:53524798-53524817 | Msa0169980:intron | 50.0% | |
| TCTCACTCCCAGCCAATAAG+CGG | + | chr1_4:53524813-53524832 | None:intergenic | 50.0% | |
| TTAGATGCTGCAAGGTCTGC+TGG | - | chr1_4:53524883-53524902 | Msa0169980:intron | 50.0% | |
| AGAACAAGGGCCTATTCTGG+AGG | - | chr1_4:53524984-53525003 | Msa0169980:CDS | 50.0% | |
| GTACCTTCGTCCTCCAGAAT+AGG | + | chr1_4:53524997-53525016 | None:intergenic | 50.0% | |
| TAGACTTGCAGGAGCTGCAA+TGG | + | chr1_4:53525121-53525140 | None:intergenic | 50.0% | |
| TTGCAGCTCCTGCAAGTCTA+AGG | - | chr1_4:53525121-53525140 | Msa0169980:CDS | 50.0% | |
| TGCAGCTCCTGCAAGTCTAA+GGG | - | chr1_4:53525122-53525141 | Msa0169980:CDS | 50.0% | |
| CCACCTGTTAGGCATAAGGA+CGG | + | chr1_4:53525181-53525200 | None:intergenic | 50.0% | |
| GAGCAGAAATGATGCTGGTC+TGG | - | chr1_4:53525400-53525419 | Msa0169980:CDS | 50.0% | |
| AACTGCCAGGGCTAATTCAG+CGG | + | chr1_4:53525429-53525448 | None:intergenic | 50.0% | |
| GACGTGTTTCTCAACTGCCA+GGG | + | chr1_4:53525441-53525460 | None:intergenic | 50.0% | |
| AGACGTGTTTCTCAACTGCC+AGG | + | chr1_4:53525442-53525461 | None:intergenic | 50.0% | |
| GGCAGTTGAGAAACACGTCT+TGG | - | chr1_4:53525442-53525461 | Msa0169980:CDS | 50.0% | |
| TCTGGGTCTGTTGATACCGT+TGG | - | chr1_4:53525467-53525486 | Msa0169980:CDS | 50.0% | |
| GTTGATACCGTTGGCACTGT+TGG | - | chr1_4:53525476-53525495 | Msa0169980:intron | 50.0% | |
| ! | GGGATGCTATTGATTGCTCC+AGG | + | chr1_4:53525588-53525607 | None:intergenic | 50.0% |
| ACTCAGTGAGCTTGACACCT+CGG | + | chr1_4:53525930-53525949 | None:intergenic | 50.0% | |
| ACTGCTTCATCAGATAGGGC+CGG | + | chr1_4:53525976-53525995 | None:intergenic | 50.0% | |
| TGAAGCAGTCGTCAACGCAA+TGG | - | chr1_4:53525987-53526006 | Msa0169980:intron | 50.0% | |
| CGTTGCCACATGTCTGCTAT+TGG | - | chr1_4:53526400-53526419 | Msa0169980:intron | 50.0% | |
| AGGCACCAATAGCAGACATG+TGG | + | chr1_4:53526408-53526427 | None:intergenic | 50.0% | |
| TGTAGGGATGGCAGTGAACC+CGG | - | chr1_4:53523985-53524004 | Msa0169980:CDS | 55.0% | |
| TGTTGCAACTGCAGCAAGCC+CGG | + | chr1_4:53524007-53524026 | None:intergenic | 55.0% | |
| TCGGAAGAACCCACACGCTT+TGG | - | chr1_4:53524684-53524703 | Msa0169980:CDS | 55.0% | |
| TTGTGCAGCCGCTTATTGGC+TGG | - | chr1_4:53524802-53524821 | Msa0169980:intron | 55.0% | |
| ! | TGTGCAGCCGCTTATTGGCT+GGG | - | chr1_4:53524803-53524822 | Msa0169980:intron | 55.0% |
| GTGCCGTCCTTATGCCTAAC+AGG | - | chr1_4:53525175-53525194 | Msa0169980:intron | 55.0% | |
| CCGTCCTTATGCCTAACAGG+TGG | - | chr1_4:53525178-53525197 | Msa0169980:intron | 55.0% | |
| GCAGCCACCTGTTAGGCATA+AGG | + | chr1_4:53525185-53525204 | None:intergenic | 55.0% | |
| GGTATCCTGCAACTGCATCC+TGG | - | chr1_4:53525567-53525586 | Msa0169980:intron | 55.0% | |
| TTGCTCCAGGATGCAGTTGC+AGG | + | chr1_4:53525575-53525594 | None:intergenic | 55.0% | |
| CTCAGTGAGCTTGACACCTC+GGG | + | chr1_4:53525929-53525948 | None:intergenic | 55.0% | |
| !! | CTTGTCGTCGTCGTTTTCGC+AGG | - | chr1_4:53526514-53526533 | Msa0169980:CDS | 55.0% |
| GTAGGGATGGCAGTGAACCC+GGG | - | chr1_4:53523986-53524005 | Msa0169980:CDS | 60.0% | |
| GTTGCAACTGCAGCAAGCCC+GGG | + | chr1_4:53524006-53524025 | None:intergenic | 60.0% | |
| !! | GGGCTTGCTGCAGTTGCAAC+AGG | - | chr1_4:53524006-53524025 | Msa0169980:CDS | 60.0% |
| ! | GGGCCTATTCTGGAGGACGA+AGG | - | chr1_4:53524991-53525010 | Msa0169980:CDS | 60.0% |
| GAAGGCAATGGTGGCCATGC+AGG | - | chr1_4:53525153-53525172 | Msa0169980:CDS | 60.0% | |
| GCATAAGGACGGCACCTGCA+TGG | + | chr1_4:53525170-53525189 | None:intergenic | 60.0% | |
| GCTTCATCAGATAGGGCCGG+TGG | + | chr1_4:53525973-53525992 | None:intergenic | 60.0% | |
| GGCAGCCGCTGAATTAGCCC+TGG | - | chr1_4:53525421-53525440 | Msa0169980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53523714 | 53526874 | 53523714 | ID=Msa0169980;Name=Msa0169980 |
| chr1_4 | mRNA | 53523714 | 53526874 | 53523714 | ID=Msa0169980-mRNA-1;Parent=Msa0169980;Name=Msa0169980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=49|1|1|1|0.55|0.8|10|241|371 |
| chr1_4 | exon | 53523714 | 53524052 | 53523714 | ID=Msa0169980-mRNA-1:exon:15934;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53524351 | 53524391 | 53524351 | ID=Msa0169980-mRNA-1:exon:15933;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53524500 | 53524740 | 53524500 | ID=Msa0169980-mRNA-1:exon:15932;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53524958 | 53525020 | 53524958 | ID=Msa0169980-mRNA-1:exon:15931;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53525091 | 53525182 | 53525091 | ID=Msa0169980-mRNA-1:exon:15930;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53525392 | 53525494 | 53525392 | ID=Msa0169980-mRNA-1:exon:15929;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53525576 | 53525778 | 53525576 | ID=Msa0169980-mRNA-1:exon:15928;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53525864 | 53525950 | 53525864 | ID=Msa0169980-mRNA-1:exon:15927;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53526470 | 53526598 | 53526470 | ID=Msa0169980-mRNA-1:exon:15926;Parent=Msa0169980-mRNA-1 |
| chr1_4 | exon | 53526767 | 53526874 | 53526767 | ID=Msa0169980-mRNA-1:exon:15925;Parent=Msa0169980-mRNA-1 |
| chr1_4 | five_prime_UTR | 53526826 | 53526874 | 53526826 | ID=Msa0169980-mRNA-1:five_prime_utr;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53526767 | 53526825 | 53526767 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53526470 | 53526598 | 53526470 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53525864 | 53525950 | 53525864 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53525576 | 53525778 | 53525576 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53525392 | 53525494 | 53525392 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53525091 | 53525182 | 53525091 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53524958 | 53525020 | 53524958 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53524500 | 53524740 | 53524500 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53524351 | 53524391 | 53524351 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | CDS | 53523955 | 53524052 | 53523955 | ID=Msa0169980-mRNA-1:cds;Parent=Msa0169980-mRNA-1 |
| chr1_4 | three_prime_UTR | 53523714 | 53523954 | 53523714 | ID=Msa0169980-mRNA-1:three_prime_utr;Parent=Msa0169980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
