Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169990 | XP_003590794.1 | 88.000 | 250 | 17 | 1 | 1 | 237 | 1 | 250 | 5.41e-154 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169990 | sp|Q682V0|XRCC4_ARATH | 54.733 | 243 | 92 | 3 | 4 | 232 | 22 | 260 | 3.03e-85 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169990 | G7I3Z1 | 88.000 | 250 | 17 | 1 | 1 | 237 | 1 | 250 | 2.58e-154 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111080 | Msa0169990 | 0.804225 | 2.392322e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169990 | MtrunA17_Chr1g0187151 | 88.000 | 250 | 17 | 1 | 1 | 237 | 1 | 250 | 4.97e-158 | 442 |
| Msa0169990 | MtrunA17_Chr1g0187201 | 87.931 | 58 | 7 | 0 | 233 | 290 | 9 | 66 | 3.15e-28 | 104 |
| Msa0169990 | MtrunA17_Chr5g0442291 | 86.207 | 58 | 8 | 0 | 233 | 290 | 8 | 65 | 6.16e-27 | 101 |
| Msa0169990 | MtrunA17_Chr1g0187221 | 82.759 | 58 | 10 | 0 | 233 | 290 | 10 | 67 | 4.13e-25 | 96.3 |
| Msa0169990 | MtrunA17_Chr1g0187161 | 79.310 | 58 | 12 | 0 | 233 | 290 | 8 | 65 | 1.30e-23 | 92.4 |
| Msa0169990 | MtrunA17_Chr1g0184411 | 57.143 | 56 | 24 | 0 | 233 | 288 | 8 | 63 | 1.14e-12 | 62.4 |
| Msa0169990 | MtrunA17_Chr1g0184401 | 51.724 | 58 | 28 | 0 | 233 | 290 | 11 | 68 | 1.02e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169990 | AT3G23100.1 | 54.733 | 243 | 92 | 3 | 4 | 232 | 22 | 260 | 3.08e-86 | 261 |
| Msa0169990 | AT3G23100.2 | 54.733 | 243 | 92 | 3 | 4 | 232 | 22 | 260 | 3.08e-86 | 261 |
| Msa0169990 | AT1G61410.1 | 51.695 | 118 | 52 | 2 | 116 | 232 | 1 | 114 | 4.60e-28 | 106 |
| Msa0169990 | AT2G38870.1 | 59.322 | 59 | 24 | 0 | 232 | 290 | 7 | 65 | 4.01e-17 | 75.1 |
| Msa0169990 | AT5G43580.1 | 47.222 | 72 | 36 | 1 | 219 | 290 | 25 | 94 | 2.66e-13 | 65.5 |
| Msa0169990 | AT2G38900.2 | 49.180 | 61 | 29 | 1 | 228 | 288 | 23 | 81 | 7.10e-12 | 61.2 |
| Msa0169990 | AT2G38900.1 | 50.000 | 56 | 28 | 0 | 233 | 288 | 11 | 66 | 2.48e-11 | 59.3 |
Find 71 sgRNAs with CRISPR-Local
Find 723 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGTCTGAGCGGTATT+TGG | 0.234417 | 1_4:+53530347 | Msa0169990:CDS |
| CTTTGACAGGGTTAGGGTTT+GGG | 0.252638 | 1_4:+53535075 | Msa0169990:CDS |
| CATGCGAGTCTAGTTCTCTT+TGG | 0.292545 | 1_4:-53539169 | None:intergenic |
| AATCCTCAAAAGTGTATTAC+TGG | 0.314099 | 1_4:+53539105 | Msa0169990:CDS |
| GAATTGTCTGAGCGGTATTT+GGG | 0.316473 | 1_4:+53530348 | Msa0169990:CDS |
| AATGCTATCATTGTGCTAAA+AGG | 0.327630 | 1_4:+53535028 | Msa0169990:CDS |
| GAAAACTACTGCAGAAATAT+TGG | 0.339315 | 1_4:+53531255 | Msa0169990:CDS |
| GCTTTGACAGGGTTAGGGTT+TGG | 0.343053 | 1_4:+53535074 | Msa0169990:CDS |
| TAAAGATGGAATTGTCTATC+AGG | 0.346883 | 1_4:+53535102 | Msa0169990:CDS |
| TTCAAATTCCACCCTTTCAT+TGG | 0.363589 | 1_4:-53533276 | None:intergenic |
| ACTTCCGCTTTGACAGGGTT+AGG | 0.370402 | 1_4:+53535068 | Msa0169990:CDS |
| CCGATGACTTCCGCTTTGAC+AGG | 0.379788 | 1_4:+53535062 | Msa0169990:CDS |
| TATTTGGGGTTTCGACAACC+TGG | 0.386028 | 1_4:+53530363 | Msa0169990:CDS |
| TACGAATATTGATTCTTCTT+CGG | 0.389512 | 1_4:-53530110 | None:intergenic |
| TTAGAAAACTGAGAAGTTTG+AGG | 0.405759 | 1_4:+53539054 | Msa0169990:intron |
| AGGGTTTGGGTTGATAAAGA+TGG | 0.412719 | 1_4:+53535088 | Msa0169990:CDS |
| TCACCGACGGTTTCACCGCT+TGG | 0.415773 | 1_4:+53530170 | Msa0169990:CDS |
| TGTTCTCAGGAAAGAGTTCA+TGG | 0.421985 | 1_4:+53534939 | Msa0169990:intron |
| CTTCCGCTTTGACAGGGTTA+GGG | 0.427455 | 1_4:+53535069 | Msa0169990:CDS |
| CAATATTCGTAAAGGGTACA+TGG | 0.440563 | 1_4:+53530122 | Msa0169990:CDS |
| GAAGAATCAATATTCGTAAA+GGG | 0.446201 | 1_4:+53530115 | Msa0169990:CDS |
| CCTTCCACTCCAACCAACTC+TGG | 0.454716 | 1_4:-53534962 | None:intergenic |
| TGCTGCTCAGTGGGACCAGC+CGG | 0.460985 | 1_4:+53530311 | Msa0169990:CDS |
| TTCTCATGGATGCAAACATA+AGG | 0.465523 | 1_4:+53531281 | Msa0169990:CDS |
| AGAAGAATCAATATTCGTAA+AGG | 0.465776 | 1_4:+53530114 | Msa0169990:CDS |
| ACTAGTTCTTCGAAGGATGT+TGG | 0.485278 | 1_4:+53533800 | Msa0169990:CDS |
| GAAGCAGCGTGCTGCTCAGT+GGG | 0.494105 | 1_4:+53530302 | Msa0169990:CDS |
| AGCGGTGAAACCGTCGGTGA+TGG | 0.496517 | 1_4:-53530167 | None:intergenic |
| AGAAATATTGGACTTTCTCA+TGG | 0.496713 | 1_4:+53531267 | Msa0169990:CDS |
| AAATTACTGTAACAATTTGA+AGG | 0.515198 | 1_4:-53530014 | None:intergenic |
| CCAGAGTTGGTTGGAGTGGA+AGG | 0.515293 | 1_4:+53534962 | Msa0169990:CDS |
| GAATGACACTGCATTGGAGA+TGG | 0.516889 | 1_4:+53531206 | Msa0169990:CDS |
| GTGAGAGAATAGCCAATGAA+AGG | 0.523831 | 1_4:+53533264 | Msa0169990:CDS |
| GTTGGTTGGAGTGGAAGGAA+AGG | 0.527079 | 1_4:+53534967 | Msa0169990:CDS |
| TTTGAGGAAGAAAGTGATGA+TGG | 0.527934 | 1_4:+53539070 | Msa0169990:CDS |
| AGGGAGGAATGACACTGCAT+TGG | 0.540751 | 1_4:+53531200 | Msa0169990:CDS |
| ATGGCCAGAGTTGGTTGGAG+TGG | 0.545068 | 1_4:+53534958 | Msa0169990:CDS |
| TAGCAGAAGCTACGATTCAG+AGG | 0.553268 | 1_4:+53534990 | Msa0169990:CDS |
| TGAGAGAATAGCCAATGAAA+GGG | 0.557370 | 1_4:+53533265 | Msa0169990:CDS |
| AAAGAGTTCATGGCCAGAGT+TGG | 0.558924 | 1_4:+53534949 | Msa0169990:CDS |
| CCACGTACTCTTCCACCGGC+TGG | 0.560726 | 1_4:-53530326 | None:intergenic |
| AGTTCATGGCCAGAGTTGGT+TGG | 0.560974 | 1_4:+53534953 | Msa0169990:CDS |
| GTTGTCGTGGACGTTTGAGA+AGG | 0.561969 | 1_4:+53531180 | Msa0169990:intron |
| GTGTATTACTAGTTCTTCGA+AGG | 0.563762 | 1_4:+53533793 | Msa0169990:CDS |
| ATTAGAAGCTGAGAAGTGCT+TGG | 0.565059 | 1_4:+53533235 | Msa0169990:CDS |
| CGATGACTTCCGCTTTGACA+GGG | 0.566584 | 1_4:+53535063 | Msa0169990:CDS |
| CAGCTGTCAAAACAAGATAA+CGG | 0.575664 | 1_4:+53533677 | Msa0169990:CDS |
| TTCAACCTCTCCATCACCGA+CGG | 0.579618 | 1_4:+53530157 | Msa0169990:CDS |
| ATTTGGGGTTTCGACAACCT+GGG | 0.580929 | 1_4:+53530364 | Msa0169990:CDS |
| TTGTCGTGGACGTTTGAGAA+GGG | 0.583754 | 1_4:+53531181 | Msa0169990:CDS |
| CCTGTCAAAGCGGAAGTCAT+CGG | 0.589248 | 1_4:-53535062 | None:intergenic |
| TGTGAATGTTGCAGTTGTCG+TGG | 0.589936 | 1_4:+53531167 | Msa0169990:intron |
| TGCTCAGTGGGACCAGCCGG+TGG | 0.593157 | 1_4:+53530314 | Msa0169990:CDS |
| CGGCAACAAATCTCTTCAAG+AGG | 0.596675 | 1_4:+53533697 | Msa0169990:CDS |
| AATTCCACGTACTCTTCCAC+CGG | 0.602320 | 1_4:-53530330 | None:intergenic |
| TGAAGCAGCGTGCTGCTCAG+TGG | 0.607329 | 1_4:+53530301 | Msa0169990:CDS |
| TGAATCTCAAATCTATACAA+AGG | 0.608331 | 1_4:+53533295 | Msa0169990:CDS |
| TGAAACCGTCGGTGATGGAG+AGG | 0.615675 | 1_4:-53530162 | None:intergenic |
| CCAGCCGGTGGAAGAGTACG+TGG | 0.619854 | 1_4:+53530326 | Msa0169990:CDS |
| TCGTGGACGTTTGAGAAGGG+AGG | 0.620819 | 1_4:+53531184 | Msa0169990:CDS |
| AGCAGAAGCTACGATTCAGA+GGG | 0.622730 | 1_4:+53534991 | Msa0169990:CDS |
| GATTCAGAGGGAGAATCCAT+CGG | 0.629121 | 1_4:+53535003 | Msa0169990:CDS |
| GTTCCAAGCGGTGAAACCGT+CGG | 0.634326 | 1_4:-53530173 | None:intergenic |
| TTCACCGCTTGGAACTGCAA+CGG | 0.635648 | 1_4:+53530181 | Msa0169990:CDS |
| AAACCCTAACCCTGTCAAAG+CGG | 0.638429 | 1_4:-53535072 | None:intergenic |
| GCAAATGCATAAACAGACCC+AGG | 0.643154 | 1_4:-53530381 | None:intergenic |
| AATTGTCTGAGCGGTATTTG+GGG | 0.650141 | 1_4:+53530349 | Msa0169990:CDS |
| GAGAATAGCCAATGAAAGGG+TGG | 0.673255 | 1_4:+53533268 | Msa0169990:CDS |
| AGTACCGTTGCAGTTCCAAG+CGG | 0.722808 | 1_4:-53530185 | None:intergenic |
| ACAATGATAGCATTCACCGA+TGG | 0.726842 | 1_4:-53535019 | None:intergenic |
| AGTACGTGGAATTGTCTGAG+CGG | 0.752537 | 1_4:+53530340 | Msa0169990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTAAAT+AGG | + | chr1_4:53535674-53535693 | Msa0169990:intron | 0.0% |
| !!! | ATTTATTTATTTTTTAAATA+GGG | + | chr1_4:53535675-53535694 | Msa0169990:intron | 0.0% |
| !! | AATATAATGTTTACATTAAA+TGG | + | chr1_4:53534862-53534881 | Msa0169990:intron | 10.0% |
| !! | ATAAATTTAATGTTTCAATA+AGG | + | chr1_4:53535182-53535201 | Msa0169990:intron | 10.0% |
| !!! | ATTTTATCTGTTTTTATTTT+TGG | + | chr1_4:53535354-53535373 | Msa0169990:intron | 10.0% |
| !! | AAAAAATTTGTATTTAAATC+GGG | - | chr1_4:53535412-53535431 | None:intergenic | 10.0% |
| !!! | GATTTAAATACAAATTTTTT+TGG | + | chr1_4:53535412-53535431 | Msa0169990:intron | 10.0% |
| !!! | TTAAGTTAAATTCTTTTTTA+TGG | + | chr1_4:53536886-53536905 | Msa0169990:intron | 10.0% |
| !! | TAAAAAAAATTATTCAATGT+GGG | - | chr1_4:53538188-53538207 | None:intergenic | 10.0% |
| !! | TTAAAAAAAATTATTCAATG+TGG | - | chr1_4:53538189-53538208 | None:intergenic | 10.0% |
| !! | AAAATAACATTGATATTTAA+AGG | - | chr1_4:53538314-53538333 | None:intergenic | 10.0% |
| !!! | ATAAAATAATTTTTTGCATT+TGG | + | chr1_4:53538379-53538398 | Msa0169990:intron | 10.0% |
| !!! | TAAAATAATTTTTTGCATTT+GGG | + | chr1_4:53538380-53538399 | Msa0169990:intron | 10.0% |
| !!! | TAGTGTTAATTTTTTGAAAT+AGG | + | chr1_4:53530774-53530793 | Msa0169990:intron | 15.0% |
| !! | AAACAGAATGATATAAAAAA+TGG | - | chr1_4:53531086-53531105 | None:intergenic | 15.0% |
| !!! | ATCAATTATTTTATGTGAAA+TGG | + | chr1_4:53531508-53531527 | Msa0169990:intron | 15.0% |
| !!! | ATTTAAAATTTCTACCTAAA+TGG | - | chr1_4:53531790-53531809 | None:intergenic | 15.0% |
| !!! | TAGAAATTTTAAATTACAGT+TGG | + | chr1_4:53531796-53531815 | Msa0169990:intron | 15.0% |
| !!! | ATTACCTTTAAATTTGAAAT+TGG | + | chr1_4:53531899-53531918 | Msa0169990:intron | 15.0% |
| !! | AATTCCAATTTCAAATTTAA+AGG | - | chr1_4:53531906-53531925 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATTGTTGGAT+TGG | - | chr1_4:53532673-53532692 | None:intergenic | 15.0% |
| !!! | ATTTTTACAAAAGATGATTA+AGG | - | chr1_4:53532720-53532739 | None:intergenic | 15.0% |
| !! | TCTTCTATTTATGTATAAAA+GGG | - | chr1_4:53532961-53532980 | None:intergenic | 15.0% |
| !! | ATAAAAGTTAGTTAGTTAAT+TGG | - | chr1_4:53533123-53533142 | None:intergenic | 15.0% |
| !! | TCTATAATCTATAATATATG+TGG | + | chr1_4:53534144-53534163 | Msa0169990:intron | 15.0% |
| !! | CAGTAATTGATAAATAAATA+CGG | - | chr1_4:53534261-53534280 | None:intergenic | 15.0% |
| !!! | AATTTTTTTAGGTAACAAAA+TGG | - | chr1_4:53534541-53534560 | None:intergenic | 15.0% |
| !! | GAAACATTAAATTTATAACT+TGG | - | chr1_4:53535178-53535197 | None:intergenic | 15.0% |
| !!! | ATTATTTACTAGACATTTTT+TGG | - | chr1_4:53535551-53535570 | None:intergenic | 15.0% |
| !!! | AGGCATAAAAAATTTTTAAA+TGG | + | chr1_4:53535715-53535734 | Msa0169990:intron | 15.0% |
| !!! | TGAAAAAGATAACTTTTTAT+TGG | + | chr1_4:53535858-53535877 | Msa0169990:intron | 15.0% |
| !!! | GAAAAAGATAACTTTTTATT+GGG | + | chr1_4:53535859-53535878 | Msa0169990:intron | 15.0% |
| !! | ATATTTAAGTCCAATATATA+TGG | + | chr1_4:53535945-53535964 | Msa0169990:intron | 15.0% |
| !! | GGTATATAAATTTGAAAATT+GGG | - | chr1_4:53537273-53537292 | None:intergenic | 15.0% |
| !! | TGGTATATAAATTTGAAAAT+TGG | - | chr1_4:53537274-53537293 | None:intergenic | 15.0% |
| !! | AAAAAAAATTATTCAATGTG+GGG | - | chr1_4:53538187-53538206 | None:intergenic | 15.0% |
| !!! | TTATCTCAATTTTTTTTATG+GGG | - | chr1_4:53538581-53538600 | None:intergenic | 15.0% |
| !!! | CTTATCTCAATTTTTTTTAT+GGG | - | chr1_4:53538582-53538601 | None:intergenic | 15.0% |
| !!! | AGGTTATTATTTTTTTTTGA+GGG | - | chr1_4:53538613-53538632 | None:intergenic | 15.0% |
| !!! | AAGGTTATTATTTTTTTTTG+AGG | - | chr1_4:53538614-53538633 | None:intergenic | 15.0% |
| !! | AGAGATTAAAATTGATTAAA+GGG | - | chr1_4:53538829-53538848 | None:intergenic | 15.0% |
| !! | AAATTACTGTAACAATTTGA+AGG | - | chr1_4:53530017-53530036 | None:intergenic | 20.0% |
| !!! | AAGTTTTGATTTTGATTTGT+GGG | + | chr1_4:53530244-53530263 | Msa0169990:intron | 20.0% |
| !!! | TGTTGAATTTTTTTTAGCAT+CGG | + | chr1_4:53530269-53530288 | Msa0169990:intron | 20.0% |
| !! | CTTATCTCAAATTATTATTC+AGG | - | chr1_4:53530490-53530509 | None:intergenic | 20.0% |
| !! | ATAATATGAAGTGAAATAGA+AGG | + | chr1_4:53530747-53530766 | Msa0169990:intron | 20.0% |
| !! | GAACACAATATGATTAAATA+AGG | - | chr1_4:53531759-53531778 | None:intergenic | 20.0% |
| !! | AAGGTAATTAATAATGTAAG+AGG | - | chr1_4:53531887-53531906 | None:intergenic | 20.0% |
| !! | TGAAATATACTATACTATCA+AGG | + | chr1_4:53531955-53531974 | Msa0169990:intron | 20.0% |
| !!! | TATCAAAAAGATACATTTTG+TGG | - | chr1_4:53532209-53532228 | None:intergenic | 20.0% |
| !! | TCTTAAACTTGAGTAAATAT+GGG | + | chr1_4:53532273-53532292 | Msa0169990:intron | 20.0% |
| !! | AGTTTCAATATCCATAAAAT+AGG | - | chr1_4:53532359-53532378 | None:intergenic | 20.0% |
| !! | TGAAACTTAAAATATGTCAA+TGG | + | chr1_4:53532372-53532391 | Msa0169990:intron | 20.0% |
| !! | AAACTAGAAAAATAAGAAAC+AGG | - | chr1_4:53532424-53532443 | None:intergenic | 20.0% |
| !! | ATGTTCAAAACTAAATAGAA+GGG | - | chr1_4:53532871-53532890 | None:intergenic | 20.0% |
| !! | AAAATGCATATAATCAAACA+TGG | - | chr1_4:53532903-53532922 | None:intergenic | 20.0% |
| !! | CTCTTCTATTTATGTATAAA+AGG | - | chr1_4:53532962-53532981 | None:intergenic | 20.0% |
| !!! | AGTCGATTTGATAATAATAT+AGG | - | chr1_4:53534210-53534229 | None:intergenic | 20.0% |
| !! | ATACAAGAAAAGATAAGAAT+TGG | - | chr1_4:53534410-53534429 | None:intergenic | 20.0% |
| !! | TAACAAAATGGTTATAGAAT+TGG | - | chr1_4:53534529-53534548 | None:intergenic | 20.0% |
| !!! | GCATACATGTTAATTTTTTT+AGG | - | chr1_4:53534552-53534571 | None:intergenic | 20.0% |
| !!! | TTATGGGTTTTTTTTATTAC+AGG | - | chr1_4:53534673-53534692 | None:intergenic | 20.0% |
| !! | TGTAATAAAAAAAACCCATA+AGG | + | chr1_4:53534672-53534691 | Msa0169990:intron | 20.0% |
| !!! | AGTGTATTTATAGTAGTTTT+TGG | - | chr1_4:53534704-53534723 | None:intergenic | 20.0% |
| !! | AATTGCAAAAAGAAAGAAAA+AGG | + | chr1_4:53534761-53534780 | Msa0169990:intron | 20.0% |
| !! | AAAATAGTCATACATATTGA+AGG | + | chr1_4:53534789-53534808 | Msa0169990:intron | 20.0% |
| !! | AGTTTAGTATAGTATAGAAT+TGG | - | chr1_4:53535221-53535240 | None:intergenic | 20.0% |
| !! | TTCTATACTATACTAAACTA+TGG | + | chr1_4:53535222-53535241 | Msa0169990:intron | 20.0% |
| !!! | CTCCATATTTTAAAAATAGA+GGG | - | chr1_4:53535381-53535400 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAATATGGAGCTT+TGG | + | chr1_4:53535384-53535403 | Msa0169990:intron | 20.0% |
| !!! | AAAATTTTTAAATGGTGACT+CGG | + | chr1_4:53535723-53535742 | Msa0169990:intron | 20.0% |
| !! | TTGTTTGAAAATATTTGATG+TGG | - | chr1_4:53535784-53535803 | None:intergenic | 20.0% |
| !!! | ACCAAATTAAAAGGTTTTTT+TGG | + | chr1_4:53535819-53535838 | Msa0169990:intron | 20.0% |
| !!! | TCCAAAAAAACCTTTTAATT+TGG | - | chr1_4:53535823-53535842 | None:intergenic | 20.0% |
| !! | AACTAATTGACCATATATAT+TGG | - | chr1_4:53535958-53535977 | None:intergenic | 20.0% |
| !!! | TGAACTATTTTACTAAATGT+CGG | + | chr1_4:53536051-53536070 | Msa0169990:intron | 20.0% |
| !! | ATTAAATAATATTGTGTTGC+AGG | + | chr1_4:53536336-53536355 | Msa0169990:intron | 20.0% |
| !! | ATTATTAGTTAGAAACTGAT+AGG | - | chr1_4:53536425-53536444 | None:intergenic | 20.0% |
| !! | TATCAGTTTCTAACTAATAA+TGG | + | chr1_4:53536424-53536443 | Msa0169990:intron | 20.0% |
| !! | CATTATACCTCATTATTATT+TGG | + | chr1_4:53536775-53536794 | Msa0169990:intron | 20.0% |
| !!! | ACTTTTTCTAACAAAAGAAA+AGG | - | chr1_4:53536867-53536886 | None:intergenic | 20.0% |
| !! | AAAAATCTCTTTCTTTGTAT+GGG | + | chr1_4:53536957-53536976 | Msa0169990:intron | 20.0% |
| !! | ATTAAATAGTTAAAAAGTCG+AGG | - | chr1_4:53537178-53537197 | None:intergenic | 20.0% |
| !!! | AAAAAAAGAGAGTAGTTTTT+AGG | - | chr1_4:53537240-53537259 | None:intergenic | 20.0% |
| !! | ATTTGAAAATTGGGTAATTT+GGG | - | chr1_4:53537264-53537283 | None:intergenic | 20.0% |
| !! | AATTTGAAAATTGGGTAATT+TGG | - | chr1_4:53537265-53537284 | None:intergenic | 20.0% |
| !! | TAGAATTCATAGGATAAATT+AGG | - | chr1_4:53537388-53537407 | None:intergenic | 20.0% |
| !! | TTATTTAAGTCATTCTTATG+AGG | - | chr1_4:53537429-53537448 | None:intergenic | 20.0% |
| !! | TCATAAGAATGACTTAAATA+AGG | + | chr1_4:53537428-53537447 | Msa0169990:intron | 20.0% |
| !!! | AAGAGTAAAAAACTTTTCAT+GGG | - | chr1_4:53537543-53537562 | None:intergenic | 20.0% |
| !! | AAATAAGGAAAAACTTATCT+AGG | - | chr1_4:53537569-53537588 | None:intergenic | 20.0% |
| !!! | TGATTTTCATATGAGTTTAT+AGG | - | chr1_4:53537736-53537755 | None:intergenic | 20.0% |
| !!! | TGTTGATTATACATTTATCT+TGG | - | chr1_4:53537834-53537853 | None:intergenic | 20.0% |
| !! | TTCACCAACTTTATTAAAAT+CGG | - | chr1_4:53537977-53537996 | None:intergenic | 20.0% |
| !!! | AATGTTATTTTTCTATAACG+CGG | + | chr1_4:53538323-53538342 | Msa0169990:intron | 20.0% |
| !!! | GCTTATCTCAATTTTTTTTA+TGG | - | chr1_4:53538583-53538602 | None:intergenic | 20.0% |
| !!! | TTATTATTTTTTTTTGAGGG+AGG | - | chr1_4:53538610-53538629 | None:intergenic | 20.0% |
| !!! | TTGCTTCATTTTGATAATAA+GGG | - | chr1_4:53538738-53538757 | None:intergenic | 20.0% |
| !! | GAGAGATTAAAATTGATTAA+AGG | - | chr1_4:53538830-53538849 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTATGTTGTTTGT+TGG | - | chr1_4:53538856-53538875 | None:intergenic | 20.0% |
| ! | CGATCAAAATTCAAAAATCT+GGG | - | chr1_4:53530047-53530066 | None:intergenic | 25.0% |
| ! | TCGATCAAAATTCAAAAATC+TGG | - | chr1_4:53530048-53530067 | None:intergenic | 25.0% |
| !!! | GATTTTTGAATTTTGATCGA+TGG | + | chr1_4:53530048-53530067 | Msa0169990:exon | 25.0% |
| !!! | TACGAATATTGATTCTTCTT+CGG | - | chr1_4:53530113-53530132 | None:intergenic | 25.0% |
| ! | AGAAGAATCAATATTCGTAA+AGG | + | chr1_4:53530114-53530133 | Msa0169990:CDS | 25.0% |
| ! | GAAGAATCAATATTCGTAAA+GGG | + | chr1_4:53530115-53530134 | Msa0169990:CDS | 25.0% |
| ! | TGAAGATAGATTAGTGAAAA+GGG | - | chr1_4:53530225-53530244 | None:intergenic | 25.0% |
| ! | TTGAAGATAGATTAGTGAAA+AGG | - | chr1_4:53530226-53530245 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGATTTTGATTTG+TGG | + | chr1_4:53530243-53530262 | Msa0169990:intron | 25.0% |
| !!! | AGTTTTGATTTTGATTTGTG+GGG | + | chr1_4:53530245-53530264 | Msa0169990:intron | 25.0% |
| ! | TACGAAAAATAACAAACAGT+TGG | - | chr1_4:53530439-53530458 | None:intergenic | 25.0% |
| ! | TGATCCAGATATCTATTTAA+GGG | - | chr1_4:53530679-53530698 | None:intergenic | 25.0% |
| ! | TTGATCCAGATATCTATTTA+AGG | - | chr1_4:53530680-53530699 | None:intergenic | 25.0% |
| ! | GAAAAACAAATACATTGGTA+AGG | - | chr1_4:53530985-53531004 | None:intergenic | 25.0% |
| ! | TCGAAGAAAAACAAATACAT+TGG | - | chr1_4:53530990-53531009 | None:intergenic | 25.0% |
| !! | GTTTCTCGATTTGTTTATTA+TGG | + | chr1_4:53531390-53531409 | Msa0169990:intron | 25.0% |
| ! | GTTTATTATGGTTATTGTCT+TGG | + | chr1_4:53531402-53531421 | Msa0169990:intron | 25.0% |
| ! | AATAGGAATGTAAGGTTTAA+TGG | + | chr1_4:53531456-53531475 | Msa0169990:intron | 25.0% |
| ! | AAGGTTTAATGGTGTAAAAT+TGG | + | chr1_4:53531467-53531486 | Msa0169990:intron | 25.0% |
| !! | TATGTGAAATGGTTTTTGAT+AGG | + | chr1_4:53531519-53531538 | Msa0169990:intron | 25.0% |
| ! | GAAATGAAACAATGATATAC+AGG | - | chr1_4:53531559-53531578 | None:intergenic | 25.0% |
| ! | AATTGAATACAACAACAAAC+TGG | - | chr1_4:53531581-53531600 | None:intergenic | 25.0% |
| ! | AAACATAGCTAGAACTAAAT+TGG | + | chr1_4:53531721-53531740 | Msa0169990:intron | 25.0% |
| ! | AACATAGCTAGAACTAAATT+GGG | + | chr1_4:53531722-53531741 | Msa0169990:intron | 25.0% |
| ! | TCATGAAAATGTCAAATTTC+AGG | - | chr1_4:53531938-53531957 | None:intergenic | 25.0% |
| !! | AATAAGTTGGCTGTTATTTA+TGG | + | chr1_4:53532077-53532096 | Msa0169990:intron | 25.0% |
| ! | AGTGAGATGAAATTCAAAAA+AGG | - | chr1_4:53532242-53532261 | None:intergenic | 25.0% |
| ! | GTCTTAAACTTGAGTAAATA+TGG | + | chr1_4:53532272-53532291 | Msa0169990:intron | 25.0% |
| ! | CTTAAACTTGAGTAAATATG+GGG | + | chr1_4:53532274-53532293 | Msa0169990:intron | 25.0% |
| !! | GAATCAATATGCCTATTTTA+TGG | + | chr1_4:53532345-53532364 | Msa0169990:intron | 25.0% |
| ! | AACTTAAAATATGTCAATGG+AGG | + | chr1_4:53532375-53532394 | Msa0169990:intron | 25.0% |
| ! | GTTAATATCAACTACTGTAA+TGG | + | chr1_4:53532463-53532482 | Msa0169990:intron | 25.0% |
| ! | GATGTTCAAAACTAAATAGA+AGG | - | chr1_4:53532872-53532891 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAACATCATAGT+TGG | + | chr1_4:53532877-53532896 | Msa0169990:intron | 25.0% |
| !!! | GTATAAAAGGGTTATTTCTT+TGG | - | chr1_4:53532949-53532968 | None:intergenic | 25.0% |
| !! | AATTGGAGGTTGTTATTATA+GGG | - | chr1_4:53533106-53533125 | None:intergenic | 25.0% |
| !! | TAATTGGAGGTTGTTATTAT+AGG | - | chr1_4:53533107-53533126 | None:intergenic | 25.0% |
| ! | AAAGTTAGTTAGTTAATTGG+AGG | - | chr1_4:53533120-53533139 | None:intergenic | 25.0% |
| !!! | TGTTTTGGTAGTTAGAATAA+TGG | - | chr1_4:53533167-53533186 | None:intergenic | 25.0% |
| ! | TGAATCTCAAATCTATACAA+AGG | + | chr1_4:53533295-53533314 | Msa0169990:CDS | 25.0% |
| !! | ATACAGGTCAAAATTTTCAA+TGG | - | chr1_4:53533362-53533381 | None:intergenic | 25.0% |
| !!! | ATTGAAAATTTTGACCTGTA+TGG | + | chr1_4:53533361-53533380 | Msa0169990:intron | 25.0% |
| ! | TAAAACAACAAGGTAAAATG+AGG | - | chr1_4:53533503-53533522 | None:intergenic | 25.0% |
| !!! | AAAAGCATCATAAAACAACA+AGG | - | chr1_4:53533513-53533532 | None:intergenic | 25.0% |
| !!! | TGTTATTCTGTTTTAGTTTC+TGG | + | chr1_4:53533610-53533629 | Msa0169990:intron | 25.0% |
| !!! | GTTATTCTGTTTTAGTTTCT+GGG | + | chr1_4:53533611-53533630 | Msa0169990:intron | 25.0% |
| ! | TGTACAAAATTCACTTAAGT+TGG | + | chr1_4:53533943-53533962 | Msa0169990:intron | 25.0% |
| ! | TGCAAATCTAAAAACAATGT+CGG | + | chr1_4:53534113-53534132 | Msa0169990:intron | 25.0% |
| ! | CACACATATTAAATCCAAAA+AGG | + | chr1_4:53534467-53534486 | Msa0169990:intron | 25.0% |
| ! | ATAATACACAAGTCAAATCA+TGG | + | chr1_4:53534624-53534643 | Msa0169990:intron | 25.0% |
| ! | TACATATTGAAGGATCAAAA+AGG | + | chr1_4:53534799-53534818 | Msa0169990:intron | 25.0% |
| ! | AATTCAAATATTGTGTTCTC+AGG | + | chr1_4:53534926-53534945 | Msa0169990:intron | 25.0% |
| !!! | GTCCCTCTATTTTTAAAATA+TGG | + | chr1_4:53535376-53535395 | Msa0169990:intron | 25.0% |
| !!! | GCTCCATATTTTAAAAATAG+AGG | - | chr1_4:53535382-53535401 | None:intergenic | 25.0% |
| ! | GAGGGTGAAAAATATAAAAT+TGG | - | chr1_4:53535442-53535461 | None:intergenic | 25.0% |
| ! | AGCAAAAATAACCCTAAAAT+GGG | - | chr1_4:53535467-53535486 | None:intergenic | 25.0% |
| !! | TGAGATGAAAGATGAAATTT+TGG | + | chr1_4:53535593-53535612 | Msa0169990:intron | 25.0% |
| !!! | AGATGAAATTTTGGAGAAAA+AGG | + | chr1_4:53535602-53535621 | Msa0169990:intron | 25.0% |
| !!! | TATTTTAAAAGCTGGGTTTT+TGG | - | chr1_4:53535641-53535660 | None:intergenic | 25.0% |
| ! | AATCAATGCACCAAATTAAA+AGG | + | chr1_4:53535810-53535829 | Msa0169990:intron | 25.0% |
| !!! | TCTCTTTTTTTTTTGGTCAA+GGG | - | chr1_4:53535901-53535920 | None:intergenic | 25.0% |
| ! | TAAAAGATCCTTACAATTAC+GGG | - | chr1_4:53535924-53535943 | None:intergenic | 25.0% |
| ! | GTAAAAGATCCTTACAATTA+CGG | - | chr1_4:53535925-53535944 | None:intergenic | 25.0% |
| ! | GGTTTGAAGAAAATATTTGT+AGG | + | chr1_4:53536103-53536122 | Msa0169990:intron | 25.0% |
| ! | GAAAATATTTGTAGGATAGT+TGG | + | chr1_4:53536111-53536130 | Msa0169990:intron | 25.0% |
| ! | AAATATTGCAATGAAGGAAA+AGG | - | chr1_4:53536639-53536658 | None:intergenic | 25.0% |
| ! | TTGTGAACCAAATAATAATG+AGG | - | chr1_4:53536785-53536804 | None:intergenic | 25.0% |
| ! | GAAAAATCTCTTTCTTTGTA+TGG | + | chr1_4:53536956-53536975 | Msa0169990:intron | 25.0% |
| !!! | TCTGTAATTTGCTGTTTTTT+TGG | + | chr1_4:53536986-53537005 | Msa0169990:intron | 25.0% |
| ! | TGAGACTTTGTAAATATTGT+CGG | + | chr1_4:53537032-53537051 | Msa0169990:intron | 25.0% |
| ! | AATCACAATAGAAGATTAAC+AGG | + | chr1_4:53537201-53537220 | Msa0169990:intron | 25.0% |
| ! | TAGAAAAAAAATGTGTGCTT+TGG | - | chr1_4:53537294-53537313 | None:intergenic | 25.0% |
| !! | GAAGAGTAAAAAACTTTTCA+TGG | - | chr1_4:53537544-53537563 | None:intergenic | 25.0% |
| !!! | TTTCCTTATTTTATCAACCA+AGG | + | chr1_4:53537578-53537597 | Msa0169990:intron | 25.0% |
| !!! | TTCCTTATTTTATCAACCAA+GGG | + | chr1_4:53537579-53537598 | Msa0169990:intron | 25.0% |
| !!! | CAAACCTCTTTTAATTATCT+CGG | - | chr1_4:53537648-53537667 | None:intergenic | 25.0% |
| ! | TTTCATATGAGTTTATAGGT+TGG | - | chr1_4:53537732-53537751 | None:intergenic | 25.0% |
| !! | TCCTTTTAGATCTTATCTTA+GGG | - | chr1_4:53537767-53537786 | None:intergenic | 25.0% |
| !! | ATCCTTTTAGATCTTATCTT+AGG | - | chr1_4:53537768-53537787 | None:intergenic | 25.0% |
| ! | TCAAATAACATAATTTCGTG+AGG | - | chr1_4:53537891-53537910 | None:intergenic | 25.0% |
| !!! | ATTTTGATAATAAGGGTGAA+GGG | - | chr1_4:53538731-53538750 | None:intergenic | 25.0% |
| !!! | CTTGCTTCATTTTGATAATA+AGG | - | chr1_4:53538739-53538758 | None:intergenic | 25.0% |
| !! | TATTGCTACTTGTTAAAATG+TGG | - | chr1_4:53538771-53538790 | None:intergenic | 25.0% |
| TCAAAATTCAAAAATCTGGG+TGG | - | chr1_4:53530044-53530063 | None:intergenic | 30.0% | |
| !! | TTTGAATTTTGATCGATGGA+AGG | + | chr1_4:53530052-53530071 | Msa0169990:exon | 30.0% |
| !! | TTGAATTTTGATCGATGGAA+GGG | + | chr1_4:53530053-53530072 | Msa0169990:exon | 30.0% |
| AAAAATAACAAACAGTTGGC+AGG | - | chr1_4:53530435-53530454 | None:intergenic | 30.0% | |
| GTAATTATATCTGTCAGTGT+CGG | + | chr1_4:53530523-53530542 | Msa0169990:intron | 30.0% | |
| GTTATAGAATGTGGTATGAT+TGG | + | chr1_4:53530571-53530590 | Msa0169990:intron | 30.0% | |
| GTGCAGTAAACATATAGTAA+AGG | + | chr1_4:53530605-53530624 | Msa0169990:intron | 30.0% | |
| ATAGTAAAGGCTTATCAAAC+CGG | + | chr1_4:53530618-53530637 | Msa0169990:intron | 30.0% | |
| GATCCAGATATCTATTTAAG+GGG | - | chr1_4:53530678-53530697 | None:intergenic | 30.0% | |
| !!! | ATTGGTAAGGTTTTAAACAG+AGG | - | chr1_4:53530972-53530991 | None:intergenic | 30.0% |
| !! | ATTTGTTTTTCTTCGATGTG+AGG | + | chr1_4:53530994-53531013 | Msa0169990:intron | 30.0% |
| !! | TTTGTTTTTCTTCGATGTGA+GGG | + | chr1_4:53530995-53531014 | Msa0169990:intron | 30.0% |
| !! | TTTTGGGCTAGATATTTCAT+CGG | + | chr1_4:53531022-53531041 | Msa0169990:intron | 30.0% |
| GAAAACTACTGCAGAAATAT+TGG | + | chr1_4:53531255-53531274 | Msa0169990:CDS | 30.0% | |
| AGAAATATTGGACTTTCTCA+TGG | + | chr1_4:53531267-53531286 | Msa0169990:CDS | 30.0% | |
| !! | GGATGATAATGGTAACAAAT+AGG | + | chr1_4:53531439-53531458 | Msa0169990:intron | 30.0% |
| TGGTAACAAATAGGAATGTA+AGG | + | chr1_4:53531448-53531467 | Msa0169990:intron | 30.0% | |
| GTGTAAAATTGGAGTTCAAA+GGG | + | chr1_4:53531478-53531497 | Msa0169990:intron | 30.0% | |
| ! | ATGGTTTTTGATAGGTGAAA+TGG | + | chr1_4:53531527-53531546 | Msa0169990:intron | 30.0% |
| GTGTTCATATTCTACCATTT+AGG | + | chr1_4:53531773-53531792 | Msa0169990:intron | 30.0% | |
| AAGGCATGTGATATACAAAA+GGG | - | chr1_4:53532022-53532041 | None:intergenic | 30.0% | |
| GAAATGAGACACAAATAAGT+TGG | + | chr1_4:53532064-53532083 | Msa0169990:intron | 30.0% | |
| TATCAACAGATCATAACAGT+TGG | + | chr1_4:53532110-53532129 | Msa0169990:intron | 30.0% | |
| !! | GAAGTTGTCTTTTTCATCTT+TGG | - | chr1_4:53532171-53532190 | None:intergenic | 30.0% |
| ! | GTAGTTGATATTAACGATGT+GGG | - | chr1_4:53532458-53532477 | None:intergenic | 30.0% |
| ! | AGTAGTTGATATTAACGATG+TGG | - | chr1_4:53532459-53532478 | None:intergenic | 30.0% |
| ! | TTTTCAAATCCTGCTTGATT+TGG | + | chr1_4:53532812-53532831 | Msa0169990:intron | 30.0% |
| TTCAAAACTAAATAGAAGGG+AGG | - | chr1_4:53532868-53532887 | None:intergenic | 30.0% | |
| !! | TTCTTTGGAATCGAATACTT+GGG | - | chr1_4:53532934-53532953 | None:intergenic | 30.0% |
| !! | TTTCTTTGGAATCGAATACT+TGG | - | chr1_4:53532935-53532954 | None:intergenic | 30.0% |
| AGTAGTGACTCTATTATGAA+GGG | - | chr1_4:53533007-53533026 | None:intergenic | 30.0% | |
| TAGTAGTGACTCTATTATGA+AGG | - | chr1_4:53533008-53533027 | None:intergenic | 30.0% | |
| GGAAGAAGTTGTCATAAAAA+CGG | + | chr1_4:53533193-53533212 | Msa0169990:intron | 30.0% | |
| AGGTAAAATGAGGTCAATAT+TGG | - | chr1_4:53533493-53533512 | None:intergenic | 30.0% | |
| !!! | CAAAACTCTCAGTTTTTTCT+GGG | - | chr1_4:53533730-53533749 | None:intergenic | 30.0% |
| !!! | TCAAAACTCTCAGTTTTTTC+TGG | - | chr1_4:53533731-53533750 | None:intergenic | 30.0% |
| ! | GAACTAGTAATACACTTTTG+AGG | - | chr1_4:53533788-53533807 | None:intergenic | 30.0% |
| TAGACTCACATGACAAATTA+GGG | + | chr1_4:53533853-53533872 | Msa0169990:intron | 30.0% | |
| TTGTACAAATGTGAAATCCA+TGG | - | chr1_4:53533930-53533949 | None:intergenic | 30.0% | |
| TGATATCTCTGTCTCATAAT+TGG | + | chr1_4:53533984-53534003 | Msa0169990:intron | 30.0% | |
| !! | AAGTGAAACCATAGTTCTAA+GGG | - | chr1_4:53534028-53534047 | None:intergenic | 30.0% |
| ! | AAAGTGAAACCATAGTTCTA+AGG | - | chr1_4:53534029-53534048 | None:intergenic | 30.0% |
| TATTACCATGCTTGATTGTA+GGG | - | chr1_4:53534078-53534097 | None:intergenic | 30.0% | |
| AATCTAAAAACAATGTCGGT+AGG | + | chr1_4:53534117-53534136 | Msa0169990:intron | 30.0% | |
| ! | TCTGTTATTATCAAAGCGTT+GGG | - | chr1_4:53534318-53534337 | None:intergenic | 30.0% |
| ! | TATTTTGCATGACTGTTCAA+AGG | - | chr1_4:53534344-53534363 | None:intergenic | 30.0% |
| ACAAACACGTCATAAAGATA+AGG | - | chr1_4:53534446-53534465 | None:intergenic | 30.0% | |
| ! | TTGCGTGATAACGTAAAATT+TGG | + | chr1_4:53534596-53534615 | Msa0169990:intron | 30.0% |
| GAATCTCATAAGTTGTTGAA+CGG | - | chr1_4:53534651-53534670 | None:intergenic | 30.0% | |
| TTTGCAATTCTTCTTGTGTT+TGG | - | chr1_4:53534750-53534769 | None:intergenic | 30.0% | |
| AAAATGTCTGATGAATGCAA+AGG | + | chr1_4:53534828-53534847 | Msa0169990:intron | 30.0% | |
| AATGCTATCATTGTGCTAAA+AGG | + | chr1_4:53535028-53535047 | Msa0169990:CDS | 30.0% | |
| TAAAGATGGAATTGTCTATC+AGG | + | chr1_4:53535102-53535121 | Msa0169990:CDS | 30.0% | |
| TAACTTGGAGCATATATACA+AGG | - | chr1_4:53535163-53535182 | None:intergenic | 30.0% | |
| CAAAGTCATATGTAATTCCT+TGG | - | chr1_4:53535309-53535328 | None:intergenic | 30.0% | |
| CAGCAAAAATAACCCTAAAA+TGG | - | chr1_4:53535468-53535487 | None:intergenic | 30.0% | |
| TTAATGTGACCATATAAGCT+CGG | - | chr1_4:53535517-53535536 | None:intergenic | 30.0% | |
| TTCATCTTTCATCTCATTCT+TGG | - | chr1_4:53535589-53535608 | None:intergenic | 30.0% | |
| !!! | AAACCCAGCTTTTAAAATAG+TGG | + | chr1_4:53535642-53535661 | Msa0169990:intron | 30.0% |
| !!! | AACCCAGCTTTTAAAATAGT+GGG | + | chr1_4:53535643-53535662 | Msa0169990:intron | 30.0% |
| !!! | CTAATTTTTTGTGATTTGGC+AGG | - | chr1_4:53535761-53535780 | None:intergenic | 30.0% |
| !!! | GTGGCTAATTTTTTGTGATT+TGG | - | chr1_4:53535765-53535784 | None:intergenic | 30.0% |
| !!! | CTCTTTTTTTTTTGGTCAAG+GGG | - | chr1_4:53535900-53535919 | None:intergenic | 30.0% |
| !!! | GTCTCTTTTTTTTTTGGTCA+AGG | - | chr1_4:53535902-53535921 | None:intergenic | 30.0% |
| !!! | TTACGGGTCTCTTTTTTTTT+TGG | - | chr1_4:53535908-53535927 | None:intergenic | 30.0% |
| ! | ATTTTACTAAATGTCGGTGA+CGG | + | chr1_4:53536057-53536076 | Msa0169990:intron | 30.0% |
| ! | TTCTCTTTTGGTATGACAAA+TGG | + | chr1_4:53536148-53536167 | Msa0169990:intron | 30.0% |
| ! | TCTCTTTTGGTATGACAAAT+GGG | + | chr1_4:53536149-53536168 | Msa0169990:intron | 30.0% |
| AATAATATTGTGTTGCAGGA+TGG | + | chr1_4:53536340-53536359 | Msa0169990:intron | 30.0% | |
| TGCATCAAATTATCTTTCGT+AGG | - | chr1_4:53536547-53536566 | None:intergenic | 30.0% | |
| AAAGATAATTTGATGCATCG+TGG | + | chr1_4:53536550-53536569 | Msa0169990:intron | 30.0% | |
| CTTTCGAAATATTGCAATGA+AGG | - | chr1_4:53536645-53536664 | None:intergenic | 30.0% | |
| !! | TTTAACTCCGTTTTCTAAGA+TGG | + | chr1_4:53536732-53536751 | Msa0169990:intron | 30.0% |
| ! | TTATTTGGTTCACAACTGTT+TGG | + | chr1_4:53536790-53536809 | Msa0169990:intron | 30.0% |
| ! | TATTTGGTTCACAACTGTTT+GGG | + | chr1_4:53536791-53536810 | Msa0169990:intron | 30.0% |
| ATAAACAGAGTGGATGATTA+GGG | - | chr1_4:53537350-53537369 | None:intergenic | 30.0% | |
| AAGTTTGTCGTAGAATTCAT+AGG | - | chr1_4:53537398-53537417 | None:intergenic | 30.0% | |
| TTAAGTCATTCTTATGAGGT+GGG | - | chr1_4:53537425-53537444 | None:intergenic | 30.0% | |
| TTTAAGTCATTCTTATGAGG+TGG | - | chr1_4:53537426-53537445 | None:intergenic | 30.0% | |
| ACATCTAGAAGCCTTAAATA+AGG | + | chr1_4:53537470-53537489 | Msa0169990:intron | 30.0% | |
| CATCTAGAAGCCTTAAATAA+GGG | + | chr1_4:53537471-53537490 | Msa0169990:intron | 30.0% | |
| !!! | TCGCTTTTTTCCCTTATTTA+AGG | - | chr1_4:53537484-53537503 | None:intergenic | 30.0% |
| !!! | TCCTTATTTTATCAACCAAG+GGG | + | chr1_4:53537580-53537599 | Msa0169990:intron | 30.0% |
| ATTATCTCGGTCTTCTTATT+GGG | - | chr1_4:53537635-53537654 | None:intergenic | 30.0% | |
| AATTATCTCGGTCTTCTTAT+TGG | - | chr1_4:53537636-53537655 | None:intergenic | 30.0% | |
| AAGACCGAGATAATTAAAAG+AGG | + | chr1_4:53537641-53537660 | Msa0169990:intron | 30.0% | |
| ACCCTAAGATAAGATCTAAA+AGG | + | chr1_4:53537763-53537782 | Msa0169990:intron | 30.0% | |
| ! | TTTATCTTGGATGAGAGTTT+TGG | - | chr1_4:53537821-53537840 | None:intergenic | 30.0% |
| AAAAAAAAAATCTCCACCCT+AGG | + | chr1_4:53537865-53537884 | Msa0169990:intron | 30.0% | |
| TATTAAAATCGGTGGTACTT+TGG | - | chr1_4:53537966-53537985 | None:intergenic | 30.0% | |
| !!! | ACCACCGATTTTAATAAAGT+TGG | + | chr1_4:53537970-53537989 | Msa0169990:intron | 30.0% |
| ACCAACTTTATTAAAATCGG+TGG | - | chr1_4:53537974-53537993 | None:intergenic | 30.0% | |
| AAATTATTCAATGTGGGGAT+GGG | - | chr1_4:53538182-53538201 | None:intergenic | 30.0% | |
| AAAATTATTCAATGTGGGGA+TGG | - | chr1_4:53538183-53538202 | None:intergenic | 30.0% | |
| TGCATTACAACATTTCTCTA+GGG | - | chr1_4:53538237-53538256 | None:intergenic | 30.0% | |
| ATGCATTACAACATTTCTCT+AGG | - | chr1_4:53538238-53538257 | None:intergenic | 30.0% | |
| TGTTAAAGTGATCATATTGC+AGG | - | chr1_4:53538264-53538283 | None:intergenic | 30.0% | |
| AAAGGAGCAACTAAATCAAT+CGG | - | chr1_4:53538296-53538315 | None:intergenic | 30.0% | |
| !! | TTTTGATAATAAGGGTGAAG+GGG | - | chr1_4:53538730-53538749 | None:intergenic | 30.0% |
| !! | CATTTTGATAATAAGGGTGA+AGG | - | chr1_4:53538732-53538751 | None:intergenic | 30.0% |
| !!! | TTAGGTTTTTCAGGGTAAAA+AGG | - | chr1_4:53538902-53538921 | None:intergenic | 30.0% |
| !! | TTGAAGTGTTAGGTTTTTCA+GGG | - | chr1_4:53538910-53538929 | None:intergenic | 30.0% |
| ! | CAATTGAATTTAGTTCAGAG+TGG | - | chr1_4:53538963-53538982 | None:intergenic | 30.0% |
| TTAGAAAACTGAGAAGTTTG+AGG | + | chr1_4:53539054-53539073 | Msa0169990:intron | 30.0% | |
| ! | AATCCTCAAAAGTGTATTAC+TGG | + | chr1_4:53539105-53539124 | Msa0169990:CDS | 30.0% |
| ! | CAATATTCGTAAAGGGTACA+TGG | + | chr1_4:53530122-53530141 | Msa0169990:CDS | 35.0% |
| !! | CACCTTTTGATTAGAAGTGT+TGG | + | chr1_4:53530547-53530566 | Msa0169990:intron | 35.0% |
| CACCAACACTTCTAATCAAA+AGG | - | chr1_4:53530552-53530571 | None:intergenic | 35.0% | |
| !! | AGTGTTGGTGTTATAGAATG+TGG | + | chr1_4:53530562-53530581 | Msa0169990:intron | 35.0% |
| CAACCCCTTAAATAGATATC+TGG | + | chr1_4:53530672-53530691 | Msa0169990:intron | 35.0% | |
| TTAAGTAGTGCTTGCGTTAA+TGG | + | chr1_4:53530854-53530873 | Msa0169990:intron | 35.0% | |
| ! | TCAAATATGGTTGATGTGTG+TGG | + | chr1_4:53530895-53530914 | Msa0169990:intron | 35.0% |
| !!! | TTCGATGTGAGGGTTTTTTT+TGG | + | chr1_4:53531005-53531024 | Msa0169990:intron | 35.0% |
| !!! | TCGATGTGAGGGTTTTTTTT+GGG | + | chr1_4:53531006-53531025 | Msa0169990:intron | 35.0% |
| CACCATTGAATATTCAGTCA+CGG | + | chr1_4:53531110-53531129 | Msa0169990:intron | 35.0% | |
| CATTAATAGCCAGTAGTGAA+AGG | - | chr1_4:53531143-53531162 | None:intergenic | 35.0% | |
| ! | GCAGTAGTTTTCTTACAATC+TGG | - | chr1_4:53531247-53531266 | None:intergenic | 35.0% |
| TTCTCATGGATGCAAACATA+AGG | + | chr1_4:53531281-53531300 | Msa0169990:CDS | 35.0% | |
| AAACACGAAACATACAAGTG+AGG | - | chr1_4:53531374-53531393 | None:intergenic | 35.0% | |
| GGTGTAAAATTGGAGTTCAA+AGG | + | chr1_4:53531477-53531496 | Msa0169990:intron | 35.0% | |
| TAAAATTGGAGTTCAAAGGG+AGG | + | chr1_4:53531481-53531500 | Msa0169990:intron | 35.0% | |
| AACATAACCTAATGCTAAGC+TGG | + | chr1_4:53531823-53531842 | Msa0169990:intron | 35.0% | |
| ACTATCAAGGATCTACTAAG+TGG | + | chr1_4:53531968-53531987 | Msa0169990:intron | 35.0% | |
| CAAGGCATGTGATATACAAA+AGG | - | chr1_4:53532023-53532042 | None:intergenic | 35.0% | |
| TGTATGAATATGACCAGACA+AGG | - | chr1_4:53532041-53532060 | None:intergenic | 35.0% | |
| ! | ACATTTTGTGGCTTTCTATG+AGG | - | chr1_4:53532197-53532216 | None:intergenic | 35.0% |
| ATATGGCAATAAGGAACATG+TGG | - | chr1_4:53532310-53532329 | None:intergenic | 35.0% | |
| TGTTCCTTATTGCCATATGA+TGG | + | chr1_4:53532312-53532331 | Msa0169990:intron | 35.0% | |
| AGAACCATCATATGGCAATA+AGG | - | chr1_4:53532319-53532338 | None:intergenic | 35.0% | |
| !! | AATATGTCAATGGAGGTGTT+TGG | + | chr1_4:53532382-53532401 | Msa0169990:intron | 35.0% |
| TCAAAGATTTACCTGTTTCC+AGG | - | chr1_4:53532608-53532627 | None:intergenic | 35.0% | |
| AAACAGGTAAATCTTTGAGC+TGG | + | chr1_4:53532610-53532629 | Msa0169990:intron | 35.0% | |
| AACAGGTAAATCTTTGAGCT+GGG | + | chr1_4:53532611-53532630 | Msa0169990:intron | 35.0% | |
| ! | TTTTCGTATGAACGAGATCA+GGG | + | chr1_4:53532771-53532790 | Msa0169990:intron | 35.0% |
| AAACTAAATAGAAGGGAGGA+GGG | - | chr1_4:53532864-53532883 | None:intergenic | 35.0% | |
| AAAACTAAATAGAAGGGAGG+AGG | - | chr1_4:53532865-53532884 | None:intergenic | 35.0% | |
| TATTATGAAGGGTAAACCCT+CGG | - | chr1_4:53532996-53533015 | None:intergenic | 35.0% | |
| TTTATGACAACTTCTTCCTG+TGG | - | chr1_4:53533191-53533210 | None:intergenic | 35.0% | |
| TGAGAGAATAGCCAATGAAA+GGG | + | chr1_4:53533265-53533284 | Msa0169990:CDS | 35.0% | |
| TTCAAATTCCACCCTTTCAT+TGG | - | chr1_4:53533279-53533298 | None:intergenic | 35.0% | |
| ! | TTTTGACCTGTATGGTTTAC+CGG | + | chr1_4:53533369-53533388 | Msa0169990:intron | 35.0% |
| CAGCTGTCAAAACAAGATAA+CGG | + | chr1_4:53533677-53533696 | Msa0169990:CDS | 35.0% | |
| ! | GTGTATTACTAGTTCTTCGA+AGG | + | chr1_4:53533793-53533812 | Msa0169990:CDS | 35.0% |
| CTAGACTCACATGACAAATT+AGG | + | chr1_4:53533852-53533871 | Msa0169990:intron | 35.0% | |
| AGACTCACATGACAAATTAG+GGG | + | chr1_4:53533854-53533873 | Msa0169990:intron | 35.0% | |
| !!! | CAAGTGTTTTGTTTTCACCA+TGG | + | chr1_4:53533910-53533929 | Msa0169990:intron | 35.0% |
| ATGAGACAGAGATATCACAA+GGG | - | chr1_4:53533981-53534000 | None:intergenic | 35.0% | |
| TATGAGACAGAGATATCACA+AGG | - | chr1_4:53533982-53534001 | None:intergenic | 35.0% | |
| TATCTCTGTCTCATAATTGG+TGG | + | chr1_4:53533987-53534006 | Msa0169990:intron | 35.0% | |
| TAAATGCACCCTTAGAACTA+TGG | + | chr1_4:53534017-53534036 | Msa0169990:intron | 35.0% | |
| ATTACCATGCTTGATTGTAG+GGG | - | chr1_4:53534077-53534096 | None:intergenic | 35.0% | |
| GTATTACCATGCTTGATTGT+AGG | - | chr1_4:53534079-53534098 | None:intergenic | 35.0% | |
| CTCTGTTATTATCAAAGCGT+TGG | - | chr1_4:53534319-53534338 | None:intergenic | 35.0% | |
| CTTGACAATATGTTCTCACT+AGG | - | chr1_4:53534504-53534523 | None:intergenic | 35.0% | |
| GACACTTTCTATCCAATTGT+TGG | - | chr1_4:53535130-53535149 | None:intergenic | 35.0% | |
| !! | CAATTGGATAGAAAGTGTCA+TGG | + | chr1_4:53535131-53535150 | Msa0169990:intron | 35.0% |
| ! | GTTTTACATGTTCTTTGCCA+AGG | + | chr1_4:53535289-53535308 | Msa0169990:intron | 35.0% |
| ATAACCCTAAAATGGGAAGA+GGG | - | chr1_4:53535460-53535479 | None:intergenic | 35.0% | |
| AATAACCCTAAAATGGGAAG+AGG | - | chr1_4:53535461-53535480 | None:intergenic | 35.0% | |
| !!! | TTAAAAGCTGGGTTTTTGGT+CGG | - | chr1_4:53535637-53535656 | None:intergenic | 35.0% |
| !! | GTCCCACTATTTTAAAAGCT+GGG | - | chr1_4:53535648-53535667 | None:intergenic | 35.0% |
| !! | AGTCCCACTATTTTAAAAGC+TGG | - | chr1_4:53535649-53535668 | None:intergenic | 35.0% |
| AAAAGAGACCCGTAATTGTA+AGG | + | chr1_4:53535913-53535932 | Msa0169990:intron | 35.0% | |
| ! | TTTTACTAAATGTCGGTGAC+GGG | + | chr1_4:53536058-53536077 | Msa0169990:intron | 35.0% |
| !! | ATTTGTAGGATAGTTGGTGA+TGG | + | chr1_4:53536117-53536136 | Msa0169990:intron | 35.0% |
| !! | TTTGTAGGATAGTTGGTGAT+GGG | + | chr1_4:53536118-53536137 | Msa0169990:intron | 35.0% |
| ! | TTTTGGTATGACAAATGGGT+TGG | + | chr1_4:53536153-53536172 | Msa0169990:intron | 35.0% |
| ! | TTTGGTATGACAAATGGGTT+GGG | + | chr1_4:53536154-53536173 | Msa0169990:intron | 35.0% |
| GCAATATTTCGAAAGATCTC+TGG | + | chr1_4:53536650-53536669 | Msa0169990:intron | 35.0% | |
| GAGGTATAATGACTAAATCG+AGG | - | chr1_4:53536766-53536785 | None:intergenic | 35.0% | |
| TTTGGAAGGAAAGAAACAAC+AGG | + | chr1_4:53536817-53536836 | Msa0169990:intron | 35.0% | |
| TTTATGGTTGAAAGCTAAGC+AGG | + | chr1_4:53536902-53536921 | Msa0169990:intron | 35.0% | |
| TTATTTATAGCTACCACGAC+TGG | + | chr1_4:53536931-53536950 | Msa0169990:intron | 35.0% | |
| !! | GAGAGTAGTTTTTAGGCTTT+AGG | - | chr1_4:53537233-53537252 | None:intergenic | 35.0% |
| TAAACAGAGTGGATGATTAG+GGG | - | chr1_4:53537349-53537368 | None:intergenic | 35.0% | |
| GATAAACAGAGTGGATGATT+AGG | - | chr1_4:53537351-53537370 | None:intergenic | 35.0% | |
| !! | ACTTTTCATGGGTTGTCATT+TGG | - | chr1_4:53537532-53537551 | None:intergenic | 35.0% |
| !! | ACCCCTTGGTTGATAAAATA+AGG | - | chr1_4:53537584-53537603 | None:intergenic | 35.0% |
| TTATCTCGGTCTTCTTATTG+GGG | - | chr1_4:53537634-53537653 | None:intergenic | 35.0% | |
| ! | TTTATAGGTTGGAGTCAACA+TGG | - | chr1_4:53537721-53537740 | None:intergenic | 35.0% |
| TCTCCTTCCTACTAATAACT+AGG | + | chr1_4:53538003-53538022 | Msa0169990:intron | 35.0% | |
| ATGCCTAGTTATTAGTAGGA+AGG | - | chr1_4:53538009-53538028 | None:intergenic | 35.0% | |
| TTCCTACTAATAACTAGGCA+TGG | + | chr1_4:53538008-53538027 | Msa0169990:intron | 35.0% | |
| TAATAACTAGGCATGGCAAT+GGG | + | chr1_4:53538015-53538034 | Msa0169990:intron | 35.0% | |
| ACGAGTACGTATATGAGAAT+CGG | - | chr1_4:53538080-53538099 | None:intergenic | 35.0% | |
| AATTATTCAATGTGGGGATG+GGG | - | chr1_4:53538181-53538200 | None:intergenic | 35.0% | |
| GCATTACAACATTTCTCTAG+GGG | - | chr1_4:53538236-53538255 | None:intergenic | 35.0% | |
| ! | TTTTCCCCGATTTCAAAACA+CGG | - | chr1_4:53538463-53538482 | None:intergenic | 35.0% |
| !!! | CAATTTTTTTTATGGGGCGA+TGG | - | chr1_4:53538575-53538594 | None:intergenic | 35.0% |
| AAATAATGTGTAGCGTGTAG+TGG | - | chr1_4:53538645-53538664 | None:intergenic | 35.0% | |
| !!! | TTTTGATGCTTTTGAGTTGG+AGG | - | chr1_4:53538704-53538723 | None:intergenic | 35.0% |
| !!! | TGGTTTTGATGCTTTTGAGT+TGG | - | chr1_4:53538707-53538726 | None:intergenic | 35.0% |
| ! | CTACTTGTTAAAATGTGGCT+AGG | - | chr1_4:53538766-53538785 | None:intergenic | 35.0% |
| AACGAATGGCACTTGAATTA+TGG | - | chr1_4:53538800-53538819 | None:intergenic | 35.0% | |
| !! | GTTGAAGTGTTAGGTTTTTC+AGG | - | chr1_4:53538911-53538930 | None:intergenic | 35.0% |
| ACTTCAACATGCAATGGTAT+AGG | + | chr1_4:53538923-53538942 | Msa0169990:intron | 35.0% | |
| ! | TTGAATTTAGTTCAGAGTGG+AGG | - | chr1_4:53538960-53538979 | None:intergenic | 35.0% |
| TGTGGACTTCAATTCTTCAA+AGG | - | chr1_4:53538987-53539006 | None:intergenic | 35.0% | |
| ! | TGCTTGCATTGTTATTGTTG+TGG | - | chr1_4:53539005-53539024 | None:intergenic | 35.0% |
| TTTGAGGAAGAAAGTGATGA+TGG | + | chr1_4:53539070-53539089 | Msa0169990:CDS | 35.0% | |
| ! | TAGCCAGTAATACACTTTTG+AGG | - | chr1_4:53539111-53539130 | None:intergenic | 35.0% |
| !!! | ATTACTGGCTAGTTTTTCGA+AGG | + | chr1_4:53539120-53539139 | Msa0169990:CDS | 35.0% |
| GAATTGTCTGAGCGGTATTT+GGG | + | chr1_4:53530348-53530367 | Msa0169990:CDS | 40.0% | |
| AATTGTCTGAGCGGTATTTG+GGG | + | chr1_4:53530349-53530368 | Msa0169990:CDS | 40.0% | |
| ! | GTTTATGCATTTGCTGATGC+TGG | + | chr1_4:53530390-53530409 | Msa0169990:intron | 40.0% |
| TGCTTGAAAGGTCTTCTGTT+TGG | + | chr1_4:53530643-53530662 | Msa0169990:intron | 40.0% | |
| CTACTTAAACCGTGGGTATT+GGG | - | chr1_4:53530842-53530861 | None:intergenic | 40.0% | |
| ACTACTTAAACCGTGGGTAT+TGG | - | chr1_4:53530843-53530862 | None:intergenic | 40.0% | |
| TTAATGGTTGCGGTTACGTT+GGG | + | chr1_4:53530870-53530889 | Msa0169990:intron | 40.0% | |
| CTCCGTGACTGAATATTCAA+TGG | - | chr1_4:53531115-53531134 | None:intergenic | 40.0% | |
| TGAATATTCAGTCACGGAGT+TGG | + | chr1_4:53531116-53531135 | Msa0169990:intron | 40.0% | |
| TGTCATGCTTGGGATGATAA+TGG | + | chr1_4:53531428-53531447 | Msa0169990:intron | 40.0% | |
| ! | CTTTTGACCAGCTTAGCATT+AGG | - | chr1_4:53531833-53531852 | None:intergenic | 40.0% |
| TGTATATCACATGCCTTGTC+TGG | + | chr1_4:53532025-53532044 | Msa0169990:intron | 40.0% | |
| ATTGCCATATGATGGTTCTC+AGG | + | chr1_4:53532320-53532339 | Msa0169990:intron | 40.0% | |
| ! | ACACATGGATTGAGATGATG+TGG | + | chr1_4:53532518-53532537 | Msa0169990:intron | 40.0% |
| ! | ATGGATTGAGATGATGTGGA+TGG | + | chr1_4:53532522-53532541 | Msa0169990:intron | 40.0% |
| TGGATTGAGATGATGTGGAT+GGG | + | chr1_4:53532523-53532542 | Msa0169990:intron | 40.0% | |
| ACAGGTAAATCTTTGAGCTG+GGG | + | chr1_4:53532612-53532631 | Msa0169990:intron | 40.0% | |
| ! | CTTTTCGTATGAACGAGATC+AGG | + | chr1_4:53532770-53532789 | Msa0169990:intron | 40.0% |
| CTGACTATTCCAAATCAAGC+AGG | - | chr1_4:53532824-53532843 | None:intergenic | 40.0% | |
| AAGAGAAATCTCTCTTCCGA+GGG | + | chr1_4:53532977-53532996 | Msa0169990:intron | 40.0% | |
| CTAACTACCAAAACATCCAC+AGG | + | chr1_4:53533172-53533191 | Msa0169990:intron | 40.0% | |
| ! | ACTTCTTCCTGTGGATGTTT+TGG | - | chr1_4:53533182-53533201 | None:intergenic | 40.0% |
| !! | ATTAGAAGCTGAGAAGTGCT+TGG | + | chr1_4:53533235-53533254 | Msa0169990:CDS | 40.0% |
| GTGAGAGAATAGCCAATGAA+AGG | + | chr1_4:53533264-53533283 | Msa0169990:CDS | 40.0% | |
| TTCAGCAATCTATCAGGAGT+AGG | - | chr1_4:53533438-53533457 | None:intergenic | 40.0% | |
| AGTTGCTTCAGCAATCTATC+AGG | - | chr1_4:53533444-53533463 | None:intergenic | 40.0% | |
| ! | ACTAGTTCTTCGAAGGATGT+TGG | + | chr1_4:53533800-53533819 | Msa0169990:CDS | 40.0% |
| TGAGACAGAGATATCACAAG+GGG | - | chr1_4:53533980-53533999 | None:intergenic | 40.0% | |
| GTCTGATGAATGCAAAGGTA+AGG | + | chr1_4:53534833-53534852 | Msa0169990:intron | 40.0% | |
| TGTTCTCAGGAAAGAGTTCA+TGG | + | chr1_4:53534939-53534958 | Msa0169990:intron | 40.0% | |
| ACAATGATAGCATTCACCGA+TGG | - | chr1_4:53535022-53535041 | None:intergenic | 40.0% | |
| !! | AGGGTTTGGGTTGATAAAGA+TGG | + | chr1_4:53535088-53535107 | Msa0169990:CDS | 40.0% |
| GTCTATCAGGTTCCAACAAT+TGG | + | chr1_4:53535115-53535134 | Msa0169990:intron | 40.0% | |
| ! | TTTCACCCTCTTCCCATTTT+AGG | + | chr1_4:53535452-53535471 | Msa0169990:intron | 40.0% |
| ! | TTCACCCTCTTCCCATTTTA+GGG | + | chr1_4:53535453-53535472 | Msa0169990:intron | 40.0% |
| GGGAGACTAAAAGAACAAAC+AGG | + | chr1_4:53535695-53535714 | Msa0169990:intron | 40.0% | |
| TTTACTAAATGTCGGTGACG+GGG | + | chr1_4:53536059-53536078 | Msa0169990:intron | 40.0% | |
| ! | ATGGGAGGGAAATTCTCTTT+TGG | + | chr1_4:53536136-53536155 | Msa0169990:intron | 40.0% |
| !! | TTGGTATGACAAATGGGTTG+GGG | + | chr1_4:53536155-53536174 | Msa0169990:intron | 40.0% |
| GATGTTAAGGTGGAGCTTAT+GGG | + | chr1_4:53536231-53536250 | Msa0169990:intron | 40.0% | |
| ATGTTAAGGTGGAGCTTATG+GGG | + | chr1_4:53536232-53536251 | Msa0169990:intron | 40.0% | |
| AGACTCTTATTGACGACGTT+TGG | + | chr1_4:53536461-53536480 | Msa0169990:intron | 40.0% | |
| GCACAAGACAATTCCTTCAA+AGG | + | chr1_4:53536483-53536502 | Msa0169990:intron | 40.0% | |
| ! | TTTGATGCATCGTGGCATTT+TGG | + | chr1_4:53536558-53536577 | Msa0169990:intron | 40.0% |
| TCAAATGACACAGCTTGTGT+GGG | + | chr1_4:53536583-53536602 | Msa0169990:intron | 40.0% | |
| !! | GAAAAGGTGTTGTGCTGTTT+CGG | - | chr1_4:53536623-53536642 | None:intergenic | 40.0% |
| TTCGAAAGATCTCTGGTATC+AGG | + | chr1_4:53536657-53536676 | Msa0169990:intron | 40.0% | |
| AAGATCTCTGGTATCAGGTT+TGG | + | chr1_4:53536662-53536681 | Msa0169990:intron | 40.0% | |
| ! | TATCAGGTTTGGAACTGGTT+AGG | + | chr1_4:53536673-53536692 | Msa0169990:intron | 40.0% |
| !!! | AACTCCGTTTTCTAAGATGG+CGG | + | chr1_4:53536735-53536754 | Msa0169990:intron | 40.0% |
| TCACAACTGTTTGGGTGATT+TGG | + | chr1_4:53536799-53536818 | Msa0169990:intron | 40.0% | |
| ! | AACTGTTTGGGTGATTTGGA+AGG | + | chr1_4:53536803-53536822 | Msa0169990:intron | 40.0% |
| AAGGTGTAGAAACTGTCTGT+TGG | - | chr1_4:53536848-53536867 | None:intergenic | 40.0% | |
| TCGAGGTAGAGATATGTAGT+TGG | - | chr1_4:53537161-53537180 | None:intergenic | 40.0% | |
| TATCTCGGTCTTCTTATTGG+GGG | - | chr1_4:53537633-53537652 | None:intergenic | 40.0% | |
| ACATAATTTCGTGAGGCCTA+GGG | - | chr1_4:53537884-53537903 | None:intergenic | 40.0% | |
| AACATAATTTCGTGAGGCCT+AGG | - | chr1_4:53537885-53537904 | None:intergenic | 40.0% | |
| TAAAATCGGTGGTACTTTGG+TGG | - | chr1_4:53537963-53537982 | None:intergenic | 40.0% | |
| TGCCATGCCTAGTTATTAGT+AGG | - | chr1_4:53538013-53538032 | None:intergenic | 40.0% | |
| CTAATAACTAGGCATGGCAA+TGG | + | chr1_4:53538014-53538033 | Msa0169990:intron | 40.0% | |
| AATAACTAGGCATGGCAATG+GGG | + | chr1_4:53538016-53538035 | Msa0169990:intron | 40.0% | |
| GTATATGAGAATCGGGTATG+GGG | - | chr1_4:53538072-53538091 | None:intergenic | 40.0% | |
| CGTATATGAGAATCGGGTAT+GGG | - | chr1_4:53538073-53538092 | None:intergenic | 40.0% | |
| ACGTATATGAGAATCGGGTA+TGG | - | chr1_4:53538074-53538093 | None:intergenic | 40.0% | |
| CGAGTACGTATATGAGAATC+GGG | - | chr1_4:53538079-53538098 | None:intergenic | 40.0% | |
| TTCAATTTCTCATCCCCGTT+GGG | - | chr1_4:53538116-53538135 | None:intergenic | 40.0% | |
| !! | TTTTGCATTTGGGACGAGTT+TGG | + | chr1_4:53538390-53538409 | Msa0169990:intron | 40.0% |
| ! | TTTGCATTTGGGACGAGTTT+GGG | + | chr1_4:53538391-53538410 | Msa0169990:intron | 40.0% |
| CGATTTCAAAACACGGGTAT+GGG | - | chr1_4:53538456-53538475 | None:intergenic | 40.0% | |
| !!! | CCATACCCGTGTTTTGAAAT+CGG | + | chr1_4:53538454-53538473 | Msa0169990:intron | 40.0% |
| !!! | CATACCCGTGTTTTGAAATC+GGG | + | chr1_4:53538455-53538474 | Msa0169990:intron | 40.0% |
| !!! | ATACCCGTGTTTTGAAATCG+GGG | + | chr1_4:53538456-53538475 | Msa0169990:intron | 40.0% |
| TTTCCCCGATTTCAAAACAC+GGG | - | chr1_4:53538462-53538481 | None:intergenic | 40.0% | |
| AAAACCCGTCAAATTGGGTT+TGG | + | chr1_4:53538499-53538518 | Msa0169990:intron | 40.0% | |
| TGAACCAAACCCAATTTGAC+GGG | - | chr1_4:53538506-53538525 | None:intergenic | 40.0% | |
| CTGAACCAAACCCAATTTGA+CGG | - | chr1_4:53538507-53538526 | None:intergenic | 40.0% | |
| TTAAAGGGAGCTTCAACGAA+TGG | - | chr1_4:53538814-53538833 | None:intergenic | 40.0% | |
| ! | CCATTGCATGTTGAAGTGTT+AGG | - | chr1_4:53538920-53538939 | None:intergenic | 40.0% |
| CCTAACACTTCAACATGCAA+TGG | + | chr1_4:53538917-53538936 | Msa0169990:intron | 40.0% | |
| !!! | GCTAGTTTTTCGAAGGATGT+TGG | + | chr1_4:53539127-53539146 | Msa0169990:CDS | 40.0% |
| AATTCCACGTACTCTTCCAC+CGG | - | chr1_4:53530333-53530352 | None:intergenic | 45.0% | |
| AGTACGTGGAATTGTCTGAG+CGG | + | chr1_4:53530340-53530359 | Msa0169990:CDS | 45.0% | |
| GGAATTGTCTGAGCGGTATT+TGG | + | chr1_4:53530347-53530366 | Msa0169990:CDS | 45.0% | |
| ! | TATTTGGGGTTTCGACAACC+TGG | + | chr1_4:53530363-53530382 | Msa0169990:CDS | 45.0% |
| ! | ATTTGGGGTTTCGACAACCT+GGG | + | chr1_4:53530364-53530383 | Msa0169990:CDS | 45.0% |
| GCAAATGCATAAACAGACCC+AGG | - | chr1_4:53530384-53530403 | None:intergenic | 45.0% | |
| ! | ATGCTGGTGATGCTCATAAG+AGG | + | chr1_4:53530406-53530425 | Msa0169990:intron | 45.0% |
| ! | TGCTGGTGATGCTCATAAGA+GGG | + | chr1_4:53530407-53530426 | Msa0169990:intron | 45.0% |
| ATCAAACCGGTGTGCTTGAA+AGG | + | chr1_4:53530631-53530650 | Msa0169990:intron | 45.0% | |
| AGAAGACCTTTCAAGCACAC+CGG | - | chr1_4:53530640-53530659 | None:intergenic | 45.0% | |
| TCACTTGAACCCAATACCCA+CGG | + | chr1_4:53530830-53530849 | Msa0169990:intron | 45.0% | |
| GCAAGCACTACTTAAACCGT+GGG | - | chr1_4:53530849-53530868 | None:intergenic | 45.0% | |
| AGTGCTTGCGTTAATGGTTG+CGG | + | chr1_4:53530860-53530879 | Msa0169990:intron | 45.0% | |
| GTTAATGGTTGCGGTTACGT+TGG | + | chr1_4:53530869-53530888 | Msa0169990:intron | 45.0% | |
| TAATGGTTGCGGTTACGTTG+GGG | + | chr1_4:53530871-53530890 | Msa0169990:intron | 45.0% | |
| GTTACGTTGGGGGTCAAATA+TGG | + | chr1_4:53530882-53530901 | Msa0169990:intron | 45.0% | |
| AGGTCTACAACTGCAACATC+AGG | - | chr1_4:53530952-53530971 | None:intergenic | 45.0% | |
| TGTGAATGTTGCAGTTGTCG+TGG | + | chr1_4:53531167-53531186 | Msa0169990:intron | 45.0% | |
| TTGTCGTGGACGTTTGAGAA+GGG | + | chr1_4:53531181-53531200 | Msa0169990:CDS | 45.0% | |
| GAATGACACTGCATTGGAGA+TGG | + | chr1_4:53531206-53531225 | Msa0169990:CDS | 45.0% | |
| TGTCTTGGAGATGTCATGCT+TGG | + | chr1_4:53531417-53531436 | Msa0169990:intron | 45.0% | |
| GTCTTGGAGATGTCATGCTT+GGG | + | chr1_4:53531418-53531437 | Msa0169990:intron | 45.0% | |
| ! | TCTACTAAGTGGCTTGTGAG+CGG | + | chr1_4:53531979-53531998 | Msa0169990:intron | 45.0% |
| TCCACCTGAGAACCATCATA+TGG | - | chr1_4:53532327-53532346 | None:intergenic | 45.0% | |
| AGTGCTCATAGTGCAACACA+TGG | + | chr1_4:53532503-53532522 | Msa0169990:intron | 45.0% | |
| CCTGCATTTCTGCAGAGATT+GGG | - | chr1_4:53532585-53532604 | None:intergenic | 45.0% | |
| TGGTTTCACACCTGGTAGAA+CGG | + | chr1_4:53532636-53532655 | Msa0169990:intron | 45.0% | |
| GAAGAGAAATCTCTCTTCCG+AGG | + | chr1_4:53532976-53532995 | Msa0169990:intron | 45.0% | |
| GAGAATAGCCAATGAAAGGG+TGG | + | chr1_4:53533268-53533287 | Msa0169990:CDS | 45.0% | |
| TATGGTTTACCGGCATAGCA+TGG | + | chr1_4:53533379-53533398 | Msa0169990:intron | 45.0% | |
| TGGCTTTCTACTGTGACACA+GGG | - | chr1_4:53533410-53533429 | None:intergenic | 45.0% | |
| ATGGCTTTCTACTGTGACAC+AGG | - | chr1_4:53533411-53533430 | None:intergenic | 45.0% | |
| GTGTCACAGTAGAAAGCCAT+TGG | + | chr1_4:53533411-53533430 | Msa0169990:intron | 45.0% | |
| TCTATCAGGAGTAGGACCAA+TGG | - | chr1_4:53533430-53533449 | None:intergenic | 45.0% | |
| CGGCAACAAATCTCTTCAAG+AGG | + | chr1_4:53533697-53533716 | Msa0169990:CDS | 45.0% | |
| !! | CATGTGAGTCTAGTTCTCCT+TGG | - | chr1_4:53533845-53533864 | None:intergenic | 45.0% |
| ACAACCCCTACAATCAAGCA+TGG | + | chr1_4:53534070-53534089 | Msa0169990:intron | 45.0% | |
| AAAGAGTTCATGGCCAGAGT+TGG | + | chr1_4:53534949-53534968 | Msa0169990:CDS | 45.0% | |
| TAGCAGAAGCTACGATTCAG+AGG | + | chr1_4:53534990-53535009 | Msa0169990:CDS | 45.0% | |
| AGCAGAAGCTACGATTCAGA+GGG | + | chr1_4:53534991-53535010 | Msa0169990:CDS | 45.0% | |
| GATTCAGAGGGAGAATCCAT+CGG | + | chr1_4:53535003-53535022 | Msa0169990:CDS | 45.0% | |
| AAACCCTAACCCTGTCAAAG+CGG | - | chr1_4:53535075-53535094 | None:intergenic | 45.0% | |
| CTTTGACAGGGTTAGGGTTT+GGG | + | chr1_4:53535075-53535094 | Msa0169990:CDS | 45.0% | |
| !! | TAGGATAGTTGGTGATGGGA+GGG | + | chr1_4:53536122-53536141 | Msa0169990:intron | 45.0% |
| TGGGGGAACTTTATCCTCAA+CGG | - | chr1_4:53536186-53536205 | None:intergenic | 45.0% | |
| ACGGCTAAATCAAACAGGTG+GGG | - | chr1_4:53536204-53536223 | None:intergenic | 45.0% | |
| CACGGCTAAATCAAACAGGT+GGG | - | chr1_4:53536205-53536224 | None:intergenic | 45.0% | |
| TCTCCACGGCTAAATCAAAC+AGG | - | chr1_4:53536209-53536228 | None:intergenic | 45.0% | |
| ! | GTTTGATTTAGCCGTGGAGA+AGG | + | chr1_4:53536209-53536228 | Msa0169990:intron | 45.0% |
| CACCTTAACATCCTTCTCCA+CGG | - | chr1_4:53536223-53536242 | None:intergenic | 45.0% | |
| GGATGTTAAGGTGGAGCTTA+TGG | + | chr1_4:53536230-53536249 | Msa0169990:intron | 45.0% | |
| GTGGGAAGAATAGAGTGTGA+GGG | + | chr1_4:53536300-53536319 | Msa0169990:intron | 45.0% | |
| AGGATGGTGTTCATGACTCT+TGG | + | chr1_4:53536356-53536375 | Msa0169990:intron | 45.0% | |
| ATGGTGTTCATGACTCTTGG+AGG | + | chr1_4:53536359-53536378 | Msa0169990:intron | 45.0% | |
| ! | TGGCTTTTGGATCCTGTTCA+TGG | + | chr1_4:53536382-53536401 | Msa0169990:intron | 45.0% |
| GGATCCTGTTCATGGCTATA+CGG | + | chr1_4:53536390-53536409 | Msa0169990:intron | 45.0% | |
| !! | CACACAAGCTGTGTCATTTG+AGG | - | chr1_4:53536584-53536603 | None:intergenic | 45.0% |
| CTCAAATGACACAGCTTGTG+TGG | + | chr1_4:53536582-53536601 | Msa0169990:intron | 45.0% | |
| ! | TCTGGTATCAGGTTTGGAAC+TGG | + | chr1_4:53536668-53536687 | Msa0169990:intron | 45.0% |
| !!! | GGTATTTTTTCAGTGCCTGC+AGG | + | chr1_4:53536694-53536713 | Msa0169990:intron | 45.0% |
| !!! | ACTCCGTTTTCTAAGATGGC+GGG | + | chr1_4:53536736-53536755 | Msa0169990:intron | 45.0% |
| ATCCCCGCCATCTTAGAAAA+CGG | - | chr1_4:53536742-53536761 | None:intergenic | 45.0% | |
| TTTATAGCTACCACGACTGG+TGG | + | chr1_4:53536934-53536953 | Msa0169990:intron | 45.0% | |
| ! | AGAGATTTTTCCACCAGTCG+TGG | - | chr1_4:53536947-53536966 | None:intergenic | 45.0% |
| ! | TCCTTTTTGCACACCTTGTG+CGG | + | chr1_4:53537061-53537080 | Msa0169990:intron | 45.0% |
| GTGCGTCTTGATAAACAGAG+TGG | - | chr1_4:53537360-53537379 | None:intergenic | 45.0% | |
| !! | TCTTTCGTTTTGGTACCCCT+TGG | - | chr1_4:53537598-53537617 | None:intergenic | 45.0% |
| !! | AGGGGTACCAAAACGAAAGA+CGG | + | chr1_4:53537598-53537617 | Msa0169990:intron | 45.0% |
| ! | CAACATGGCTAAGGATTGGT+TGG | - | chr1_4:53537706-53537725 | None:intergenic | 45.0% |
| GAGTCAACATGGCTAAGGAT+TGG | - | chr1_4:53537710-53537729 | None:intergenic | 45.0% | |
| CTTCAATTTCTCATCCCCGT+TGG | - | chr1_4:53538117-53538136 | None:intergenic | 45.0% | |
| ! | ATTTGGGACGAGTTTGGGTA+TGG | + | chr1_4:53538396-53538415 | Msa0169990:intron | 45.0% |
| ! | TTTGGGACGAGTTTGGGTAT+GGG | + | chr1_4:53538397-53538416 | Msa0169990:intron | 45.0% |
| ACGAGTTTGGGTATGGGTTT+GGG | + | chr1_4:53538403-53538422 | Msa0169990:intron | 45.0% | |
| TTCAAAACACGGGTATGGGA+CGG | - | chr1_4:53538452-53538471 | None:intergenic | 45.0% | |
| CCGATTTCAAAACACGGGTA+TGG | - | chr1_4:53538457-53538476 | None:intergenic | 45.0% | |
| !!! | GGGTTTTTCCCGTTTTGACT+GGG | - | chr1_4:53538486-53538505 | None:intergenic | 45.0% |
| ACGGGAAAAACCCGTCAAAT+TGG | + | chr1_4:53538493-53538512 | Msa0169990:intron | 45.0% | |
| CGGGAAAAACCCGTCAAATT+GGG | + | chr1_4:53538494-53538513 | Msa0169990:intron | 45.0% | |
| ! | CGTCAAATTGGGTTTGGTTC+AGG | + | chr1_4:53538505-53538524 | Msa0169990:intron | 45.0% |
| ! | CAAATTGGGTTTGGTTCAGG+CGG | + | chr1_4:53538508-53538527 | Msa0169990:intron | 45.0% |
| ! | AAATTGGGTTTGGTTCAGGC+GGG | + | chr1_4:53538509-53538528 | Msa0169990:intron | 45.0% |
| GACAACAAAACCCATACCTG+TGG | - | chr1_4:53538538-53538557 | None:intergenic | 45.0% | |
| ATGGGGCGATGGTTATTAGT+AGG | - | chr1_4:53538564-53538583 | None:intergenic | 45.0% | |
| TGATAATAAGGGTGAAGGGG+TGG | - | chr1_4:53538727-53538746 | None:intergenic | 45.0% | |
| !! | CATGCGAGTCTAGTTCTCTT+TGG | - | chr1_4:53539172-53539191 | None:intergenic | 45.0% |
| !!! | TAATTTTTTTTTTTTTGTTT+TGG | - | chr1_4:53530703-53530722 | None:intergenic | 5.0% |
| !!! | AAAAAAAATTATGTTTTAAT+TGG | + | chr1_4:53530712-53530731 | Msa0169990:intron | 5.0% |
| !! | AATATAAAAAAAAAAATTGT+TGG | - | chr1_4:53532678-53532697 | None:intergenic | 5.0% |
| !!! | TAAATATTTATATTTTCAAA+AGG | - | chr1_4:53534173-53534192 | None:intergenic | 5.0% |
| !!! | ATAAAGTTTATAATATTTTT+TGG | - | chr1_4:53534235-53534254 | None:intergenic | 5.0% |
| !!! | AAATTTTTATTATAATTTGA+TGG | + | chr1_4:53534891-53534910 | Msa0169990:intron | 5.0% |
| !! | AAAAAAATTTGTATTTAAAT+CGG | - | chr1_4:53535413-53535432 | None:intergenic | 5.0% |
| !!! | AAATATTGATAATTTTTTTT+AGG | - | chr1_4:53535997-53536016 | None:intergenic | 5.0% |
| TTCAACCTCTCCATCACCGA+CGG | + | chr1_4:53530157-53530176 | Msa0169990:CDS | 50.0% | |
| TTCACCGCTTGGAACTGCAA+CGG | + | chr1_4:53530181-53530200 | Msa0169990:CDS | 50.0% | |
| AGTACCGTTGCAGTTCCAAG+CGG | - | chr1_4:53530188-53530207 | None:intergenic | 50.0% | |
| CAACGTGTCAGTGTCAGTGT+TGG | - | chr1_4:53530466-53530485 | None:intergenic | 50.0% | |
| CGCAAGCACTACTTAAACCG+TGG | - | chr1_4:53530850-53530869 | None:intergenic | 50.0% | |
| AATGGTTGCGGTTACGTTGG+GGG | + | chr1_4:53530872-53530891 | Msa0169990:intron | 50.0% | |
| TGTCTCTGTGACTGCGATTG+GGG | - | chr1_4:53530921-53530940 | None:intergenic | 50.0% | |
| CTGTCTCTGTGACTGCGATT+GGG | - | chr1_4:53530922-53530941 | None:intergenic | 50.0% | |
| ! | GGAGTTGGTCCTTTCACTAC+TGG | + | chr1_4:53531131-53531150 | Msa0169990:intron | 50.0% |
| GTTGTCGTGGACGTTTGAGA+AGG | + | chr1_4:53531180-53531199 | Msa0169990:intron | 50.0% | |
| AGGGAGGAATGACACTGCAT+TGG | + | chr1_4:53531200-53531219 | Msa0169990:CDS | 50.0% | |
| ! | CTACTAAGTGGCTTGTGAGC+GGG | + | chr1_4:53531980-53531999 | Msa0169990:intron | 50.0% |
| GCCATATGATGGTTCTCAGG+TGG | + | chr1_4:53532323-53532342 | Msa0169990:intron | 50.0% | |
| ATTTCTGCAGAGATTGGGCC+CGG | - | chr1_4:53532580-53532599 | None:intergenic | 50.0% | |
| CCCAATCTCTGCAGAAATGC+AGG | + | chr1_4:53532582-53532601 | Msa0169990:intron | 50.0% | |
| GCCTGCATTTCTGCAGAGAT+TGG | - | chr1_4:53532586-53532605 | None:intergenic | 50.0% | |
| AGAAATGCAGGCCTGGAAAC+AGG | + | chr1_4:53532594-53532613 | Msa0169990:intron | 50.0% | |
| GTAAATCTTTGAGCTGGGGC+TGG | + | chr1_4:53532616-53532635 | Msa0169990:intron | 50.0% | |
| GGTTTCACACCTGGTAGAAC+GGG | + | chr1_4:53532637-53532656 | Msa0169990:intron | 50.0% | |
| GTTTCACACCTGGTAGAACG+GGG | + | chr1_4:53532638-53532657 | Msa0169990:intron | 50.0% | |
| GCTATGCCGGTAAACCATAC+AGG | - | chr1_4:53533378-53533397 | None:intergenic | 50.0% | |
| AGGGTGTAACCATGCTATGC+CGG | - | chr1_4:53533391-53533410 | None:intergenic | 50.0% | |
| CAAGTAAGCGTTCTCGTCCA+AGG | + | chr1_4:53533825-53533844 | Msa0169990:intron | 50.0% | |
| GAGATATCACAAGGGGCTTG+TGG | - | chr1_4:53533973-53533992 | None:intergenic | 50.0% | |
| ! | AGGTGTTCGTGCAGCCTTTT+TGG | - | chr1_4:53534484-53534503 | None:intergenic | 50.0% |
| ! | AGTTCATGGCCAGAGTTGGT+TGG | + | chr1_4:53534953-53534972 | Msa0169990:CDS | 50.0% |
| GTTGGTTGGAGTGGAAGGAA+AGG | + | chr1_4:53534967-53534986 | Msa0169990:CDS | 50.0% | |
| CCTGTCAAAGCGGAAGTCAT+CGG | - | chr1_4:53535065-53535084 | None:intergenic | 50.0% | |
| CGATGACTTCCGCTTTGACA+GGG | + | chr1_4:53535063-53535082 | Msa0169990:CDS | 50.0% | |
| ACTTCCGCTTTGACAGGGTT+AGG | + | chr1_4:53535068-53535087 | Msa0169990:CDS | 50.0% | |
| CTTCCGCTTTGACAGGGTTA+GGG | + | chr1_4:53535069-53535088 | Msa0169990:CDS | 50.0% | |
| GCTTTGACAGGGTTAGGGTT+TGG | + | chr1_4:53535074-53535093 | Msa0169990:CDS | 50.0% | |
| GTGACGTGACCGAGCTTATA+TGG | + | chr1_4:53535505-53535524 | Msa0169990:intron | 50.0% | |
| !! | GTAGGATAGTTGGTGATGGG+AGG | + | chr1_4:53536121-53536140 | Msa0169990:intron | 50.0% |
| CGGCTAAATCAAACAGGTGG+GGG | - | chr1_4:53536203-53536222 | None:intergenic | 50.0% | |
| CCACGGCTAAATCAAACAGG+TGG | - | chr1_4:53536206-53536225 | None:intergenic | 50.0% | |
| ! | CCACCTGTTTGATTTAGCCG+TGG | + | chr1_4:53536203-53536222 | Msa0169990:intron | 50.0% |
| AGCCGTGGAGAAGGATGTTA+AGG | + | chr1_4:53536218-53536237 | Msa0169990:intron | 50.0% | |
| CGTGGAGAAGGATGTTAAGG+TGG | + | chr1_4:53536221-53536240 | Msa0169990:intron | 50.0% | |
| TTAAGGTGGAGCTTATGGGG+AGG | + | chr1_4:53536235-53536254 | Msa0169990:intron | 50.0% | |
| CGTGGGAAGAATAGAGTGTG+AGG | + | chr1_4:53536299-53536318 | Msa0169990:intron | 50.0% | |
| GTGTTCATGACTCTTGGAGG+TGG | + | chr1_4:53536362-53536381 | Msa0169990:intron | 50.0% | |
| ! | TGACTCTTGGAGGTGGCTTT+TGG | + | chr1_4:53536369-53536388 | Msa0169990:intron | 50.0% |
| AATGACACAGCTTGTGTGGG+AGG | + | chr1_4:53536586-53536605 | Msa0169990:intron | 50.0% | |
| ATGACACAGCTTGTGTGGGA+GGG | + | chr1_4:53536587-53536606 | Msa0169990:intron | 50.0% | |
| !!! | CTCCGTTTTCTAAGATGGCG+GGG | + | chr1_4:53536737-53536756 | Msa0169990:intron | 50.0% |
| GCACAAGGTGTGCAAAAAGG+AGG | - | chr1_4:53537062-53537081 | None:intergenic | 50.0% | |
| ! | CCTTTTTGCACACCTTGTGC+GGG | + | chr1_4:53537062-53537081 | Msa0169990:intron | 50.0% |
| ! | GGGGTACCAAAACGAAAGAC+GGG | + | chr1_4:53537599-53537618 | Msa0169990:intron | 50.0% |
| GGGTACCAAAACGAAAGACG+GGG | + | chr1_4:53537600-53537619 | Msa0169990:intron | 50.0% | |
| GGTACCAAAACGAAAGACGG+GGG | + | chr1_4:53537601-53537620 | Msa0169990:intron | 50.0% | |
| ! | ATCACCCCCGTCTTTCGTTT+TGG | - | chr1_4:53537608-53537627 | None:intergenic | 50.0% |
| !! | GGCTAAGGATTGGTTGGTAG+AGG | - | chr1_4:53537700-53537719 | None:intergenic | 50.0% |
| GGTTGGAGTCAACATGGCTA+AGG | - | chr1_4:53537715-53537734 | None:intergenic | 50.0% | |
| TAATTTCGTGAGGCCTAGGG+TGG | - | chr1_4:53537881-53537900 | None:intergenic | 50.0% | |
| ATCGGTGGTACTTTGGTGGA+AGG | - | chr1_4:53537959-53537978 | None:intergenic | 50.0% | |
| ATGAGAATCGGGTATGGGGA+CGG | - | chr1_4:53538068-53538087 | None:intergenic | 50.0% | |
| GTTACCCTACCCATACCCAA+CGG | + | chr1_4:53538098-53538117 | Msa0169990:intron | 50.0% | |
| TTACCCTACCCATACCCAAC+GGG | + | chr1_4:53538099-53538118 | Msa0169990:intron | 50.0% | |
| TTCTCATCCCCGTTGGGTAT+GGG | - | chr1_4:53538110-53538129 | None:intergenic | 50.0% | |
| TTTCTCATCCCCGTTGGGTA+TGG | - | chr1_4:53538111-53538130 | None:intergenic | 50.0% | |
| TTCAATGTGGGGATGGGGAT+GGG | - | chr1_4:53538176-53538195 | None:intergenic | 50.0% | |
| ATTCAATGTGGGGATGGGGA+TGG | - | chr1_4:53538177-53538196 | None:intergenic | 50.0% | |
| GACGAGTTTGGGTATGGGTT+TGG | + | chr1_4:53538402-53538421 | Msa0169990:intron | 50.0% | |
| CGAGTTTGGGTATGGGTTTG+GGG | + | chr1_4:53538404-53538423 | Msa0169990:intron | 50.0% | |
| ! | TTTGGGTATGGGTTTGGGGT+GGG | + | chr1_4:53538408-53538427 | Msa0169990:intron | 50.0% |
| !! | GGGACGGGTAATGGGTATAA+AGG | - | chr1_4:53538436-53538455 | None:intergenic | 50.0% |
| TCAAAACACGGGTATGGGAC+GGG | - | chr1_4:53538451-53538470 | None:intergenic | 50.0% | |
| CGGGGAAAACCCAGTCAAAA+CGG | + | chr1_4:53538474-53538493 | Msa0169990:intron | 50.0% | |
| GGGGAAAACCCAGTCAAAAC+GGG | + | chr1_4:53538475-53538494 | Msa0169990:intron | 50.0% | |
| !! | CGGGTTTTTCCCGTTTTGAC+TGG | - | chr1_4:53538487-53538506 | None:intergenic | 50.0% |
| !! | TGAAACCGTCGGTGATGGAG+AGG | - | chr1_4:53530165-53530184 | None:intergenic | 55.0% |
| GTTCCAAGCGGTGAAACCGT+CGG | - | chr1_4:53530176-53530195 | None:intergenic | 55.0% | |
| GCTGTCTCTGTGACTGCGAT+TGG | - | chr1_4:53530923-53530942 | None:intergenic | 55.0% | |
| TCGTGGACGTTTGAGAAGGG+AGG | + | chr1_4:53531184-53531203 | Msa0169990:CDS | 55.0% | |
| ! | TAAGTGGCTTGTGAGCGGGT+AGG | + | chr1_4:53531984-53532003 | Msa0169990:intron | 55.0% |
| ATGGGCCCATGCTAAGTGCT+GGG | + | chr1_4:53532541-53532560 | Msa0169990:intron | 55.0% | |
| CTGAGCCCAGCACTTAGCAT+GGG | - | chr1_4:53532549-53532568 | None:intergenic | 55.0% | |
| TTTCTGCAGAGATTGGGCCC+GGG | - | chr1_4:53532579-53532598 | None:intergenic | 55.0% | |
| TCTCTGCAGAAATGCAGGCC+TGG | + | chr1_4:53532587-53532606 | Msa0169990:intron | 55.0% | |
| GACATAAGCCCCGTTCTACC+AGG | - | chr1_4:53532649-53532668 | None:intergenic | 55.0% | |
| ! | ATGGCCAGAGTTGGTTGGAG+TGG | + | chr1_4:53534958-53534977 | Msa0169990:CDS | 55.0% |
| CCTTCCACTCCAACCAACTC+TGG | - | chr1_4:53534965-53534984 | None:intergenic | 55.0% | |
| ! | CCAGAGTTGGTTGGAGTGGA+AGG | + | chr1_4:53534962-53534981 | Msa0169990:CDS | 55.0% |
| CCGATGACTTCCGCTTTGAC+AGG | + | chr1_4:53535062-53535081 | Msa0169990:CDS | 55.0% | |
| !! | CTAAATGTCGGTGACGGGGT+AGG | + | chr1_4:53536063-53536082 | Msa0169990:intron | 55.0% |
| TAGGTGAGGGGGTTGGGAAT+TGG | + | chr1_4:53536082-53536101 | Msa0169990:intron | 55.0% | |
| GCGGCGTAGATTGTTTGCGT+GGG | + | chr1_4:53536282-53536301 | Msa0169990:intron | 55.0% | |
| CGCACCGTATAGCCATGAAC+AGG | - | chr1_4:53536397-53536416 | None:intergenic | 55.0% | |
| !! | TCCTTCAAAGGTGTCCGTGC+TGG | + | chr1_4:53536495-53536514 | Msa0169990:intron | 55.0% |
| ACCAGCACGGACACCTTTGA+AGG | - | chr1_4:53536499-53536518 | None:intergenic | 55.0% | |
| TGATGTCGAAGCTCACCTGC+AGG | - | chr1_4:53536712-53536731 | None:intergenic | 55.0% | |
| CCCGCACAAGGTGTGCAAAA+AGG | - | chr1_4:53537065-53537084 | None:intergenic | 55.0% | |
| ! | TTTTGCACACCTTGTGCGGG+TGG | + | chr1_4:53537065-53537084 | Msa0169990:intron | 55.0% |
| TCGATGTTTCCACCCGCACA+AGG | - | chr1_4:53537077-53537096 | None:intergenic | 55.0% | |
| ! | GGTGTGTGTTGTCTGAGACG+TGG | - | chr1_4:53537938-53537957 | None:intergenic | 55.0% |
| AACTAGGCATGGCAATGGGG+CGG | + | chr1_4:53538019-53538038 | Msa0169990:intron | 55.0% | |
| TGAGAATCGGGTATGGGGAC+GGG | - | chr1_4:53538067-53538086 | None:intergenic | 55.0% | |
| TACCCTACCCATACCCAACG+GGG | + | chr1_4:53538100-53538119 | Msa0169990:intron | 55.0% | |
| ATCCCCGTTGGGTATGGGTA+GGG | - | chr1_4:53538105-53538124 | None:intergenic | 55.0% | |
| TCAATGTGGGGATGGGGATG+GGG | - | chr1_4:53538175-53538194 | None:intergenic | 55.0% | |
| GTTTGGGTATGGGTTTGGGG+TGG | + | chr1_4:53538407-53538426 | Msa0169990:intron | 55.0% | |
| ACGGGTATGGGACGGGTAAT+GGG | - | chr1_4:53538444-53538463 | None:intergenic | 55.0% | |
| AGGCGGGTAACCACAGGTAT+GGG | + | chr1_4:53538525-53538544 | Msa0169990:intron | 55.0% | |
| GCGTGTAGTGGCAGAAGTCA+AGG | - | chr1_4:53538633-53538652 | None:intergenic | 55.0% | |
| AGCGGTGAAACCGTCGGTGA+TGG | - | chr1_4:53530170-53530189 | None:intergenic | 60.0% | |
| TCACCGACGGTTTCACCGCT+TGG | + | chr1_4:53530170-53530189 | Msa0169990:CDS | 60.0% | |
| ! | TGAAGCAGCGTGCTGCTCAG+TGG | + | chr1_4:53530301-53530320 | Msa0169990:CDS | 60.0% |
| ! | GAAGCAGCGTGCTGCTCAGT+GGG | + | chr1_4:53530302-53530321 | Msa0169990:CDS | 60.0% |
| GATGGGCCCATGCTAAGTGC+TGG | + | chr1_4:53532540-53532559 | Msa0169990:intron | 60.0% | |
| CCTGAGCCCAGCACTTAGCA+TGG | - | chr1_4:53532550-53532569 | None:intergenic | 60.0% | |
| !! | CCATGCTAAGTGCTGGGCTC+AGG | + | chr1_4:53532547-53532566 | Msa0169990:intron | 60.0% |
| TTCTGCAGAGATTGGGCCCG+GGG | - | chr1_4:53532578-53532597 | None:intergenic | 60.0% | |
| GGGTTGGGGACATTCCGTTG+AGG | + | chr1_4:53536169-53536188 | Msa0169990:intron | 60.0% | |
| ! | AGCTTATGGGGAGGCGTGGT+TGG | + | chr1_4:53536244-53536263 | Msa0169990:intron | 60.0% |
| ! | GCTTATGGGGAGGCGTGGTT+GGG | + | chr1_4:53536245-53536264 | Msa0169990:intron | 60.0% |
| ! | CTTATGGGGAGGCGTGGTTG+GGG | + | chr1_4:53536246-53536265 | Msa0169990:intron | 60.0% |
| ! | TTATGGGGAGGCGTGGTTGG+GGG | + | chr1_4:53536247-53536266 | Msa0169990:intron | 60.0% |
| ! | TGGTTGGGGGAGTGATGGTG+TGG | + | chr1_4:53536260-53536279 | Msa0169990:intron | 60.0% |
| ! | TTGGGGGAGTGATGGTGTGG+CGG | + | chr1_4:53536263-53536282 | Msa0169990:intron | 60.0% |
| GGCGGCGTAGATTGTTTGCG+TGG | + | chr1_4:53536281-53536300 | Msa0169990:intron | 60.0% | |
| !! | CAAAGGTGTCCGTGCTGGTG+TGG | + | chr1_4:53536500-53536519 | Msa0169990:intron | 60.0% |
| AAGCAAGCGCCACACCAGCA+CGG | - | chr1_4:53536512-53536531 | None:intergenic | 60.0% | |
| ACAGCTTGTGTGGGAGGGTG+TGG | + | chr1_4:53536592-53536611 | Msa0169990:intron | 60.0% | |
| ACTAGGCATGGCAATGGGGC+GGG | + | chr1_4:53538020-53538039 | Msa0169990:intron | 60.0% | |
| GAGAATCGGGTATGGGGACG+GGG | - | chr1_4:53538066-53538085 | None:intergenic | 60.0% | |
| CATCCCCGTTGGGTATGGGT+AGG | - | chr1_4:53538106-53538125 | None:intergenic | 60.0% | |
| AAGCCCATCTCCATCCCCGA+CGG | + | chr1_4:53538134-53538153 | Msa0169990:intron | 60.0% | |
| AACCCGTCGGGGATGGAGAT+GGG | - | chr1_4:53538140-53538159 | None:intergenic | 60.0% | |
| ! | ATCTCCATCCCCGACGGGTT+CGG | + | chr1_4:53538140-53538159 | Msa0169990:intron | 60.0% |
| CACGGGTATGGGACGGGTAA+TGG | - | chr1_4:53538445-53538464 | None:intergenic | 60.0% | |
| TGGTTCAGGCGGGTAACCAC+AGG | + | chr1_4:53538519-53538538 | Msa0169990:intron | 60.0% | |
| CAGGCGGGTAACCACAGGTA+TGG | + | chr1_4:53538524-53538543 | Msa0169990:intron | 60.0% | |
| TGCTGCTCAGTGGGACCAGC+CGG | + | chr1_4:53530311-53530330 | Msa0169990:CDS | 65.0% | |
| CCACGTACTCTTCCACCGGC+TGG | - | chr1_4:53530329-53530348 | None:intergenic | 65.0% | |
| ! | CCAGCCGGTGGAAGAGTACG+TGG | + | chr1_4:53530326-53530345 | Msa0169990:CDS | 65.0% |
| GCTGGGCTCAGGAAAGTCCC+CGG | + | chr1_4:53532558-53532577 | Msa0169990:intron | 65.0% | |
| CTGGGCTCAGGAAAGTCCCC+GGG | + | chr1_4:53532559-53532578 | Msa0169990:intron | 65.0% | |
| !! | GCTGGGGCTGGTTTCACACC+TGG | + | chr1_4:53532628-53532647 | Msa0169990:intron | 65.0% |
| !! | TGTCGGTGACGGGGTAGGTG+AGG | + | chr1_4:53536068-53536087 | Msa0169990:intron | 65.0% |
| !! | GTCGGTGACGGGGTAGGTGA+GGG | + | chr1_4:53536069-53536088 | Msa0169990:intron | 65.0% |
| !! | TCGGTGACGGGGTAGGTGAG+GGG | + | chr1_4:53536070-53536089 | Msa0169990:intron | 65.0% |
| ACGGGGTAGGTGAGGGGGTT+GGG | + | chr1_4:53536076-53536095 | Msa0169990:intron | 65.0% | |
| GTGGAGCTTATGGGGAGGCG+TGG | + | chr1_4:53536240-53536259 | Msa0169990:intron | 65.0% | |
| AGGCGTGGTTGGGGGAGTGA+TGG | + | chr1_4:53536255-53536274 | Msa0169990:intron | 65.0% | |
| CTAGGCATGGCAATGGGGCG+GGG | + | chr1_4:53538021-53538040 | Msa0169990:intron | 65.0% | |
| AGCCCATCTCCATCCCCGAC+GGG | + | chr1_4:53538135-53538154 | Msa0169990:intron | 65.0% | |
| GAACCCGTCGGGGATGGAGA+TGG | - | chr1_4:53538141-53538160 | None:intergenic | 65.0% | |
| ! | TCTCCATCCCCGACGGGTTC+GGG | + | chr1_4:53538141-53538160 | Msa0169990:intron | 65.0% |
| ATACCCGAACCCGTCGGGGA+TGG | - | chr1_4:53538147-53538166 | None:intergenic | 65.0% | |
| ATGTGGGGATGGGGATGGGG+CGG | - | chr1_4:53538172-53538191 | None:intergenic | 65.0% | |
| TGCTCAGTGGGACCAGCCGG+TGG | + | chr1_4:53530314-53530333 | Msa0169990:CDS | 70.0% | |
| !! | CGGTGACGGGGTAGGTGAGG+GGG | + | chr1_4:53536071-53536090 | Msa0169990:intron | 70.0% |
| GACGGGGTAGGTGAGGGGGT+TGG | + | chr1_4:53536075-53536094 | Msa0169990:intron | 70.0% | |
| GCATGGCAATGGGGCGGGGT+GGG | + | chr1_4:53538025-53538044 | Msa0169990:intron | 70.0% | |
| CATGGCAATGGGGCGGGGTG+GGG | + | chr1_4:53538026-53538045 | Msa0169990:intron | 70.0% | |
| GGGGATACCCGAACCCGTCG+GGG | - | chr1_4:53538151-53538170 | None:intergenic | 70.0% | |
| CGGGGATACCCGAACCCGTC+GGG | - | chr1_4:53538152-53538171 | None:intergenic | 70.0% | |
| GCGGGGATACCCGAACCCGT+CGG | - | chr1_4:53538153-53538172 | None:intergenic | 70.0% | |
| TGTGGGGATGGGGATGGGGC+GGG | - | chr1_4:53538171-53538190 | None:intergenic | 70.0% | |
| GGCATGGCAATGGGGCGGGG+TGG | + | chr1_4:53538024-53538043 | Msa0169990:intron | 75.0% | |
| GCAATGGGGCGGGGTGGGGA+CGG | + | chr1_4:53538030-53538049 | Msa0169990:intron | 75.0% | |
| CAATGGGGCGGGGTGGGGAC+GGG | + | chr1_4:53538031-53538050 | Msa0169990:intron | 75.0% | |
| GTGGGGATGGGGATGGGGCG+GGG | - | chr1_4:53538170-53538189 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 53529999 | 53539192 | 53529999 | ID=Msa0169990;Name=Msa0169990 |
| chr1_4 | mRNA | 53529999 | 53539192 | 53529999 | ID=Msa0169990-mRNA-1;Parent=Msa0169990;Name=Msa0169990-mRNA-1;_AED=0.21;_eAED=0.21;_QI=68|0.5|0.42|1|1|1|7|0|334 |
| chr1_4 | exon | 53529999 | 53530202 | 53529999 | ID=Msa0169990-mRNA-1:exon:15903;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53530286 | 53530389 | 53530286 | ID=Msa0169990-mRNA-1:exon:15904;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53531181 | 53531309 | 53531181 | ID=Msa0169990-mRNA-1:exon:15905;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53533194 | 53533316 | 53533194 | ID=Msa0169990-mRNA-1:exon:15906;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53533626 | 53533827 | 53533626 | ID=Msa0169990-mRNA-1:exon:15907;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53534948 | 53535123 | 53534948 | ID=Msa0169990-mRNA-1:exon:15908;Parent=Msa0169990-mRNA-1 |
| chr1_4 | exon | 53539058 | 53539192 | 53539058 | ID=Msa0169990-mRNA-1:exon:15909;Parent=Msa0169990-mRNA-1 |
| chr1_4 | five_prime_UTR | 53529999 | 53530066 | 53529999 | ID=Msa0169990-mRNA-1:five_prime_utr;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53530067 | 53530202 | 53530067 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53530286 | 53530389 | 53530286 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53531181 | 53531309 | 53531181 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53533194 | 53533316 | 53533194 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53533626 | 53533827 | 53533626 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53534948 | 53535123 | 53534948 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| chr1_4 | CDS | 53539058 | 53539192 | 53539058 | ID=Msa0169990-mRNA-1:cds;Parent=Msa0169990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
