Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171090 | sp|Q9FHY8|HLB1_ARATH | 61.302 | 553 | 130 | 13 | 5 | 478 | 18 | 565 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171090 | A0A072VLP9 | 90.385 | 520 | 8 | 1 | 1 | 478 | 1 | 520 | 0.0 | 951 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031150 | Msa0171090 | 0.841019 | 6.124867e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171090 | MtrunA17_Chr1g0189021 | 90.385 | 520 | 8 | 1 | 1 | 478 | 1 | 520 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171090 | AT5G41950.1 | 61.302 | 553 | 130 | 13 | 5 | 478 | 18 | 565 | 0.0 | 617 |
Find 137 sgRNAs with CRISPR-Local
Find 591 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCTGGTTCGGTTTC+TGG | 0.022101 | 1_4:+55610945 | None:intergenic |
| TGTACTTGTTCTTGTGATTC+TGG | 0.181604 | 1_4:+55610924 | None:intergenic |
| TTAACCCAAATATGAATTAT+TGG | 0.194575 | 1_4:+55602482 | None:intergenic |
| TCGTGATTGGATTTGGATTC+TGG | 0.195475 | 1_4:+55610981 | None:intergenic |
| GAGCTAACATCTTCTCTTTC+GGG | 0.200894 | 1_4:+55610711 | None:intergenic |
| CGGTTAAATATCCAACTTTA+AGG | 0.206145 | 1_4:+55603837 | None:intergenic |
| TATTTCAGGCGCTTAATAAC+TGG | 0.247515 | 1_4:-55606660 | Msa0171090:intron |
| CTCAATTTGACAGACCAAAT+TGG | 0.255916 | 1_4:+55602639 | None:intergenic |
| TGTTAATTGTATTACCAATT+TGG | 0.257312 | 1_4:-55602653 | Msa0171090:three_prime_UTR |
| ATCAGGTTCGTGATTGGATT+TGG | 0.275504 | 1_4:+55610974 | None:intergenic |
| TCTTGTGATTCTGGTTGTTC+TGG | 0.283706 | 1_4:+55610933 | None:intergenic |
| CACCGGGCAATTTACAATCT+TGG | 0.286151 | 1_4:-55604481 | Msa0171090:CDS |
| TACAGTGCATCATAATCTTC+AGG | 0.287071 | 1_4:+55609592 | None:intergenic |
| AAGATGTTAGCTCTCCTTAC+AGG | 0.291498 | 1_4:-55610701 | Msa0171090:intron |
| TTTGCCAATAATTCATATTT+GGG | 0.312561 | 1_4:-55602486 | Msa0171090:three_prime_UTR |
| AGAGCTAACATCTTCTCTTT+CGG | 0.335566 | 1_4:+55610710 | None:intergenic |
| TAACTGGGGACTTGCGCTTC+AGG | 0.345281 | 1_4:-55606644 | Msa0171090:intron |
| TCTGCATCGTTGTTAACTTC+TGG | 0.345818 | 1_4:+55610870 | None:intergenic |
| TGCTGACTCTTGGGAATCAT+TGG | 0.349651 | 1_4:-55602771 | Msa0171090:CDS |
| GTACAACTGGAACCGGAATC+TGG | 0.351097 | 1_4:-55610906 | Msa0171090:CDS |
| TTACAATCTTGGAACTGTTC+TGG | 0.353539 | 1_4:-55604470 | Msa0171090:intron |
| TTGGATTTGGATTCTGGTTC+GGG | 0.356023 | 1_4:+55610987 | None:intergenic |
| CTGACTTTGCCTCCTGGTGC+TGG | 0.356759 | 1_4:-55603469 | Msa0171090:CDS |
| ATTATGATGCACTGTACAAT+TGG | 0.360131 | 1_4:-55609585 | Msa0171090:CDS |
| GATTGGCTGTACAATTCATT+TGG | 0.366257 | 1_4:+55604267 | None:intergenic |
| CAATTGGGCATTGGTACTTC+AGG | 0.369935 | 1_4:-55609569 | Msa0171090:intron |
| CCGTTCTGAGATTGTGGTTC+GGG | 0.377013 | 1_4:+55611014 | None:intergenic |
| TGGCTTCTTACTGAATAGTT+TGG | 0.382141 | 1_4:+55604210 | None:intergenic |
| CTGAGGATGCGGTGAAGAAT+TGG | 0.382580 | 1_4:+55610806 | None:intergenic |
| TTAGAAGGTGAAGTGGAATC+TGG | 0.383082 | 1_4:+55608092 | None:intergenic |
| ATTGGATTTGGATTCTGGTT+CGG | 0.386313 | 1_4:+55610986 | None:intergenic |
| ATTGGTACCAACGACTTCAT+TGG | 0.388352 | 1_4:+55610824 | None:intergenic |
| AGTTCGCAGAGAAGTGTAAA+AGG | 0.389236 | 1_4:+55602599 | None:intergenic |
| ACCATGAGAGAATTGCTTCA+TGG | 0.392969 | 1_4:-55610753 | Msa0171090:CDS |
| AATCCACGACATTTAATAGA+TGG | 0.401089 | 1_4:+55602508 | None:intergenic |
| GCAGAGGACACTTTAAGAAC+AGG | 0.403120 | 1_4:-55604318 | Msa0171090:CDS |
| TGCTTGCCTCTGTTCAACTC+TGG | 0.404309 | 1_4:+55603594 | None:intergenic |
| TTAACAAGGTTGCTGACTCT+TGG | 0.404318 | 1_4:-55602781 | Msa0171090:intron |
| ATCACAAGAACAAGTACAAC+TGG | 0.406670 | 1_4:-55610919 | Msa0171090:CDS |
| CTTGCGGTTGGTACGATCTA+TGG | 0.407275 | 1_4:-55603992 | Msa0171090:intron |
| TTAAAGCAGTCCAACTCAAC+TGG | 0.408233 | 1_4:-55606896 | Msa0171090:CDS |
| GTATCCAGGCTTACTACAAT+TGG | 0.408555 | 1_4:-55607232 | Msa0171090:intron |
| ATTCATGGCATCTCCTGATC+TGG | 0.410632 | 1_4:+55603555 | None:intergenic |
| TGATTCTGGTTGTTCTGGTT+CGG | 0.411227 | 1_4:+55610938 | None:intergenic |
| TCAAGCAGAGCATCTTTAGA+AGG | 0.411824 | 1_4:+55608077 | None:intergenic |
| CAAAGTCTCTCAACCAGATC+AGG | 0.413385 | 1_4:-55603568 | Msa0171090:CDS |
| TAACAAGGTTGCTGACTCTT+GGG | 0.418251 | 1_4:-55602780 | Msa0171090:intron |
| TCGGTTTCTGGATGAGGATC+AGG | 0.419429 | 1_4:+55610957 | None:intergenic |
| CTCTGCATTGATACAGTTCA+TGG | 0.422436 | 1_4:-55603445 | Msa0171090:CDS |
| TTCTGCGTTCAGCATTGCAT+TGG | 0.424821 | 1_4:-55611175 | Msa0171090:five_prime_UTR |
| AGCTGAAGAGCTATGGAAAC+AGG | 0.425760 | 1_4:-55607162 | Msa0171090:intron |
| GTATTGGCGGGTATTATAAC+AGG | 0.435968 | 1_4:-55602689 | Msa0171090:CDS |
| TGAGATTGTGGTTCGGGTGA+TGG | 0.437499 | 1_4:+55611020 | None:intergenic |
| TCCGTTCTGAGATTGTGGTT+CGG | 0.437601 | 1_4:+55611013 | None:intergenic |
| CCGCTACCACACCTTAAAGT+TGG | 0.441526 | 1_4:-55603848 | Msa0171090:CDS |
| TCTGGTTCGGTTTCTGGATG+AGG | 0.441772 | 1_4:+55610951 | None:intergenic |
| GATCAGGAGATGCCATGAAT+GGG | 0.443681 | 1_4:-55603552 | Msa0171090:CDS |
| ATGAGGATCAGGTTCGTGAT+TGG | 0.444544 | 1_4:+55610968 | None:intergenic |
| ATCGTTGTTAACTTCTGGAT+CGG | 0.445981 | 1_4:+55610875 | None:intergenic |
| GGAATCATTGGATGGATGGC+TGG | 0.453718 | 1_4:-55602759 | Msa0171090:CDS |
| AGATCAGGAGATGCCATGAA+TGG | 0.456962 | 1_4:-55603553 | Msa0171090:CDS |
| GCTGATCTGACTTTGCCTCC+TGG | 0.458062 | 1_4:-55603475 | Msa0171090:CDS |
| TATTTAACCGCACCTCCTGC+GGG | 0.458286 | 1_4:-55603824 | Msa0171090:CDS |
| TCGTTGTTAACTTCTGGATC+GGG | 0.458987 | 1_4:+55610876 | None:intergenic |
| TGGAATGATGAATTGGGGAG+AGG | 0.463462 | 1_4:+55611094 | None:intergenic |
| GATCGTTTCCAGTCATTATG+AGG | 0.464366 | 1_4:+55603788 | None:intergenic |
| AGTTCATGGATCAGTTTACT+TGG | 0.466595 | 1_4:-55603431 | Msa0171090:intron |
| AGAACAAGTACAACTGGAAC+CGG | 0.477279 | 1_4:-55610913 | Msa0171090:CDS |
| ACTCAACTGGAACAGTCCTC+AGG | 0.484214 | 1_4:-55606883 | Msa0171090:intron |
| ATGATGAATTGGGGAGAGGA+AGG | 0.488948 | 1_4:+55611098 | None:intergenic |
| AGTTGCAATTTGATTTCCAC+CGG | 0.493039 | 1_4:-55604498 | Msa0171090:CDS |
| ATATTTAACCGCACCTCCTG+CGG | 0.501162 | 1_4:-55603825 | Msa0171090:CDS |
| GCTTGCCTCTGTTCAACTCT+GGG | 0.504813 | 1_4:+55603595 | None:intergenic |
| CAAAGGAAGCTGAAGAGCTA+TGG | 0.504826 | 1_4:-55607169 | Msa0171090:CDS |
| GGATCACGAAAAGCTTCAGC+AGG | 0.507858 | 1_4:-55603753 | Msa0171090:intron |
| CTTGGGAATCATTGGATGGA+TGG | 0.512023 | 1_4:-55602763 | Msa0171090:CDS |
| CTGCAATATATATTGCAGAT+TGG | 0.512331 | 1_4:+55604250 | None:intergenic |
| ACAGTGCATCATAATCTTCA+GGG | 0.517083 | 1_4:+55609593 | None:intergenic |
| TTCCAAGATTGTAAATTGCC+CGG | 0.521530 | 1_4:+55604479 | None:intergenic |
| GAGGACTGTTCCAGTTGAGT+TGG | 0.523242 | 1_4:+55606886 | None:intergenic |
| GAAATCAAATTGCAACTGTA+TGG | 0.525917 | 1_4:+55604504 | None:intergenic |
| TATCCAGGCTTACTACAATT+GGG | 0.527161 | 1_4:-55607231 | Msa0171090:intron |
| ATTTCAGGCGCTTAATAACT+GGG | 0.531527 | 1_4:-55606659 | Msa0171090:intron |
| GGTGCTCCGTTCTGAGATTG+TGG | 0.534801 | 1_4:+55611008 | None:intergenic |
| CACGCAAACACAGTAGATGC+GGG | 0.538127 | 1_4:+55611139 | None:intergenic |
| GGTTCAGAGGAAAACCTGTA+AGG | 0.539595 | 1_4:+55610687 | None:intergenic |
| TTATGATGCACTGTACAATT+GGG | 0.539658 | 1_4:-55609584 | Msa0171090:CDS |
| TAGCCATCTATTAAATGTCG+TGG | 0.545540 | 1_4:-55602511 | Msa0171090:three_prime_UTR |
| GACTCTTGGGAATCATTGGA+TGG | 0.547060 | 1_4:-55602767 | Msa0171090:CDS |
| TAGTTGCACCTCATAATGAC+TGG | 0.549693 | 1_4:-55603796 | Msa0171090:CDS |
| CAGAGGACACTTTAAGAACA+GGG | 0.561148 | 1_4:-55604317 | Msa0171090:CDS |
| GCGAGGCAAAAGTGATGTAT+TGG | 0.562011 | 1_4:-55602705 | Msa0171090:CDS |
| GGCAAAAGTGATGTATTGGC+GGG | 0.563534 | 1_4:-55602701 | Msa0171090:CDS |
| TTCTAAAGATGCTCTGCTTG+AGG | 0.564390 | 1_4:-55608075 | Msa0171090:CDS |
| ATTGCAACTGTATGGCTGAA+CGG | 0.567248 | 1_4:+55604512 | None:intergenic |
| AGGCAAAAGTGATGTATTGG+CGG | 0.568848 | 1_4:-55602702 | Msa0171090:CDS |
| GCTCTTCAGCTTCCTTTGTG+CGG | 0.573547 | 1_4:+55607174 | None:intergenic |
| AGCATCTTTAGAAGGTGAAG+TGG | 0.579092 | 1_4:+55608085 | None:intergenic |
| GTCTACACTATTTATGTGCG+AGG | 0.583038 | 1_4:-55602722 | Msa0171090:CDS |
| CTTCTCTCGAGCAGGAACAA+TGG | 0.585599 | 1_4:+55604682 | None:intergenic |
| CATCATGTAGTGTGGGACAA+AGG | 0.588356 | 1_4:+55608021 | None:intergenic |
| TCCATGAAGCAATTCTCTCA+TGG | 0.592727 | 1_4:+55610752 | None:intergenic |
| ATCAATTCCAATGAAGTCGT+TGG | 0.594314 | 1_4:-55610831 | Msa0171090:CDS |
| CTTACATACATCATGTAGTG+TGG | 0.595760 | 1_4:+55608013 | None:intergenic |
| TCAATGCAGAGGCCAGCACC+AGG | 0.598449 | 1_4:+55603457 | None:intergenic |
| GGAGAGGAAGGAGTTTCGAT+CGG | 0.599511 | 1_4:+55611110 | None:intergenic |
| AAATATCCAACTTTAAGGTG+TGG | 0.603114 | 1_4:+55603842 | None:intergenic |
| TGTTTGCATGCAGGAAAGTG+CGG | 0.614003 | 1_4:-55608126 | Msa0171090:intron |
| TTTAACCGCACCTCCTGCGG+GGG | 0.615781 | 1_4:-55603822 | Msa0171090:CDS |
| CCAACTTTAAGGTGTGGTAG+CGG | 0.619422 | 1_4:+55603848 | None:intergenic |
| ACACGCAAACACAGTAGATG+CGG | 0.622564 | 1_4:+55611138 | None:intergenic |
| ATATAGCAGTGCCTTGCGGT+TGG | 0.626613 | 1_4:-55604004 | Msa0171090:CDS |
| TTACATACATCATGTAGTGT+GGG | 0.629806 | 1_4:+55608014 | None:intergenic |
| GGTATGCTGCTGCTATTGAG+AGG | 0.640973 | 1_4:-55609618 | Msa0171090:CDS |
| TGCACTGTACAATTGGGCAT+TGG | 0.643214 | 1_4:-55609578 | Msa0171090:CDS |
| ATCAGGAGATGCCATGAATG+GGG | 0.644427 | 1_4:-55603551 | Msa0171090:CDS |
| ATTTAACCGCACCTCCTGCG+GGG | 0.650150 | 1_4:-55603823 | Msa0171090:CDS |
| GAGGACACTTTAAGAACAGG+GGG | 0.652005 | 1_4:-55604315 | Msa0171090:CDS |
| CATGAACTGTATCAATGCAG+AGG | 0.654472 | 1_4:+55603446 | None:intergenic |
| TGTACGAACTGCTATCAGCA+AGG | 0.656315 | 1_4:-55604651 | Msa0171090:intron |
| GACTTCATTGGAATTGATCG+CGG | 0.661709 | 1_4:+55610836 | None:intergenic |
| CATAGATCGTACCAACCGCA+AGG | 0.665616 | 1_4:+55603993 | None:intergenic |
| CCCGAACCACAATCTCAGAA+CGG | 0.669182 | 1_4:-55611014 | Msa0171090:CDS |
| GTTGCAATTTGATTTCCACC+GGG | 0.682764 | 1_4:-55604497 | Msa0171090:CDS |
| TCTGATCGTGCAAAGATGCG+AGG | 0.685281 | 1_4:-55607197 | Msa0171090:CDS |
| AAAGATGCGAGGCCGCACAA+AGG | 0.686655 | 1_4:-55607186 | Msa0171090:CDS |
| TTTACAGTACGGATTAGCAG+AGG | 0.686728 | 1_4:-55604334 | Msa0171090:intron |
| TTTCAGGCGCTTAATAACTG+GGG | 0.688105 | 1_4:-55606658 | Msa0171090:intron |
| TAGTGTGGGACAAAGGCGAG+TGG | 0.693067 | 1_4:+55608028 | None:intergenic |
| CAAGATTGTAAATTGCCCGG+TGG | 0.696463 | 1_4:+55604482 | None:intergenic |
| AGGTATATAGCAGTGCCTTG+CGG | 0.696530 | 1_4:-55604008 | Msa0171090:CDS |
| ACGCAAACACAGTAGATGCG+GGG | 0.706076 | 1_4:+55611140 | None:intergenic |
| ATGCAGAGGCCAGCACCAGG+AGG | 0.707282 | 1_4:+55603460 | None:intergenic |
| AGAGGACACTTTAAGAACAG+GGG | 0.707286 | 1_4:-55604316 | Msa0171090:CDS |
| CAAACACAGTAGATGCGGGG+AGG | 0.735014 | 1_4:+55611143 | None:intergenic |
| AGGTACCCAGAGTTGAACAG+AGG | 0.741985 | 1_4:-55603600 | Msa0171090:CDS |
| AGGACACTTTAAGAACAGGG+GGG | 0.806890 | 1_4:-55604314 | Msa0171090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATTTAATTTAAATTT+TGG | + | chr1_4:55610006-55610025 | None:intergenic | 0.0% |
| !!! | AAAAATGTTTTTTTTTAACT+CGG | + | chr1_4:55603493-55603512 | None:intergenic | 10.0% |
| !! | TTATATTCATATTTATATTC+TGG | + | chr1_4:55605779-55605798 | None:intergenic | 10.0% |
| !!! | TTTTTGAAATTATTATCAAA+TGG | + | chr1_4:55606097-55606116 | None:intergenic | 10.0% |
| !!! | ATATGATTTTAATTTTTATG+TGG | - | chr1_4:55606135-55606154 | Msa0171090:intron | 10.0% |
| !! | AAAAATTAACAAAAATTAGA+TGG | + | chr1_4:55606702-55606721 | None:intergenic | 10.0% |
| !!! | TCATTTTCTTAAATTACTAT+TGG | - | chr1_4:55603146-55603165 | Msa0171090:intron | 15.0% |
| !! | ATCTATATAAATGCTAAAAT+TGG | + | chr1_4:55603218-55603237 | None:intergenic | 15.0% |
| !!! | AAACTTATAATTTTCTTACT+TGG | - | chr1_4:55603995-55604014 | Msa0171090:CDS | 15.0% |
| !!! | GTATTTTATTAGAAAACATA+GGG | + | chr1_4:55605244-55605263 | None:intergenic | 15.0% |
| !!! | TCATTTACAACTTTAATTTT+AGG | + | chr1_4:55605706-55605725 | None:intergenic | 15.0% |
| !! | TTTCAAGATTGAAATATATT+GGG | + | chr1_4:55605969-55605988 | None:intergenic | 15.0% |
| !! | ATTTCAAGATTGAAATATAT+TGG | + | chr1_4:55605970-55605989 | None:intergenic | 15.0% |
| !! | ATATATTTCAATCTTGAAAT+TGG | - | chr1_4:55605970-55605989 | Msa0171090:intron | 15.0% |
| !! | AAAATATATATTACAGATGT+AGG | - | chr1_4:55606002-55606021 | Msa0171090:intron | 15.0% |
| !! | AAATTATTATCAAATGGAAT+GGG | + | chr1_4:55606091-55606110 | None:intergenic | 15.0% |
| !!! | TTAGTTGATTAATTTGAATT+TGG | + | chr1_4:55606297-55606316 | None:intergenic | 15.0% |
| !! | AAAATGAAAAATAGTAAAAC+AGG | + | chr1_4:55607403-55607422 | None:intergenic | 15.0% |
| !! | ATTATTATTATTATGCTCAT+CGG | - | chr1_4:55607923-55607942 | Msa0171090:intron | 15.0% |
| !!! | TATATAACATAGTTTTACTT+TGG | - | chr1_4:55608299-55608318 | Msa0171090:intron | 15.0% |
| !! | AAAAAATATTGAGAATTCTT+TGG | - | chr1_4:55608429-55608448 | Msa0171090:intron | 15.0% |
| !! | TATAAAGTACAATATTTGAA+GGG | + | chr1_4:55608854-55608873 | None:intergenic | 15.0% |
| !! | TTATAAAGTACAATATTTGA+AGG | + | chr1_4:55608855-55608874 | None:intergenic | 15.0% |
| !! | AGAGAATAAATTATATTCAA+AGG | + | chr1_4:55609076-55609095 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATTCAATTTGT+CGG | + | chr1_4:55609923-55609942 | None:intergenic | 15.0% |
| !!! | ACAAATTGAATTTTTTTAAG+AGG | - | chr1_4:55609923-55609942 | Msa0171090:intron | 15.0% |
| !!! | TTTTATAATGAAAAAGTTCA+TGG | + | chr1_4:55610380-55610399 | None:intergenic | 15.0% |
| !! | GCATTTATATAGATATAGAT+AGG | - | chr1_4:55603224-55603243 | Msa0171090:intron | 20.0% |
| !! | TATCTATATATCTTCACAAA+TGG | + | chr1_4:55603266-55603285 | None:intergenic | 20.0% |
| !! | TATAGATATCGAATTATTGA+AGG | - | chr1_4:55603278-55603297 | Msa0171090:intron | 20.0% |
| !! | TTAAGCTCATTATTGAATTA+TGG | - | chr1_4:55603624-55603643 | Msa0171090:intron | 20.0% |
| !! | TAAGCTCATTATTGAATTAT+GGG | - | chr1_4:55603625-55603644 | Msa0171090:intron | 20.0% |
| !!! | TATTTTTTTGTTAGAACACT+TGG | - | chr1_4:55604183-55604202 | Msa0171090:intron | 20.0% |
| !! | ATCTTGTATTCAATAGTAAT+TGG | + | chr1_4:55604600-55604619 | None:intergenic | 20.0% |
| !! | CTACAAATAATTAGGTAAAA+AGG | - | chr1_4:55605084-55605103 | Msa0171090:intron | 20.0% |
| !!! | GGTATTTTATTAGAAAACAT+AGG | + | chr1_4:55605245-55605264 | None:intergenic | 20.0% |
| !!! | TTTTATTTGTACATAAGTAC+AGG | - | chr1_4:55605309-55605328 | Msa0171090:intron | 20.0% |
| !!! | TTTTACATATGAAAAATCCT+TGG | - | chr1_4:55605408-55605427 | Msa0171090:intron | 20.0% |
| !!! | TCATTTAAGATTTTCTTTAG+TGG | + | chr1_4:55605815-55605834 | None:intergenic | 20.0% |
| !! | ACTAAAGAAAATCTTAAATG+AGG | - | chr1_4:55605814-55605833 | Msa0171090:intron | 20.0% |
| !! | CTAAAGAAAATCTTAAATGA+GGG | - | chr1_4:55605815-55605834 | Msa0171090:intron | 20.0% |
| !! | TTCAAGATTGAAATATATTG+GGG | + | chr1_4:55605968-55605987 | None:intergenic | 20.0% |
| !! | GAAATTATTATCAAATGGAA+TGG | + | chr1_4:55606092-55606111 | None:intergenic | 20.0% |
| !! | GAATTCATATTGAATTTGAA+TGG | - | chr1_4:55606644-55606663 | Msa0171090:intron | 20.0% |
| !!! | TTGTTAATTTTTTTTTTCCC+AGG | - | chr1_4:55606710-55606729 | Msa0171090:intron | 20.0% |
| !! | TGATAAAGCAAATATTTACT+GGG | + | chr1_4:55606869-55606888 | None:intergenic | 20.0% |
| !! | ATGATAAAGCAAATATTTAC+TGG | + | chr1_4:55606870-55606889 | None:intergenic | 20.0% |
| !! | ATTGTTTCAACTACATTAAA+AGG | + | chr1_4:55607473-55607492 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTATGAAATCCAA+TGG | + | chr1_4:55607541-55607560 | None:intergenic | 20.0% |
| !! | AAACAAAATATATTGAACTG+AGG | + | chr1_4:55607739-55607758 | None:intergenic | 20.0% |
| !!! | ACATTTCAAGATTTTAAAAC+TGG | + | chr1_4:55607975-55607994 | None:intergenic | 20.0% |
| !!! | TTATACTCCTTATAATCTTT+TGG | - | chr1_4:55608058-55608077 | Msa0171090:CDS | 20.0% |
| !!! | TTTTTTGACCAAATTTTACA+CGG | + | chr1_4:55608373-55608392 | None:intergenic | 20.0% |
| !!! | TACCATAACAAAAGTTTTAT+AGG | + | chr1_4:55608473-55608492 | None:intergenic | 20.0% |
| !!! | TACCATAACTAAAGTTTTAT+AGG | + | chr1_4:55608518-55608537 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGTAAATTACA+AGG | - | chr1_4:55608525-55608544 | Msa0171090:intron | 20.0% |
| !!! | TACCATAACTAAAGTTTTAT+AGG | + | chr1_4:55608518-55608537 | None:intergenic | 20.0% |
| !! | TTTAGTTATGGTAAATTACA+AGG | - | chr1_4:55608525-55608544 | Msa0171090:intron | 20.0% |
| !! | ATAAAGTACAATATTTGAAG+GGG | + | chr1_4:55608853-55608872 | None:intergenic | 20.0% |
| !!! | TATTTTCTTCTCTGAAAATT+TGG | - | chr1_4:55608917-55608936 | Msa0171090:intron | 20.0% |
| !!! | AAGGTAGATATTTTTTAGAA+GGG | - | chr1_4:55609012-55609031 | Msa0171090:intron | 20.0% |
| !! | AGAATAAGGTAAAGTTAAAA+GGG | + | chr1_4:55609101-55609120 | None:intergenic | 20.0% |
| !! | AAGAATAAGGTAAAGTTAAA+AGG | + | chr1_4:55609102-55609121 | None:intergenic | 20.0% |
| !! | CTTCCTTTACAAATATTTAT+TGG | - | chr1_4:55609469-55609488 | Msa0171090:intron | 20.0% |
| !! | TAGCCAATAAATATTTGTAA+AGG | + | chr1_4:55609475-55609494 | None:intergenic | 20.0% |
| !! | GTTGCAAAAAAAATAATAAC+AGG | + | chr1_4:55609576-55609595 | None:intergenic | 20.0% |
| !!! | ACATTAAGTTTTGAATTCAT+TGG | - | chr1_4:55609952-55609971 | Msa0171090:intron | 20.0% |
| !! | GTCTTTGGTTAAAATTTATT+TGG | + | chr1_4:55610329-55610348 | None:intergenic | 20.0% |
| !!! | AATAAATTGTCGACTTTAAT+TGG | - | chr1_4:55610522-55610541 | Msa0171090:intron | 20.0% |
| !! | AGAACAATTGTTAATTACAT+TGG | + | chr1_4:55610710-55610729 | None:intergenic | 20.0% |
| !! | TTCATAATCTTACTAAAACT+TGG | + | chr1_4:55610740-55610759 | None:intergenic | 20.0% |
| !!! | AAGTTTTAGTAAGATTATGA+AGG | - | chr1_4:55610739-55610758 | Msa0171090:CDS | 20.0% |
| !!! | AGTTTTAGTAAGATTATGAA+GGG | - | chr1_4:55610740-55610759 | Msa0171090:CDS | 20.0% |
| !! | TGTTAATTGTATTACCAATT+TGG | - | chr1_4:55610991-55611010 | Msa0171090:CDS | 20.0% |
| !!! | TTTTGCCAATAATTCATATT+TGG | - | chr1_4:55611157-55611176 | Msa0171090:five_prime_UTR | 20.0% |
| !! | TTTGCCAATAATTCATATTT+GGG | - | chr1_4:55611158-55611177 | Msa0171090:five_prime_UTR | 20.0% |
| !! | TTAACCCAAATATGAATTAT+TGG | + | chr1_4:55611165-55611184 | None:intergenic | 20.0% |
| !!! | ATTTGGGTTAATTATGTTTT+TGG | - | chr1_4:55611174-55611193 | Msa0171090:five_prime_UTR | 20.0% |
| ! | AATTATGATTAGTAGAGCAT+AGG | - | chr1_4:55603001-55603020 | Msa0171090:intron | 25.0% |
| ! | ATTTGATTAATTTACACTGC+CGG | - | chr1_4:55603301-55603320 | Msa0171090:intron | 25.0% |
| !! | GATGTAAAAATGTTTTACAC+CGG | + | chr1_4:55603323-55603342 | None:intergenic | 25.0% |
| ! | TCTAATCTTTCGTGAATATT+AGG | - | chr1_4:55603904-55603923 | Msa0171090:intron | 25.0% |
| !! | TTTTCTTACTTGGATTTTCT+AGG | - | chr1_4:55604005-55604024 | Msa0171090:CDS | 25.0% |
| !!! | TGTAGACTTTATTTCTGTAT+TGG | - | chr1_4:55604159-55604178 | Msa0171090:intron | 25.0% |
| !!! | GTAGACTTTATTTCTGTATT+GGG | - | chr1_4:55604160-55604179 | Msa0171090:intron | 25.0% |
| !!! | TTGATAGGTTTGTTAATTGA+GGG | - | chr1_4:55604219-55604238 | Msa0171090:intron | 25.0% |
| ! | TGTTACGTATAGATAAAAAG+AGG | - | chr1_4:55604309-55604328 | Msa0171090:CDS | 25.0% |
| ! | GTTACGTATAGATAAAAAGA+GGG | - | chr1_4:55604310-55604329 | Msa0171090:CDS | 25.0% |
| ! | TTACGTATAGATAAAAAGAG+GGG | - | chr1_4:55604311-55604330 | Msa0171090:CDS | 25.0% |
| ! | TGTAATTTCATTTGAGAGTT+GGG | - | chr1_4:55604348-55604367 | Msa0171090:intron | 25.0% |
| ! | AAACACATTCTAGATAATCT+TGG | - | chr1_4:55604476-55604495 | Msa0171090:CDS | 25.0% |
| ! | AGCTATATTGTTGAACTTAT+TGG | - | chr1_4:55604960-55604979 | Msa0171090:intron | 25.0% |
| !!! | ATTTATATTCTGGCTCATTT+AGG | + | chr1_4:55605769-55605788 | None:intergenic | 25.0% |
| ! | TGTAACAAACATCATTTAGT+AGG | + | chr1_4:55606619-55606638 | None:intergenic | 25.0% |
| ! | GATAAAGCAAATATTTACTG+GGG | + | chr1_4:55606868-55606887 | None:intergenic | 25.0% |
| !! | AAGAAAACTTAAAGGTGTAT+AGG | + | chr1_4:55606911-55606930 | None:intergenic | 25.0% |
| ! | ATAAACACACATTTAACTGA+GGG | + | chr1_4:55607140-55607159 | None:intergenic | 25.0% |
| ! | AATAAACACACATTTAACTG+AGG | + | chr1_4:55607141-55607160 | None:intergenic | 25.0% |
| !!! | ATAAATTACCAAAGTGCTTT+TGG | + | chr1_4:55607300-55607319 | None:intergenic | 25.0% |
| !! | CAATAGAACATTTTCGTTTA+AGG | - | chr1_4:55607572-55607591 | Msa0171090:intron | 25.0% |
| !!! | CGTTTAAGGTTTGTTATTAA+TGG | - | chr1_4:55607586-55607605 | Msa0171090:intron | 25.0% |
| ! | AGTTCAACTTCAATAAAAAC+TGG | + | chr1_4:55607640-55607659 | None:intergenic | 25.0% |
| !!! | ATTTGATCTACTTTTCTCAT+TGG | - | chr1_4:55607667-55607686 | Msa0171090:intron | 25.0% |
| !! | ATTTTCCAATAGGATGTTTT+TGG | + | chr1_4:55608130-55608149 | None:intergenic | 25.0% |
| ! | ATGTAATGCAAAAAAAGCAA+GGG | + | chr1_4:55608158-55608177 | None:intergenic | 25.0% |
| ! | AATGTAATGCAAAAAAAGCA+AGG | + | chr1_4:55608159-55608178 | None:intergenic | 25.0% |
| !!! | TGCTTTTTTTGCATTACATT+TGG | - | chr1_4:55608159-55608178 | Msa0171090:intron | 25.0% |
| ! | GTAAAATTTGGTCAAAAAAC+AGG | - | chr1_4:55608374-55608393 | Msa0171090:intron | 25.0% |
| !! | CTTTGGCAAAATATTTTACT+TGG | - | chr1_4:55608446-55608465 | Msa0171090:intron | 25.0% |
| !! | GTCCTATAAAACTTTTGTTA+TGG | - | chr1_4:55608468-55608487 | Msa0171090:intron | 25.0% |
| ! | TTGTTATGGTAAACTACAAA+AGG | - | chr1_4:55608482-55608501 | Msa0171090:intron | 25.0% |
| ! | TGTTATGGTAAACTACAAAA+GGG | - | chr1_4:55608483-55608502 | Msa0171090:intron | 25.0% |
| ! | GTCCTATAAAACTTTAGTTA+TGG | - | chr1_4:55608513-55608532 | Msa0171090:intron | 25.0% |
| ! | TTATGGTAAATTACAAGGAA+GGG | - | chr1_4:55608530-55608549 | Msa0171090:intron | 25.0% |
| ! | AATGTTATCATATGACTAGA+AGG | + | chr1_4:55608631-55608650 | None:intergenic | 25.0% |
| ! | TAACATTCATAACTGTTTCA+AGG | - | chr1_4:55608644-55608663 | Msa0171090:intron | 25.0% |
| ! | GTCCTATAAAACTTTAGTTA+TGG | - | chr1_4:55608513-55608532 | Msa0171090:intron | 25.0% |
| ! | TTATGGTAAATTACAAGGAA+GGG | - | chr1_4:55608530-55608549 | Msa0171090:intron | 25.0% |
| !! | GAAAATTTGGTTTCCAATTT+AGG | - | chr1_4:55608930-55608949 | Msa0171090:intron | 25.0% |
| !!! | CAAGGTAGATATTTTTTAGA+AGG | - | chr1_4:55609011-55609030 | Msa0171090:intron | 25.0% |
| ! | GAATAAGGTAAAGTTAAAAG+GGG | + | chr1_4:55609100-55609119 | None:intergenic | 25.0% |
| ! | TAATAACAGGACAAAATAGA+AGG | + | chr1_4:55609563-55609582 | None:intergenic | 25.0% |
| ! | TATACAATACAAATACACTC+AGG | + | chr1_4:55610257-55610276 | None:intergenic | 25.0% |
| !!! | TTAAAATTTATTTGGTGCTC+TGG | + | chr1_4:55610321-55610340 | None:intergenic | 25.0% |
| ! | GGTAATTTCATTATTGAATG+TGG | + | chr1_4:55610412-55610431 | None:intergenic | 25.0% |
| ! | AACTAATGTTACAAGTTGTT+GGG | + | chr1_4:55610446-55610465 | None:intergenic | 25.0% |
| ! | AAACTAATGTTACAAGTTGT+TGG | + | chr1_4:55610447-55610466 | None:intergenic | 25.0% |
| !! | TTTTGTACATTGCTTTAACA+AGG | - | chr1_4:55610849-55610868 | Msa0171090:CDS | 25.0% |
| !!! | ATTTTGAAGTGTTAGGGTTT+TGG | + | chr1_4:55602573-55602592 | None:intergenic | 30.0% |
| ATATTGGACAAGTTCATACA+TGG | - | chr1_4:55603387-55603406 | Msa0171090:intron | 30.0% | |
| !! | CTAATTTTAGCGAACTCATA+TGG | - | chr1_4:55603570-55603589 | Msa0171090:CDS | 30.0% |
| AAAGCATAACATATTCCTAG+CGG | + | chr1_4:55603885-55603904 | None:intergenic | 30.0% | |
| ATTATGATGCACTGTACAAT+TGG | - | chr1_4:55604059-55604078 | Msa0171090:intron | 30.0% | |
| TTATGATGCACTGTACAATT+GGG | - | chr1_4:55604060-55604079 | Msa0171090:intron | 30.0% | |
| !! | GTTGATAGGTTTGTTAATTG+AGG | - | chr1_4:55604218-55604237 | Msa0171090:intron | 30.0% |
| TTAGTTGGTCAGTTAATAGT+TGG | - | chr1_4:55604250-55604269 | Msa0171090:CDS | 30.0% | |
| GTGTAATTTCATTTGAGAGT+TGG | - | chr1_4:55604347-55604366 | Msa0171090:intron | 30.0% | |
| ! | TAAGACATGTTTCTATCAAG+TGG | - | chr1_4:55604388-55604407 | Msa0171090:intron | 30.0% |
| GATAATCTTGGAGAATTAAG+TGG | - | chr1_4:55604488-55604507 | Msa0171090:CDS | 30.0% | |
| AGTTTCAAAAAGAGAACTCT+AGG | - | chr1_4:55604516-55604535 | Msa0171090:CDS | 30.0% | |
| ACATCTACGAATCACAATAT+TGG | - | chr1_4:55604543-55604562 | Msa0171090:intron | 30.0% | |
| AATCACAATATTGGTAAGAG+AGG | - | chr1_4:55604552-55604571 | Msa0171090:intron | 30.0% | |
| ! | TGGATGTTATTTGATAACAC+TGG | - | chr1_4:55604785-55604804 | Msa0171090:intron | 30.0% |
| TGTCTCATGTAAATTCAACT+AGG | + | chr1_4:55604813-55604832 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1_4:55604845-55604864 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr1_4:55605009-55605028 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr1_4:55605010-55605029 | None:intergenic | 30.0% |
| ! | TGAATAAGTTTGATAGCAAC+TGG | + | chr1_4:55605266-55605285 | None:intergenic | 30.0% |
| TTACATACATCATGTAGTGT+GGG | + | chr1_4:55605633-55605652 | None:intergenic | 30.0% | |
| CTGTATGATGTTTAGATGAA+CGG | - | chr1_4:55605665-55605684 | Msa0171090:intron | 30.0% | |
| TGTATGATGTTTAGATGAAC+GGG | - | chr1_4:55605666-55605685 | Msa0171090:intron | 30.0% | |
| ACATGCTTCCTTCTATTAAA+TGG | - | chr1_4:55606517-55606536 | Msa0171090:intron | 30.0% | |
| CGTAAAAGCCATTTAATAGA+AGG | + | chr1_4:55606528-55606547 | None:intergenic | 30.0% | |
| ! | AATGGCTTTTACGCATATTT+AGG | - | chr1_4:55606535-55606554 | Msa0171090:intron | 30.0% |
| ! | GGGGAAATTGATATGATTTT+TGG | - | chr1_4:55606562-55606581 | Msa0171090:intron | 30.0% |
| AGCTTGTGAAGAAAACTTAA+AGG | + | chr1_4:55606919-55606938 | None:intergenic | 30.0% | |
| !! | ATGCTTCTAATAGCTTGTTA+GGG | - | chr1_4:55607106-55607125 | Msa0171090:intron | 30.0% |
| TAAACACACATTTAACTGAG+GGG | + | chr1_4:55607139-55607158 | None:intergenic | 30.0% | |
| !!! | TTTTCATACCAAAAGCACTT+TGG | - | chr1_4:55607289-55607308 | Msa0171090:intron | 30.0% |
| TGTATACATGATAACACTCT+TGG | + | chr1_4:55607332-55607351 | None:intergenic | 30.0% | |
| AAACAATGTGTTCAAACACT+AGG | - | chr1_4:55607486-55607505 | Msa0171090:intron | 30.0% | |
| TATATTGAACTGAGGCATAT+GGG | + | chr1_4:55607731-55607750 | None:intergenic | 30.0% | |
| ATATATTGAACTGAGGCATA+TGG | + | chr1_4:55607732-55607751 | None:intergenic | 30.0% | |
| AAGCATACAACTAAATGACA+AGG | + | chr1_4:55607822-55607841 | None:intergenic | 30.0% | |
| TGATAATAGATTGAGAGGAT+AGG | + | chr1_4:55607875-55607894 | None:intergenic | 30.0% | |
| ATGACTGATAATAGATTGAG+AGG | + | chr1_4:55607880-55607899 | None:intergenic | 30.0% | |
| TGGATAAAAGATTATGGAAG+TGG | + | chr1_4:55607998-55608017 | None:intergenic | 30.0% | |
| ! | AGAAAGTGTGAAATTCAAGA+GGG | + | chr1_4:55608022-55608041 | None:intergenic | 30.0% |
| ! | AAGAAAGTGTGAAATTCAAG+AGG | + | chr1_4:55608023-55608042 | None:intergenic | 30.0% |
| TTGTCGACCAAAAGATTATA+AGG | + | chr1_4:55608068-55608087 | None:intergenic | 30.0% | |
| AGGATGCTTGAAAATAGAAT+TGG | + | chr1_4:55608210-55608229 | None:intergenic | 30.0% | |
| ATAGATCAATGACTCTACTA+AGG | + | chr1_4:55608270-55608289 | None:intergenic | 30.0% | |
| GGCACTAAAAACAATAAAAG+AGG | + | chr1_4:55608348-55608367 | None:intergenic | 30.0% | |
| GTTATGGTAAACTACAAAAG+GGG | - | chr1_4:55608484-55608503 | Msa0171090:intron | 30.0% | |
| GTTATGGTAAATTACAAGGA+AGG | - | chr1_4:55608529-55608548 | Msa0171090:intron | 30.0% | |
| AAGGTGACAAATTGAAGTTA+TGG | + | chr1_4:55608612-55608631 | None:intergenic | 30.0% | |
| ATTCATAACTGTTTCAAGGA+AGG | - | chr1_4:55608648-55608667 | Msa0171090:intron | 30.0% | |
| TTCATAACTGTTTCAAGGAA+GGG | - | chr1_4:55608649-55608668 | Msa0171090:intron | 30.0% | |
| !! | GTTAATTTGTCACCTTCAAT+TGG | - | chr1_4:55608671-55608690 | Msa0171090:intron | 30.0% |
| !! | AGTTTTATAGGACCAATTGA+AGG | + | chr1_4:55608686-55608705 | None:intergenic | 30.0% |
| GTTATGGTAAATTACAAGGA+AGG | - | chr1_4:55608529-55608548 | Msa0171090:intron | 30.0% | |
| AAGGTGACAAATTGAAGTTA+TGG | + | chr1_4:55608612-55608631 | None:intergenic | 30.0% | |
| AATGTTATCGTATGACTAGA+AGG | + | chr1_4:55608811-55608830 | None:intergenic | 30.0% | |
| AACATTCATAACTGTTTCCA+AGG | - | chr1_4:55608825-55608844 | Msa0171090:intron | 30.0% | |
| !!! | TTTTTTAGAAGGGAATCACA+TGG | - | chr1_4:55609022-55609041 | Msa0171090:intron | 30.0% |
| GAAATCAAATTGCAACTGTA+TGG | + | chr1_4:55609143-55609162 | None:intergenic | 30.0% | |
| TGCTAAATGACTTTACAGTA+CGG | - | chr1_4:55609299-55609318 | Msa0171090:intron | 30.0% | |
| CTGCAATATATATTGCAGAT+TGG | + | chr1_4:55609397-55609416 | None:intergenic | 30.0% | |
| AAAGGAAGATGATTAGACAA+TGG | + | chr1_4:55609457-55609476 | None:intergenic | 30.0% | |
| ! | TATTGGCTATGTGCATTATT+TGG | - | chr1_4:55609486-55609505 | Msa0171090:intron | 30.0% |
| GTGCATTATTTGGATTGTAA+AGG | - | chr1_4:55609496-55609515 | Msa0171090:intron | 30.0% | |
| !!! | GAAATCAGCCCATAATTTTT+TGG | - | chr1_4:55609605-55609624 | Msa0171090:CDS | 30.0% |
| AGTACATATTATGCGCTATA+TGG | - | chr1_4:55609677-55609696 | Msa0171090:intron | 30.0% | |
| !! | AAATATCCAACTTTAAGGTG+TGG | + | chr1_4:55609805-55609824 | None:intergenic | 30.0% |
| CGGTTAAATATCCAACTTTA+AGG | + | chr1_4:55609810-55609829 | None:intergenic | 30.0% | |
| ! | GAAACGATCAGAATTCTTTT+TGG | - | chr1_4:55609870-55609889 | Msa0171090:intron | 30.0% |
| !!! | AGTTTTTTTATCCCCATTCA+TGG | + | chr1_4:55610107-55610126 | None:intergenic | 30.0% |
| CAATTGCTCTATATTGTCTT+TGG | + | chr1_4:55610344-55610363 | None:intergenic | 30.0% | |
| AAGACAATATAGAGCAATTG+TGG | - | chr1_4:55610344-55610363 | Msa0171090:intron | 30.0% | |
| TAAAAAAGTCATGCCATCAA+GGG | + | chr1_4:55610605-55610624 | None:intergenic | 30.0% | |
| ATAAAAAAGTCATGCCATCA+AGG | + | chr1_4:55610606-55610625 | None:intergenic | 30.0% | |
| !! | TTTAGCCTTATATCAAAGCA+CGG | + | chr1_4:55610646-55610665 | None:intergenic | 30.0% |
| ATCTTACTAAAACTTGGACT+TGG | + | chr1_4:55610734-55610753 | None:intergenic | 30.0% | |
| ! | TAAAGAGATTCTCATGCTTT+TGG | + | chr1_4:55610800-55610819 | None:intergenic | 30.0% |
| AATCCACGACATTTAATAGA+TGG | + | chr1_4:55611139-55611158 | None:intergenic | 30.0% | |
| !!! | GGTTTTGGAATGATGAATTG+GGG | + | chr1_4:55602558-55602577 | None:intergenic | 35.0% |
| !!! | GGGTTTTGGAATGATGAATT+GGG | + | chr1_4:55602559-55602578 | None:intergenic | 35.0% |
| !!! | AGGGTTTTGGAATGATGAAT+TGG | + | chr1_4:55602560-55602579 | None:intergenic | 35.0% |
| !!! | TCGGACATTTTGAAGTGTTA+GGG | + | chr1_4:55602579-55602598 | None:intergenic | 35.0% |
| !!! | TTCGGACATTTTGAAGTGTT+AGG | + | chr1_4:55602580-55602599 | None:intergenic | 35.0% |
| !!! | TTCGTTTTGAGATTCTGGTT+CGG | + | chr1_4:55602598-55602617 | None:intergenic | 35.0% |
| !!! | TGAAGTTCGTTTTGAGATTC+TGG | + | chr1_4:55602603-55602622 | None:intergenic | 35.0% |
| ! | ATTGGATTTGGATTCTGGTT+CGG | + | chr1_4:55602661-55602680 | None:intergenic | 35.0% |
| TGTACTTGTTCTTGTGATTC+TGG | + | chr1_4:55602723-55602742 | None:intergenic | 35.0% | |
| ATCACAAGAACAAGTACAAC+TGG | - | chr1_4:55602725-55602744 | Msa0171090:CDS | 35.0% | |
| ATCGTTGTTAACTTCTGGAT+CGG | + | chr1_4:55602772-55602791 | None:intergenic | 35.0% | |
| ATCAATTCCAATGAAGTCGT+TGG | - | chr1_4:55602813-55602832 | Msa0171090:intron | 35.0% | |
| AGAGCTAACATCTTCTCTTT+CGG | + | chr1_4:55602937-55602956 | None:intergenic | 35.0% | |
| GATGAAATTGAAAGGTTCAG+AGG | + | chr1_4:55602973-55602992 | None:intergenic | 35.0% | |
| GCGAAAACGATGAAATTGAA+AGG | + | chr1_4:55602981-55603000 | None:intergenic | 35.0% | |
| ! | TTAGTAGAGCATAGGTATTG+CGG | - | chr1_4:55603009-55603028 | Msa0171090:intron | 35.0% |
| ! | ACATCTTTGATCAGAAGTGT+TGG | + | chr1_4:55603077-55603096 | None:intergenic | 35.0% |
| ACTTCTGATCAAAGATGTTG+TGG | - | chr1_4:55603079-55603098 | Msa0171090:intron | 35.0% | |
| ATCAAATCACATGTCAGTGT+CGG | + | chr1_4:55603112-55603131 | None:intergenic | 35.0% | |
| TACTATTGGTATCAACGTGT+CGG | - | chr1_4:55603160-55603179 | Msa0171090:intron | 35.0% | |
| AGTGGTTCATAGTTGAGAAA+TGG | - | chr1_4:55603190-55603209 | Msa0171090:intron | 35.0% | |
| !! | CATTTTTACATCGACTGTGT+TGG | - | chr1_4:55603331-55603350 | Msa0171090:intron | 35.0% |
| !! | TTGCTCTGGCTTTACTATAT+TGG | - | chr1_4:55603371-55603390 | Msa0171090:intron | 35.0% |
| ! | TTTTAGCGAACTCATATGGT+TGG | - | chr1_4:55603574-55603593 | Msa0171090:CDS | 35.0% |
| !!! | TGATTTGCTTTTGCTTCTCA+GGG | - | chr1_4:55603954-55603973 | Msa0171090:intron | 35.0% |
| ACAGTGCATCATAATCTTCA+GGG | + | chr1_4:55604054-55604073 | None:intergenic | 35.0% | |
| TACAGTGCATCATAATCTTC+AGG | + | chr1_4:55604055-55604074 | None:intergenic | 35.0% | |
| ! | TATGTAGTATTGAAGTGTGC+TGG | - | chr1_4:55604121-55604140 | Msa0171090:intron | 35.0% |
| ! | ATGTAGTATTGAAGTGTGCT+GGG | - | chr1_4:55604122-55604141 | Msa0171090:intron | 35.0% |
| GGCTTCATATCAATGTTGAT+AGG | - | chr1_4:55604204-55604223 | Msa0171090:intron | 35.0% | |
| TTGAGGGAGTTAAACTTAGT+TGG | - | chr1_4:55604235-55604254 | Msa0171090:CDS | 35.0% | |
| GATAAAAAGAGGGGTTTAGA+AGG | - | chr1_4:55604320-55604339 | Msa0171090:CDS | 35.0% | |
| !! | TGTCTTATTTAGTTGCCCAA+AGG | + | chr1_4:55604375-55604394 | None:intergenic | 35.0% |
| TCGCAATCAATAACACTACT+AGG | + | chr1_4:55604645-55604664 | None:intergenic | 35.0% | |
| ! | GTAGTGTTATTGATTGCGAA+TGG | - | chr1_4:55604646-55604665 | Msa0171090:intron | 35.0% |
| TATAGCCAATTTGTGAAGGA+CGG | + | chr1_4:55604743-55604762 | None:intergenic | 35.0% | |
| TTTGGGAGAACTTGAGAAAA+CGG | + | chr1_4:55604992-55605011 | None:intergenic | 35.0% | |
| GCTTATTTGAGCTTATCTAC+TGG | + | chr1_4:55605034-55605053 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+TGG | - | chr1_4:55605044-55605063 | Msa0171090:intron | 35.0% | |
| TGTTGCCTACAAATAAGAAG+AGG | - | chr1_4:55605109-55605128 | Msa0171090:intron | 35.0% | |
| GTTGCCTACAAATAAGAAGA+GGG | - | chr1_4:55605110-55605129 | Msa0171090:intron | 35.0% | |
| TTGCCTACAAATAAGAAGAG+GGG | - | chr1_4:55605111-55605130 | Msa0171090:intron | 35.0% | |
| !!! | TCTTGTCATTTTGAGAGTTG+AGG | - | chr1_4:55605153-55605172 | Msa0171090:intron | 35.0% |
| ! | TATTAGCTGACAGAAGTGTA+TGG | + | chr1_4:55605335-55605354 | None:intergenic | 35.0% |
| GAGAAAATGCAAAATACACG+AGG | + | chr1_4:55605372-55605391 | None:intergenic | 35.0% | |
| GTATGTTCGTAATGTATCCA+AGG | + | chr1_4:55605428-55605447 | None:intergenic | 35.0% | |
| GAATGAACTACTTCAAAGCT+TGG | + | chr1_4:55605492-55605511 | None:intergenic | 35.0% | |
| TTCATTCATTGTTTGCATGC+AGG | - | chr1_4:55605509-55605528 | Msa0171090:intron | 35.0% | |
| AGCTTGCAAAAAATATGACG+AGG | - | chr1_4:55605593-55605612 | Msa0171090:intron | 35.0% | |
| CTTACATACATCATGTAGTG+TGG | + | chr1_4:55605634-55605653 | None:intergenic | 35.0% | |
| CACACTACATGATGTATGTA+AGG | - | chr1_4:55605632-55605651 | Msa0171090:intron | 35.0% | |
| ! | GTGAAAAGTACGGATAAACT+AGG | + | chr1_4:55606334-55606353 | None:intergenic | 35.0% |
| ATCGTTCTCTGTGAAAAGTA+CGG | + | chr1_4:55606344-55606363 | None:intergenic | 35.0% | |
| TATCCAGGCTTACTACAATT+GGG | - | chr1_4:55606413-55606432 | Msa0171090:intron | 35.0% | |
| ! | TTTTACGCATATTTAGGCTC+TGG | - | chr1_4:55606541-55606560 | Msa0171090:intron | 35.0% |
| TTTACGCATATTTAGGCTCT+GGG | - | chr1_4:55606542-55606561 | Msa0171090:intron | 35.0% | |
| CATCATTTAGTAGGCATCAA+GGG | + | chr1_4:55606610-55606629 | None:intergenic | 35.0% | |
| ACATCATTTAGTAGGCATCA+AGG | + | chr1_4:55606611-55606630 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTCCCAGGCAAC+AGG | - | chr1_4:55606717-55606736 | Msa0171090:intron | 35.0% |
| !!! | TTTTTTTTTCCCAGGCAACA+GGG | - | chr1_4:55606718-55606737 | Msa0171090:intron | 35.0% |
| AAAAAAGAGAGAAGAACCTG+AGG | + | chr1_4:55606780-55606799 | None:intergenic | 35.0% | |
| TTCGATGAGAGTCAGTAAAA+GGG | + | chr1_4:55606962-55606981 | None:intergenic | 35.0% | |
| ATTCGATGAGAGTCAGTAAA+AGG | + | chr1_4:55606963-55606982 | None:intergenic | 35.0% | |
| ACTCTCATCGAATCTATTTC+AGG | - | chr1_4:55606970-55606989 | Msa0171090:intron | 35.0% | |
| TATTTCAGGCGCTTAATAAC+TGG | - | chr1_4:55606984-55607003 | Msa0171090:intron | 35.0% | |
| ATTTCAGGCGCTTAATAACT+GGG | - | chr1_4:55606985-55607004 | Msa0171090:intron | 35.0% | |
| !! | CATGCTTCTAATAGCTTGTT+AGG | - | chr1_4:55607105-55607124 | Msa0171090:intron | 35.0% |
| ! | TTTCATCCTTTTCTATGAGC+TGG | - | chr1_4:55607243-55607262 | Msa0171090:intron | 35.0% |
| ACATGATAACACTCTTGGAT+AGG | + | chr1_4:55607327-55607346 | None:intergenic | 35.0% | |
| ATGACTGTCTTGATACATAG+AGG | + | chr1_4:55607368-55607387 | None:intergenic | 35.0% | |
| GGAAGGGTCAATAAATTTCA+AGG | + | chr1_4:55607785-55607804 | None:intergenic | 35.0% | |
| GAGGGTTGGATAAAAGATTA+TGG | + | chr1_4:55608004-55608023 | None:intergenic | 35.0% | |
| CCTGATAGTATTTCAAGACT+CGG | - | chr1_4:55608101-55608120 | Msa0171090:CDS | 35.0% | |
| CTGATAGTATTTCAAGACTC+GGG | - | chr1_4:55608102-55608121 | Msa0171090:CDS | 35.0% | |
| ! | AAGGGTTCACATTTTCCAAT+AGG | + | chr1_4:55608140-55608159 | None:intergenic | 35.0% |
| ATCCTTGTAGAACATTACTC+AGG | - | chr1_4:55608225-55608244 | Msa0171090:intron | 35.0% | |
| TACCTGAGTAATGTTCTACA+AGG | + | chr1_4:55608230-55608249 | None:intergenic | 35.0% | |
| ! | TCTACTAAGGTGCTAATGTT+AGG | + | chr1_4:55608257-55608276 | None:intergenic | 35.0% |
| TAAACTACAAAAGGGGAACT+TGG | - | chr1_4:55608491-55608510 | Msa0171090:intron | 35.0% | |
| ACCAACAATAAACCCACAAT+TGG | + | chr1_4:55608559-55608578 | None:intergenic | 35.0% | |
| ! | TCCTGATTTGCATTTGTAAG+AGG | - | chr1_4:55608580-55608599 | Msa0171090:intron | 35.0% |
| ACCAACAATAAACCCACAAT+TGG | + | chr1_4:55608559-55608578 | None:intergenic | 35.0% | |
| ! | TCCTGATTTGCATTTGTAAG+AGG | - | chr1_4:55608580-55608599 | Msa0171090:intron | 35.0% |
| ! | AGTTGCAATTTGATTTCCAC+CGG | - | chr1_4:55609146-55609165 | Msa0171090:intron | 35.0% |
| TTCCAAGATTGTAAATTGCC+CGG | + | chr1_4:55609168-55609187 | None:intergenic | 35.0% | |
| TTACAATCTTGGAACTGTTC+TGG | - | chr1_4:55609174-55609193 | Msa0171090:intron | 35.0% | |
| ! | GATTGGCTGTACAATTCATT+TGG | + | chr1_4:55609380-55609399 | None:intergenic | 35.0% |
| TGGCTTCTTACTGAATAGTT+TGG | + | chr1_4:55609437-55609456 | None:intergenic | 35.0% | |
| GCCACACACCAAAAAATTAT+GGG | + | chr1_4:55609616-55609635 | None:intergenic | 35.0% | |
| TGCCACACACCAAAAAATTA+TGG | + | chr1_4:55609617-55609636 | None:intergenic | 35.0% | |
| !!! | ATAATTTTTTGGTGTGTGGC+AGG | - | chr1_4:55609616-55609635 | Msa0171090:CDS | 35.0% |
| GAATTCATTGGATAACCTCT+AGG | - | chr1_4:55609964-55609983 | Msa0171090:intron | 35.0% | |
| AGTTCATGGATCAGTTTACT+TGG | - | chr1_4:55610213-55610232 | Msa0171090:intron | 35.0% | |
| !!! | TTAGTTTGCCATTTTTGCGA+TGG | - | chr1_4:55610466-55610485 | Msa0171090:intron | 35.0% |
| CTAAACCCTATGTATTTCCT+GGG | - | chr1_4:55610661-55610680 | Msa0171090:intron | 35.0% | |
| !! | ATTACATTGGTGTTGAGTCA+GGG | + | chr1_4:55610697-55610716 | None:intergenic | 35.0% |
| !! | AATTACATTGGTGTTGAGTC+AGG | + | chr1_4:55610698-55610717 | None:intergenic | 35.0% |
| GTAAGATTATGAAGGGTTGA+TGG | - | chr1_4:55610747-55610766 | Msa0171090:CDS | 35.0% | |
| CTCAATTTGACAGACCAAAT+TGG | + | chr1_4:55611008-55611027 | None:intergenic | 35.0% | |
| TAGCCATCTATTAAATGTCG+TGG | - | chr1_4:55611133-55611152 | Msa0171090:five_prime_UTR | 35.0% | |
| !! | TTGGATTTGGATTCTGGTTC+GGG | + | chr1_4:55602660-55602679 | None:intergenic | 40.0% |
| TCGTGATTGGATTTGGATTC+TGG | + | chr1_4:55602666-55602685 | None:intergenic | 40.0% | |
| ATCAGGTTCGTGATTGGATT+TGG | + | chr1_4:55602673-55602692 | None:intergenic | 40.0% | |
| ! | TGATTCTGGTTGTTCTGGTT+CGG | + | chr1_4:55602709-55602728 | None:intergenic | 40.0% |
| ! | TCTTGTGATTCTGGTTGTTC+TGG | + | chr1_4:55602714-55602733 | None:intergenic | 40.0% |
| AGAACAAGTACAACTGGAAC+CGG | - | chr1_4:55602731-55602750 | Msa0171090:CDS | 40.0% | |
| TCGTTGTTAACTTCTGGATC+GGG | + | chr1_4:55602771-55602790 | None:intergenic | 40.0% | |
| TCTGCATCGTTGTTAACTTC+TGG | + | chr1_4:55602777-55602796 | None:intergenic | 40.0% | |
| GACTTCATTGGAATTGATCG+CGG | + | chr1_4:55602811-55602830 | None:intergenic | 40.0% | |
| ATTGGTACCAACGACTTCAT+TGG | + | chr1_4:55602823-55602842 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTCAGCTGAGGATG+CGG | + | chr1_4:55602852-55602871 | None:intergenic | 40.0% |
| !!! | CCTTCATCTTTTTTCAGCTG+AGG | + | chr1_4:55602858-55602877 | None:intergenic | 40.0% |
| CCTCAGCTGAAAAAAGATGA+AGG | - | chr1_4:55602855-55602874 | Msa0171090:intron | 40.0% | |
| ACCATGAGAGAATTGCTTCA+TGG | - | chr1_4:55602891-55602910 | Msa0171090:intron | 40.0% | |
| TCCATGAAGCAATTCTCTCA+TGG | + | chr1_4:55602895-55602914 | None:intergenic | 40.0% | |
| GAGCTAACATCTTCTCTTTC+GGG | + | chr1_4:55602936-55602955 | None:intergenic | 40.0% | |
| ! | AAGATGTTAGCTCTCCTTAC+AGG | - | chr1_4:55602943-55602962 | Msa0171090:intron | 40.0% |
| AGAACAGAACAATGCTGCTA+TGG | - | chr1_4:55603754-55603773 | Msa0171090:CDS | 40.0% | |
| !! | GAGTTGATAAACAGCGTTGT+AGG | - | chr1_4:55603776-55603795 | Msa0171090:CDS | 40.0% |
| ! | TTCTTACATTTGCTGCCAAG+AGG | - | chr1_4:55603831-55603850 | Msa0171090:CDS | 40.0% |
| GTAGAACCTAGAAGTGATTG+TGG | + | chr1_4:55603859-55603878 | None:intergenic | 40.0% | |
| CATAACATATTCCTAGCGGT+AGG | + | chr1_4:55603881-55603900 | None:intergenic | 40.0% | |
| !!! | CTGATTTGCTTTTGCTTCTC+AGG | - | chr1_4:55603953-55603972 | Msa0171090:intron | 40.0% |
| ! | TCAGTTAATAGTTGGTGCCT+TGG | - | chr1_4:55604258-55604277 | Msa0171090:CDS | 40.0% |
| ! | CAGTTAATAGTTGGTGCCTT+GGG | - | chr1_4:55604259-55604278 | Msa0171090:CDS | 40.0% |
| TTTAATGATTCCAGCTCCCA+AGG | + | chr1_4:55604278-55604297 | None:intergenic | 40.0% | |
| AAAAAGAGGGGTTTAGAAGG+AGG | - | chr1_4:55604323-55604342 | Msa0171090:CDS | 40.0% | |
| ATTTGAGAGTTGGGTCCTTT+GGG | - | chr1_4:55604357-55604376 | Msa0171090:intron | 40.0% | |
| ! | TGGTATTGAAGCTCTGTTCT+TGG | - | chr1_4:55604408-55604427 | Msa0171090:intron | 40.0% |
| ! | GTGTTATTGATTGCGAATGG+TGG | - | chr1_4:55604649-55604668 | Msa0171090:intron | 40.0% |
| CTGCTATAGCCAATTTGTGA+AGG | + | chr1_4:55604747-55604766 | None:intergenic | 40.0% | |
| CACAAATTGGCTATAGCAGT+TGG | - | chr1_4:55604748-55604767 | Msa0171090:intron | 40.0% | |
| AGTTGGCAAGTATTCTGTCA+TGG | - | chr1_4:55604765-55604784 | Msa0171090:intron | 40.0% | |
| TAATAAGGGCCAGTTTGGAT+TGG | + | chr1_4:55605056-55605075 | None:intergenic | 40.0% | |
| CAAACTGGCCCTTATTAGTT+CGG | - | chr1_4:55605059-55605078 | Msa0171090:intron | 40.0% | |
| AAACTGGCCCTTATTAGTTC+GGG | - | chr1_4:55605060-55605079 | Msa0171090:intron | 40.0% | |
| TTGTAGCCCCGAACTAATAA+GGG | + | chr1_4:55605070-55605089 | None:intergenic | 40.0% | |
| TTTGTAGCCCCGAACTAATA+AGG | + | chr1_4:55605071-55605090 | None:intergenic | 40.0% | |
| GTTCGGGGCTACAAATAATT+AGG | - | chr1_4:55605076-55605095 | Msa0171090:intron | 40.0% | |
| ! | CAACCCCTCTTCTTATTTGT+AGG | + | chr1_4:55605117-55605136 | None:intergenic | 40.0% |
| !! | ATTTTGAGAGTTGAGGCCAT+TGG | - | chr1_4:55605160-55605179 | Msa0171090:intron | 40.0% |
| !! | TTTTGAGAGTTGAGGCCATT+GGG | - | chr1_4:55605161-55605180 | Msa0171090:intron | 40.0% |
| TTAGAAGGTGAAGTGGAATC+TGG | + | chr1_4:55605555-55605574 | None:intergenic | 40.0% | |
| ! | AGCATCTTTAGAAGGTGAAG+TGG | + | chr1_4:55605562-55605581 | None:intergenic | 40.0% |
| ! | TCAAGCAGAGCATCTTTAGA+AGG | + | chr1_4:55605570-55605589 | None:intergenic | 40.0% |
| ! | TTCTAAAGATGCTCTGCTTG+AGG | - | chr1_4:55605569-55605588 | Msa0171090:intron | 40.0% |
| ! | GTACTTTTCACAGAGAACGA+TGG | - | chr1_4:55606343-55606362 | Msa0171090:intron | 40.0% |
| GTATCCAGGCTTACTACAAT+TGG | - | chr1_4:55606412-55606431 | Msa0171090:intron | 40.0% | |
| AAGAGCTATGGAAACAGGTT+AGG | - | chr1_4:55606487-55606506 | Msa0171090:intron | 40.0% | |
| TTACGCATATTTAGGCTCTG+GGG | - | chr1_4:55606543-55606562 | Msa0171090:intron | 40.0% | |
| TTAAAGCAGTCCAACTCAAC+TGG | - | chr1_4:55606748-55606767 | Msa0171090:intron | 40.0% | |
| TTAGCGTCTTCTTGTTGAAC+TGG | - | chr1_4:55606813-55606832 | Msa0171090:intron | 40.0% | |
| TCGATGAGAGTCAGTAAAAG+GGG | + | chr1_4:55606961-55606980 | None:intergenic | 40.0% | |
| TTTCAGGCGCTTAATAACTG+GGG | - | chr1_4:55606986-55607005 | Msa0171090:intron | 40.0% | |
| AAAGCTCCAGCTCATAGAAA+AGG | + | chr1_4:55607252-55607271 | None:intergenic | 40.0% | |
| TTCAAACACTAGGTGTGACT+GGG | - | chr1_4:55607496-55607515 | Msa0171090:intron | 40.0% | |
| TATGGATCAGTCAATGCCAT+TGG | - | chr1_4:55607522-55607541 | Msa0171090:intron | 40.0% | |
| ! | TAATGGTTTCTCCGTTTTCG+CGG | - | chr1_4:55607603-55607622 | Msa0171090:intron | 40.0% |
| GGTACTGTGTAATCTTGGAA+GGG | + | chr1_4:55607801-55607820 | None:intergenic | 40.0% | |
| ! | AGGTACTGTGTAATCTTGGA+AGG | + | chr1_4:55607802-55607821 | None:intergenic | 40.0% |
| !! | GACAAGGTACTGTGTAATCT+TGG | + | chr1_4:55607806-55607825 | None:intergenic | 40.0% |
| AGTGTGAAATTCAAGAGGGT+TGG | + | chr1_4:55608018-55608037 | None:intergenic | 40.0% | |
| CCGAGTCTTGAAATACTATC+AGG | + | chr1_4:55608104-55608123 | None:intergenic | 40.0% | |
| AGAATTGGATGAGCTAGTAG+TGG | + | chr1_4:55608195-55608214 | None:intergenic | 40.0% | |
| ! | TTGACCAAATTTTACACGGC+TGG | + | chr1_4:55608369-55608388 | None:intergenic | 40.0% |
| GGTGTCAGTCAAGTTTATGT+TGG | - | chr1_4:55608395-55608414 | Msa0171090:intron | 40.0% | |
| GCCAATTGTGGGTTTATTGT+TGG | - | chr1_4:55608555-55608574 | Msa0171090:intron | 40.0% | |
| GCCTCTTACAAATGCAAATC+AGG | + | chr1_4:55608584-55608603 | None:intergenic | 40.0% | |
| GATTTGCATTTGTAAGAGGC+TGG | - | chr1_4:55608584-55608603 | Msa0171090:intron | 40.0% | |
| GCCAATTGTGGGTTTATTGT+TGG | - | chr1_4:55608555-55608574 | Msa0171090:intron | 40.0% | |
| GCCTCTTACAAATGCAAATC+AGG | + | chr1_4:55608584-55608603 | None:intergenic | 40.0% | |
| GATTTGCATTTGTAAGAGGC+TGG | - | chr1_4:55608584-55608603 | Msa0171090:intron | 40.0% | |
| ! | ATGGCACTGAGTTCCTAAAT+TGG | + | chr1_4:55608946-55608965 | None:intergenic | 40.0% |
| !!! | ATTTTTTGCTTCTCTCGAGC+AGG | + | chr1_4:55608973-55608992 | None:intergenic | 40.0% |
| CGGAACTGCATTGAAGAATA+AGG | + | chr1_4:55609115-55609134 | None:intergenic | 40.0% | |
| ATTGCAACTGTATGGCTGAA+CGG | + | chr1_4:55609135-55609154 | None:intergenic | 40.0% | |
| ! | GTTGCAATTTGATTTCCACC+GGG | - | chr1_4:55609147-55609166 | Msa0171090:intron | 40.0% |
| !! | TTTACAGTACGGATTAGCAG+AGG | - | chr1_4:55609310-55609329 | Msa0171090:intron | 40.0% |
| ! | CAGAGGACACTTTAAGAACA+GGG | - | chr1_4:55609327-55609346 | Msa0171090:intron | 40.0% |
| ! | AGAGGACACTTTAAGAACAG+GGG | - | chr1_4:55609328-55609347 | Msa0171090:intron | 40.0% |
| !!! | GCCCATAATTTTTTGGTGTG+TGG | - | chr1_4:55609612-55609631 | Msa0171090:CDS | 40.0% |
| TAGTTGCACCTCATAATGAC+TGG | - | chr1_4:55609848-55609867 | Msa0171090:intron | 40.0% | |
| GATCGTTTCCAGTCATTATG+AGG | + | chr1_4:55609859-55609878 | None:intergenic | 40.0% | |
| CATGAACTGTATCAATGCAG+AGG | + | chr1_4:55610201-55610220 | None:intergenic | 40.0% | |
| ! | CTCTGCATTGATACAGTTCA+TGG | - | chr1_4:55610199-55610218 | Msa0171090:intron | 40.0% |
| !! | CTTCCTTCTACACTTGTTGT+AGG | - | chr1_4:55610286-55610305 | Msa0171090:intron | 40.0% |
| CAACCTACAACAAGTGTAGA+AGG | + | chr1_4:55610292-55610311 | None:intergenic | 40.0% | |
| AGAACAAGCCATCGCAAAAA+TGG | + | chr1_4:55610477-55610496 | None:intergenic | 40.0% | |
| ! | CTCTTGTTGTGCTGTTGAAA+TGG | - | chr1_4:55610569-55610588 | Msa0171090:intron | 40.0% |
| ! | TTGTTGTGCTGTTGAAATGG+TGG | - | chr1_4:55610572-55610591 | Msa0171090:intron | 40.0% |
| GCTAAACCCTATGTATTTCC+TGG | - | chr1_4:55610660-55610679 | Msa0171090:intron | 40.0% | |
| AGTCACCCAGGAAATACATA+GGG | + | chr1_4:55610669-55610688 | None:intergenic | 40.0% | |
| !! | TTACATTGGTGTTGAGTCAG+GGG | + | chr1_4:55610696-55610715 | None:intergenic | 40.0% |
| !! | TTAACAAGGTTGCTGACTCT+TGG | - | chr1_4:55610863-55610882 | Msa0171090:CDS | 40.0% |
| !! | TAACAAGGTTGCTGACTCTT+GGG | - | chr1_4:55610864-55610883 | Msa0171090:CDS | 40.0% |
| GTCTACACTATTTATGTGCG+AGG | - | chr1_4:55610922-55610941 | Msa0171090:CDS | 40.0% | |
| AGGCAAAAGTGATGTATTGG+CGG | - | chr1_4:55610942-55610961 | Msa0171090:CDS | 40.0% | |
| ! | GTATTGGCGGGTATTATAAC+AGG | - | chr1_4:55610955-55610974 | Msa0171090:CDS | 40.0% |
| ! | AGTTCGCAGAGAAGTGTAAA+AGG | + | chr1_4:55611048-55611067 | None:intergenic | 40.0% |
| TTCTGCGTTCAGCATTGCAT+TGG | - | chr1_4:55602469-55602488 | Msa0171090:three_prime_UTR | 45.0% | |
| ACACGCAAACACAGTAGATG+CGG | + | chr1_4:55602509-55602528 | None:intergenic | 45.0% | |
| ATGATGAATTGGGGAGAGGA+AGG | + | chr1_4:55602549-55602568 | None:intergenic | 45.0% | |
| TGGAATGATGAATTGGGGAG+AGG | + | chr1_4:55602553-55602572 | None:intergenic | 45.0% | |
| !! | TCCGTTCTGAGATTGTGGTT+CGG | + | chr1_4:55602634-55602653 | None:intergenic | 45.0% |
| ATGAGGATCAGGTTCGTGAT+TGG | + | chr1_4:55602679-55602698 | None:intergenic | 45.0% | |
| !! | TCGGGTTTTGATCCAGATTC+CGG | + | chr1_4:55602753-55602772 | None:intergenic | 45.0% |
| GGTTCAGAGGAAAACCTGTA+AGG | + | chr1_4:55602960-55602979 | None:intergenic | 45.0% | |
| CTGATCAAAGATGTTGTGGC+CGG | - | chr1_4:55603083-55603102 | Msa0171090:intron | 45.0% | |
| ACTGTGTTGGACCATCCATA+CGG | - | chr1_4:55603344-55603363 | Msa0171090:intron | 45.0% | |
| GTTCATACATGGCTTTCCTC+TGG | - | chr1_4:55603398-55603417 | Msa0171090:intron | 45.0% | |
| ! | GCTTTCCTCTGGCTTCAATA+CGG | - | chr1_4:55603409-55603428 | Msa0171090:intron | 45.0% |
| CTAATCCCACAGTCTAGAAG+CGG | + | chr1_4:55603439-55603458 | None:intergenic | 45.0% | |
| ! | GCTGTTGCTGTTGACTATCT+TGG | + | chr1_4:55603730-55603749 | None:intergenic | 45.0% |
| !! | GTTGTAGGTGTTGATGAGGA+GGG | - | chr1_4:55603791-55603810 | Msa0171090:CDS | 45.0% |
| !! | TTGTAGGTGTTGATGAGGAG+GGG | - | chr1_4:55603792-55603811 | Msa0171090:CDS | 45.0% |
| GAAGTGATTGTGGTACCTCT+TGG | + | chr1_4:55603849-55603868 | None:intergenic | 45.0% | |
| ! | GAGGTACCACAATCACTTCT+AGG | - | chr1_4:55603850-55603869 | Msa0171090:CDS | 45.0% |
| ATTAGGAACCCTCCCTATCA+TGG | - | chr1_4:55603921-55603940 | Msa0171090:intron | 45.0% | |
| TGCACTGTACAATTGGGCAT+TGG | - | chr1_4:55604066-55604085 | Msa0171090:intron | 45.0% | |
| !! | CAATTGGGCATTGGTACTTC+AGG | - | chr1_4:55604075-55604094 | Msa0171090:intron | 45.0% |
| CATTTGAGAGTTGGGTCCTT+TGG | - | chr1_4:55604356-55604375 | Msa0171090:intron | 45.0% | |
| TTGGTAAGAGAGGATGCATG+TGG | - | chr1_4:55604562-55604581 | Msa0171090:intron | 45.0% | |
| TAAGAGAGGATGCATGTGGA+TGG | - | chr1_4:55604566-55604585 | Msa0171090:intron | 45.0% | |
| !! | GAATGGTGGATCATGACAGA+AGG | - | chr1_4:55604663-55604682 | Msa0171090:CDS | 45.0% |
| AGACAGAGTTAGAGCCTGTT+TGG | - | chr1_4:55604828-55604847 | Msa0171090:intron | 45.0% | |
| CGAACTAATAAGGGCCAGTT+TGG | + | chr1_4:55605061-55605080 | None:intergenic | 45.0% | |
| AACTGGCCCTTATTAGTTCG+GGG | - | chr1_4:55605061-55605080 | Msa0171090:intron | 45.0% | |
| TAAGAAGAGGGGTTGTTGAG+AGG | - | chr1_4:55605122-55605141 | Msa0171090:intron | 45.0% | |
| AAGAAGAGGGGTTGTTGAGA+GGG | - | chr1_4:55605123-55605142 | Msa0171090:intron | 45.0% | |
| ATAAACCTCCCTATGCCCAA+TGG | + | chr1_4:55605179-55605198 | None:intergenic | 45.0% | |
| ATTGGGCATAGGGAGGTTTA+TGG | - | chr1_4:55605178-55605197 | Msa0171090:intron | 45.0% | |
| GCAGCATTGCGAAATTTCGA+AGG | + | chr1_4:55605205-55605224 | None:intergenic | 45.0% | |
| TGTTTGCATGCAGGAAAGTG+CGG | - | chr1_4:55605518-55605537 | Msa0171090:intron | 45.0% | |
| CATCATGTAGTGTGGGACAA+AGG | + | chr1_4:55605626-55605645 | None:intergenic | 45.0% | |
| !!! | CTAGTATTTTAGCTGTGCCC+AGG | + | chr1_4:55605741-55605760 | None:intergenic | 45.0% |
| TAAGCCTGGATACAGTCAGA+CGG | + | chr1_4:55606405-55606424 | None:intergenic | 45.0% | |
| TTGCCCAATTGTAGTAAGCC+TGG | + | chr1_4:55606419-55606438 | None:intergenic | 45.0% | |
| CAAAGGAAGCTGAAGAGCTA+TGG | - | chr1_4:55606475-55606494 | Msa0171090:intron | 45.0% | |
| AGCTGAAGAGCTATGGAAAC+AGG | - | chr1_4:55606482-55606501 | Msa0171090:intron | 45.0% | |
| AACATAGTTCCCTGTTGCCT+GGG | + | chr1_4:55606730-55606749 | None:intergenic | 45.0% | |
| TAACATAGTTCCCTGTTGCC+TGG | + | chr1_4:55606731-55606750 | None:intergenic | 45.0% | |
| !!! | GAGCTGGAGCTTTTAACTTC+TGG | - | chr1_4:55607259-55607278 | Msa0171090:intron | 45.0% |
| GTTCAAACACTAGGTGTGAC+TGG | - | chr1_4:55607495-55607514 | Msa0171090:intron | 45.0% | |
| TCAAACACTAGGTGTGACTG+GGG | - | chr1_4:55607497-55607516 | Msa0171090:intron | 45.0% | |
| ! | AATGGTTTCTCCGTTTTCGC+GGG | - | chr1_4:55607604-55607623 | Msa0171090:intron | 45.0% |
| ! | GGGAGCTTACAAGAGGTTTT+AGG | + | chr1_4:55607711-55607730 | None:intergenic | 45.0% |
| GGGTGCCAAAAACATCCTAT+TGG | - | chr1_4:55608122-55608141 | Msa0171090:intron | 45.0% | |
| AGTGCCAGCCGTGTAAAATT+TGG | - | chr1_4:55608362-55608381 | Msa0171090:intron | 45.0% | |
| AAGGAAGGGTTGCCAATTGT+GGG | - | chr1_4:55608544-55608563 | Msa0171090:intron | 45.0% | |
| AAGGAAGGGTTGCCAATTGT+GGG | - | chr1_4:55608544-55608563 | Msa0171090:intron | 45.0% | |
| CAATATTTGAAGGGGAGCCT+TGG | + | chr1_4:55608845-55608864 | None:intergenic | 45.0% | |
| TGTACGAACTGCTATCAGCA+AGG | - | chr1_4:55608993-55609012 | Msa0171090:intron | 45.0% | |
| CAAGATTGTAAATTGCCCGG+TGG | + | chr1_4:55609165-55609184 | None:intergenic | 45.0% | |
| CACCGGGCAATTTACAATCT+TGG | - | chr1_4:55609163-55609182 | Msa0171090:intron | 45.0% | |
| CATGTTACGCTCTGTTGTCT+TGG | - | chr1_4:55609233-55609252 | Msa0171090:intron | 45.0% | |
| ! | GCAGAGGACACTTTAAGAAC+AGG | - | chr1_4:55609326-55609345 | Msa0171090:intron | 45.0% |
| ! | GAGGACACTTTAAGAACAGG+GGG | - | chr1_4:55609329-55609348 | Msa0171090:intron | 45.0% |
| ! | AGGACACTTTAAGAACAGGG+GGG | - | chr1_4:55609330-55609349 | Msa0171090:intron | 45.0% |
| AGGTATATAGCAGTGCCTTG+CGG | - | chr1_4:55609636-55609655 | Msa0171090:intron | 45.0% | |
| !! | CCAACTTTAAGGTGTGGTAG+CGG | + | chr1_4:55609799-55609818 | None:intergenic | 45.0% |
| ATATTTAACCGCACCTCCTG+CGG | - | chr1_4:55609819-55609838 | Msa0171090:intron | 45.0% | |
| CGAAAAGCTTCAGCAGGTAA+TGG | - | chr1_4:55609897-55609916 | Msa0171090:intron | 45.0% | |
| ATTGGATAACCTCTAGGCTC+TGG | - | chr1_4:55609970-55609989 | Msa0171090:intron | 45.0% | |
| TTTCTCATACCAGAGCCTAG+AGG | + | chr1_4:55609982-55610001 | None:intergenic | 45.0% | |
| TTACATTCCTCCCTTCGTAC+AGG | - | chr1_4:55610024-55610043 | Msa0171090:intron | 45.0% | |
| CAAAGTCTCTCAACCAGATC+AGG | - | chr1_4:55610076-55610095 | Msa0171090:intron | 45.0% | |
| ATTCATGGCATCTCCTGATC+TGG | + | chr1_4:55610092-55610111 | None:intergenic | 45.0% | |
| AGATCAGGAGATGCCATGAA+TGG | - | chr1_4:55610091-55610110 | Msa0171090:intron | 45.0% | |
| GATCAGGAGATGCCATGAAT+GGG | - | chr1_4:55610092-55610111 | Msa0171090:intron | 45.0% | |
| ATCAGGAGATGCCATGAATG+GGG | - | chr1_4:55610093-55610112 | Msa0171090:intron | 45.0% | |
| GTTACAAGTTGTTGGGACTG+CGG | + | chr1_4:55610439-55610458 | None:intergenic | 45.0% | |
| GCACACCGTGCTTTGATATA+AGG | - | chr1_4:55610638-55610657 | Msa0171090:intron | 45.0% | |
| CAGTCACCCAGGAAATACAT+AGG | + | chr1_4:55610670-55610689 | None:intergenic | 45.0% | |
| CTATGTATTTCCTGGGTGAC+TGG | - | chr1_4:55610668-55610687 | Msa0171090:intron | 45.0% | |
| !! | TACATTGGTGTTGAGTCAGG+GGG | + | chr1_4:55610695-55610714 | None:intergenic | 45.0% |
| !! | TGCTGACTCTTGGGAATCAT+TGG | - | chr1_4:55610873-55610892 | Msa0171090:CDS | 45.0% |
| GACTCTTGGGAATCATTGGA+TGG | - | chr1_4:55610877-55610896 | Msa0171090:CDS | 45.0% | |
| CTTGGGAATCATTGGATGGA+TGG | - | chr1_4:55610881-55610900 | Msa0171090:CDS | 45.0% | |
| GCGAGGCAAAAGTGATGTAT+TGG | - | chr1_4:55610939-55610958 | Msa0171090:CDS | 45.0% | |
| ! | GGCAAAAGTGATGTATTGGC+GGG | - | chr1_4:55610943-55610962 | Msa0171090:CDS | 45.0% |
| ACGCAAACACAGTAGATGCG+GGG | + | chr1_4:55602507-55602526 | None:intergenic | 50.0% | |
| CACGCAAACACAGTAGATGC+GGG | + | chr1_4:55602508-55602527 | None:intergenic | 50.0% | |
| GGAGAGGAAGGAGTTTCGAT+CGG | + | chr1_4:55602537-55602556 | None:intergenic | 50.0% | |
| ! | TGAGATTGTGGTTCGGGTGA+TGG | + | chr1_4:55602627-55602646 | None:intergenic | 50.0% |
| !! | CCGTTCTGAGATTGTGGTTC+GGG | + | chr1_4:55602633-55602652 | None:intergenic | 50.0% |
| CCCGAACCACAATCTCAGAA+CGG | - | chr1_4:55602630-55602649 | Msa0171090:three_prime_UTR | 50.0% | |
| ! | TCGGTTTCTGGATGAGGATC+AGG | + | chr1_4:55602690-55602709 | None:intergenic | 50.0% |
| !! | TCTGGTTCGGTTTCTGGATG+AGG | + | chr1_4:55602696-55602715 | None:intergenic | 50.0% |
| !! | GGTTGTTCTGGTTCGGTTTC+TGG | + | chr1_4:55602702-55602721 | None:intergenic | 50.0% |
| GTACAACTGGAACCGGAATC+TGG | - | chr1_4:55602738-55602757 | Msa0171090:CDS | 50.0% | |
| CTGAGGATGCGGTGAAGAAT+TGG | + | chr1_4:55602841-55602860 | None:intergenic | 50.0% | |
| !! | CAACGTGTCGGTTGTGTTAG+TGG | - | chr1_4:55603172-55603191 | Msa0171090:intron | 50.0% |
| !! | AGAGCAAAGCACCGTATGGA+TGG | + | chr1_4:55603358-55603377 | None:intergenic | 50.0% |
| ATCCATACGGTGCTTTGCTC+TGG | - | chr1_4:55603357-55603376 | Msa0171090:intron | 50.0% | |
| !! | TAGACTGTGGGATTAGTCCC+CGG | - | chr1_4:55603443-55603462 | Msa0171090:CDS | 50.0% |
| !! | GATTAGTCCCCGGATTAGTC+CGG | - | chr1_4:55603453-55603472 | Msa0171090:CDS | 50.0% |
| !! | CAGCGTTGTAGGTGTTGATG+AGG | - | chr1_4:55603787-55603806 | Msa0171090:CDS | 50.0% |
| !! | CGTTGTAGGTGTTGATGAGG+AGG | - | chr1_4:55603790-55603809 | Msa0171090:CDS | 50.0% |
| TCTAGGTTCTACCTACCGCT+AGG | - | chr1_4:55603867-55603886 | Msa0171090:intron | 50.0% | |
| CAGAAATCCCCGCCATGATA+GGG | + | chr1_4:55603936-55603955 | None:intergenic | 50.0% | |
| TCAGAAATCCCCGCCATGAT+AGG | + | chr1_4:55603937-55603956 | None:intergenic | 50.0% | |
| ! | TGCTTTTGCTTCTCAGGGAC+AGG | - | chr1_4:55603959-55603978 | Msa0171090:intron | 50.0% |
| ! | GCTTTTGCTTCTCAGGGACA+GGG | - | chr1_4:55603960-55603979 | Msa0171090:intron | 50.0% |
| ! | CTTTTGCTTCTCAGGGACAG+GGG | - | chr1_4:55603961-55603980 | Msa0171090:intron | 50.0% |
| GGTATGCTGCTGCTATTGAG+AGG | - | chr1_4:55604026-55604045 | Msa0171090:intron | 50.0% | |
| AAGCTCTGTTCTTGGAGCTG+CGG | - | chr1_4:55604416-55604435 | Msa0171090:intron | 50.0% | |
| ! | GGCAGCATGGTGTTTTATGG+TGG | + | chr1_4:55604719-55604738 | None:intergenic | 50.0% |
| ! | GGTGGCAGCATGGTGTTTTA+TGG | + | chr1_4:55604722-55604741 | None:intergenic | 50.0% |
| TGCCACCGTCCTTCACAAAT+TGG | - | chr1_4:55604735-55604754 | Msa0171090:intron | 50.0% | |
| AGCCAATTTGTGAAGGACGG+TGG | + | chr1_4:55604740-55604759 | None:intergenic | 50.0% | |
| AGTTGAGGCCATTGGGCATA+GGG | - | chr1_4:55605168-55605187 | Msa0171090:intron | 50.0% | |
| AAATGAGCCGATAGCATGCC+TGG | - | chr1_4:55605720-55605739 | Msa0171090:intron | 50.0% | |
| AATGAGCCGATAGCATGCCT+GGG | - | chr1_4:55605721-55605740 | Msa0171090:intron | 50.0% | |
| GAGGGTCTGCAAACATATGC+AGG | - | chr1_4:55605833-55605852 | Msa0171090:intron | 50.0% | |
| AATCCCGTCTGACTGTATCC+AGG | - | chr1_4:55606398-55606417 | Msa0171090:intron | 50.0% | |
| AAGCCTGGATACAGTCAGAC+GGG | + | chr1_4:55606404-55606423 | None:intergenic | 50.0% | |
| TCTGATCGTGCAAAGATGCG+AGG | - | chr1_4:55606447-55606466 | Msa0171090:intron | 50.0% | |
| GCTCTTCAGCTTCCTTTGTG+CGG | + | chr1_4:55606473-55606492 | None:intergenic | 50.0% | |
| GAGGACTGTTCCAGTTGAGT+TGG | + | chr1_4:55606761-55606780 | None:intergenic | 50.0% | |
| ACTCAACTGGAACAGTCCTC+AGG | - | chr1_4:55606761-55606780 | Msa0171090:intron | 50.0% | |
| CTAGGTGTGACTGGGGTATA+TGG | - | chr1_4:55607504-55607523 | Msa0171090:intron | 50.0% | |
| GGCATATGGGAGCTTACAAG+AGG | + | chr1_4:55607718-55607737 | None:intergenic | 50.0% | |
| CAAGGAAGGGTTGCCAATTG+TGG | - | chr1_4:55608543-55608562 | Msa0171090:intron | 50.0% | |
| CAAGGAAGGGTTGCCAATTG+TGG | - | chr1_4:55608543-55608562 | Msa0171090:intron | 50.0% | |
| CTTCTCTCGAGCAGGAACAA+TGG | + | chr1_4:55608965-55608984 | None:intergenic | 50.0% | |
| ATATAGCAGTGCCTTGCGGT+TGG | - | chr1_4:55609640-55609659 | Msa0171090:intron | 50.0% | |
| CATAGATCGTACCAACCGCA+AGG | + | chr1_4:55609654-55609673 | None:intergenic | 50.0% | |
| ! | CTTGCGGTTGGTACGATCTA+TGG | - | chr1_4:55609652-55609671 | Msa0171090:intron | 50.0% |
| CCGCTACCACACCTTAAAGT+TGG | - | chr1_4:55609796-55609815 | Msa0171090:intron | 50.0% | |
| TATTTAACCGCACCTCCTGC+GGG | - | chr1_4:55609820-55609839 | Msa0171090:intron | 50.0% | |
| GGATCACGAAAAGCTTCAGC+AGG | - | chr1_4:55609891-55609910 | Msa0171090:intron | 50.0% | |
| ACTCTGGGTACCTGTACGAA+GGG | + | chr1_4:55610037-55610056 | None:intergenic | 50.0% | |
| AACTCTGGGTACCTGTACGA+AGG | + | chr1_4:55610038-55610057 | None:intergenic | 50.0% | |
| AGGTACCCAGAGTTGAACAG+AGG | - | chr1_4:55610044-55610063 | Msa0171090:intron | 50.0% | |
| GCTTGCCTCTGTTCAACTCT+GGG | + | chr1_4:55610052-55610071 | None:intergenic | 50.0% | |
| TGCTTGCCTCTGTTCAACTC+TGG | + | chr1_4:55610053-55610072 | None:intergenic | 50.0% | |
| TGGTGGAAACAGACCCTTGA+TGG | - | chr1_4:55610589-55610608 | Msa0171090:intron | 50.0% | |
| !! | ACATTGGTGTTGAGTCAGGG+GGG | + | chr1_4:55610694-55610713 | None:intergenic | 50.0% |
| GGAATCATTGGATGGATGGC+TGG | - | chr1_4:55610885-55610904 | Msa0171090:CDS | 50.0% | |
| CAAACACAGTAGATGCGGGG+AGG | + | chr1_4:55602504-55602523 | None:intergenic | 55.0% | |
| !! | GGTGCTCCGTTCTGAGATTG+TGG | + | chr1_4:55602639-55602658 | None:intergenic | 55.0% |
| ! | CACATGTCAGTGTCGGACAC+CGG | + | chr1_4:55603105-55603124 | None:intergenic | 55.0% |
| !! | AGCCAGAGCAAAGCACCGTA+TGG | + | chr1_4:55603362-55603381 | None:intergenic | 55.0% |
| GAGGACCGTATTGAAGCCAG+AGG | + | chr1_4:55603417-55603436 | None:intergenic | 55.0% | |
| GTCCTCCGCTTCTAGACTGT+GGG | - | chr1_4:55603431-55603450 | Msa0171090:intron | 55.0% | |
| ATCCCACAGTCTAGAAGCGG+AGG | + | chr1_4:55603436-55603455 | None:intergenic | 55.0% | |
| TGCCCAAAGCCGGACTAATC+CGG | + | chr1_4:55603465-55603484 | None:intergenic | 55.0% | |
| !! | TAGGTGTTGATGAGGAGGGG+CGG | - | chr1_4:55603795-55603814 | Msa0171090:CDS | 55.0% |
| AGGAACCCTCCCTATCATGG+CGG | - | chr1_4:55603924-55603943 | Msa0171090:intron | 55.0% | |
| AATCCCCGCCATGATAGGGA+GGG | + | chr1_4:55603932-55603951 | None:intergenic | 55.0% | |
| AAATCCCCGCCATGATAGGG+AGG | + | chr1_4:55603933-55603952 | None:intergenic | 55.0% | |
| ! | ATAGTTGGTGCCTTGGGAGC+TGG | - | chr1_4:55604265-55604284 | Msa0171090:CDS | 55.0% |
| AGCTCTGTTCTTGGAGCTGC+GGG | - | chr1_4:55604417-55604436 | Msa0171090:intron | 55.0% | |
| GAGTTGAGGCCATTGGGCAT+AGG | - | chr1_4:55605167-55605186 | Msa0171090:intron | 55.0% | |
| TAGTGTGGGACAAAGGCGAG+TGG | + | chr1_4:55605619-55605638 | None:intergenic | 55.0% | |
| AAAGATGCGAGGCCGCACAA+AGG | - | chr1_4:55606458-55606477 | Msa0171090:intron | 55.0% | |
| TAACTGGGGACTTGCGCTTC+AGG | - | chr1_4:55607000-55607019 | Msa0171090:intron | 55.0% | |
| TGCGTGTAGACCCGCGAAAA+CGG | + | chr1_4:55607617-55607636 | None:intergenic | 55.0% | |
| ATTTAACCGCACCTCCTGCG+GGG | - | chr1_4:55609821-55609840 | Msa0171090:intron | 55.0% | |
| GCTGATCTGACTTTGCCTCC+TGG | - | chr1_4:55610169-55610188 | Msa0171090:intron | 55.0% | |
| AGTTGTTGGGACTGCGGAAG+TGG | + | chr1_4:55610433-55610452 | None:intergenic | 55.0% | |
| CAAAGCACGGTGTGCACTAC+TGG | + | chr1_4:55610633-55610652 | None:intergenic | 55.0% | |
| GGTCCTCCGCTTCTAGACTG+TGG | - | chr1_4:55603430-55603449 | Msa0171090:intron | 60.0% | |
| !! | TCCCCGGATTAGTCCGGCTT+TGG | - | chr1_4:55603459-55603478 | Msa0171090:CDS | 60.0% |
| CCCAAAGCCGGACTAATCCG+GGG | + | chr1_4:55603463-55603482 | None:intergenic | 60.0% | |
| !! | CCCCGGATTAGTCCGGCTTT+GGG | - | chr1_4:55603460-55603479 | Msa0171090:CDS | 60.0% |
| GCCCAAAGCCGGACTAATCC+GGG | + | chr1_4:55603464-55603483 | None:intergenic | 60.0% | |
| !! | GGATTAGTCCGGCTTTGGGC+AGG | - | chr1_4:55603464-55603483 | Msa0171090:CDS | 60.0% |
| CTCGGTATCCTGCCCAAAGC+CGG | + | chr1_4:55603475-55603494 | None:intergenic | 60.0% | |
| TTGATGAGGAGGGGCGGTCT+AGG | - | chr1_4:55603801-55603820 | Msa0171090:CDS | 60.0% | |
| GGAACCCTCCCTATCATGGC+GGG | - | chr1_4:55603925-55603944 | Msa0171090:intron | 60.0% | |
| GAACCCTCCCTATCATGGCG+GGG | - | chr1_4:55603926-55603945 | Msa0171090:intron | 60.0% | |
| GCTCTGTTCTTGGAGCTGCG+GGG | - | chr1_4:55604418-55604437 | Msa0171090:intron | 60.0% | |
| TGTGAAGGACGGTGGCAGCA+TGG | + | chr1_4:55604732-55604751 | None:intergenic | 60.0% | |
| TGAGGCCATTGGGCATAGGG+AGG | - | chr1_4:55605171-55605190 | Msa0171090:intron | 60.0% | |
| GCTGTGCCCAGGCATGCTAT+CGG | + | chr1_4:55605730-55605749 | None:intergenic | 60.0% | |
| TTTAACCGCACCTCCTGCGG+GGG | - | chr1_4:55609822-55609841 | Msa0171090:intron | 60.0% | |
| CTGGGTACCTGTACGAAGGG+AGG | + | chr1_4:55610034-55610053 | None:intergenic | 60.0% | |
| CTGACTTTGCCTCCTGGTGC+TGG | - | chr1_4:55610175-55610194 | Msa0171090:intron | 60.0% | |
| TCAATGCAGAGGCCAGCACC+AGG | + | chr1_4:55610190-55610209 | None:intergenic | 60.0% | |
| AGGAGGGGCGGTCTAGGCAA+CGG | - | chr1_4:55603807-55603826 | Msa0171090:CDS | 65.0% | |
| TATTGCCCCCGCAGGAGGTG+CGG | + | chr1_4:55609830-55609849 | None:intergenic | 65.0% | |
| GCAACTATTGCCCCCGCAGG+AGG | + | chr1_4:55609835-55609854 | None:intergenic | 65.0% | |
| GGTGCAACTATTGCCCCCGC+AGG | + | chr1_4:55609838-55609857 | None:intergenic | 65.0% | |
| ATGCAGAGGCCAGCACCAGG+AGG | + | chr1_4:55610187-55610206 | None:intergenic | 65.0% | |
| GTCAGGGGGGCCAGTCACCC+AGG | + | chr1_4:55610681-55610700 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55602463 | 55611203 | 55602463 | ID=Msa0171090;Name=Msa0171090 |
| chr1_4 | mRNA | 55602463 | 55611203 | 55602463 | ID=Msa0171090-mRNA-1;Parent=Msa0171090;Name=Msa0171090-mRNA-1;_AED=0.16;_eAED=0.16;_QI=128|0.91|1|1|0.91|1|13|222|478 |
| chr1_4 | exon | 55602463 | 55602795 | 55602463 | ID=Msa0171090-mRNA-1:exon:16684;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55603432 | 55603620 | 55603432 | ID=Msa0171090-mRNA-1:exon:16683;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55603754 | 55603873 | 55603754 | ID=Msa0171090-mRNA-1:exon:16682;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55603993 | 55604028 | 55603993 | ID=Msa0171090-mRNA-1:exon:16681;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55604221 | 55604349 | 55604221 | ID=Msa0171090-mRNA-1:exon:16680;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55604471 | 55604536 | 55604471 | ID=Msa0171090-mRNA-1:exon:16679;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55604652 | 55604714 | 55604652 | ID=Msa0171090-mRNA-1:exon:16678;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55606645 | 55606674 | 55606645 | ID=Msa0171090-mRNA-1:exon:16677;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55606884 | 55606934 | 55606884 | ID=Msa0171090-mRNA-1:exon:16676;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55607163 | 55607246 | 55607163 | ID=Msa0171090-mRNA-1:exon:16675;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55608022 | 55608135 | 55608022 | ID=Msa0171090-mRNA-1:exon:16674;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55609570 | 55609639 | 55609570 | ID=Msa0171090-mRNA-1:exon:16673;Parent=Msa0171090-mRNA-1 |
| chr1_4 | exon | 55610702 | 55611203 | 55610702 | ID=Msa0171090-mRNA-1:exon:16672;Parent=Msa0171090-mRNA-1 |
| chr1_4 | five_prime_UTR | 55611076 | 55611203 | 55611076 | ID=Msa0171090-mRNA-1:five_prime_utr;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55610702 | 55611075 | 55610702 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55609570 | 55609639 | 55609570 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55608022 | 55608135 | 55608022 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55607163 | 55607246 | 55607163 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55606884 | 55606934 | 55606884 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55606645 | 55606674 | 55606645 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55604652 | 55604714 | 55604652 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55604471 | 55604536 | 55604471 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55604221 | 55604349 | 55604221 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55603993 | 55604028 | 55603993 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55603754 | 55603873 | 55603754 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55603432 | 55603620 | 55603432 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | CDS | 55602685 | 55602795 | 55602685 | ID=Msa0171090-mRNA-1:cds;Parent=Msa0171090-mRNA-1 |
| chr1_4 | three_prime_UTR | 55602463 | 55602684 | 55602463 | ID=Msa0171090-mRNA-1:three_prime_utr;Parent=Msa0171090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
