AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0111080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111080 MtrunA17_Chr1g0169341 98.000 650 13 0 1 650 1 650 0.0 1309
Msa0111080 MtrunA17_Chr7g0274521 56.006 641 247 12 5 631 29 648 0.0 677
Msa0111080 MtrunA17_Chr1g0190281 53.292 638 250 11 5 636 3 598 0.0 627
Msa0111080 MtrunA17_Chr2g0288551 43.582 631 256 11 8 626 26 568 2.25e-163 481
Msa0111080 MtrunA17_Chr1g0169571 61.272 346 132 2 2 346 3 347 1.85e-144 432
Msa0111080 MtrunA17_Chr1g0169571 57.386 176 65 3 474 647 402 569 4.30e-50 183
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0111080 AT1G04780.1 70.977 665 166 13 4 649 6 662 0.0 889
Msa0111080 AT3G24210.1 62.124 631 197 10 1 630 1 590 0.0 744
Msa0111080 AT3G04470.1 52.977 655 225 12 5 631 3 602 0.0 660
Msa0111080 AT1G62050.1 43.451 649 270 14 9 627 18 599 4.77e-163 481
Msa0111080 AT1G11740.1 52.318 302 141 1 9 310 17 315 2.71e-105 333
Msa0111080 AT1G11740.1 47.953 171 61 4 479 628 364 527 2.39e-37 148

Find 200 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACTTGGCTGTTAAATT+AGG 0.055054 1_3:-24564273 Msa0111080:CDS
AATAAATACAAAAGGGAAAT+TGG 0.200463 1_3:+24565044 None:intergenic
TGCAATTATAGTTGAGTTAA+TGG 0.210169 1_3:+24559488 None:intergenic
TTCACTTGGCTGTTAAATTA+GGG 0.214370 1_3:-24564272 Msa0111080:CDS
CTTCAGACACTTACAAGATT+TGG 0.232931 1_3:-24563978 Msa0111080:CDS
TGAAAAGGTGAGCGATTTAT+TGG 0.236609 1_3:-24563227 Msa0111080:CDS
TTCCTCTTTCTTTCTTCCTT+TGG 0.240326 1_3:-24565143 Msa0111080:five_prime_UTR
CTCTCCATGCTTGTCTGATC+TGG 0.259849 1_3:-24564947 Msa0111080:five_prime_UTR
GGAAAAGGGGTGCGAATCTA+AGG 0.266382 1_3:-24563957 Msa0111080:CDS
GTGTTGTGCTGCAGCATAAA+AGG 0.287438 1_3:-24559572 Msa0111080:three_prime_UTR
AAATCAAAACTTTATCCAAT+AGG 0.292042 1_3:+24564600 None:intergenic
TGTCTAAAACAAATATATTT+AGG 0.297109 1_3:-24563726 Msa0111080:CDS
CTTTGAAGTAGGAAACAAAA+AGG 0.311010 1_3:+24564895 None:intergenic
CAATTCCACCAGATTATACT+TGG 0.314172 1_3:-24559805 Msa0111080:CDS
AAGGATTGAGGCCTATTCTT+TGG 0.316054 1_3:-24563039 Msa0111080:CDS
ATCCATCCCTTGTGCTGTTT+AGG 0.317424 1_3:-24564516 Msa0111080:five_prime_UTR
AGCCTCTTGCTTGGGCAAAA+TGG 0.326240 1_3:-24564113 Msa0111080:CDS
AATCCAACCAGCACTGAAAA+AGG 0.327215 1_3:+24564644 None:intergenic
ATCTTGGTTTCAGTGGATAA+AGG 0.328101 1_3:-24559900 Msa0111080:CDS
GAGCAAGCACTGACCTTAAC+AGG 0.333513 1_3:+24562890 None:intergenic
CTCTTTCTTTCTTCCTTTGG+TGG 0.345300 1_3:-24565140 Msa0111080:five_prime_UTR
CAATTGCCTTCTTTCATCTT+CGG 0.347048 1_3:+24563480 None:intergenic
GGGATCGATGTTGCAAAGTT+TGG 0.347521 1_3:-24564486 Msa0111080:CDS
TTGGGTATTAATCATTTCAT+TGG 0.351047 1_3:-24564854 Msa0111080:five_prime_UTR
CTGTGATACCTTTCATTTCA+AGG 0.359358 1_3:-24564008 Msa0111080:CDS
TAGAAGCTGCCATATTTGTT+TGG 0.360904 1_3:-24559629 Msa0111080:three_prime_UTR
TAAGTTACTAACCTTGGTTT+TGG 0.365215 1_3:+24564826 None:intergenic
AATCAAAACTTTATCCAATA+GGG 0.365910 1_3:+24564601 None:intergenic
TAGAAGCTGCCATATTTGTT+TGG 0.369962 1_3:-24559680 Msa0111080:three_prime_UTR
CAAGTTTGTGGTGACCCTAT+TGG 0.373629 1_3:-24564615 Msa0111080:five_prime_UTR
GCAATTATAGTTGAGTTAAT+GGG 0.374694 1_3:+24559489 None:intergenic
AAGTGAGATCCAAACAAATA+TGG 0.378296 1_3:+24559671 None:intergenic
GCTGAAATGCTTATGGTTGT+TGG 0.381013 1_3:-24564237 Msa0111080:CDS
AGAATTTACAGAAGAAGCTT+TGG 0.383345 1_3:+24563114 None:intergenic
TCTACGCAAAGAGAACTTCT+TGG 0.388331 1_3:+24563250 None:intergenic
AATAAATAAATAAATACAAA+AGG 0.388391 1_3:+24565036 None:intergenic
CAATCTCTGCTGTGATTGAT+AGG 0.391403 1_3:-24564323 Msa0111080:CDS
CTACCGTTACCATCTTCAAT+AGG 0.394559 1_3:+24563370 None:intergenic
TCTTTCTTTCTTCCTTTGGT+GGG 0.394994 1_3:-24565139 Msa0111080:five_prime_UTR
GAAAAGGTGAGCGATTTATT+GGG 0.399396 1_3:-24563226 Msa0111080:CDS
GCATTATCAGCCTCTTGCTT+GGG 0.401369 1_3:-24564121 Msa0111080:CDS
GGTGGAATTGCAAACGGGTC+TGG 0.404701 1_3:+24559818 None:intergenic
CAAATTTCTCTGCTTCATCT+TGG 0.407176 1_3:-24559916 Msa0111080:CDS
ATAAAATCTAGAGGAGTTCC+TGG 0.407650 1_3:-24563580 Msa0111080:CDS
AGGATTATGGTGAGCTTAAG+AGG 0.411282 1_3:-24564431 Msa0111080:CDS
CACTTACAAGATTTGGAAAA+GGG 0.421955 1_3:-24563971 Msa0111080:CDS
AGGGCTGACATGACTTTGGC+TGG 0.422895 1_3:-24563937 Msa0111080:CDS
TTATGGTTGTTGGTGCTGAT+TGG 0.422928 1_3:-24564227 Msa0111080:CDS
TTCTCTTTGCGTAGATGAAA+AGG 0.429956 1_3:-24563242 Msa0111080:CDS
GTGTAGAAGGTTGCCTCGTT+TGG 0.430443 1_3:-24564091 Msa0111080:CDS
AAACAGAAATGGTAGGATCT+TGG 0.430531 1_3:-24563642 Msa0111080:CDS
GGTGAGCTTAAGAGGATACT+TGG 0.431434 1_3:-24564423 Msa0111080:CDS
CATGCTTGTCTGATCTGGAT+TGG 0.431711 1_3:-24564942 Msa0111080:five_prime_UTR
CTTGGTGATGGTTCAGAGGA+TGG 0.433039 1_3:-24563868 Msa0111080:CDS
CTGCTTCATCTTGGTTTCAG+TGG 0.434475 1_3:-24559907 Msa0111080:CDS
TTGTGCTGTTTAGGTATGGC+AGG 0.436450 1_3:-24564507 Msa0111080:exon
GCAGAGAAATTTGTCGCTGC+AGG 0.438127 1_3:+24559926 None:intergenic
AGCGGCTGCTGAAATGCTTA+TGG 0.441584 1_3:-24564244 Msa0111080:CDS
CGAAGATGAAAGAAGGCAAT+TGG 0.443916 1_3:-24563479 Msa0111080:CDS
AGCATTATCAGCCTCTTGCT+TGG 0.448609 1_3:-24564122 Msa0111080:CDS
GTGATTGTGATTGTTAGTGT+TGG 0.449498 1_3:-24564564 Msa0111080:five_prime_UTR
TTGTGATTGTTAGTGTTGGT+TGG 0.452258 1_3:-24564560 Msa0111080:five_prime_UTR
CTTGGGCAAAATGGTGTAGA+AGG 0.452313 1_3:-24564104 Msa0111080:CDS
TGGTCATAGTCCTGTGCATA+AGG 0.452951 1_3:-24564466 Msa0111080:CDS
ACACTTACAAGATTTGGAAA+AGG 0.454221 1_3:-24563972 Msa0111080:CDS
TGGATTATTCTGCAAGTTTG+TGG 0.455880 1_3:-24564627 Msa0111080:five_prime_UTR
GGTTTAATCTGATTATTTGA+AGG 0.456077 1_3:+24563196 None:intergenic
AGAGACATTCCTATTGAAGA+TGG 0.456127 1_3:-24563379 Msa0111080:CDS
CCTGACATGGATGGACTTGT+CGG 0.456807 1_3:+24559959 None:intergenic
TCCCTTGTGCTGTTTAGGTA+TGG 0.456844 1_3:-24564511 Msa0111080:exon
GAGAAGAACAAATCAAAGAA+AGG 0.457216 1_3:-24559749 Msa0111080:CDS
TCAGTTGACTTGGAGGCGCC+AGG 0.458205 1_3:-24563668 Msa0111080:CDS
GAAAATAAGCAGGAAAAGAA+AGG 0.458780 1_3:-24563337 Msa0111080:CDS
AAAGAGGAAGTTGTGAATGT+TGG 0.459212 1_3:+24565157 None:intergenic
CTTTCTTTCTTCCTTTGGTG+GGG 0.459992 1_3:-24565138 Msa0111080:five_prime_UTR
ATCGTTAAGTTCTTCACTCT+CGG 0.461882 1_3:+24563510 None:intergenic
TGAGATCATGCAGAGTGATC+CGG 0.463016 1_3:+24563834 None:intergenic
TTTGGAAAAGTCATAAAGCT+AGG 0.465645 1_3:-24559611 Msa0111080:three_prime_UTR
TTTGCAACAATGTCAAGTAA+TGG 0.466040 1_3:+24562977 None:intergenic
AGAAAGGATGGTTTGGTGGA+TGG 0.466730 1_3:-24563321 Msa0111080:CDS
GGGATTATAACCTTTGAAGT+AGG 0.468247 1_3:+24564884 None:intergenic
ATTGGAGGATGCACTTAAGC+TGG 0.468456 1_3:-24563461 Msa0111080:CDS
GATGGTAACGGTAGCAATAG+TGG 0.470448 1_3:-24563361 Msa0111080:CDS
CAGGAAAAGAAAGGATGGTT+TGG 0.470506 1_3:-24563328 Msa0111080:CDS
GAACCTGCAGCAGATGAACT+AGG 0.474066 1_3:+24559866 None:intergenic
ACTTACAACAAAACTTCCAA+TGG 0.475435 1_3:-24562921 Msa0111080:CDS
AGAAGAACAAATCAAAGAAA+GGG 0.475808 1_3:-24559748 Msa0111080:CDS
CGCCCTAGTTCATCTGCTGC+AGG 0.477336 1_3:-24559869 Msa0111080:CDS
TAATCTGGTGGAATTGCAAA+CGG 0.477515 1_3:+24559812 None:intergenic
ACTCTGATGGTGGGAACCAC+AGG 0.479198 1_3:+24560040 None:intergenic
ATGACTTTGGCTGGTTTCGA+CGG 0.483089 1_3:-24563928 Msa0111080:CDS
CATGATCTCACACAAGGAAA+AGG 0.485210 1_3:-24563821 Msa0111080:CDS
CGTGAAAATGAATATAAGAA+AGG 0.486287 1_3:-24563058 Msa0111080:CDS
TATTTACAACAATAAAATCA+AGG 0.488975 1_3:+24559386 None:intergenic
ATAGGAATGTCTCTAAAGCT+TGG 0.492744 1_3:+24563388 None:intergenic
CTTACAACAAAACTTCCAAT+GGG 0.493342 1_3:-24562920 Msa0111080:CDS
CTGCAGGTTCCAGCAGTAGT+AGG 0.495341 1_3:-24559853 Msa0111080:CDS
ATAAATAAATAAATACAAAA+GGG 0.499372 1_3:+24565037 None:intergenic
CTCTCTTCGCCTGACATGGA+TGG 0.499410 1_3:+24559950 None:intergenic
TTCTGTTGAGGTTGTTGTGA+GGG 0.502579 1_3:-24563164 Msa0111080:CDS
ATATGGCAGCTTCTATTCAA+TGG 0.502947 1_3:+24559637 None:intergenic
ATATGGCAGCTTCTATTCAA+TGG 0.502947 1_3:+24559688 None:intergenic
GCAGTGACCCAAGTATAATC+TGG 0.510448 1_3:+24559797 None:intergenic
TGGATCTCACTTCACTTCAG+TGG 0.510968 1_3:-24559660 Msa0111080:three_prime_UTR
TCTAAGGGCTGACATGACTT+TGG 0.515499 1_3:-24563941 Msa0111080:CDS
CCGACAAGTCCATCCATGTC+AGG 0.516227 1_3:-24559959 Msa0111080:CDS
TTGGTGATGGTTCAGAGGAT+GGG 0.516406 1_3:-24563867 Msa0111080:CDS
GGGTGAGATTCGTACGGAAG+CGG 0.516999 1_3:-24564376 Msa0111080:CDS
GTGAGCTTAAGAGGATACTT+GGG 0.519970 1_3:-24564422 Msa0111080:CDS
CACCAAAGGAAGAAAGAAAG+AGG 0.520003 1_3:+24565141 None:intergenic
TTTACCTAAGCTGTGTAATG+TGG 0.520667 1_3:-24564397 Msa0111080:CDS
ATGCTGCAGCACAACACCAT+TGG 0.520683 1_3:+24559578 None:intergenic
TGTTTGAGAGAGAGAAAGAG+AGG 0.521113 1_3:+24565092 None:intergenic
GAAGTTGTGAATGTTGGAAA+AGG 0.521824 1_3:+24565163 None:intergenic
GCAGATGAACTAGGGCGGTA+TGG 0.522475 1_3:+24559875 None:intergenic
GGTGTTGCGAATTCATCTAA+TGG 0.523036 1_3:+24559983 None:intergenic
AATCTGGTGGAATTGCAAAC+GGG 0.523683 1_3:+24559813 None:intergenic
TGAAGAGGAGTATCGCGATT+CGG 0.526239 1_3:+24564291 None:intergenic
GCCTGGTATTGATGTTACTC+AGG 0.530031 1_3:-24563704 Msa0111080:CDS
CTGAACAATGATAGTGATGA+GGG 0.531253 1_3:-24563427 Msa0111080:CDS
TCATCGTCTGTCATAGCTCC+AGG 0.531703 1_3:+24563562 None:intergenic
AAAACAAATATATTTAGGCC+TGG 0.531734 1_3:-24563721 Msa0111080:CDS
TCATGCAGAGTGATCCGGGC+TGG 0.533564 1_3:+24563839 None:intergenic
TTTGGCGAAAGCCAAAGAAT+AGG 0.538222 1_3:+24563028 None:intergenic
AGCAGAAGTCGTCATAAAGA+TGG 0.538908 1_3:-24563085 Msa0111080:CDS
GTTTGAGAGAGAGAAAGAGA+GGG 0.545889 1_3:+24565093 None:intergenic
ACCTCAACAGAATGTCTCCC+TGG 0.545970 1_3:+24563175 None:intergenic
TTAACAGGAAAAGTTCCCAT+TGG 0.546615 1_3:+24562905 None:intergenic
AGGGCTCTCTTCGCCTGACA+TGG 0.547387 1_3:+24559946 None:intergenic
GAGATCATGCAGAGTGATCC+GGG 0.550659 1_3:+24563835 None:intergenic
GCGCCAGGAGAAAACAGAAA+TGG 0.553288 1_3:-24563653 Msa0111080:CDS
TGTGCTGTTTAGGTATGGCA+GGG 0.554264 1_3:-24564506 Msa0111080:exon
CAAATCTTGTAAGTGTCTGA+AGG 0.555543 1_3:+24563979 None:intergenic
GGTAGGATCTTGGAAAGCTA+AGG 0.558300 1_3:-24563632 Msa0111080:CDS
TACCTAAACAGCACAAGGGA+TGG 0.559050 1_3:+24564514 None:intergenic
GGTTCCCACCATCAGAGTAT+TGG 0.560691 1_3:-24560035 Msa0111080:CDS
GAAAAGAAAGGATGGTTTGG+TGG 0.562638 1_3:-24563325 Msa0111080:CDS
TCGCGATACTCCTCTTCACT+TGG 0.563493 1_3:-24564286 Msa0111080:CDS
ATAAGCAGGAAAAGAAAGGA+TGG 0.566965 1_3:-24563333 Msa0111080:CDS
AGATGAAAGAAGGCAATTGG+AGG 0.568053 1_3:-24563476 Msa0111080:CDS
TTGTGAGGGGCGATGAGCAA+CGG 0.572804 1_3:-24563150 Msa0111080:CDS
TATTCAGGTTGCCATTCCTG+TGG 0.573026 1_3:-24560056 Msa0111080:intron
GTTTGGTAGCGACGATGTGG+AGG 0.573644 1_3:-24564074 Msa0111080:CDS
TCACTTGGCTGTTAAATTAG+GGG 0.574791 1_3:-24564271 Msa0111080:CDS
TCAAATAATCAGATTAAACC+AGG 0.576252 1_3:-24563193 Msa0111080:CDS
AGTGACCAATACTCTGATGG+TGG 0.577816 1_3:+24560030 None:intergenic
CTGATCTGGATTGGATCACA+AGG 0.578500 1_3:-24564933 Msa0111080:five_prime_UTR
TCACCCACATTACACAGCTT+AGG 0.579319 1_3:+24564393 None:intergenic
GATGGTGGGAACCACAGGAA+TGG 0.580921 1_3:+24560045 None:intergenic
AAAGAGAGAAACCCCACCAA+AGG 0.581628 1_3:+24565127 None:intergenic
AAAATCACAGCCTTATGCAC+AGG 0.583563 1_3:+24564456 None:intergenic
TGGAGTTTGCAGAATGAACA+AGG 0.585411 1_3:-24564207 Msa0111080:CDS
GCTAGGATTTGATTCTCCAA+TGG 0.585418 1_3:-24559594 Msa0111080:three_prime_UTR
CAATAGTGGAGAAAATAAGC+AGG 0.586148 1_3:-24563347 Msa0111080:CDS
AACCTGCAGCAGATGAACTA+GGG 0.586365 1_3:+24559867 None:intergenic
ATTTACAACAATAAAATCAA+GGG 0.591541 1_3:+24559387 None:intergenic
TGCCATACCTAAACAGCACA+AGG 0.592296 1_3:+24564509 None:intergenic
GGTGCAATCCTTGAAATGAA+AGG 0.596454 1_3:+24564000 None:intergenic
CAGAGAAATTTGTCGCTGCA+GGG 0.601633 1_3:+24559927 None:intergenic
TCTGTTGAGGTTGTTGTGAG+GGG 0.602480 1_3:-24563163 Msa0111080:CDS
AATTTAACAGCCAAGTGAAG+AGG 0.606406 1_3:+24564276 None:intergenic
ACGCAAAGAGAACTTCTTGG+TGG 0.607111 1_3:+24563253 None:intergenic
AATTCCACCAGATTATACTT+GGG 0.608111 1_3:-24559804 Msa0111080:CDS
ATTCTGTTGAGGTTGTTGTG+AGG 0.608833 1_3:-24563165 Msa0111080:CDS
ATGAATATAAGAAAGGATTG+AGG 0.612683 1_3:-24563051 Msa0111080:CDS
GTTGTAAGTATAAAATCTAG+AGG 0.612791 1_3:-24563589 Msa0111080:CDS
ACCAGGGAGACATTCTGTTG+AGG 0.613862 1_3:-24563176 Msa0111080:CDS
CATTGGACAAACCAAAACCA+AGG 0.613920 1_3:-24564837 Msa0111080:intron
GAAAAGGGGTGCGAATCTAA+GGG 0.614309 1_3:-24563956 Msa0111080:CDS
TGTTGTGCTGCAGCATAAAA+GGG 0.614359 1_3:-24559571 Msa0111080:three_prime_UTR
CACATCGTCGCTACCAAACG+AGG 0.615764 1_3:+24564078 None:intergenic
CAATCCAGATCAGACAAGCA+TGG 0.617432 1_3:+24564943 None:intergenic
ACTGAACAATGATAGTGATG+AGG 0.620972 1_3:-24563428 Msa0111080:CDS
ATGATCTCACTTCACTTCAG+TGG 0.621864 1_3:-24559711 Msa0111080:exon
CTCGTTTGGTAGCGACGATG+TGG 0.623287 1_3:-24564077 Msa0111080:CDS
TTACCTAAGCTGTGTAATGT+GGG 0.623380 1_3:-24564396 Msa0111080:CDS
GAGGATGGGAAAGTCCAGCC+CGG 0.628594 1_3:-24563853 Msa0111080:CDS
GTGACCCAAGTATAATCTGG+TGG 0.630524 1_3:+24559800 None:intergenic
GCCTGAGTAACATCAATACC+AGG 0.632873 1_3:+24563703 None:intergenic
GTGACCAATACTCTGATGGT+GGG 0.634458 1_3:+24560031 None:intergenic
CAGGAGAAAACAGAAATGGT+AGG 0.637085 1_3:-24563649 Msa0111080:CDS
TGTTAAATTAGGGGATGAAG+CGG 0.639879 1_3:-24564262 Msa0111080:CDS
GTTTGCAGAATGAACAAGGG+TGG 0.641695 1_3:-24564203 Msa0111080:CDS
TGAGCTTAAGAGGATACTTG+GGG 0.641820 1_3:-24564421 Msa0111080:CDS
ATTCCTATTGAAGATGGTAA+CGG 0.643760 1_3:-24563373 Msa0111080:CDS
TGAGGGGCGATGAGCAACGG+AGG 0.648943 1_3:-24563147 Msa0111080:CDS
ACTTACAAGATTTGGAAAAG+GGG 0.652824 1_3:-24563970 Msa0111080:CDS
TGGCGCCTCCAAGTCAACTG+AGG 0.653180 1_3:+24563670 None:intergenic
GATCTCACACAAGGAAAAGG+AGG 0.660308 1_3:-24563818 Msa0111080:CDS
AAAAGTGACCAATACTCTGA+TGG 0.668899 1_3:+24560027 None:intergenic
TAATGTGGGTGAGATTCGTA+CGG 0.669654 1_3:-24564382 Msa0111080:CDS
CAAATAATCAGATTAAACCA+GGG 0.677591 1_3:-24563192 Msa0111080:CDS
GACATGGATGGACTTGTCGG+CGG 0.681897 1_3:+24559962 None:intergenic
ATAAAAGGGATGAAACATTG+TGG 0.682574 1_3:-24559557 Msa0111080:three_prime_UTR
GGAGTTTGCAGAATGAACAA+GGG 0.699547 1_3:-24564206 Msa0111080:CDS
GAGCTTAAGAGGATACTTGG+GGG 0.708775 1_3:-24564420 Msa0111080:CDS
TGAACAATGATAGTGATGAG+GGG 0.712496 1_3:-24563426 Msa0111080:CDS
CTGCAGCAGATGAACTAGGG+CGG 0.715429 1_3:+24559870 None:intergenic
ACTCTGCATGATCTCACACA+AGG 0.718060 1_3:-24563827 Msa0111080:CDS
GCCATACCTAAACAGCACAA+GGG 0.724512 1_3:+24564510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTGCTTTAAATAAT+TGG - chr1_3:24563234-24563253 Msa0111080:CDS 10.0%
!!! TTTTTTCTATTTTACTATAA+GGG - chr1_3:24564050-24564069 Msa0111080:CDS 10.0%
!!! TGTCTAAAACAAATATATTT+AGG - chr1_3:24560834-24560853 Msa0111080:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr1_3:24561889-24561908 None:intergenic 15.0%
!! GAATATAATTAATCATGTTT+CGG - chr1_3:24561917-24561936 Msa0111080:intron 15.0%
!! ATAGTAAAATAGAAAAAAGA+TGG + chr1_3:24564048-24564067 None:intergenic 15.0%
!!! CTTTTTTCTATTTTACTATA+AGG - chr1_3:24564049-24564068 Msa0111080:CDS 15.0%
!! ATTTACAACAATAAAATCAA+GGG + chr1_3:24565176-24565195 None:intergenic 15.0%
!! TATTTACAACAATAAAATCA+AGG + chr1_3:24565177-24565196 None:intergenic 15.0%
!! AATAAATACAAAAGGGAAAT+TGG + chr1_3:24559519-24559538 None:intergenic 20.0%
!!! TTTTGGTTTTTGGTTTATTT+AGG - chr1_3:24559878-24559897 Msa0111080:CDS 20.0%
!!! TTTTGGTTTATTTAGGTTTT+TGG - chr1_3:24559885-24559904 Msa0111080:CDS 20.0%
!!! TTTGGTTTATTTAGGTTTTT+GGG - chr1_3:24559886-24559905 Msa0111080:CDS 20.0%
!! AATCAAAACTTTATCCAATA+GGG + chr1_3:24559962-24559981 None:intergenic 20.0%
!! AAATCAAAACTTTATCCAAT+AGG + chr1_3:24559963-24559982 None:intergenic 20.0%
!!! TCAATTTTTAATGGAAAGTT+TGG + chr1_3:24561553-24561572 None:intergenic 20.0%
!!! AAGAGTTCTTCAATTTTTAA+TGG + chr1_3:24561562-24561581 None:intergenic 20.0%
!!! ACTAACAATATGAATTTTCT+GGG - chr1_3:24561717-24561736 Msa0111080:intron 20.0%
!!! ATTTTCTCAAATTATTATCG+GGG + chr1_3:24561887-24561906 None:intergenic 20.0%
!!! CATTTTCTCAAATTATTATC+GGG + chr1_3:24561888-24561907 None:intergenic 20.0%
!!! TCTAATTAGCTTGAATTTTA+TGG - chr1_3:24562381-24562400 Msa0111080:intron 20.0%
!! CAATACTAAATACAAATGTA+GGG + chr1_3:24562478-24562497 None:intergenic 20.0%
!! TTCTATCCAATCATAATTAA+TGG + chr1_3:24562521-24562540 None:intergenic 20.0%
!! AAAAAAAAAAAAATCCCACA+GGG + chr1_3:24562679-24562698 None:intergenic 20.0%
!! AAAAAAAAAAAAAATCCCAC+AGG + chr1_3:24562680-24562699 None:intergenic 20.0%
!!! GTTTGTTTCTTTTGTATTTT+TGG - chr1_3:24562701-24562720 Msa0111080:intron 20.0%
!!! TTTTGTATTTTTGGATACAA+GGG - chr1_3:24562710-24562729 Msa0111080:intron 20.0%
!! TTATAAAATAGATATACTCC+AGG - chr1_3:24562982-24563001 Msa0111080:CDS 20.0%
!! TATAAAATAGATATACTCCA+GGG - chr1_3:24562983-24563002 Msa0111080:CDS 20.0%
!! ATGAACTATAAGTTATAATG+TGG + chr1_3:24563467-24563486 None:intergenic 20.0%
!!! GTTTTTGTAAAAAAAAGTCT+AGG - chr1_3:24563534-24563553 Msa0111080:CDS 20.0%
!! CAAAGATTCTATTAATTATG+TGG + chr1_3:24563784-24563803 None:intergenic 20.0%
!!! AGATTTAATCCCTATAATTT+TGG - chr1_3:24563911-24563930 Msa0111080:CDS 20.0%
!! AAGGAAATTCCAAAATTATA+GGG + chr1_3:24563923-24563942 None:intergenic 20.0%
!! AAAGGAAATTCCAAAATTAT+AGG + chr1_3:24563924-24563943 None:intergenic 20.0%
!! AATAATGAAGAACAGTATAA+AGG + chr1_3:24563942-24563961 None:intergenic 20.0%
!! TCATCTATAAAGAAAGATAT+GGG + chr1_3:24564459-24564478 None:intergenic 20.0%
!! ATCATCTATAAAGAAAGATA+TGG + chr1_3:24564460-24564479 None:intergenic 20.0%
!!! GGAAAAGGTATTACTAAAAA+TGG + chr1_3:24559385-24559404 None:intergenic 25.0%
!! TTTGAAGTAGGAAACAAAAA+GGG + chr1_3:24559667-24559686 None:intergenic 25.0%
!! GTTATAATCCCTTGATTTTT+GGG - chr1_3:24559688-24559707 Msa0111080:three_prime_UTR 25.0%
! GATTAATACCCAAAAATCAA+GGG + chr1_3:24559699-24559718 None:intergenic 25.0%
! TGATTAATACCCAAAAATCA+AGG + chr1_3:24559700-24559719 None:intergenic 25.0%
! TTGGGTATTAATCATTTCAT+TGG - chr1_3:24559706-24559725 Msa0111080:three_prime_UTR 25.0%
! ATAAAGTAAGTTACTAACCT+TGG + chr1_3:24559743-24559762 None:intergenic 25.0%
!!! AAGAAAGAAAAGTATCAAGT+GGG + chr1_3:24559801-24559820 None:intergenic 25.0%
!!! AAAGAAAGAAAAGTATCAAG+TGG + chr1_3:24559802-24559821 None:intergenic 25.0%
! TCTCATTCTAAATTGCTAAA+TGG - chr1_3:24559851-24559870 Msa0111080:CDS 25.0%
! CTCATTCTAAATTGCTAAAT+GGG - chr1_3:24559852-24559871 Msa0111080:CDS 25.0%
!!! TTTATTTAGGTTTTTGGGAT+AGG - chr1_3:24559891-24559910 Msa0111080:CDS 25.0%
! AAAACAAATATATTTAGGCC+TGG - chr1_3:24560839-24560858 Msa0111080:intron 25.0%
! GTTGTAAGTATAAAATCTAG+AGG - chr1_3:24560971-24560990 Msa0111080:intron 25.0%
! GGTTTAATCTGATTATTTGA+AGG + chr1_3:24561367-24561386 None:intergenic 25.0%
! TCAAATAATCAGATTAAACC+AGG - chr1_3:24561367-24561386 Msa0111080:intron 25.0%
! CAAATAATCAGATTAAACCA+GGG - chr1_3:24561368-24561387 Msa0111080:intron 25.0%
! CGTGAAAATGAATATAAGAA+AGG - chr1_3:24561502-24561521 Msa0111080:intron 25.0%
! ATGAATATAAGAAAGGATTG+AGG - chr1_3:24561509-24561528 Msa0111080:intron 25.0%
!! CACTAACAATATGAATTTTC+TGG - chr1_3:24561716-24561735 Msa0111080:intron 25.0%
! GTCTACAAATCATCATTATT+CGG - chr1_3:24562183-24562202 Msa0111080:intron 25.0%
! TTCAAGCTAATTAGATGAAA+TGG + chr1_3:24562376-24562395 None:intergenic 25.0%
! CTCTCTATTTAAGCTTATTA+AGG + chr1_3:24562415-24562434 None:intergenic 25.0%
! GCAATACTAAATACAAATGT+AGG + chr1_3:24562479-24562498 None:intergenic 25.0%
! TAATTAATGGAAAGTGAAAC+AGG + chr1_3:24562508-24562527 None:intergenic 25.0%
! CACTTTCCATTAATTATGAT+TGG - chr1_3:24562512-24562531 Msa0111080:intron 25.0%
!! ATCCTTTTACCTTATCAAAA+TGG - chr1_3:24562540-24562559 Msa0111080:intron 25.0%
!! TCCTTTTACCTTATCAAAAT+GGG - chr1_3:24562541-24562560 Msa0111080:intron 25.0%
! AAAAAAAAAAAATCCCACAG+GGG + chr1_3:24562678-24562697 None:intergenic 25.0%
!!! CTTTTGTATTTTTGGATACA+AGG - chr1_3:24562709-24562728 Msa0111080:intron 25.0%
!! TTTTAATCCAGACAATATTC+TGG + chr1_3:24562790-24562809 None:intergenic 25.0%
! CAAAAATTTCGGTAATAAGT+GGG + chr1_3:24562853-24562872 None:intergenic 25.0%
! ACAAAAATTTCGGTAATAAG+TGG + chr1_3:24562854-24562873 None:intergenic 25.0%
!! TTTTACATTACAAAATACCC+TGG + chr1_3:24563003-24563022 None:intergenic 25.0%
! AACAGGATATTATTACACAT+TGG + chr1_3:24563308-24563327 None:intergenic 25.0%
! TGTGTAATAATATCCTGTTA+AGG - chr1_3:24563309-24563328 Msa0111080:CDS 25.0%
! ATGTGGTATTAATTGAATAG+AGG + chr1_3:24563450-24563469 None:intergenic 25.0%
!!! ACCTTTTATTTCTCAAGTAT+AGG - chr1_3:24563506-24563525 Msa0111080:CDS 25.0%
! ACCTATACTTGAGAAATAAA+AGG + chr1_3:24563510-24563529 None:intergenic 25.0%
! AAAACGAAATCAAATCACAA+AGG + chr1_3:24563628-24563647 None:intergenic 25.0%
! TTCTATTAATTATGTGGCAA+AGG + chr1_3:24563778-24563797 None:intergenic 25.0%
! CAGAGATATAGACATAAATA+GGG + chr1_3:24563821-24563840 None:intergenic 25.0%
! TCAGAGATATAGACATAAAT+AGG + chr1_3:24563822-24563841 None:intergenic 25.0%
! TATCTCTGATGTATGTAATT+AGG - chr1_3:24563833-24563852 Msa0111080:CDS 25.0%
! AATATGTAGACTTGAGAATA+AGG + chr1_3:24564015-24564034 None:intergenic 25.0%
!!! TTTTAGTTTAGGACAAAAGA+TGG - chr1_3:24564226-24564245 Msa0111080:CDS 25.0%
!! TTTAGTTTAGGACAAAAGAT+GGG - chr1_3:24564227-24564246 Msa0111080:CDS 25.0%
! ACATATCAAGAATGTTTAGA+AGG + chr1_3:24564300-24564319 None:intergenic 25.0%
! TTCTAAACATTCTTGATATG+TGG - chr1_3:24564299-24564318 Msa0111080:CDS 25.0%
! ACAGTGAAAAAACACAAAAA+GGG + chr1_3:24564426-24564445 None:intergenic 25.0%
! AACAGTGAAAAAACACAAAA+AGG + chr1_3:24564427-24564446 None:intergenic 25.0%
! AGAAGAACAAATCAAAGAAA+GGG - chr1_3:24564812-24564831 Msa0111080:intron 25.0%
!! ATGACTTTTCCAAACAAATA+TGG + chr1_3:24564943-24564962 None:intergenic 25.0%
! GCAATTATAGTTGAGTTAAT+GGG + chr1_3:24565074-24565093 None:intergenic 25.0%
! TGCAATTATAGTTGAGTTAA+TGG + chr1_3:24565075-24565094 None:intergenic 25.0%
!! CTTTGAAGTAGGAAACAAAA+AGG + chr1_3:24559668-24559687 None:intergenic 30.0%
!! CTTTTTGTTTCCTACTTCAA+AGG - chr1_3:24559666-24559685 Msa0111080:three_prime_UTR 30.0%
! GGTTATAATCCCTTGATTTT+TGG - chr1_3:24559687-24559706 Msa0111080:three_prime_UTR 30.0%
! TAAGTTACTAACCTTGGTTT+TGG + chr1_3:24559737-24559756 None:intergenic 30.0%
!! AGAAAGAAAAGTATCAAGTG+GGG + chr1_3:24559800-24559819 None:intergenic 30.0%
! AATTGCTAAATGGGTCATTT+TGG - chr1_3:24559861-24559880 Msa0111080:CDS 30.0%
!!! AAATGGGTCATTTTGGTTTT+TGG - chr1_3:24559868-24559887 Msa0111080:CDS 30.0%
TTCACTTGGCTGTTAAATTA+GGG - chr1_3:24560288-24560307 Msa0111080:intron 30.0%
ACACTTACAAGATTTGGAAA+AGG - chr1_3:24560588-24560607 Msa0111080:intron 30.0%
CACTTACAAGATTTGGAAAA+GGG - chr1_3:24560589-24560608 Msa0111080:intron 30.0%
ACTTACAAGATTTGGAAAAG+GGG - chr1_3:24560590-24560609 Msa0111080:intron 30.0%
!! GATCAAAGTGTTCTTTTTCT+TGG - chr1_3:24560674-24560693 Msa0111080:intron 30.0%
ATTCCTATTGAAGATGGTAA+CGG - chr1_3:24561187-24561206 Msa0111080:intron 30.0%
GAAAATAAGCAGGAAAAGAA+AGG - chr1_3:24561223-24561242 Msa0111080:intron 30.0%
AGAATTTACAGAAGAAGCTT+TGG + chr1_3:24561449-24561468 None:intergenic 30.0%
TTTGCAACAATGTCAAGTAA+TGG + chr1_3:24561586-24561605 None:intergenic 30.0%
ACTTACAACAAAACTTCCAA+TGG - chr1_3:24561639-24561658 Msa0111080:intron 30.0%
CTTACAACAAAACTTCCAAT+GGG - chr1_3:24561640-24561659 Msa0111080:intron 30.0%
! GTAACAAGCAAGAGTATAAT+TGG + chr1_3:24561794-24561813 None:intergenic 30.0%
CAAGAAATAGACAGAGAAAA+GGG - chr1_3:24562048-24562067 Msa0111080:intron 30.0%
AAGAAATAGACAGAGAAAAG+GGG - chr1_3:24562049-24562068 Msa0111080:intron 30.0%
AAGCTAATTAGATGAAATGG+AGG + chr1_3:24562373-24562392 None:intergenic 30.0%
!! TCCCATTTTGATAAGGTAAA+AGG + chr1_3:24562545-24562564 None:intergenic 30.0%
! TAGTGGACAAATGAATATTC+TGG + chr1_3:24562756-24562775 None:intergenic 30.0%
CGACGAAGTAACAAAAATTT+CGG + chr1_3:24562864-24562883 None:intergenic 30.0%
!! TTTTTGTTACTTCGTCGTAT+TGG - chr1_3:24562867-24562886 Msa0111080:intron 30.0%
! AGTTGTTTCAGAAGAAGAAA+AGG + chr1_3:24562959-24562978 None:intergenic 30.0%
CCATATAATATCACCTTAAC+AGG + chr1_3:24563325-24563344 None:intergenic 30.0%
CCTGTTAAGGTGATATTATA+TGG - chr1_3:24563322-24563341 Msa0111080:CDS 30.0%
!!! CTAGGTATTAGTTTTGCTTT+AGG - chr1_3:24563552-24563571 Msa0111080:CDS 30.0%
! TTTCGTTTTCAACAACCATT+TGG - chr1_3:24563639-24563658 Msa0111080:CDS 30.0%
CTAACTTACAAATCACCAAA+TGG + chr1_3:24563657-24563676 None:intergenic 30.0%
! CATTTGGTGATTTGTAAGTT+AGG - chr1_3:24563655-24563674 Msa0111080:CDS 30.0%
!!! TTTTGTTGTTTAAGCTCTTG+AGG - chr1_3:24563743-24563762 Msa0111080:CDS 30.0%
TGATGCAACTAGATAGATAT+AGG - chr1_3:24563886-24563905 Msa0111080:CDS 30.0%
!! TCATTGGCATTGATAAGTTT+GGG + chr1_3:24564096-24564115 None:intergenic 30.0%
!! ATCATTGGCATTGATAAGTT+TGG + chr1_3:24564097-24564116 None:intergenic 30.0%
!!! GGTCTTATTGGTTTTAGTTT+AGG - chr1_3:24564215-24564234 Msa0111080:CDS 30.0%
! AGGAATGAGGTTTAATTTCA+AGG + chr1_3:24564280-24564299 None:intergenic 30.0%
AAGAATGTTTAGAAGGAATG+AGG + chr1_3:24564293-24564312 None:intergenic 30.0%
! TTTCAATGCATTTTTCCATG+TGG - chr1_3:24564370-24564389 Msa0111080:CDS 30.0%
AGTGAAAAAACACAAAAAGG+GGG + chr1_3:24564424-24564443 None:intergenic 30.0%
CAGTGAAAAAACACAAAAAG+GGG + chr1_3:24564425-24564444 None:intergenic 30.0%
AATTCCACCAGATTATACTT+GGG - chr1_3:24564756-24564775 Msa0111080:intron 30.0%
GAGAAGAACAAATCAAAGAA+AGG - chr1_3:24564811-24564830 Msa0111080:intron 30.0%
AAGTGAGATCCAAACAAATA+TGG + chr1_3:24564892-24564911 None:intergenic 30.0%
TTTGGAAAAGTCATAAAGCT+AGG - chr1_3:24564949-24564968 Msa0111080:five_prime_UTR 30.0%
ATAAAAGGGATGAAACATTG+TGG - chr1_3:24565003-24565022 Msa0111080:five_prime_UTR 30.0%
GAAGTTGTGAATGTTGGAAA+AGG + chr1_3:24559400-24559419 None:intergenic 35.0%
AAAGAGGAAGTTGTGAATGT+TGG + chr1_3:24559406-24559425 None:intergenic 35.0%
TTCCTCTTTCTTTCTTCCTT+TGG - chr1_3:24559417-24559436 Msa0111080:three_prime_UTR 35.0%
TCTTTCTTTCTTCCTTTGGT+GGG - chr1_3:24559421-24559440 Msa0111080:three_prime_UTR 35.0%
!! GGGATTATAACCTTTGAAGT+AGG + chr1_3:24559679-24559698 None:intergenic 35.0%
TGGATTATTCTGCAAGTTTG+TGG - chr1_3:24559933-24559952 Msa0111080:CDS 35.0%
GTGATTGTGATTGTTAGTGT+TGG - chr1_3:24559996-24560015 Msa0111080:CDS 35.0%
!! TTGTGATTGTTAGTGTTGGT+TGG - chr1_3:24560000-24560019 Msa0111080:CDS 35.0%
!! GCTGTGATTTTGAAGGATTA+TGG - chr1_3:24560116-24560135 Msa0111080:intron 35.0%
TTTACCTAAGCTGTGTAATG+TGG - chr1_3:24560163-24560182 Msa0111080:intron 35.0%
TTACCTAAGCTGTGTAATGT+GGG - chr1_3:24560164-24560183 Msa0111080:intron 35.0%
!! TTCGATTTTAGAGGAAGAGA+AGG - chr1_3:24560208-24560227 Msa0111080:intron 35.0%
AATTTAACAGCCAAGTGAAG+AGG + chr1_3:24560287-24560306 None:intergenic 35.0%
CTTCACTTGGCTGTTAAATT+AGG - chr1_3:24560287-24560306 Msa0111080:intron 35.0%
TCACTTGGCTGTTAAATTAG+GGG - chr1_3:24560289-24560308 Msa0111080:intron 35.0%
TGTTAAATTAGGGGATGAAG+CGG - chr1_3:24560298-24560317 Msa0111080:intron 35.0%
! GAGGATGAGAGACTTTTATA+TGG - chr1_3:24560505-24560524 Msa0111080:intron 35.0%
CTGTGATACCTTTCATTTCA+AGG - chr1_3:24560552-24560571 Msa0111080:intron 35.0%
CAAATCTTGTAAGTGTCTGA+AGG + chr1_3:24560584-24560603 None:intergenic 35.0%
CTTCAGACACTTACAAGATT+TGG - chr1_3:24560582-24560601 Msa0111080:intron 35.0%
! AGTGTTCTTTTTCTTGGTGA+TGG - chr1_3:24560680-24560699 Msa0111080:intron 35.0%
AAACAGAAATGGTAGGATCT+TGG - chr1_3:24560918-24560937 Msa0111080:intron 35.0%
ATAAAATCTAGAGGAGTTCC+TGG - chr1_3:24560980-24560999 Msa0111080:intron 35.0%
ATCGTTAAGTTCTTCACTCT+CGG + chr1_3:24561053-24561072 None:intergenic 35.0%
! TTTTGACCGAAGATGAAAGA+AGG - chr1_3:24561074-24561093 Msa0111080:intron 35.0%
CAATTGCCTTCTTTCATCTT+CGG + chr1_3:24561083-24561102 None:intergenic 35.0%
! ACTGAACAATGATAGTGATG+AGG - chr1_3:24561132-24561151 Msa0111080:intron 35.0%
! CTGAACAATGATAGTGATGA+GGG - chr1_3:24561133-24561152 Msa0111080:intron 35.0%
! TGAACAATGATAGTGATGAG+GGG - chr1_3:24561134-24561153 Msa0111080:intron 35.0%
!! ATAGGAATGTCTCTAAAGCT+TGG + chr1_3:24561175-24561194 None:intergenic 35.0%
AGAGACATTCCTATTGAAGA+TGG - chr1_3:24561181-24561200 Msa0111080:intron 35.0%
! CAATAGTGGAGAAAATAAGC+AGG - chr1_3:24561213-24561232 Msa0111080:intron 35.0%
ATAAGCAGGAAAAGAAAGGA+TGG - chr1_3:24561227-24561246 Msa0111080:intron 35.0%
TTCTCTTTGCGTAGATGAAA+AGG - chr1_3:24561318-24561337 Msa0111080:intron 35.0%
TGAAAAGGTGAGCGATTTAT+TGG - chr1_3:24561333-24561352 Msa0111080:intron 35.0%
GAAAAGGTGAGCGATTTATT+GGG - chr1_3:24561334-24561353 Msa0111080:intron 35.0%
TTAACAGGAAAAGTTCCCAT+TGG + chr1_3:24561658-24561677 None:intergenic 35.0%
! AATGGGAACTTTTCCTGTTA+AGG - chr1_3:24561657-24561676 Msa0111080:intron 35.0%
CATGCATGTTATGAAAAAGC+AGG - chr1_3:24561830-24561849 Msa0111080:intron 35.0%
CATGTTATGAAAAAGCAGGA+CGG - chr1_3:24561834-24561853 Msa0111080:intron 35.0%
ATTAGGAACATGTGGGTAAA+AGG - chr1_3:24562016-24562035 Msa0111080:intron 35.0%
TTAGGAACATGTGGGTAAAA+GGG - chr1_3:24562017-24562036 Msa0111080:intron 35.0%
GCAAGAAATAGACAGAGAAA+AGG - chr1_3:24562047-24562066 Msa0111080:intron 35.0%
GAGAAGATAACAGTACTATG+AGG - chr1_3:24562077-24562096 Msa0111080:intron 35.0%
GAGGAACATAATAGAAGAGT+AGG - chr1_3:24562096-24562115 Msa0111080:intron 35.0%
GCATAAGCTAAAAGTGGTAA+AGG + chr1_3:24562250-24562269 None:intergenic 35.0%
!!! TTGTAGCACCGATGTTTTAT+GGG - chr1_3:24562295-24562314 Msa0111080:intron 35.0%
!! GTTCAACTCCCATTTTGATA+AGG + chr1_3:24562552-24562571 None:intergenic 35.0%
TATATAGTTAATGACCCCTG+TGG - chr1_3:24562661-24562680 Msa0111080:intron 35.0%
ATATAGTTAATGACCCCTGT+GGG - chr1_3:24562662-24562681 Msa0111080:intron 35.0%
AAACAAGAAACAGCAGGAAA+AGG + chr1_3:24562894-24562913 None:intergenic 35.0%
GAAAAGGAGAGGTAAATACA+TGG + chr1_3:24562943-24562962 None:intergenic 35.0%
TTTCAGAAGAAGAAAAGGAG+AGG + chr1_3:24562954-24562973 None:intergenic 35.0%
CAAGAAAGAAACTTCGATCA+CGG + chr1_3:24563108-24563127 None:intergenic 35.0%
!! GTCTTTGTGTCACTTTGATT+TGG - chr1_3:24563266-24563285 Msa0111080:CDS 35.0%
TACACATTGGTACTCTAGTA+AGG + chr1_3:24563295-24563314 None:intergenic 35.0%
ATACATCTACTTACCTTTCC+TGG - chr1_3:24563347-24563366 Msa0111080:CDS 35.0%
TCCTGCATTGTTACTCATTA+AGG - chr1_3:24563381-24563400 Msa0111080:CDS 35.0%
TCCTTAATGAGTAACAATGC+AGG + chr1_3:24563385-24563404 None:intergenic 35.0%
AAATCCTTCCTACACATTCT+AGG - chr1_3:24563589-24563608 Msa0111080:CDS 35.0%
AATCCTTCCTACACATTCTA+GGG - chr1_3:24563590-24563609 Msa0111080:CDS 35.0%
TAGAAAACCCTAGAATGTGT+AGG + chr1_3:24563600-24563619 None:intergenic 35.0%
CCAACAAAGTTTCTGATCAT+TGG + chr1_3:24564112-24564131 None:intergenic 35.0%
CCAATGATCAGAAACTTTGT+TGG - chr1_3:24564109-24564128 Msa0111080:CDS 35.0%
! GATGTATGTGAAGAGTATGA+TGG + chr1_3:24564181-24564200 None:intergenic 35.0%
TACTCTTCACATACATCTCT+TGG - chr1_3:24564184-24564203 Msa0111080:CDS 35.0%
ACTCTTCACATACATCTCTT+GGG - chr1_3:24564185-24564204 Msa0111080:CDS 35.0%
!!! GGAGGGTTTTAAAACATCAT+AGG - chr1_3:24564394-24564413 Msa0111080:CDS 35.0%
AAAAGTGACCAATACTCTGA+TGG + chr1_3:24564536-24564555 None:intergenic 35.0%
CAAATTTCTCTGCTTCATCT+TGG - chr1_3:24564644-24564663 Msa0111080:five_prime_UTR 35.0%
ATCTTGGTTTCAGTGGATAA+AGG - chr1_3:24564660-24564679 Msa0111080:five_prime_UTR 35.0%
! ATTTTCTATCCTACTACTGC+TGG + chr1_3:24564719-24564738 None:intergenic 35.0%
TAATCTGGTGGAATTGCAAA+CGG + chr1_3:24564751-24564770 None:intergenic 35.0%
CAATTCCACCAGATTATACT+TGG - chr1_3:24564755-24564774 Msa0111080:intron 35.0%
ATATGGCAGCTTCTATTCAA+TGG + chr1_3:24564875-24564894 None:intergenic 35.0%
TAGAAGCTGCCATATTTGTT+TGG - chr1_3:24564880-24564899 Msa0111080:five_prime_UTR 35.0%
ATATGGCAGCTTCTATTCAA+TGG + chr1_3:24564875-24564894 None:intergenic 35.0%
TAGAAGCTGCCATATTTGTT+TGG - chr1_3:24564880-24564899 Msa0111080:five_prime_UTR 35.0%
CACCAAAGGAAGAAAGAAAG+AGG + chr1_3:24559422-24559441 None:intergenic 40.0%
CTCTTTCTTTCTTCCTTTGG+TGG - chr1_3:24559420-24559439 Msa0111080:three_prime_UTR 40.0%
CTTTCTTTCTTCCTTTGGTG+GGG - chr1_3:24559422-24559441 Msa0111080:three_prime_UTR 40.0%
GTTTGAGAGAGAGAAAGAGA+GGG + chr1_3:24559470-24559489 None:intergenic 40.0%
TGTTTGAGAGAGAGAAAGAG+AGG + chr1_3:24559471-24559490 None:intergenic 40.0%
CATTGGACAAACCAAAACCA+AGG - chr1_3:24559723-24559742 Msa0111080:exon 40.0%
!!! ATAGGTACCTTTTTCAGTGC+TGG - chr1_3:24559909-24559928 Msa0111080:CDS 40.0%
! AATCCAACCAGCACTGAAAA+AGG + chr1_3:24559919-24559938 None:intergenic 40.0%
! AAAATCACAGCCTTATGCAC+AGG + chr1_3:24560107-24560126 None:intergenic 40.0%
! GCATAAGGCTGTGATTTTGA+AGG - chr1_3:24560109-24560128 Msa0111080:intron 40.0%
AGGATTATGGTGAGCTTAAG+AGG - chr1_3:24560129-24560148 Msa0111080:intron 40.0%
GTGAGCTTAAGAGGATACTT+GGG - chr1_3:24560138-24560157 Msa0111080:intron 40.0%
TGAGCTTAAGAGGATACTTG+GGG - chr1_3:24560139-24560158 Msa0111080:intron 40.0%
TAATGTGGGTGAGATTCGTA+CGG - chr1_3:24560178-24560197 Msa0111080:intron 40.0%
CAATCTCTGCTGTGATTGAT+AGG - chr1_3:24560237-24560256 Msa0111080:intron 40.0%
GCTGAAATGCTTATGGTTGT+TGG - chr1_3:24560323-24560342 Msa0111080:intron 40.0%
!! TTATGGTTGTTGGTGCTGAT+TGG - chr1_3:24560333-24560352 Msa0111080:intron 40.0%
TGGAGTTTGCAGAATGAACA+AGG - chr1_3:24560353-24560372 Msa0111080:intron 40.0%
GGAGTTTGCAGAATGAACAA+GGG - chr1_3:24560354-24560373 Msa0111080:intron 40.0%
GGTGCAATCCTTGAAATGAA+AGG + chr1_3:24560563-24560582 None:intergenic 40.0%
!!! TTTTCTTGGTGATGGTTCAG+AGG - chr1_3:24560688-24560707 Msa0111080:intron 40.0%
CATGATCTCACACAAGGAAA+AGG - chr1_3:24560739-24560758 Msa0111080:intron 40.0%
!!! TCTAGATGATGCTGCTTTTG+CGG - chr1_3:24560775-24560794 Msa0111080:intron 40.0%
! TTCTTTTGCCTCAGTTGACT+TGG - chr1_3:24560882-24560901 Msa0111080:intron 40.0%
! CTACCATTTCTGTTTTCTCC+TGG + chr1_3:24560913-24560932 None:intergenic 40.0%
CAGGAGAAAACAGAAATGGT+AGG - chr1_3:24560911-24560930 Msa0111080:intron 40.0%
CGAAGATGAAAGAAGGCAAT+TGG - chr1_3:24561081-24561100 Msa0111080:intron 40.0%
AGATGAAAGAAGGCAATTGG+AGG - chr1_3:24561084-24561103 Msa0111080:intron 40.0%
CTACCGTTACCATCTTCAAT+AGG + chr1_3:24561193-24561212 None:intergenic 40.0%
CAGGAAAAGAAAGGATGGTT+TGG - chr1_3:24561232-24561251 Msa0111080:intron 40.0%
! GAAAAGAAAGGATGGTTTGG+TGG - chr1_3:24561235-24561254 Msa0111080:intron 40.0%
TCTACGCAAAGAGAACTTCT+TGG + chr1_3:24561313-24561332 None:intergenic 40.0%
ATTCTGTTGAGGTTGTTGTG+AGG - chr1_3:24561395-24561414 Msa0111080:intron 40.0%
TTCTGTTGAGGTTGTTGTGA+GGG - chr1_3:24561396-24561415 Msa0111080:intron 40.0%
AGCAGAAGTCGTCATAAAGA+TGG - chr1_3:24561475-24561494 Msa0111080:intron 40.0%
AAGGATTGAGGCCTATTCTT+TGG - chr1_3:24561521-24561540 Msa0111080:intron 40.0%
TTTGGCGAAAGCCAAAGAAT+AGG + chr1_3:24561535-24561554 None:intergenic 40.0%
TGCATGCTACAGCATAAGTA+GGG + chr1_3:24561816-24561835 None:intergenic 40.0%
ATGCATGCTACAGCATAAGT+AGG + chr1_3:24561817-24561836 None:intergenic 40.0%
! ACCACCTTAATCTGAAGTGT+CGG - chr1_3:24561957-24561976 Msa0111080:intron 40.0%
ATATCATGCATGCCATGTGT+TGG - chr1_3:24561986-24562005 Msa0111080:intron 40.0%
!! CCTATGGATTAGGAACATGT+GGG - chr1_3:24562009-24562028 Msa0111080:intron 40.0%
ATAGACAGAGAAAAGGGGTA+AGG - chr1_3:24562054-24562073 Msa0111080:intron 40.0%
TAGACAGAGAAAAGGGGTAA+GGG - chr1_3:24562055-24562074 Msa0111080:intron 40.0%
TAGAAGAGTAGGTGTGTTCT+TGG - chr1_3:24562107-24562126 Msa0111080:intron 40.0%
AGAAGAGTAGGTGTGTTCTT+GGG - chr1_3:24562108-24562127 Msa0111080:intron 40.0%
AGCTAAAAGTGGTAAAGGTG+AGG + chr1_3:24562245-24562264 None:intergenic 40.0%
!! AAACATCGGTGCTACAAGTT+GGG + chr1_3:24562292-24562311 None:intergenic 40.0%
!! AAAACATCGGTGCTACAAGT+TGG + chr1_3:24562293-24562312 None:intergenic 40.0%
!!! CTTGTAGCACCGATGTTTTA+TGG - chr1_3:24562294-24562313 Msa0111080:intron 40.0%
! ACCGATGTTTTATGGGTATG+CGG - chr1_3:24562302-24562321 Msa0111080:intron 40.0%
ACCGCATACCCATAAAACAT+CGG + chr1_3:24562306-24562325 None:intergenic 40.0%
TGGGTATGCGGTAAAATTAG+TGG - chr1_3:24562314-24562333 Msa0111080:intron 40.0%
TCTTGCTCCAGAATATTGTC+TGG - chr1_3:24562780-24562799 Msa0111080:intron 40.0%
CAATGCAAACAAGAAACAGC+AGG + chr1_3:24562900-24562919 None:intergenic 40.0%
!! GTGAGTTCTTTTTCACGTAG+AGG - chr1_3:24563048-24563067 Msa0111080:CDS 40.0%
!!! CACTCACGAGTTTTGGTTTT+CGG + chr1_3:24563166-24563185 None:intergenic 40.0%
AACCAAAACTCGTGAGTGAA+TGG - chr1_3:24563168-24563187 Msa0111080:CDS 40.0%
! TTCCATTCACTCACGAGTTT+TGG + chr1_3:24563173-24563192 None:intergenic 40.0%
AAACCCTAGAATGTGTAGGA+AGG + chr1_3:24563596-24563615 None:intergenic 40.0%
! CAATGCATTTTTCCATGTGG+TGG - chr1_3:24564373-24564392 Msa0111080:CDS 40.0%
!!! TTTTAAAACCCTCCACCACA+TGG + chr1_3:24564388-24564407 None:intergenic 40.0%
GTGACTCTTTCTGCATATTC+AGG - chr1_3:24564489-24564508 Msa0111080:CDS 40.0%
! GGTGTTGCGAATTCATCTAA+TGG + chr1_3:24564580-24564599 None:intergenic 40.0%
AATCTGGTGGAATTGCAAAC+GGG + chr1_3:24564750-24564769 None:intergenic 40.0%
ATGATCTCACTTCACTTCAG+TGG - chr1_3:24564849-24564868 Msa0111080:five_prime_UTR 40.0%
GCTAGGATTTGATTCTCCAA+TGG - chr1_3:24564966-24564985 Msa0111080:five_prime_UTR 40.0%
TGTTGTGCTGCAGCATAAAA+GGG - chr1_3:24564989-24565008 Msa0111080:five_prime_UTR 40.0%
AAAGAGAGAAACCCCACCAA+AGG + chr1_3:24559436-24559455 None:intergenic 45.0%
CAATCCAGATCAGACAAGCA+TGG + chr1_3:24559620-24559639 None:intergenic 45.0%
CATGCTTGTCTGATCTGGAT+TGG - chr1_3:24559618-24559637 Msa0111080:three_prime_UTR 45.0%
! CTGATCTGGATTGGATCACA+AGG - chr1_3:24559627-24559646 Msa0111080:three_prime_UTR 45.0%
!!! GTACCTTTTTCAGTGCTGGT+TGG - chr1_3:24559913-24559932 Msa0111080:CDS 45.0%
CAAGTTTGTGGTGACCCTAT+TGG - chr1_3:24559945-24559964 Msa0111080:CDS 45.0%
!! ATCCATCCCTTGTGCTGTTT+AGG - chr1_3:24560044-24560063 Msa0111080:CDS 45.0%
TACCTAAACAGCACAAGGGA+TGG + chr1_3:24560049-24560068 None:intergenic 45.0%
!! TCCCTTGTGCTGTTTAGGTA+TGG - chr1_3:24560049-24560068 Msa0111080:CDS 45.0%
GCCATACCTAAACAGCACAA+GGG + chr1_3:24560053-24560072 None:intergenic 45.0%
TGCCATACCTAAACAGCACA+AGG + chr1_3:24560054-24560073 None:intergenic 45.0%
!! TTGTGCTGTTTAGGTATGGC+AGG - chr1_3:24560053-24560072 Msa0111080:intron 45.0%
!! TGTGCTGTTTAGGTATGGCA+GGG - chr1_3:24560054-24560073 Msa0111080:intron 45.0%
GGGATCGATGTTGCAAAGTT+TGG - chr1_3:24560074-24560093 Msa0111080:intron 45.0%
TGGTCATAGTCCTGTGCATA+AGG - chr1_3:24560094-24560113 Msa0111080:intron 45.0%
GGTGAGCTTAAGAGGATACT+TGG - chr1_3:24560137-24560156 Msa0111080:intron 45.0%
GAGCTTAAGAGGATACTTGG+GGG - chr1_3:24560140-24560159 Msa0111080:intron 45.0%
TCACCCACATTACACAGCTT+AGG + chr1_3:24560170-24560189 None:intergenic 45.0%
! GGAAGCGGTTTCGATTTTAG+AGG - chr1_3:24560199-24560218 Msa0111080:intron 45.0%
!! TGAAGAGGAGTATCGCGATT+CGG + chr1_3:24560272-24560291 None:intergenic 45.0%
GTTTGCAGAATGAACAAGGG+TGG - chr1_3:24560357-24560376 Msa0111080:intron 45.0%
AGCATTATCAGCCTCTTGCT+TGG - chr1_3:24560438-24560457 Msa0111080:intron 45.0%
GCATTATCAGCCTCTTGCTT+GGG - chr1_3:24560439-24560458 Msa0111080:intron 45.0%
CTTGGGCAAAATGGTGTAGA+AGG - chr1_3:24560456-24560475 Msa0111080:intron 45.0%
! GAAAAGGGGTGCGAATCTAA+GGG - chr1_3:24560604-24560623 Msa0111080:intron 45.0%
TCTAAGGGCTGACATGACTT+TGG - chr1_3:24560619-24560638 Msa0111080:intron 45.0%
!! ATGACTTTGGCTGGTTTCGA+CGG - chr1_3:24560632-24560651 Msa0111080:intron 45.0%
!! TTGGTGATGGTTCAGAGGAT+GGG - chr1_3:24560693-24560712 Msa0111080:intron 45.0%
TGAGATCATGCAGAGTGATC+CGG + chr1_3:24560729-24560748 None:intergenic 45.0%
ACTCTGCATGATCTCACACA+AGG - chr1_3:24560733-24560752 Msa0111080:intron 45.0%
GATCTCACACAAGGAAAAGG+AGG - chr1_3:24560742-24560761 Msa0111080:intron 45.0%
!! GCCTGGTATTGATGTTACTC+AGG - chr1_3:24560856-24560875 Msa0111080:intron 45.0%
GCCTGAGTAACATCAATACC+AGG + chr1_3:24560860-24560879 None:intergenic 45.0%
!!! TTTTGCCTCAGTTGACTTGG+AGG - chr1_3:24560885-24560904 Msa0111080:intron 45.0%
GGTAGGATCTTGGAAAGCTA+AGG - chr1_3:24560928-24560947 Msa0111080:intron 45.0%
ATTGGAGGATGCACTTAAGC+TGG - chr1_3:24561099-24561118 Msa0111080:intron 45.0%
!! GATGGTAACGGTAGCAATAG+TGG - chr1_3:24561199-24561218 Msa0111080:intron 45.0%
!! AGAAAGGATGGTTTGGTGGA+TGG - chr1_3:24561239-24561258 Msa0111080:intron 45.0%
ACGCAAAGAGAACTTCTTGG+TGG + chr1_3:24561310-24561329 None:intergenic 45.0%
TCTGTTGAGGTTGTTGTGAG+GGG - chr1_3:24561397-24561416 Msa0111080:intron 45.0%
! TAACGTGTCGATGTTGTGTC+TGG + chr1_3:24561863-24561882 None:intergenic 45.0%
ACCGACACTTCAGATTAAGG+TGG + chr1_3:24561961-24561980 None:intergenic 45.0%
!! AGCACCGACACTTCAGATTA+AGG + chr1_3:24561964-24561983 None:intergenic 45.0%
CTAATCCATAGGCCAACACA+TGG + chr1_3:24562001-24562020 None:intergenic 45.0%
! CATGTGTTGGCCTATGGATT+AGG - chr1_3:24561999-24562018 Msa0111080:intron 45.0%
!! GCCTATGGATTAGGAACATG+TGG - chr1_3:24562008-24562027 Msa0111080:intron 45.0%
CCCACATGTTCCTAATCCAT+AGG + chr1_3:24562012-24562031 None:intergenic 45.0%
! GCAAGGGCATAAGCTAAAAG+TGG + chr1_3:24562256-24562275 None:intergenic 45.0%
GGGTAGTAAAGAGCTAGCAA+GGG + chr1_3:24562272-24562291 None:intergenic 45.0%
TGGGTAGTAAAGAGCTAGCA+AGG + chr1_3:24562273-24562292 None:intergenic 45.0%
!! TTCTGGAGCAAGAAGAGTAG+TGG + chr1_3:24562773-24562792 None:intergenic 45.0%
GGTAATAAGTGGGAGAGTAG+TGG + chr1_3:24562843-24562862 None:intergenic 45.0%
! GTAGAGGAGTGTGCTTTAAG+AGG - chr1_3:24563064-24563083 Msa0111080:CDS 45.0%
GAAGCTACTGAATCCAGGAA+AGG + chr1_3:24563363-24563382 None:intergenic 45.0%
!! ATACATCTCTTGGGCTAGCT+TGG - chr1_3:24564194-24564213 Msa0111080:CDS 45.0%
!! TTGGGCTAGCTTGGTCTTAT+TGG - chr1_3:24564203-24564222 Msa0111080:CDS 45.0%
! TGCATTTTTCCATGTGGTGG+AGG - chr1_3:24564376-24564395 Msa0111080:CDS 45.0%
!! GCATTTTTCCATGTGGTGGA+GGG - chr1_3:24564377-24564396 Msa0111080:CDS 45.0%
!! TATTCAGGTTGCCATTCCTG+TGG - chr1_3:24564504-24564523 Msa0111080:exon 45.0%
GTGACCAATACTCTGATGGT+GGG + chr1_3:24564532-24564551 None:intergenic 45.0%
AGTGACCAATACTCTGATGG+TGG + chr1_3:24564533-24564552 None:intergenic 45.0%
CAGAGAAATTTGTCGCTGCA+GGG + chr1_3:24564636-24564655 None:intergenic 45.0%
CTGCTTCATCTTGGTTTCAG+TGG - chr1_3:24564653-24564672 Msa0111080:five_prime_UTR 45.0%
AACCTGCAGCAGATGAACTA+GGG + chr1_3:24564696-24564715 None:intergenic 45.0%
GTGACCCAAGTATAATCTGG+TGG + chr1_3:24564763-24564782 None:intergenic 45.0%
GCAGTGACCCAAGTATAATC+TGG + chr1_3:24564766-24564785 None:intergenic 45.0%
TGGATCTCACTTCACTTCAG+TGG - chr1_3:24564900-24564919 Msa0111080:five_prime_UTR 45.0%
GTGTTGTGCTGCAGCATAAA+AGG - chr1_3:24564988-24565007 Msa0111080:five_prime_UTR 45.0%
!! ATAAATAAATAAATACAAAA+GGG + chr1_3:24559526-24559545 None:intergenic 5.0%
!! AATAAATAAATAAATACAAA+AGG + chr1_3:24559527-24559546 None:intergenic 5.0%
CTCTCCATGCTTGTCTGATC+TGG - chr1_3:24559613-24559632 Msa0111080:three_prime_UTR 50.0%
CAAGTGGGGTCACAGATCAA+GGG + chr1_3:24559786-24559805 None:intergenic 50.0%
TCAAGTGGGGTCACAGATCA+AGG + chr1_3:24559787-24559806 None:intergenic 50.0%
TCGCGATACTCCTCTTCACT+TGG - chr1_3:24560274-24560293 Msa0111080:intron 50.0%
AGCGGCTGCTGAAATGCTTA+TGG - chr1_3:24560316-24560335 Msa0111080:intron 50.0%
AGCCTCTTGCTTGGGCAAAA+TGG - chr1_3:24560447-24560466 Msa0111080:intron 50.0%
! CACCATTTTGCCCAAGCAAG+AGG + chr1_3:24560452-24560471 None:intergenic 50.0%
GTGTAGAAGGTTGCCTCGTT+TGG - chr1_3:24560469-24560488 Msa0111080:intron 50.0%
! GGAAAAGGGGTGCGAATCTA+AGG - chr1_3:24560603-24560622 Msa0111080:intron 50.0%
!! CTTGGTGATGGTTCAGAGGA+TGG - chr1_3:24560692-24560711 Msa0111080:intron 50.0%
GAGATCATGCAGAGTGATCC+GGG + chr1_3:24560728-24560747 None:intergenic 50.0%
GCGCCAGGAGAAAACAGAAA+TGG - chr1_3:24560907-24560926 Msa0111080:intron 50.0%
TCATCGTCTGTCATAGCTCC+AGG + chr1_3:24561001-24561020 None:intergenic 50.0%
ACCAGGGAGACATTCTGTTG+AGG - chr1_3:24561384-24561403 Msa0111080:intron 50.0%
ACCTCAACAGAATGTCTCCC+TGG + chr1_3:24561388-24561407 None:intergenic 50.0%
!! GAGCAAGCACTGACCTTAAC+AGG + chr1_3:24561673-24561692 None:intergenic 50.0%
CTAAGCAGTCAGCACAAAGG+AGG + chr1_3:24562637-24562656 None:intergenic 50.0%
GAGCTAAGCAGTCAGCACAA+AGG + chr1_3:24562640-24562659 None:intergenic 50.0%
TGCAGGAAGCTACTGAATCC+AGG + chr1_3:24563368-24563387 None:intergenic 50.0%
GGTTCCCACCATCAGAGTAT+TGG - chr1_3:24564525-24564544 Msa0111080:five_prime_UTR 50.0%
! CCTGACATGGATGGACTTGT+CGG + chr1_3:24564604-24564623 None:intergenic 50.0%
GCAGAGAAATTTGTCGCTGC+AGG + chr1_3:24564637-24564656 None:intergenic 50.0%
GAACCTGCAGCAGATGAACT+AGG + chr1_3:24564697-24564716 None:intergenic 50.0%
ATGCTGCAGCACAACACCAT+TGG + chr1_3:24564985-24565004 None:intergenic 50.0%
GGGTGAGATTCGTACGGAAG+CGG - chr1_3:24560184-24560203 Msa0111080:intron 55.0%
CACATCGTCGCTACCAAACG+AGG + chr1_3:24560485-24560504 None:intergenic 55.0%
!! CTCGTTTGGTAGCGACGATG+TGG - chr1_3:24560483-24560502 Msa0111080:intron 55.0%
!! GTTTGGTAGCGACGATGTGG+AGG - chr1_3:24560486-24560505 Msa0111080:intron 55.0%
AGGGCTGACATGACTTTGGC+TGG - chr1_3:24560623-24560642 Msa0111080:intron 55.0%
TTGTGAGGGGCGATGAGCAA+CGG - chr1_3:24561410-24561429 Msa0111080:intron 55.0%
! GCATGCCATGTGTTGGCCTA+TGG - chr1_3:24561993-24562012 Msa0111080:intron 55.0%
!! GATGGTGGGAACCACAGGAA+TGG + chr1_3:24564518-24564537 None:intergenic 55.0%
!! ACTCTGATGGTGGGAACCAC+AGG + chr1_3:24564523-24564542 None:intergenic 55.0%
! GACATGGATGGACTTGTCGG+CGG + chr1_3:24564601-24564620 None:intergenic 55.0%
CCGACAAGTCCATCCATGTC+AGG - chr1_3:24564601-24564620 Msa0111080:five_prime_UTR 55.0%
CTCTCTTCGCCTGACATGGA+TGG + chr1_3:24564613-24564632 None:intergenic 55.0%
GCAGATGAACTAGGGCGGTA+TGG + chr1_3:24564688-24564707 None:intergenic 55.0%
CTGCAGCAGATGAACTAGGG+CGG + chr1_3:24564693-24564712 None:intergenic 55.0%
CTGCAGGTTCCAGCAGTAGT+AGG - chr1_3:24564707-24564726 Msa0111080:intron 55.0%
GGTGGAATTGCAAACGGGTC+TGG + chr1_3:24564745-24564764 None:intergenic 55.0%
GAGGATGGGAAAGTCCAGCC+CGG - chr1_3:24560707-24560726 Msa0111080:intron 60.0%
TCATGCAGAGTGATCCGGGC+TGG + chr1_3:24560724-24560743 None:intergenic 60.0%
TGGCGCCTCCAAGTCAACTG+AGG + chr1_3:24560893-24560912 None:intergenic 60.0%
!! TCAGTTGACTTGGAGGCGCC+AGG - chr1_3:24560892-24560911 Msa0111080:intron 60.0%
AGGGCTCTCTTCGCCTGACA+TGG + chr1_3:24564617-24564636 None:intergenic 60.0%
CGCCCTAGTTCATCTGCTGC+AGG - chr1_3:24564691-24564710 Msa0111080:intron 60.0%
TGAGGGGCGATGAGCAACGG+AGG - chr1_3:24561413-24561432 Msa0111080:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 24559364 24565218 24559364 ID=Msa0111080;Name=Msa0111080
chr1_3 mRNA 24559364 24565218 24559364 ID=Msa0111080-mRNA-1;Parent=Msa0111080;Name=Msa0111080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=549|1|1|1|0.5|0.33|3|366|650
chr1_3 exon 24559364 24560071 24559364 ID=Msa0111080-mRNA-1:exon:8464;Parent=Msa0111080-mRNA-1
chr1_3 exon 24562904 24564682 24562904 ID=Msa0111080-mRNA-1:exon:8463;Parent=Msa0111080-mRNA-1
chr1_3 exon 24564838 24565218 24564838 ID=Msa0111080-mRNA-1:exon:8462;Parent=Msa0111080-mRNA-1
chr1_3 five_prime_UTR 24564838 24565218 24564838 ID=Msa0111080-mRNA-1:five_prime_utr;Parent=Msa0111080-mRNA-1
chr1_3 five_prime_UTR 24564515 24564682 24564515 ID=Msa0111080-mRNA-1:five_prime_utr;Parent=Msa0111080-mRNA-1
chr1_3 CDS 24562904 24564514 24562904 ID=Msa0111080-mRNA-1:cds;Parent=Msa0111080-mRNA-1
chr1_3 CDS 24559730 24560071 24559730 ID=Msa0111080-mRNA-1:cds;Parent=Msa0111080-mRNA-1
chr1_3 three_prime_UTR 24559364 24559729 24559364 ID=Msa0111080-mRNA-1:three_prime_utr;Parent=Msa0111080-mRNA-1
Gene Sequence

>Msa0111080

ATGGCAGGGATCGATGTTGCAAAGTTTGGTCATAGTCCTGTGCATAAGGCTGTGATTTTGAAGGATTATGGTGAGCTTAAGAGGATACTTGGGGGTTTACCTAAGCTGTGTAATGTGGGTGAGATTCGTACGGAAGCGGTTTCGATTTTAGAGGAAGAGAAGGCTGATGCAATCTCTGCTGTGATTGATAGGCGTGATGTGCCGAATCGCGATACTCCTCTTCACTTGGCTGTTAAATTAGGGGATGAAGCGGCTGCTGAAATGCTTATGGTTGTTGGTGCTGATTGGAGTTTGCAGAATGAACAAGGGTGGAGTGCTCTTCAAGAAGCTATTTGCAGTCGAGAAGAGCGTATTGCAAAGATTATAATTAAGCATTATCAGCCTCTTGCTTGGGCAAAATGGTGTAGAAGGTTGCCTCGTTTGGTAGCGACGATGTGGAGGATGAGAGACTTTTATATGGAGATTACTTTCAATTTCGAGAGTTCTGTGATACCTTTCATTTCAAGGATTGCACCTTCAGACACTTACAAGATTTGGAAAAGGGGTGCGAATCTAAGGGCTGACATGACTTTGGCTGGTTTCGACGGTTTTAGAATTCAGAGATCAGATCAAAGTGTTCTTTTTCTTGGTGATGGTTCAGAGGATGGGAAAGTCCAGCCCGGATCACTCTGCATGATCTCACACAAGGAAAAGGAGGTACTTAATGCTCTAGATGATGCTGCTTTTGCGGCAAATGATGAAGAAGTTCAGCAAGAAGTAGCTGCAATGTCTAAAACAAATATATTTAGGCCTGGTATTGATGTTACTCAGGCAGTTCTTTTGCCTCAGTTGACTTGGAGGCGCCAGGAGAAAACAGAAATGGTAGGATCTTGGAAAGCTAAGGTGTATGATATACACAATGTTGTTGTAAGTATAAAATCTAGAGGAGTTCCTGGAGCTATGACAGACGATGAGTTATTCTCGTCTTGCAATGAAAATGAAACCGAGAGTGAAGAACTTAACGATATTTTGACCGAAGATGAAAGAAGGCAATTGGAGGATGCACTTAAGCTGGATTCGTCAGAACTGAACAATGATAGTGATGAGGGGATCATTGCGCATCGTCCAAGCTTTAGAGACATTCCTATTGAAGATGGTAACGGTAGCAATAGTGGAGAAAATAAGCAGGAAAAGAAAGGATGGTTTGGTGGATGGAGAAAAAAAGATTATAAACATGAAGCAGCGTCGAAGAAGTTTACACCACCAAGAAGTTCTCTTTGCGTAGATGAAAAGGTGAGCGATTTATTGGGAGATTCTCCTTCAAATAATCAGATTAAACCAGGGAGACATTCTGTTGAGGTTGTTGTGAGGGGCGATGAGCAACGGAGGAAAAAAGATGCCAAAGCTTCTTCTGTAAATTCTGATAGCAGCAGAAGTCGTCATAAAGATGGAAGTCGTGAAAATGAATATAAGAAAGGATTGAGGCCTATTCTTTGGCTTTCGCCAAACTTTCCATTAAAAATTGAAGAACTCTTGCCATTACTTGACATTGTTGCAAACAAAGTTAAAGCAATTCGACGATTAAGAGAATTACTTACAACAAAACTTCCAATGGGAACTTTTCCTGTTAAGGTTGCCATTCCTGTGGTTCCCACCATCAGAGTATTGGTCACTTTTACAAAGTTTGAAGAACTTCAGCCATTAGATGAATTCGCAACACCGCCGACAAGTCCATCCATGTCAGGCGAAGAGAGCCCTGCAGCGACAAATTTCTCTGCTTCATCTTGGTTTCAGTGGATAAAGGCTCCATACCGCCCTAGTTCATCTGCTGCAGGTTCCAGCAGTAGTAGGATAGAAAATATTCCAGACCCGTTTGCAATTCCACCAGATTATACTTGGGTCACTGCTGAAGAAAAGAAGAAAAAGATGCAAGAGAAGAACAAATCAAAGAAAGGGAAAAGTCATAAACAATGA
Protein sequence

>Msa0111080

MAGIDVAKFGHSPVHKAVILKDYGELKRILGGLPKLCNVGEIRTEAVSILEEEKADAISAVIDRRDVPNRDTPLHLAVKLGDEAAAEMLMVVGADWSLQNEQGWSALQEAICSREERIAKIIIKHYQPLAWAKWCRRLPRLVATMWRMRDFYMEITFNFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRSDQSVLFLGDGSEDGKVQPGSLCMISHKEKEVLNALDDAAFAANDEEVQQEVAAMSKTNIFRPGIDVTQAVLLPQLTWRRQEKTEMVGSWKAKVYDIHNVVVSIKSRGVPGAMTDDELFSSCNENETESEELNDILTEDERRQLEDALKLDSSELNNDSDEGIIAHRPSFRDIPIEDGNGSNSGENKQEKKGWFGGWRKKDYKHEAASKKFTPPRSSLCVDEKVSDLLGDSPSNNQIKPGRHSVEVVVRGDEQRRKKDAKASSVNSDSSRSRHKDGSRENEYKKGLRPILWLSPNFPLKIEELLPLLDIVANKVKAIRRLRELLTTKLPMGTFPVKVAIPVVPTIRVLVTFTKFEELQPLDEFATPPTSPSMSGEESPAATNFSASSWFQWIKAPYRPSSSAAGSSSSRIENIPDPFAIPPDYTWVTAEEKKKKMQEKNKSKKGKSHKQ*