Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529020 | XP_003590793.2 | 96.218 | 476 | 11 | 1 | 1 | 476 | 1 | 469 | 0.0 | 931 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529020 | sp|Q8VXY9|UAH_ARATH | 79.295 | 454 | 82 | 4 | 30 | 475 | 26 | 475 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529020 | G7I3Z0 | 96.218 | 476 | 11 | 1 | 1 | 476 | 1 | 469 | 0.0 | 931 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038910 | Msa0529020 | 0.800424 | 1.451004e-48 | -8.615850e-47 |
| Msa0169980 | Msa0529020 | 0.811313 | 7.451616e-51 | -8.615850e-47 |
| Msa0529020 | Msa0705710 | 0.817080 | 3.968977e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529020 | MtrunA17_Chr1g0187131 | 96.218 | 476 | 11 | 1 | 1 | 476 | 1 | 469 | 0.0 | 931 |
| Msa0529020 | MtrunA17_Chr2g0296941 | 31.517 | 422 | 259 | 8 | 74 | 468 | 56 | 474 | 1.27e-48 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0529020 | AT5G43600.1 | 79.295 | 454 | 82 | 4 | 30 | 475 | 26 | 475 | 0.0 | 706 |
| Msa0529020 | AT4G20070.1 | 31.529 | 425 | 261 | 7 | 71 | 468 | 99 | 520 | 2.11e-51 | 182 |
| Msa0529020 | AT4G20070.2 | 34.014 | 294 | 172 | 4 | 71 | 345 | 99 | 389 | 6.16e-37 | 141 |
Find 118 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCATGACTCTTTGTTTA+TGG | 0.075402 | 4_1:+2013203 | Msa0529020:CDS |
| TGCTTTGTGCAGCCGCTTAT+TGG | 0.159998 | 4_1:+2011939 | Msa0529020:intron |
| ACCCTCCACGTTAGACAAAA+AGG | 0.215814 | 4_1:-2013880 | None:intergenic |
| GATGCTGTTGGTAACATATT+TGG | 0.239325 | 4_1:+2010956 | Msa0529020:CDS |
| GAGAAACACGTCTTGGAATC+TGG | 0.290253 | 4_1:+2012590 | Msa0529020:CDS |
| TTGCAGCTCCTGCAAGTCTA+AGG | 0.299708 | 4_1:+2012262 | Msa0529020:CDS |
| AATTCAACCCTTAGACTTGC+AGG | 0.301726 | 4_1:-2012270 | None:intergenic |
| AGCAAATCGCACATAGAAAT+TGG | 0.316482 | 4_1:+2012750 | Msa0529020:CDS |
| ATACTACTGAAGGGACAATT+TGG | 0.336534 | 4_1:-2013756 | None:intergenic |
| TTTATACTAGCAAACTCTTC+AGG | 0.337867 | 4_1:-2013692 | None:intergenic |
| TTGTGCAGCCGCTTATTGGC+TGG | 0.339371 | 4_1:+2011943 | Msa0529020:intron |
| CATAGAACAAGGGCCTATTC+TGG | 0.341073 | 4_1:+2012122 | Msa0529020:CDS |
| TAGCAAACTCTTCAGGCTTA+TGG | 0.358386 | 4_1:-2013685 | None:intergenic |
| TTGCTCCAGGATGCAGTTGC+AGG | 0.363852 | 4_1:-2012713 | None:intergenic |
| AGGATATATTAACACCCTTA+TGG | 0.366138 | 4_1:-2013981 | None:intergenic |
| CATCGATGCTATACCTTACT+CGG | 0.392312 | 4_1:+2011198 | Msa0529020:CDS |
| GGGCTTGCTGCAGTTGCAAC+AGG | 0.394043 | 4_1:+2011169 | Msa0529020:CDS |
| TTAGATGCTGCAAGGTCTGC+TGG | 0.401111 | 4_1:+2012024 | Msa0529020:CDS |
| TGACGACTGCTTCATCAGAT+AGG | 0.406360 | 4_1:-2013119 | None:intergenic |
| TGTTGCAACTGCAGCAAGCC+CGG | 0.407600 | 4_1:-2011167 | None:intergenic |
| GGAAAATATGATGGAGTTGT+TGG | 0.411369 | 4_1:+2011220 | Msa0529020:CDS |
| TTGCAGAGTCTGAGCATCAT+AGG | 0.413088 | 4_1:-2010131 | None:intergenic |
| GTGCCGTCCTTATGCCTAAC+AGG | 0.420469 | 4_1:+2012316 | Msa0529020:CDS |
| TCGGAAGAACCCACACGCTT+TGG | 0.420823 | 4_1:+2011825 | Msa0529020:CDS |
| CATCTAAGAAGGATACGTTT+TGG | 0.421925 | 4_1:-2012008 | None:intergenic |
| CGCTTTGGAATAAGTTGCTT+AGG | 0.436892 | 4_1:+2011840 | Msa0529020:CDS |
| AAAGATAGCAGCCACCTGTT+AGG | 0.437842 | 4_1:-2012330 | None:intergenic |
| TGTGCAGCCGCTTATTGGCT+GGG | 0.439185 | 4_1:+2011944 | Msa0529020:intron |
| TGAGTTTCATATCATCAATC+AGG | 0.445316 | 4_1:+2013086 | Msa0529020:CDS |
| AATCTATGTATATAACCATA+AGG | 0.449707 | 4_1:+2013966 | Msa0529020:three_prime_UTR |
| AAGCCATCAATGTCTTGAAA+AGG | 0.452788 | 4_1:+2011260 | Msa0529020:CDS |
| ATTTCTATGTGCGATTTGCT+AGG | 0.453162 | 4_1:-2012747 | None:intergenic |
| CTCAGTGAGCTTGACACCTC+GGG | 0.455549 | 4_1:-2013067 | None:intergenic |
| GGGTTCAAGAATTGAGTAAC+CGG | 0.464660 | 4_1:-2010089 | None:intergenic |
| AGAAACACGTCTTGGAATCT+GGG | 0.466268 | 4_1:+2012591 | Msa0529020:CDS |
| GTCAAATGGTGTAAAAGTAT+TGG | 0.471269 | 4_1:+2013721 | Msa0529020:CDS |
| ATGACTCTTTGTTTATGGCC+AGG | 0.475673 | 4_1:+2013208 | Msa0529020:CDS |
| ATCTATGTATATAACCATAA+GGG | 0.476258 | 4_1:+2013967 | Msa0529020:three_prime_UTR |
| TGTTAATATATCCTTGTAGT+TGG | 0.476576 | 4_1:+2013990 | Msa0529020:three_prime_UTR |
| TGTAGGGATGGCAGTGAACC+CGG | 0.479777 | 4_1:+2011148 | Msa0529020:intron |
| AGACGTGTTTCTCAACTGCC+AGG | 0.483332 | 4_1:-2012580 | None:intergenic |
| TCCATGGTTGAGATGATTGA+AGG | 0.484068 | 4_1:-2010058 | None:intergenic |
| GAGCAGAAATGATGCTGGTC+TGG | 0.485198 | 4_1:+2012541 | Msa0529020:intron |
| AGTATAAAAGATATGTCAAA+TGG | 0.486176 | 4_1:+2013707 | Msa0529020:CDS |
| CTCGACTCAGGTATATCTAT+AGG | 0.486261 | 4_1:+2012225 | Msa0529020:intron |
| GTACCTTCGTCCTCCAGAAT+AGG | 0.486813 | 4_1:-2012135 | None:intergenic |
| GGTATCCTGCAACTGCATCC+TGG | 0.493387 | 4_1:+2012708 | Msa0529020:intron |
| CACCTGCTCCATCAGTAACC+AGG | 0.493616 | 4_1:+2010272 | Msa0529020:CDS |
| AGTCTAAGGGTTGAATTTGA+AGG | 0.495118 | 4_1:+2012276 | Msa0529020:CDS |
| TTGGTAACATATTTGGTCGT+TGG | 0.498780 | 4_1:+2010963 | Msa0529020:CDS |
| CATAAACAAAGAGTCATGAT+AGG | 0.503371 | 4_1:-2013202 | None:intergenic |
| TTTCTATGTGCGATTTGCTA+GGG | 0.507359 | 4_1:-2012746 | None:intergenic |
| CCTTACTCGGGAAAATATGA+TGG | 0.509108 | 4_1:+2011211 | Msa0529020:CDS |
| GGCAGCCGCTGAATTAGCCC+TGG | 0.510323 | 4_1:+2012562 | Msa0529020:CDS |
| GTTGCAACTGCAGCAAGCCC+GGG | 0.512122 | 4_1:-2011166 | None:intergenic |
| TAATTGCAGGGTGTCTCCAA+TGG | 0.515169 | 4_1:+2013329 | Msa0529020:intron |
| TTTCAAACCTAAAAGATCGT+TGG | 0.519496 | 4_1:+2011785 | Msa0529020:CDS |
| GCAGCCACCTGTTAGGCATA+AGG | 0.521384 | 4_1:-2012323 | None:intergenic |
| AGACCTTGCAGCATCTAAGA+AGG | 0.530450 | 4_1:-2012019 | None:intergenic |
| GAAGGCAATGGTGGCCATGC+AGG | 0.531611 | 4_1:+2012294 | Msa0529020:CDS |
| GGGATGCTATTGATTGCTCC+AGG | 0.535136 | 4_1:-2012726 | None:intergenic |
| CAGTAAATACCTTTGTAACA+TGG | 0.542692 | 4_1:-2013366 | None:intergenic |
| AGGGTTGAATTTGAAGGCAA+TGG | 0.544238 | 4_1:+2012282 | Msa0529020:CDS |
| AATTGCAGGGTGTCTCCAAT+GGG | 0.545945 | 4_1:+2013330 | Msa0529020:intron |
| GGCAGTTGAGAAACACGTCT+TGG | 0.547610 | 4_1:+2012583 | Msa0529020:CDS |
| GTTGATACCGTTGGCACTGT+TGG | 0.548107 | 4_1:+2012617 | Msa0529020:CDS |
| GACGACTGCTTCATCAGATA+GGG | 0.552858 | 4_1:-2013118 | None:intergenic |
| GATAGTGAAGAGAATGAAGT+GGG | 0.554819 | 4_1:-2010109 | None:intergenic |
| TTGGAATAAGTTGCTTAGGA+AGG | 0.556520 | 4_1:+2011844 | Msa0529020:CDS |
| TAGACTTGCAGGAGCTGCAA+TGG | 0.558242 | 4_1:-2012259 | None:intergenic |
| ACTCAGTGAGCTTGACACCT+CGG | 0.561616 | 4_1:-2013068 | None:intergenic |
| GTAACCGGAAAATTGTTCCA+TGG | 0.564773 | 4_1:-2010074 | None:intergenic |
| TGCAGCTCCTGCAAGTCTAA+GGG | 0.569479 | 4_1:+2012263 | Msa0529020:CDS |
| TGCTGGTCTATCTGTAAGAG+AGG | 0.570001 | 4_1:+2010934 | Msa0529020:CDS |
| GCAACTTATTCCAAAGCGTG+TGG | 0.571770 | 4_1:-2011835 | None:intergenic |
| TGCTCAGACTCTGCAAAACC+AGG | 0.574111 | 4_1:+2010138 | Msa0529020:CDS |
| TCTGGGTCTGTTGATACCGT+TGG | 0.574941 | 4_1:+2012608 | Msa0529020:CDS |
| GTAGAATTGCACATAGAACA+AGG | 0.577230 | 4_1:+2012111 | Msa0529020:CDS |
| TCTGTAAGAGAGGATGCTGT+TGG | 0.578585 | 4_1:+2010944 | Msa0529020:CDS |
| TACAAAACCCTGGTTACTGA+TGG | 0.580980 | 4_1:-2010280 | None:intergenic |
| ATGTTGATGAGATGAAATTG+AGG | 0.581724 | 4_1:-2010017 | None:intergenic |
| GGAAGTCATATTATTTACAT+CGG | 0.582332 | 4_1:+2011806 | Msa0529020:CDS |
| CTGAAGGGACAATTTGGCTA+AGG | 0.584714 | 4_1:-2013750 | None:intergenic |
| GGATAGTGAAGAGAATGAAG+TGG | 0.584744 | 4_1:-2010110 | None:intergenic |
| GGAATGAAAATCATGCCCAT+TGG | 0.585366 | 4_1:-2013345 | None:intergenic |
| TATCATCAATCAGGATCCAC+CGG | 0.585926 | 4_1:+2013095 | Msa0529020:CDS |
| GTTGAATTTGAAGGCAATGG+TGG | 0.588343 | 4_1:+2012285 | Msa0529020:CDS |
| GTAGGGATGGCAGTGAACCC+GGG | 0.597353 | 4_1:+2011149 | Msa0529020:intron |
| GCATAAGGACGGCACCTGCA+TGG | 0.597367 | 4_1:-2012308 | None:intergenic |
| TGAAGCAGTCGTCAACGCAA+TGG | 0.598702 | 4_1:+2013128 | Msa0529020:CDS |
| ACATGGAGCAGAAATGATGC+TGG | 0.599655 | 4_1:+2012536 | Msa0529020:intron |
| ATTATATAAGATACTACTGA+AGG | 0.600532 | 4_1:-2013766 | None:intergenic |
| CCCTTCAATCATCTCAACCA+TGG | 0.607191 | 4_1:+2010057 | Msa0529020:CDS |
| TCTCACTCCCAGCCAATAAG+CGG | 0.612263 | 4_1:-2011951 | None:intergenic |
| TTGACTATCATTGCAGAACA+AGG | 0.612714 | 4_1:+2013797 | Msa0529020:three_prime_UTR |
| ATACACAGTGGCCAACTACA+AGG | 0.614741 | 4_1:-2014001 | None:intergenic |
| CAACTTATTCCAAAGCGTGT+GGG | 0.616426 | 4_1:-2011834 | None:intergenic |
| TAACTTACCAACAGTGCCAA+CGG | 0.618887 | 4_1:-2012624 | None:intergenic |
| ATCGATGCTATACCTTACTC+GGG | 0.621735 | 4_1:+2011199 | Msa0529020:CDS |
| ACCCTGGTTACTGATGGAGC+AGG | 0.622503 | 4_1:-2010274 | None:intergenic |
| ACTGCTTCATCAGATAGGGC+CGG | 0.627902 | 4_1:-2013114 | None:intergenic |
| CTTATCAGTGTACAAAACCC+TGG | 0.630224 | 4_1:-2010290 | None:intergenic |
| GACGTGTTTCTCAACTGCCA+GGG | 0.634598 | 4_1:-2012579 | None:intergenic |
| CCATGGTTGAGATGATTGAA+GGG | 0.636449 | 4_1:-2010057 | None:intergenic |
| AGTAAGGTATAGCATCGATG+TGG | 0.640745 | 4_1:-2011195 | None:intergenic |
| GCTTCATCAGATAGGGCCGG+TGG | 0.641389 | 4_1:-2013111 | None:intergenic |
| ACCTGCTCCATCAGTAACCA+GGG | 0.647638 | 4_1:+2010273 | Msa0529020:CDS |
| CACTGTTGATGAGTAGCGAG+TGG | 0.650661 | 4_1:+2009881 | Msa0529020:five_prime_UTR |
| TATCCTTCTTAGATGCTGCA+AGG | 0.652589 | 4_1:+2012016 | Msa0529020:CDS |
| GTAAGGTATAGCATCGATGT+GGG | 0.659646 | 4_1:-2011194 | None:intergenic |
| AACTGCCAGGGCTAATTCAG+CGG | 0.666792 | 4_1:-2012567 | None:intergenic |
| CCACCTGTTAGGCATAAGGA+CGG | 0.675285 | 4_1:-2012319 | None:intergenic |
| TAGAATTGCACATAGAACAA+GGG | 0.675382 | 4_1:+2012112 | Msa0529020:CDS |
| TTATATAAGATACTACTGAA+GGG | 0.675800 | 4_1:-2013765 | None:intergenic |
| AGATACTAGAGACATTGATG+AGG | 0.686727 | 4_1:+2012987 | Msa0529020:intron |
| AGAACAAGGGCCTATTCTGG+AGG | 0.689732 | 4_1:+2012125 | Msa0529020:CDS |
| ATTAGAATAACTAAAACCCG+AGG | 0.693337 | 4_1:+2013051 | Msa0529020:CDS |
| GGGCCTATTCTGGAGGACGA+AGG | 0.703853 | 4_1:+2012132 | Msa0529020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATATAAGTAATTATA+AGG | - | chr4_1:2011666-2011685 | None:intergenic | 10.0% |
| !! | ATAGATATTTAATATGTAAT+TGG | + | chr4_1:2012951-2012970 | Msa0529020:intron | 10.0% |
| !!! | AAAAAATCCTTTTATTTTGT+TGG | + | chr4_1:2010183-2010202 | Msa0529020:intron | 15.0% |
| !!! | TTTTTGGATATTTTTTTAGT+TGG | + | chr4_1:2010378-2010397 | Msa0529020:intron | 15.0% |
| !! | TTGTGTATGATTATAAAATT+AGG | + | chr4_1:2010654-2010673 | Msa0529020:intron | 15.0% |
| !!! | TGAGAATTTTAAATTCAAAA+AGG | - | chr4_1:2012477-2012496 | None:intergenic | 15.0% |
| !!! | AGTATTATTTTTAAATCACA+TGG | + | chr4_1:2012519-2012538 | Msa0529020:intron | 15.0% |
| !!! | AAATAAATTGTTTTGAATGA+AGG | - | chr4_1:2012683-2012702 | None:intergenic | 15.0% |
| !!! | TCAAAACAATTTATTTTACA+AGG | + | chr4_1:2012687-2012706 | Msa0529020:intron | 15.0% |
| !! | TGAAAAAAATAAACAACTAT+TGG | - | chr4_1:2012847-2012866 | None:intergenic | 15.0% |
| !! | TCAAAAACCAACAAAATAAA+AGG | - | chr4_1:2010193-2010212 | None:intergenic | 20.0% |
| !!! | CTATATAAAGTTTCAGTTTT+TGG | + | chr4_1:2010362-2010381 | Msa0529020:intron | 20.0% |
| !! | AACAAGAGTAAAGTTTATAA+AGG | - | chr4_1:2010878-2010897 | None:intergenic | 20.0% |
| !!! | TTTGTTATTATTGCTGATAT+AGG | + | chr4_1:2011291-2011310 | Msa0529020:intron | 20.0% |
| !! | TGGTTTAAACAATTATATGT+TGG | - | chr4_1:2011561-2011580 | None:intergenic | 20.0% |
| !! | TTGAAACTTAAAGTAGAATA+TGG | - | chr4_1:2011912-2011931 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTTAAGCAAA+AGG | + | chr4_1:2012387-2012406 | Msa0529020:intron | 20.0% |
| !! | ATGTTTAAATACAAGTAGTT+TGG | + | chr4_1:2012817-2012836 | Msa0529020:intron | 20.0% |
| !! | AAAAATAAACAACTATTGGA+TGG | - | chr4_1:2012843-2012862 | None:intergenic | 20.0% |
| !!! | TTAAAATGTTTTAACTTAGC+AGG | + | chr4_1:2013249-2013268 | Msa0529020:intron | 20.0% |
| !! | AGTATAAAAGATATGTCAAA+TGG | + | chr4_1:2013707-2013726 | Msa0529020:CDS | 20.0% |
| !! | TTATATAAGATACTACTGAA+GGG | - | chr4_1:2013768-2013787 | None:intergenic | 20.0% |
| !! | ATTATATAAGATACTACTGA+AGG | - | chr4_1:2013769-2013788 | None:intergenic | 20.0% |
| !! | AATCTATGTATATAACCATA+AGG | + | chr4_1:2013966-2013985 | Msa0529020:three_prime_UTR | 20.0% |
| !! | ATCTATGTATATAACCATAA+GGG | + | chr4_1:2013967-2013986 | Msa0529020:three_prime_UTR | 20.0% |
| ! | AACAAAACAACCTCAAAAAA+TGG | + | chr4_1:2009928-2009947 | Msa0529020:exon | 25.0% |
| ! | TCATCTTCTCAAATTATTAC+CGG | - | chr4_1:2010464-2010483 | None:intergenic | 25.0% |
| ! | TGATTCAAAGGTGAATTTAA+TGG | + | chr4_1:2010726-2010745 | Msa0529020:intron | 25.0% |
| ! | TAGGTATGTTAAAAATCTCA+TGG | + | chr4_1:2010907-2010926 | Msa0529020:intron | 25.0% |
| ! | AGGTATGTTAAAAATCTCAT+GGG | + | chr4_1:2010908-2010927 | Msa0529020:intron | 25.0% |
| !! | AATACTTTTGTTCAACAATG+TGG | + | chr4_1:2011612-2011631 | Msa0529020:intron | 25.0% |
| ! | TATAAGGAAATAGTTACTTG+TGG | - | chr4_1:2011650-2011669 | None:intergenic | 25.0% |
| !!! | TAAATCACATCTTTGGAATT+TGG | - | chr4_1:2011694-2011713 | None:intergenic | 25.0% |
| ! | GGAAGTCATATTATTTACAT+CGG | + | chr4_1:2011806-2011825 | Msa0529020:CDS | 25.0% |
| ! | TTAGTCAATCAAAGTAACAA+TGG | - | chr4_1:2011881-2011900 | None:intergenic | 25.0% |
| !!! | TCGAGTGTATTTTTAAACAA+AGG | + | chr4_1:2012072-2012091 | Msa0529020:CDS | 25.0% |
| ! | AAGTATATTATACTTGCAAC+TGG | - | chr4_1:2012917-2012936 | None:intergenic | 25.0% |
| ! | AGTTGCAAGTATAATATACT+TGG | + | chr4_1:2012916-2012935 | Msa0529020:intron | 25.0% |
| !!! | CGTGAATTTTTTCAATAACT+TGG | - | chr4_1:2013023-2013042 | None:intergenic | 25.0% |
| !! | ATTTTCATTCCATGTTACAA+AGG | + | chr4_1:2013357-2013376 | Msa0529020:CDS | 25.0% |
| !! | TTGTTGATTGCAAAAACAAT+TGG | - | chr4_1:2013434-2013453 | None:intergenic | 25.0% |
| !!! | CCTCTAAAAATGTTCTTTTT+AGG | - | chr4_1:2013935-2013954 | None:intergenic | 25.0% |
| !!! | CCTAAAAAGAACATTTTTAG+AGG | + | chr4_1:2013932-2013951 | Msa0529020:three_prime_UTR | 25.0% |
| ! | TGTTAATATATCCTTGTAGT+TGG | + | chr4_1:2013990-2014009 | Msa0529020:three_prime_UTR | 25.0% |
| !!! | TAGTGATGAACCATTTTTTG+AGG | - | chr4_1:2009941-2009960 | None:intergenic | 30.0% |
| ! | ATGTTGATGAGATGAAATTG+AGG | - | chr4_1:2010020-2010039 | None:intergenic | 30.0% |
| !!! | GGATATTTTTTTAGTTGGCT+TGG | + | chr4_1:2010383-2010402 | Msa0529020:intron | 30.0% |
| GTAATCAGTATCACATATGT+CGG | + | chr4_1:2010495-2010514 | Msa0529020:intron | 30.0% | |
| GTGAATTTAATGGTGCAAAA+AGG | + | chr4_1:2010736-2010755 | Msa0529020:intron | 30.0% | |
| ! | CAATCAACTTATCATTGACT+CGG | + | chr4_1:2011028-2011047 | Msa0529020:intron | 30.0% |
| ! | TATATAGCTTTACCTTTGCT+TGG | + | chr4_1:2011121-2011140 | Msa0529020:intron | 30.0% |
| !! | AAACCTTTTCAAGACATTGA+TGG | - | chr4_1:2011266-2011285 | None:intergenic | 30.0% |
| !!! | CAGGTTTTTTCATTTTCACT+TGG | - | chr4_1:2011489-2011508 | None:intergenic | 30.0% |
| TTTGTTCTAATCGTACATAC+AGG | - | chr4_1:2011508-2011527 | None:intergenic | 30.0% | |
| ! | GTTTTGCATCGTTCATAAAA+TGG | - | chr4_1:2011581-2011600 | None:intergenic | 30.0% |
| ATCTGTGTAAATCACATCTT+TGG | - | chr4_1:2011701-2011720 | None:intergenic | 30.0% | |
| AGATCAATCATTATCCACTT+AGG | + | chr4_1:2011717-2011736 | Msa0529020:intron | 30.0% | |
| TTTCAAACCTAAAAGATCGT+TGG | + | chr4_1:2011785-2011804 | Msa0529020:CDS | 30.0% | |
| TAGAATTGCACATAGAACAA+GGG | + | chr4_1:2012112-2012131 | Msa0529020:CDS | 30.0% | |
| TTAAACATTGTAAGAATGCC+AGG | - | chr4_1:2012805-2012824 | None:intergenic | 30.0% | |
| GAAATATTAGTCAGTAGAGA+GGG | - | chr4_1:2012895-2012914 | None:intergenic | 30.0% | |
| ATTAGAATAACTAAAACCCG+AGG | + | chr4_1:2013051-2013070 | Msa0529020:CDS | 30.0% | |
| TGAGTTTCATATCATCAATC+AGG | + | chr4_1:2013086-2013105 | Msa0529020:CDS | 30.0% | |
| CATAAACAAAGAGTCATGAT+AGG | - | chr4_1:2013205-2013224 | None:intergenic | 30.0% | |
| ! | CTATCATGACTCTTTGTTTA+TGG | + | chr4_1:2013203-2013222 | Msa0529020:CDS | 30.0% |
| ATGTACGTTATGTAATTGCA+GGG | + | chr4_1:2013317-2013336 | Msa0529020:intron | 30.0% | |
| CAGTAAATACCTTTGTAACA+TGG | - | chr4_1:2013369-2013388 | None:intergenic | 30.0% | |
| GTTGAATGTAATAACATGTG+CGG | - | chr4_1:2013493-2013512 | None:intergenic | 30.0% | |
| AGTGTTAGATAGAGTTGAAT+AGG | + | chr4_1:2013572-2013591 | Msa0529020:intron | 30.0% | |
| TTTATACTAGCAAACTCTTC+AGG | - | chr4_1:2013695-2013714 | None:intergenic | 30.0% | |
| ! | GTCAAATGGTGTAAAAGTAT+TGG | + | chr4_1:2013721-2013740 | Msa0529020:CDS | 30.0% |
| ! | GGCACATTTTTCACATTATA+TGG | - | chr4_1:2013914-2013933 | None:intergenic | 30.0% |
| AGGATATATTAACACCCTTA+TGG | - | chr4_1:2013984-2014003 | None:intergenic | 30.0% | |
| ! | TCAACCATGGAACAATTTTC+CGG | + | chr4_1:2010070-2010089 | Msa0529020:CDS | 35.0% |
| GATAGTGAAGAGAATGAAGT+GGG | - | chr4_1:2010112-2010131 | None:intergenic | 35.0% | |
| !!! | ATAAGGATGTTTTAGCTCGA+AGG | + | chr4_1:2010308-2010327 | Msa0529020:CDS | 35.0% |
| AAGTGTGTACCTATGAAGTA+CGG | + | chr4_1:2010416-2010435 | Msa0529020:intron | 35.0% | |
| ! | CTTCTAATAGAAAGTGTGTC+TGG | - | chr4_1:2010546-2010565 | None:intergenic | 35.0% |
| TGTACAATCACTACAATTCC+AGG | + | chr4_1:2010600-2010619 | Msa0529020:intron | 35.0% | |
| TAGTCTATTCAAGAACTACC+TGG | - | chr4_1:2010621-2010640 | None:intergenic | 35.0% | |
| !! | ATAGTACTTCGCTGATTCAA+AGG | + | chr4_1:2010714-2010733 | Msa0529020:intron | 35.0% |
| GGTAAACATCTCACATTCTA+AGG | - | chr4_1:2010857-2010876 | None:intergenic | 35.0% | |
| !!! | TACTCTTGTTTTGCATCTGT+AGG | + | chr4_1:2010888-2010907 | Msa0529020:intron | 35.0% |
| AAAAATCTCATGGGAATTGC+TGG | + | chr4_1:2010917-2010936 | Msa0529020:CDS | 35.0% | |
| !! | GATGCTGTTGGTAACATATT+TGG | + | chr4_1:2010956-2010975 | Msa0529020:CDS | 35.0% |
| ! | TTGGTAACATATTTGGTCGT+TGG | + | chr4_1:2010963-2010982 | Msa0529020:CDS | 35.0% |
| !! | CGAGTCAATGATAAGTTGAT+TGG | - | chr4_1:2011030-2011049 | None:intergenic | 35.0% |
| AATCTTCCCTCTATTAGCTA+CGG | + | chr4_1:2011075-2011094 | Msa0529020:intron | 35.0% | |
| TACCTTTGCTTGGTTTATGT+AGG | + | chr4_1:2011131-2011150 | Msa0529020:intron | 35.0% | |
| ACCTTTGCTTGGTTTATGTA+GGG | + | chr4_1:2011132-2011151 | Msa0529020:intron | 35.0% | |
| ! | GGAAAATATGATGGAGTTGT+TGG | + | chr4_1:2011220-2011239 | Msa0529020:CDS | 35.0% |
| AAGCCATCAATGTCTTGAAA+AGG | + | chr4_1:2011260-2011279 | Msa0529020:CDS | 35.0% | |
| CAGCATCTTGAATCTTACTA+CGG | + | chr4_1:2011389-2011408 | Msa0529020:intron | 35.0% | |
| CTCGCTGCAAATTATTTCAA+AGG | + | chr4_1:2011432-2011451 | Msa0529020:intron | 35.0% | |
| ! | ATGACTTCCAACGATCTTTT+AGG | - | chr4_1:2011795-2011814 | None:intergenic | 35.0% |
| TTGGAATAAGTTGCTTAGGA+AGG | + | chr4_1:2011844-2011863 | Msa0529020:CDS | 35.0% | |
| ! | CATCTAAGAAGGATACGTTT+TGG | - | chr4_1:2012011-2012030 | None:intergenic | 35.0% |
| GTAGAATTGCACATAGAACA+AGG | + | chr4_1:2012111-2012130 | Msa0529020:CDS | 35.0% | |
| AGTCTAAGGGTTGAATTTGA+AGG | + | chr4_1:2012276-2012295 | Msa0529020:CDS | 35.0% | |
| GCTCTTGATTAATCAAATCG+AGG | - | chr4_1:2012661-2012680 | None:intergenic | 35.0% | |
| !! | TTTCTATGTGCGATTTGCTA+GGG | - | chr4_1:2012749-2012768 | None:intergenic | 35.0% |
| ! | ATTTCTATGTGCGATTTGCT+AGG | - | chr4_1:2012750-2012769 | None:intergenic | 35.0% |
| AGCAAATCGCACATAGAAAT+TGG | + | chr4_1:2012750-2012769 | Msa0529020:CDS | 35.0% | |
| GGAAATATTAGTCAGTAGAG+AGG | - | chr4_1:2012896-2012915 | None:intergenic | 35.0% | |
| AGATACTAGAGACATTGATG+AGG | + | chr4_1:2012987-2013006 | Msa0529020:intron | 35.0% | |
| TAGCAGGAAATATTACACAG+TGG | + | chr4_1:2013265-2013284 | Msa0529020:intron | 35.0% | |
| CATGTACGTTATGTAATTGC+AGG | + | chr4_1:2013316-2013335 | Msa0529020:intron | 35.0% | |
| ATACTACTGAAGGGACAATT+TGG | - | chr4_1:2013759-2013778 | None:intergenic | 35.0% | |
| TTGACTATCATTGCAGAACA+AGG | + | chr4_1:2013797-2013816 | Msa0529020:three_prime_UTR | 35.0% | |
| ! | TATACCCTTTTTGTCTAACG+TGG | + | chr4_1:2013875-2013894 | Msa0529020:three_prime_UTR | 35.0% |
| CCATGGTTGAGATGATTGAA+GGG | - | chr4_1:2010060-2010079 | None:intergenic | 40.0% | |
| TCCATGGTTGAGATGATTGA+AGG | - | chr4_1:2010061-2010080 | None:intergenic | 40.0% | |
| GTAACCGGAAAATTGTTCCA+TGG | - | chr4_1:2010077-2010096 | None:intergenic | 40.0% | |
| GGGTTCAAGAATTGAGTAAC+CGG | - | chr4_1:2010092-2010111 | None:intergenic | 40.0% | |
| GGATAGTGAAGAGAATGAAG+TGG | - | chr4_1:2010113-2010132 | None:intergenic | 40.0% | |
| ATGATTGAGTGTACTGTACC+TGG | - | chr4_1:2010159-2010178 | None:intergenic | 40.0% | |
| TACAAAACCCTGGTTACTGA+TGG | - | chr4_1:2010283-2010302 | None:intergenic | 40.0% | |
| CTTATCAGTGTACAAAACCC+TGG | - | chr4_1:2010293-2010312 | None:intergenic | 40.0% | |
| !! | CAGGGTTTTGTACACTGATA+AGG | + | chr4_1:2010291-2010310 | Msa0529020:CDS | 40.0% |
| CAACACTGACACATTTGTAC+CGG | + | chr4_1:2010442-2010461 | Msa0529020:intron | 40.0% | |
| AGTATCACATATGTCGGTGT+CGG | + | chr4_1:2010501-2010520 | Msa0529020:intron | 40.0% | |
| AGTACAAGAAGAGTGGCATA+TGG | + | chr4_1:2010574-2010593 | Msa0529020:intron | 40.0% | |
| AATGGTGCAAAAAGGATGTG+CGG | + | chr4_1:2010744-2010763 | Msa0529020:intron | 40.0% | |
| ATTCCTCAAAAGCTCTCTCT+GGG | + | chr4_1:2010995-2011014 | Msa0529020:intron | 40.0% | |
| GCTAAACCGTAGCTAATAGA+GGG | - | chr4_1:2011084-2011103 | None:intergenic | 40.0% | |
| CTCTATTAGCTACGGTTTAG+CGG | + | chr4_1:2011083-2011102 | Msa0529020:intron | 40.0% | |
| TCCCTACATAAACCAAGCAA+AGG | - | chr4_1:2011136-2011155 | None:intergenic | 40.0% | |
| TTGCTTGGTTTATGTAGGGA+TGG | + | chr4_1:2011136-2011155 | Msa0529020:intron | 40.0% | |
| !! | GTAAGGTATAGCATCGATGT+GGG | - | chr4_1:2011197-2011216 | None:intergenic | 40.0% |
| !! | AGTAAGGTATAGCATCGATG+TGG | - | chr4_1:2011198-2011217 | None:intergenic | 40.0% |
| CATCGATGCTATACCTTACT+CGG | + | chr4_1:2011198-2011217 | Msa0529020:CDS | 40.0% | |
| ATCGATGCTATACCTTACTC+GGG | + | chr4_1:2011199-2011218 | Msa0529020:CDS | 40.0% | |
| ! | CCATCATATTTTCCCGAGTA+AGG | - | chr4_1:2011214-2011233 | None:intergenic | 40.0% |
| CCTTACTCGGGAAAATATGA+TGG | + | chr4_1:2011211-2011230 | Msa0529020:CDS | 40.0% | |
| ! | GATGGAGTTGTTGGAGTTTT+AGG | + | chr4_1:2011229-2011248 | Msa0529020:CDS | 40.0% |
| CAACTTATTCCAAAGCGTGT+GGG | - | chr4_1:2011837-2011856 | None:intergenic | 40.0% | |
| !! | CGCTTTGGAATAAGTTGCTT+AGG | + | chr4_1:2011840-2011859 | Msa0529020:CDS | 40.0% |
| TATCCTTCTTAGATGCTGCA+AGG | + | chr4_1:2012016-2012035 | Msa0529020:CDS | 40.0% | |
| CTCGACTCAGGTATATCTAT+AGG | + | chr4_1:2012225-2012244 | Msa0529020:intron | 40.0% | |
| AATTCAACCCTTAGACTTGC+AGG | - | chr4_1:2012273-2012292 | None:intergenic | 40.0% | |
| AGGGTTGAATTTGAAGGCAA+TGG | + | chr4_1:2012282-2012301 | Msa0529020:CDS | 40.0% | |
| GTTGAATTTGAAGGCAATGG+TGG | + | chr4_1:2012285-2012304 | Msa0529020:CDS | 40.0% | |
| AGAAACACGTCTTGGAATCT+GGG | + | chr4_1:2012591-2012610 | Msa0529020:CDS | 40.0% | |
| TAACTTACCAACAGTGCCAA+CGG | - | chr4_1:2012627-2012646 | None:intergenic | 40.0% | |
| ACGACAATTTGAGTCATACC+TGG | + | chr4_1:2012784-2012803 | Msa0529020:intron | 40.0% | |
| TATCATCAATCAGGATCCAC+CGG | + | chr4_1:2013095-2013114 | Msa0529020:CDS | 40.0% | |
| ! | ATGACTCTTTGTTTATGGCC+AGG | + | chr4_1:2013208-2013227 | Msa0529020:CDS | 40.0% |
| CTTATCTTCCTGCAAATACC+TGG | - | chr4_1:2013229-2013248 | None:intergenic | 40.0% | |
| GGAATGAAAATCATGCCCAT+TGG | - | chr4_1:2013348-2013367 | None:intergenic | 40.0% | |
| CAACTCTATCTAACACTGAC+AGG | - | chr4_1:2013569-2013588 | None:intergenic | 40.0% | |
| TAGCAAACTCTTCAGGCTTA+TGG | - | chr4_1:2013688-2013707 | None:intergenic | 40.0% | |
| CCCTTCAATCATCTCAACCA+TGG | + | chr4_1:2010057-2010076 | Msa0529020:CDS | 45.0% | |
| TTGCAGAGTCTGAGCATCAT+AGG | - | chr4_1:2010134-2010153 | None:intergenic | 45.0% | |
| GTGTTGTGTCCGTACTTCAT+AGG | - | chr4_1:2010428-2010447 | None:intergenic | 45.0% | |
| GACAGTGAGTACAAGAAGAG+TGG | + | chr4_1:2010567-2010586 | Msa0529020:intron | 45.0% | |
| ATGGTGCAAAAAGGATGTGC+GGG | + | chr4_1:2010745-2010764 | Msa0529020:intron | 45.0% | |
| ! | TGCTGGTCTATCTGTAAGAG+AGG | + | chr4_1:2010934-2010953 | Msa0529020:CDS | 45.0% |
| TCTGTAAGAGAGGATGCTGT+TGG | + | chr4_1:2010944-2010963 | Msa0529020:CDS | 45.0% | |
| CATTCCTCAAAAGCTCTCTC+TGG | + | chr4_1:2010994-2011013 | Msa0529020:intron | 45.0% | |
| CGCTAAACCGTAGCTAATAG+AGG | - | chr4_1:2011085-2011104 | None:intergenic | 45.0% | |
| GAGACTATCAGAACGGTGAA+AGG | - | chr4_1:2011415-2011434 | None:intergenic | 45.0% | |
| TTGCAGCGAGACTATCAGAA+CGG | - | chr4_1:2011422-2011441 | None:intergenic | 45.0% | |
| AACGTTGCTACTCACCTAAG+TGG | - | chr4_1:2011734-2011753 | None:intergenic | 45.0% | |
| CTGTGAAGGCTTAGTCAGTA+TGG | - | chr4_1:2011759-2011778 | None:intergenic | 45.0% | |
| ! | CATACTGACTAAGCCTTCAC+AGG | + | chr4_1:2011757-2011776 | Msa0529020:intron | 45.0% |
| ! | GTTTGAAACCAGACCTGTGA+AGG | - | chr4_1:2011773-2011792 | None:intergenic | 45.0% |
| GCAACTTATTCCAAAGCGTG+TGG | - | chr4_1:2011838-2011857 | None:intergenic | 45.0% | |
| AGACCTTGCAGCATCTAAGA+AGG | - | chr4_1:2012022-2012041 | None:intergenic | 45.0% | |
| CATAGAACAAGGGCCTATTC+TGG | + | chr4_1:2012122-2012141 | Msa0529020:CDS | 45.0% | |
| ! | CGTCATTTGTTTCTCGACTC+AGG | + | chr4_1:2012213-2012232 | Msa0529020:intron | 45.0% |
| AAAGATAGCAGCCACCTGTT+AGG | - | chr4_1:2012333-2012352 | None:intergenic | 45.0% | |
| ACATGGAGCAGAAATGATGC+TGG | + | chr4_1:2012536-2012555 | Msa0529020:intron | 45.0% | |
| GAGAAACACGTCTTGGAATC+TGG | + | chr4_1:2012590-2012609 | Msa0529020:CDS | 45.0% | |
| GACGACTGCTTCATCAGATA+GGG | - | chr4_1:2013121-2013140 | None:intergenic | 45.0% | |
| TGACGACTGCTTCATCAGAT+AGG | - | chr4_1:2013122-2013141 | None:intergenic | 45.0% | |
| GTTTATGGCCAGGTATTTGC+AGG | + | chr4_1:2013218-2013237 | Msa0529020:intron | 45.0% | |
| ! | TAATTGCAGGGTGTCTCCAA+TGG | + | chr4_1:2013329-2013348 | Msa0529020:intron | 45.0% |
| ! | AATTGCAGGGTGTCTCCAAT+GGG | + | chr4_1:2013330-2013349 | Msa0529020:intron | 45.0% |
| ! | TGTGCGGTTTTTGTCTGTGT+CGG | - | chr4_1:2013477-2013496 | None:intergenic | 45.0% |
| TATCATCGTTGCCACATGTC+TGG | + | chr4_1:2013535-2013554 | Msa0529020:intron | 45.0% | |
| CTGAAGGGACAATTTGGCTA+AGG | - | chr4_1:2013753-2013772 | None:intergenic | 45.0% | |
| ! | ACCCTTTTTGTCTAACGTGG+AGG | + | chr4_1:2013878-2013897 | Msa0529020:three_prime_UTR | 45.0% |
| CCCTCCACGTTAGACAAAAA+GGG | - | chr4_1:2013882-2013901 | None:intergenic | 45.0% | |
| ! | CCCTTTTTGTCTAACGTGGA+GGG | + | chr4_1:2013879-2013898 | Msa0529020:three_prime_UTR | 45.0% |
| ACCCTCCACGTTAGACAAAA+AGG | - | chr4_1:2013883-2013902 | None:intergenic | 45.0% | |
| ! | CACTGTTGATGAGTAGCGAG+TGG | + | chr4_1:2009881-2009900 | Msa0529020:five_prime_UTR | 50.0% |
| TGCTCAGACTCTGCAAAACC+AGG | + | chr4_1:2010138-2010157 | Msa0529020:CDS | 50.0% | |
| ACCTGCTCCATCAGTAACCA+GGG | + | chr4_1:2010273-2010292 | Msa0529020:CDS | 50.0% | |
| ! | GATCCCAGAGAGAGCTTTTG+AGG | - | chr4_1:2011001-2011020 | None:intergenic | 50.0% |
| TGACTAAGCCTTCACAGGTC+TGG | + | chr4_1:2011762-2011781 | Msa0529020:intron | 50.0% | |
| TGCTTTGTGCAGCCGCTTAT+TGG | + | chr4_1:2011939-2011958 | Msa0529020:intron | 50.0% | |
| TCTCACTCCCAGCCAATAAG+CGG | - | chr4_1:2011954-2011973 | None:intergenic | 50.0% | |
| TTAGATGCTGCAAGGTCTGC+TGG | + | chr4_1:2012024-2012043 | Msa0529020:CDS | 50.0% | |
| AGAACAAGGGCCTATTCTGG+AGG | + | chr4_1:2012125-2012144 | Msa0529020:CDS | 50.0% | |
| GTACCTTCGTCCTCCAGAAT+AGG | - | chr4_1:2012138-2012157 | None:intergenic | 50.0% | |
| TAGACTTGCAGGAGCTGCAA+TGG | - | chr4_1:2012262-2012281 | None:intergenic | 50.0% | |
| TTGCAGCTCCTGCAAGTCTA+AGG | + | chr4_1:2012262-2012281 | Msa0529020:CDS | 50.0% | |
| TGCAGCTCCTGCAAGTCTAA+GGG | + | chr4_1:2012263-2012282 | Msa0529020:CDS | 50.0% | |
| CCACCTGTTAGGCATAAGGA+CGG | - | chr4_1:2012322-2012341 | None:intergenic | 50.0% | |
| GAGCAGAAATGATGCTGGTC+TGG | + | chr4_1:2012541-2012560 | Msa0529020:intron | 50.0% | |
| AACTGCCAGGGCTAATTCAG+CGG | - | chr4_1:2012570-2012589 | None:intergenic | 50.0% | |
| GACGTGTTTCTCAACTGCCA+GGG | - | chr4_1:2012582-2012601 | None:intergenic | 50.0% | |
| AGACGTGTTTCTCAACTGCC+AGG | - | chr4_1:2012583-2012602 | None:intergenic | 50.0% | |
| GGCAGTTGAGAAACACGTCT+TGG | + | chr4_1:2012583-2012602 | Msa0529020:CDS | 50.0% | |
| TCTGGGTCTGTTGATACCGT+TGG | + | chr4_1:2012608-2012627 | Msa0529020:CDS | 50.0% | |
| GTTGATACCGTTGGCACTGT+TGG | + | chr4_1:2012617-2012636 | Msa0529020:CDS | 50.0% | |
| ! | GGGATGCTATTGATTGCTCC+AGG | - | chr4_1:2012729-2012748 | None:intergenic | 50.0% |
| ACTCAGTGAGCTTGACACCT+CGG | - | chr4_1:2013071-2013090 | None:intergenic | 50.0% | |
| ACTGCTTCATCAGATAGGGC+CGG | - | chr4_1:2013117-2013136 | None:intergenic | 50.0% | |
| TGAAGCAGTCGTCAACGCAA+TGG | + | chr4_1:2013128-2013147 | Msa0529020:CDS | 50.0% | |
| CGTTGCCACATGTCTGGTAT+TGG | + | chr4_1:2013541-2013560 | Msa0529020:intron | 50.0% | |
| AGGCACCAATACCAGACATG+TGG | - | chr4_1:2013549-2013568 | None:intergenic | 50.0% | |
| CACCTGCTCCATCAGTAACC+AGG | + | chr4_1:2010272-2010291 | Msa0529020:CDS | 55.0% | |
| ACCCTGGTTACTGATGGAGC+AGG | - | chr4_1:2010277-2010296 | None:intergenic | 55.0% | |
| TGTAGGGATGGCAGTGAACC+CGG | + | chr4_1:2011148-2011167 | Msa0529020:intron | 55.0% | |
| TGTTGCAACTGCAGCAAGCC+CGG | - | chr4_1:2011170-2011189 | None:intergenic | 55.0% | |
| TCGGAAGAACCCACACGCTT+TGG | + | chr4_1:2011825-2011844 | Msa0529020:CDS | 55.0% | |
| TTGTGCAGCCGCTTATTGGC+TGG | + | chr4_1:2011943-2011962 | Msa0529020:intron | 55.0% | |
| ! | TGTGCAGCCGCTTATTGGCT+GGG | + | chr4_1:2011944-2011963 | Msa0529020:intron | 55.0% |
| GTGCCGTCCTTATGCCTAAC+AGG | + | chr4_1:2012316-2012335 | Msa0529020:CDS | 55.0% | |
| CCGTCCTTATGCCTAACAGG+TGG | + | chr4_1:2012319-2012338 | Msa0529020:intron | 55.0% | |
| GCAGCCACCTGTTAGGCATA+AGG | - | chr4_1:2012326-2012345 | None:intergenic | 55.0% | |
| GGTATCCTGCAACTGCATCC+TGG | + | chr4_1:2012708-2012727 | Msa0529020:intron | 55.0% | |
| TTGCTCCAGGATGCAGTTGC+AGG | - | chr4_1:2012716-2012735 | None:intergenic | 55.0% | |
| CTCAGTGAGCTTGACACCTC+GGG | - | chr4_1:2013070-2013089 | None:intergenic | 55.0% | |
| !! | CTTGTCGTCGTCGTTTTCGC+AGG | + | chr4_1:2013656-2013675 | Msa0529020:intron | 55.0% |
| !! | GTGTCGGCACTGACACACGT+CGG | + | chr4_1:2010517-2010536 | Msa0529020:intron | 60.0% |
| GTAGGGATGGCAGTGAACCC+GGG | + | chr4_1:2011149-2011168 | Msa0529020:intron | 60.0% | |
| GTTGCAACTGCAGCAAGCCC+GGG | - | chr4_1:2011169-2011188 | None:intergenic | 60.0% | |
| !! | GGGCTTGCTGCAGTTGCAAC+AGG | + | chr4_1:2011169-2011188 | Msa0529020:CDS | 60.0% |
| ! | GGGCCTATTCTGGAGGACGA+AGG | + | chr4_1:2012132-2012151 | Msa0529020:CDS | 60.0% |
| GAAGGCAATGGTGGCCATGC+AGG | + | chr4_1:2012294-2012313 | Msa0529020:CDS | 60.0% | |
| GCATAAGGACGGCACCTGCA+TGG | - | chr4_1:2012311-2012330 | None:intergenic | 60.0% | |
| GCTTCATCAGATAGGGCCGG+TGG | - | chr4_1:2013114-2013133 | None:intergenic | 60.0% | |
| GGCAGCCGCTGAATTAGCCC+TGG | + | chr4_1:2012562-2012581 | Msa0529020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 2009880 | 2014016 | 2009880 | ID=Msa0529020;Name=Msa0529020 |
| chr4_1 | mRNA | 2009880 | 2014016 | 2009880 | ID=Msa0529020-mRNA-1;Parent=Msa0529020;Name=Msa0529020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=67|1|1|1|0.63|0.83|12|241|476 |
| chr4_1 | exon | 2009880 | 2010159 | 2009880 | ID=Msa0529020-mRNA-1:exon:615;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2010244 | 2010329 | 2010244 | ID=Msa0529020-mRNA-1:exon:616;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2010910 | 2010984 | 2010910 | ID=Msa0529020-mRNA-1:exon:617;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2011153 | 2011281 | 2011153 | ID=Msa0529020-mRNA-1:exon:618;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2011779 | 2011865 | 2011779 | ID=Msa0529020-mRNA-1:exon:619;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2011951 | 2012153 | 2011951 | ID=Msa0529020-mRNA-1:exon:620;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2012235 | 2012337 | 2012235 | ID=Msa0529020-mRNA-1:exon:621;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2012547 | 2012638 | 2012547 | ID=Msa0529020-mRNA-1:exon:622;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2012709 | 2012771 | 2012709 | ID=Msa0529020-mRNA-1:exon:623;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2012989 | 2013229 | 2012989 | ID=Msa0529020-mRNA-1:exon:624;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2013338 | 2013378 | 2013338 | ID=Msa0529020-mRNA-1:exon:625;Parent=Msa0529020-mRNA-1 |
| chr4_1 | exon | 2013678 | 2014016 | 2013678 | ID=Msa0529020-mRNA-1:exon:626;Parent=Msa0529020-mRNA-1 |
| chr4_1 | five_prime_UTR | 2009880 | 2009946 | 2009880 | ID=Msa0529020-mRNA-1:five_prime_utr;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2009947 | 2010159 | 2009947 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2010244 | 2010329 | 2010244 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2010910 | 2010984 | 2010910 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2011153 | 2011281 | 2011153 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2011779 | 2011865 | 2011779 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2011951 | 2012153 | 2011951 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2012235 | 2012337 | 2012235 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2012547 | 2012638 | 2012547 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2012709 | 2012771 | 2012709 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2012989 | 2013229 | 2012989 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2013338 | 2013378 | 2013338 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | CDS | 2013678 | 2013775 | 2013678 | ID=Msa0529020-mRNA-1:cds;Parent=Msa0529020-mRNA-1 |
| chr4_1 | three_prime_UTR | 2013776 | 2014016 | 2013776 | ID=Msa0529020-mRNA-1:three_prime_utr;Parent=Msa0529020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
