Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172910 | XP_003591162.2 | 91.830 | 306 | 9 | 3 | 1 | 290 | 1 | 306 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172910 | G7I8R3 | 91.830 | 306 | 9 | 3 | 1 | 290 | 1 | 306 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172910 | Msa0230500 | 0.946093 | 8.897875e-105 | -8.615850e-47 |
| Msa0172910 | Msa1111900 | 0.810459 | 1.140518e-50 | -8.615850e-47 |
| Msa0172910 | Msa1133760 | 0.803775 | 2.967188e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172910 | MtrunA17_Chr1g0192261 | 91.830 | 306 | 9 | 3 | 1 | 290 | 1 | 306 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172910 | AT5G27830.1 | 47.212 | 269 | 115 | 9 | 25 | 270 | 16 | 280 | 3.49e-66 | 209 |
| Msa0172910 | AT5G27830.5 | 47.426 | 272 | 113 | 9 | 25 | 270 | 16 | 283 | 1.16e-65 | 207 |
| Msa0172910 | AT5G27830.6 | 48.594 | 249 | 105 | 7 | 41 | 270 | 12 | 256 | 4.30e-64 | 203 |
| Msa0172910 | AT5G27830.3 | 48.425 | 254 | 106 | 8 | 38 | 270 | 33 | 282 | 4.74e-64 | 204 |
| Msa0172910 | AT5G27830.4 | 48.638 | 257 | 104 | 8 | 38 | 270 | 50 | 302 | 2.18e-63 | 202 |
| Msa0172910 | AT5G27830.2 | 42.912 | 261 | 109 | 8 | 25 | 270 | 16 | 251 | 2.64e-53 | 175 |
Find 103 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTATAGCTGCTAGTTTC+TGG | 0.166545 | 1_4:+58095469 | None:intergenic |
| CACCGAGTTCTCCCCTTTCT+TGG | 0.217053 | 1_4:+58096206 | None:intergenic |
| GCCCAGAGTGTTTGCACTTA+TGG | 0.217277 | 1_4:-58096929 | Msa0172910:CDS |
| ATAGAAATTTGCACCTAGTT+TGG | 0.257794 | 1_4:-58098322 | Msa0172910:five_prime_UTR |
| CTTCAAATGCTCCAGAAATT+AGG | 0.261583 | 1_4:-58095404 | Msa0172910:CDS |
| AAACTAGGTGCAAATTTCTA+TGG | 0.264467 | 1_4:+58098324 | None:intergenic |
| CCCAGAGTGTTTGCACTTAT+GGG | 0.273771 | 1_4:-58096928 | Msa0172910:CDS |
| TGCTCAGTTTAACAGGAATA+AGG | 0.288901 | 1_4:+58095141 | None:intergenic |
| GTTTCATTGCTCAGTTTAAC+AGG | 0.303515 | 1_4:+58095134 | None:intergenic |
| TTTGCACTTATGGGAACTAT+TGG | 0.308596 | 1_4:-58096919 | Msa0172910:CDS |
| GAGAGAGTTTCTTGGGCTAT+AGG | 0.310193 | 1_4:-58096138 | Msa0172910:CDS |
| AATTAGATGTGGTAATTTAT+AGG | 0.312425 | 1_4:-58095329 | Msa0172910:three_prime_UTR |
| CTCGAATGCTTACTTCTCTA+TGG | 0.317847 | 1_4:-58096808 | Msa0172910:CDS |
| AAGTTTCTTCTGAGGCAATA+TGG | 0.327699 | 1_4:+58096298 | None:intergenic |
| CGACAAAGGGTCAAATCTTT+AGG | 0.332368 | 1_4:+58097041 | None:intergenic |
| TCAGCTCGGAGCCAATAAAA+TGG | 0.336611 | 1_4:-58098203 | Msa0172910:CDS |
| AATAATCTAAATGAAGTATA+TGG | 0.350080 | 1_4:-58095277 | Msa0172910:three_prime_UTR |
| CAAATCTTTAGGACCCCTTT+TGG | 0.350636 | 1_4:+58097052 | None:intergenic |
| TAGAAATTTGCACCTAGTTT+GGG | 0.352016 | 1_4:-58098321 | Msa0172910:five_prime_UTR |
| TAGGTTCAGTTGCTGATTCA+TGG | 0.360109 | 1_4:-58096251 | Msa0172910:CDS |
| CATTCAAAGAGAGAGTTTCT+TGG | 0.364061 | 1_4:-58096146 | Msa0172910:CDS |
| GCATATCCCTCGTCCATTGC+TGG | 0.365104 | 1_4:+58096169 | None:intergenic |
| CTAATTTCTGGAGCATTTGA+AGG | 0.381530 | 1_4:+58095405 | None:intergenic |
| AAGAGTGAGGAAGGTAGATA+TGG | 0.382104 | 1_4:+58098149 | None:intergenic |
| TCTGTAAGGAAGCTTTCTTC+TGG | 0.399762 | 1_4:-58096963 | Msa0172910:CDS |
| AAAGCGCACCGCAAGGAAGC+TGG | 0.402682 | 1_4:-58095451 | Msa0172910:CDS |
| CATAACATAACATATGGTTC+TGG | 0.408210 | 1_4:-58098287 | Msa0172910:five_prime_UTR |
| CAGTTTGAGTCGACCAAGAA+AGG | 0.416167 | 1_4:-58096219 | Msa0172910:CDS |
| TGCACAAATTAGTGGAGGTC+CGG | 0.422044 | 1_4:+58096860 | None:intergenic |
| CATAAAGATGCACAAATTAG+TGG | 0.429471 | 1_4:+58096852 | None:intergenic |
| ATGTGGTAGGGCTGCTGAAT+GGG | 0.429705 | 1_4:-58096382 | Msa0172910:CDS |
| ATCTACCTTCCTCACTCTTA+CGG | 0.430774 | 1_4:-58098145 | Msa0172910:intron |
| TATGTGGTAGGGCTGCTGAA+TGG | 0.432258 | 1_4:-58096383 | Msa0172910:CDS |
| ATTCAAAGAGAGAGTTTCTT+GGG | 0.437639 | 1_4:-58096145 | Msa0172910:CDS |
| AGGGTTACCCTCTGATTTGA+AGG | 0.438690 | 1_4:+58097076 | None:intergenic |
| CTAAAGATTTGACCCTTTGT+CGG | 0.441679 | 1_4:-58097040 | Msa0172910:CDS |
| CCGCAAGGAAGCTGGGAAGC+AGG | 0.444022 | 1_4:-58095443 | Msa0172910:CDS |
| TTTATGTGAGAGAATTTATG+AGG | 0.444154 | 1_4:-58096835 | Msa0172910:CDS |
| TGAGAAACACACACTCCATT+GGG | 0.450670 | 1_4:+58097116 | None:intergenic |
| TAAAGATTTGACCCTTTGTC+GGG | 0.451109 | 1_4:-58097039 | Msa0172910:intron |
| TTCTTGGGCTATAGGAGGGA+TGG | 0.460978 | 1_4:-58096130 | Msa0172910:CDS |
| TTCCTTACAGACAGCAGTGC+AGG | 0.465534 | 1_4:+58096975 | None:intergenic |
| TCCCATAAGTGCAAACACTC+TGG | 0.467096 | 1_4:+58096927 | None:intergenic |
| AGAGGGTAACCCTGCCAAAA+GGG | 0.472309 | 1_4:-58097066 | Msa0172910:CDS |
| ATCCTGCACTGCTGTCTGTA+AGG | 0.472662 | 1_4:-58096977 | Msa0172910:CDS |
| CAGAGGGTAACCCTGCCAAA+AGG | 0.475029 | 1_4:-58097067 | Msa0172910:CDS |
| TTGAGAAACACACACTCCAT+TGG | 0.476677 | 1_4:+58097115 | None:intergenic |
| CAAGAAACTCTCTCTTTGAA+TGG | 0.480127 | 1_4:+58096147 | None:intergenic |
| TCGTAACATAACATAACATA+TGG | 0.480880 | 1_4:-58098293 | Msa0172910:five_prime_UTR |
| TAAGGAAGCTTTCTTCTGGC+GGG | 0.481937 | 1_4:-58096959 | Msa0172910:CDS |
| CTGGAAACTTGATGAAATCA+AGG | 0.485445 | 1_4:-58098268 | Msa0172910:five_prime_UTR |
| ACATACAAAGAGCTCTCATC+AGG | 0.489068 | 1_4:+58095371 | None:intergenic |
| ACCAACACGTGGATCACATA+TGG | 0.489325 | 1_4:+58096890 | None:intergenic |
| TAGCTGCTAGTTTCTGGCGT+TGG | 0.499515 | 1_4:+58095475 | None:intergenic |
| GAGGAAGGTAGATATGGAAG+AGG | 0.504318 | 1_4:+58098155 | None:intergenic |
| CCCATAAGTGCAAACACTCT+GGG | 0.507480 | 1_4:+58096928 | None:intergenic |
| TACAAAGTCATTTACTCCAC+AGG | 0.507812 | 1_4:+58096404 | None:intergenic |
| AGTTTGAGTCGACCAAGAAA+GGG | 0.513976 | 1_4:-58096218 | Msa0172910:CDS |
| AGAGTTTCTTGGGCTATAGG+AGG | 0.517076 | 1_4:-58096135 | Msa0172910:CDS |
| GAAGGTAGATATGGAAGAGG+AGG | 0.522834 | 1_4:+58098158 | None:intergenic |
| GCACAAATTAGTGGAGGTCC+GGG | 0.524054 | 1_4:+58096861 | None:intergenic |
| GGAGGGATGGTTCTAACAGC+AGG | 0.532958 | 1_4:-58096117 | Msa0172910:CDS |
| AAGCGCACCGCAAGGAAGCT+GGG | 0.537264 | 1_4:-58095450 | Msa0172910:CDS |
| ACGATTTCCAGCAATGGACG+AGG | 0.538420 | 1_4:-58096176 | Msa0172910:CDS |
| TCAAGGTCACACTCGTAGAA+TGG | 0.542732 | 1_4:-58098251 | Msa0172910:exon |
| TTCAGTTGCTGATTCATGGA+AGG | 0.543140 | 1_4:-58096247 | Msa0172910:CDS |
| GTTACGACTCAACCCAAACT+AGG | 0.546045 | 1_4:+58098309 | None:intergenic |
| TAAATGACTTTGTATGTGGT+AGG | 0.546831 | 1_4:-58096395 | Msa0172910:CDS |
| CCACGTGTTGGTACTCAGCC+CGG | 0.549087 | 1_4:-58096879 | Msa0172910:CDS |
| CAGCTATAAAGCGCACCGCA+AGG | 0.550066 | 1_4:-58095458 | Msa0172910:CDS |
| CTCTATGGATGTGAAATCAC+AGG | 0.553606 | 1_4:-58096793 | Msa0172910:intron |
| AGGAAAGAACCGAGAAAGCA+AGG | 0.556550 | 1_4:+58095241 | None:intergenic |
| GTAAGGAAGCTTTCTTCTGG+CGG | 0.556963 | 1_4:-58096960 | Msa0172910:CDS |
| GGAAGAGGAGGAGCAAAAGA+AGG | 0.560607 | 1_4:+58098170 | None:intergenic |
| GACCAAGAAAGGGGAGAACT+CGG | 0.570667 | 1_4:-58096208 | Msa0172910:CDS |
| AAGGAAGCTGGGAAGCAGGA+TGG | 0.573269 | 1_4:-58095439 | Msa0172910:CDS |
| CTTTCCTCCCTTCAAATCAG+AGG | 0.575797 | 1_4:-58097084 | Msa0172910:CDS |
| TATGGTGATAAAGCAAGTCT+AGG | 0.585323 | 1_4:-58096270 | Msa0172910:CDS |
| ATGAACCGTAAGAGTGAGGA+AGG | 0.586341 | 1_4:+58098140 | None:intergenic |
| CCTGCTTCCCAGCTTCCTTG+CGG | 0.589880 | 1_4:+58095443 | None:intergenic |
| TTTCCTCCCTTCAAATCAGA+GGG | 0.593855 | 1_4:-58097083 | Msa0172910:CDS |
| GAGTTTCTTGGGCTATAGGA+GGG | 0.594455 | 1_4:-58096134 | Msa0172910:CDS |
| CGGAATGCAGGTAAACCCAA+TGG | 0.599107 | 1_4:-58097131 | Msa0172910:intron |
| GGGTTACCCTCTGATTTGAA+GGG | 0.599972 | 1_4:+58097077 | None:intergenic |
| GCTGCTGAATGGGTCTCCAA+TGG | 0.609525 | 1_4:-58096372 | Msa0172910:intron |
| TTACCCTCTGATTTGAAGGG+AGG | 0.609671 | 1_4:+58097080 | None:intergenic |
| ATATGGAAGCACTCTCAGCT+CGG | 0.619453 | 1_4:-58098217 | Msa0172910:CDS |
| GAGGGTAACCCTGCCAAAAG+GGG | 0.625915 | 1_4:-58097065 | Msa0172910:CDS |
| CACCAGGTTCTTGCACCCTG+TGG | 0.628381 | 1_4:-58096420 | Msa0172910:intron |
| AAGGAAGCTTTCTTCTGGCG+GGG | 0.630004 | 1_4:-58096958 | Msa0172910:CDS |
| AAATGACTTTGTATGTGGTA+GGG | 0.634779 | 1_4:-58096394 | Msa0172910:CDS |
| CGATTTCCAGCAATGGACGA+GGG | 0.639402 | 1_4:-58096175 | Msa0172910:CDS |
| GGTAATGAACCGTAAGAGTG+AGG | 0.640349 | 1_4:+58098136 | None:intergenic |
| TAACAATACATAATTAGATG+TGG | 0.646300 | 1_4:-58095340 | Msa0172910:three_prime_UTR |
| AATGGAGTGTGTGTTTCTCA+AGG | 0.655392 | 1_4:-58097113 | Msa0172910:CDS |
| GTTTGAGTCGACCAAGAAAG+GGG | 0.658556 | 1_4:-58096217 | Msa0172910:CDS |
| ACAAAGTCATTTACTCCACA+GGG | 0.664354 | 1_4:+58096405 | None:intergenic |
| GGAGTAAATGACTTTGTATG+TGG | 0.664398 | 1_4:-58096399 | Msa0172910:CDS |
| GAAGCTGGGAAGCAGGATGG+CGG | 0.665851 | 1_4:-58095436 | Msa0172910:CDS |
| CCGGGCTGAGTACCAACACG+TGG | 0.666869 | 1_4:+58096879 | None:intergenic |
| AAAGATGCACAAATTAGTGG+AGG | 0.670310 | 1_4:+58096855 | None:intergenic |
| GCCATATGTGATCCACGTGT+TGG | 0.670501 | 1_4:-58096891 | Msa0172910:CDS |
| GGAGTGTGTGTTTCTCAAGG+TGG | 0.720427 | 1_4:-58097110 | Msa0172910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTAAACAAAAAAAAT+GGG | - | chr1_4:58095673-58095692 | Msa0172910:intron | 10.0% |
| !! | TGTAGATATAAATATAAAAT+AGG | + | chr1_4:58098056-58098075 | None:intergenic | 10.0% |
| !! | TAAAAAATTGAAAAATTTCC+GGG | + | chr1_4:58095533-58095552 | None:intergenic | 15.0% |
| !! | GTAAAAAATTGAAAAATTTC+CGG | + | chr1_4:58095534-58095553 | None:intergenic | 15.0% |
| !!! | GATTTTGTAAACAAAAAAAA+TGG | - | chr1_4:58095672-58095691 | Msa0172910:intron | 15.0% |
| !!! | GTTTTAAAACAATCAAAATA+TGG | + | chr1_4:58097144-58097163 | None:intergenic | 15.0% |
| !!! | CATTTATGTATTTTTTTATC+AGG | - | chr1_4:58097552-58097571 | Msa0172910:intron | 15.0% |
| !! | AATAATCTAAATGAAGTATA+TGG | - | chr1_4:58098306-58098325 | Msa0172910:five_prime_UTR | 15.0% |
| !! | TCAAAAAACTAAATGAAAAA+TGG | + | chr1_4:58098370-58098389 | None:intergenic | 15.0% |
| !! | GAATAAACAAAAATCAATAC+CGG | - | chr1_4:58095175-58095194 | Msa0172910:three_prime_UTR | 20.0% |
| !! | AATAAACAAAAATCAATACC+GGG | - | chr1_4:58095176-58095195 | Msa0172910:three_prime_UTR | 20.0% |
| !! | GTAATTGTATTTACATAGTT+AGG | - | chr1_4:58095487-58095506 | Msa0172910:CDS | 20.0% |
| !! | AGTTAACTAGAGTAATATAA+CGG | + | chr1_4:58095604-58095623 | None:intergenic | 20.0% |
| !!! | AAACAAAAAAAATGGGTTTT+TGG | - | chr1_4:58095680-58095699 | Msa0172910:intron | 20.0% |
| !! | CATCATAAAACTAACAATTA+CGG | + | chr1_4:58095928-58095947 | None:intergenic | 20.0% |
| !!! | TTGAATAATTTTCCTTGTAA+AGG | + | chr1_4:58095992-58096011 | None:intergenic | 20.0% |
| !! | AAAATTACTAACTAAACTAC+CGG | + | chr1_4:58096025-58096044 | None:intergenic | 20.0% |
| !! | TATTAATATGTATCCAAACA+TGG | + | chr1_4:58096078-58096097 | None:intergenic | 20.0% |
| !! | TTGGTATAAGTTAAGATTAA+AGG | + | chr1_4:58096371-58096390 | None:intergenic | 20.0% |
| !! | AATCTTAACTTATACCAAAA+TGG | - | chr1_4:58096373-58096392 | Msa0172910:CDS | 20.0% |
| !! | TTTAATAATTGGAAGGAAAA+AGG | + | chr1_4:58097520-58097539 | None:intergenic | 20.0% |
| !!! | TTTTCCTTCCAATTATTAAA+TGG | - | chr1_4:58097520-58097539 | Msa0172910:intron | 20.0% |
| !!! | TCCATAAGTTTTTAAATAGT+GGG | + | chr1_4:58097927-58097946 | None:intergenic | 20.0% |
| !!! | TTCCATAAGTTTTTAAATAG+TGG | + | chr1_4:58097928-58097947 | None:intergenic | 20.0% |
| !! | TGATATCTTTATCTTATTCT+TGG | - | chr1_4:58098023-58098042 | Msa0172910:intron | 20.0% |
| !! | TAACAATACATAATTAGATG+TGG | - | chr1_4:58098243-58098262 | Msa0172910:exon | 20.0% |
| !! | AATTAGATGTGGTAATTTAT+AGG | - | chr1_4:58098254-58098273 | Msa0172910:exon | 20.0% |
| !! | AAACTAAATGAAAAATGGAA+AGG | + | chr1_4:58098365-58098384 | None:intergenic | 20.0% |
| ! | TCGTAACATAACATAACATA+TGG | - | chr1_4:58095290-58095309 | Msa0172910:three_prime_UTR | 25.0% |
| ! | ATTACTCTAGTTAACTATGA+AGG | - | chr1_4:58095608-58095627 | Msa0172910:intron | 25.0% |
| !!! | GAGGTTTTAACTTTTGTATA+GGG | - | chr1_4:58095702-58095721 | Msa0172910:intron | 25.0% |
| !!! | AGGTTTTAACTTTTGTATAG+GGG | - | chr1_4:58095703-58095722 | Msa0172910:intron | 25.0% |
| !!! | TTCAAGTTTTTTCCTTTACA+AGG | - | chr1_4:58095977-58095996 | Msa0172910:intron | 25.0% |
| ! | AAATTACTAACTAAACTACC+GGG | + | chr1_4:58096024-58096043 | None:intergenic | 25.0% |
| !! | TTAGTTAGTAATTTTGTAGC+AGG | - | chr1_4:58096030-58096049 | Msa0172910:intron | 25.0% |
| ! | TAACTTATAATAGCCATGTT+TGG | - | chr1_4:58096062-58096081 | Msa0172910:intron | 25.0% |
| !!! | AAAGACAAAAGGTATCATAA+GGG | + | chr1_4:58096267-58096286 | None:intergenic | 25.0% |
| ! | ATTGGTAAATGAAAGACAAA+AGG | + | chr1_4:58096278-58096297 | None:intergenic | 25.0% |
| ! | TTTATGTGAGAGAATTTATG+AGG | - | chr1_4:58096748-58096767 | Msa0172910:intron | 25.0% |
| ! | TAAACTGAATGACTAATTAC+TGG | + | chr1_4:58096924-58096943 | None:intergenic | 25.0% |
| !!! | TTACATTTTTAAGCATTCGT+AGG | - | chr1_4:58096941-58096960 | Msa0172910:CDS | 25.0% |
| !! | TATTTGTGCCTTTATTTGAT+AGG | - | chr1_4:58096969-58096988 | Msa0172910:CDS | 25.0% |
| ! | AATTCTGTCCTATCAAATAA+AGG | + | chr1_4:58096980-58096999 | None:intergenic | 25.0% |
| ! | TTTATTTGATAGGACAGAAT+TGG | - | chr1_4:58096979-58096998 | Msa0172910:CDS | 25.0% |
| ! | CTACTTAACAGAAATACTTA+TGG | + | chr1_4:58097055-58097074 | None:intergenic | 25.0% |
| !!! | ATTTATCTTTTGAGACAAGA+TGG | - | chr1_4:58097094-58097113 | Msa0172910:CDS | 25.0% |
| ! | ACAATCAAAATATGGATGTA+AGG | + | chr1_4:58097136-58097155 | None:intergenic | 25.0% |
| !!! | TTTGATTGTTTTAAAACACC+AGG | - | chr1_4:58097147-58097166 | Msa0172910:intron | 25.0% |
| !!! | TTTTTTATCAGGTCAATCTT+AGG | - | chr1_4:58097563-58097582 | Msa0172910:intron | 25.0% |
| ! | TACAAAATATTGCCAAATAG+TGG | + | chr1_4:58097670-58097689 | None:intergenic | 25.0% |
| ! | ACCCACTATTTAAAAACTTA+TGG | - | chr1_4:58097923-58097942 | Msa0172910:intron | 25.0% |
| !!! | TTTGATTTGATGTTTCCAAT+AGG | - | chr1_4:58097964-58097983 | Msa0172910:intron | 25.0% |
| !! | GAAATTCTTTTCCTAATTTC+TGG | + | chr1_4:58098193-58098212 | None:intergenic | 25.0% |
| !! | TGATATTTTCCCTTACAAAA+TGG | - | chr1_4:58098391-58098410 | Msa0172910:five_prime_UTR | 25.0% |
| !! | AAAAACACACCATTTTGTAA+GGG | + | chr1_4:58098403-58098422 | None:intergenic | 25.0% |
| !! | AAAAAACACACCATTTTGTA+AGG | + | chr1_4:58098404-58098423 | None:intergenic | 25.0% |
| !! | TTGTTTTTCTTTTGTTGACC+CGG | + | chr1_4:58095197-58095216 | None:intergenic | 30.0% |
| AAACTAGGTGCAAATTTCTA+TGG | + | chr1_4:58095262-58095281 | None:intergenic | 30.0% | |
| ATAGAAATTTGCACCTAGTT+TGG | - | chr1_4:58095261-58095280 | Msa0172910:three_prime_UTR | 30.0% | |
| TAGAAATTTGCACCTAGTTT+GGG | - | chr1_4:58095262-58095281 | Msa0172910:three_prime_UTR | 30.0% | |
| CATAACATAACATATGGTTC+TGG | - | chr1_4:58095296-58095315 | Msa0172910:three_prime_UTR | 30.0% | |
| !!! | ACCTATGCTGTTTTTTGATT+TGG | - | chr1_4:58095555-58095574 | Msa0172910:intron | 30.0% |
| ACCAAATCAAAAAACAGCAT+AGG | + | chr1_4:58095559-58095578 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTTGATTTGGTTT+CGG | - | chr1_4:58095561-58095580 | Msa0172910:intron | 30.0% |
| !!! | TTTTTGATTTGGTTTCGGAT+CGG | - | chr1_4:58095566-58095585 | Msa0172910:intron | 30.0% |
| GGTTCGATTAAGATTAAGAT+TGG | + | chr1_4:58095634-58095653 | None:intergenic | 30.0% | |
| CTTAATCTTAATCGAACCAA+TGG | - | chr1_4:58095636-58095655 | Msa0172910:intron | 30.0% | |
| !! | CAAAAAAAATGGGTTTTTGG+AGG | - | chr1_4:58095683-58095702 | Msa0172910:intron | 30.0% |
| !!! | GGAGGTTTTAACTTTTGTAT+AGG | - | chr1_4:58095701-58095720 | Msa0172910:intron | 30.0% |
| ATTATTCAAGATGAAATCCC+CGG | - | chr1_4:58096003-58096022 | Msa0172910:intron | 30.0% | |
| AATTACTAACTAAACTACCG+GGG | + | chr1_4:58096023-58096042 | None:intergenic | 30.0% | |
| GGATACATATTAATAATCCG+CGG | - | chr1_4:58096083-58096102 | Msa0172910:intron | 30.0% | |
| AAAGACTATTAAAACTACCG+CGG | + | chr1_4:58096103-58096122 | None:intergenic | 30.0% | |
| !!! | CGGTAGTTTTAATAGTCTTT+CGG | - | chr1_4:58096103-58096122 | Msa0172910:intron | 30.0% |
| !! | GGATTAGTTAAGATGAAAAC+AGG | + | chr1_4:58096134-58096153 | None:intergenic | 30.0% |
| ! | GTTTTCATCTTAACTAATCC+CGG | - | chr1_4:58096134-58096153 | Msa0172910:CDS | 30.0% |
| TCTACTAGTCATATTAAGAC+CGG | + | chr1_4:58096156-58096175 | None:intergenic | 30.0% | |
| ATTCTAGGTATGAATAAACC+TGG | + | chr1_4:58096182-58096201 | None:intergenic | 30.0% | |
| !! | ACCTAGAATATGCTTTAAAG+AGG | - | chr1_4:58096193-58096212 | Msa0172910:CDS | 30.0% |
| !! | ACCTCTTTAAAGCATATTCT+AGG | + | chr1_4:58096197-58096216 | None:intergenic | 30.0% |
| !! | GAAAGACAAAAGGTATCATA+AGG | + | chr1_4:58096268-58096287 | None:intergenic | 30.0% |
| CATTTACCAATACAGTTAAC+CGG | - | chr1_4:58096287-58096306 | Msa0172910:CDS | 30.0% | |
| AGGAGAAGAATTTGAAAACT+AGG | + | chr1_4:58096351-58096370 | None:intergenic | 30.0% | |
| ! | AAAGATTATCATGGCCATTT+TGG | + | chr1_4:58096390-58096409 | None:intergenic | 30.0% |
| AAATGGCCATGATAATCTTT+AGG | - | chr1_4:58096390-58096409 | Msa0172910:CDS | 30.0% | |
| AATGGCCATGATAATCTTTA+GGG | - | chr1_4:58096391-58096410 | Msa0172910:CDS | 30.0% | |
| CATAAAGATGCACAAATTAG+TGG | + | chr1_4:58096734-58096753 | None:intergenic | 30.0% | |
| ! | ATGTGAAATCACAGGTATTT+TGG | - | chr1_4:58096798-58096817 | Msa0172910:CDS | 30.0% |
| TATCATGGAAAGAAGTTTAG+AGG | - | chr1_4:58096852-58096871 | Msa0172910:CDS | 30.0% | |
| AGAGGTCTTTATATATGTGA+CGG | - | chr1_4:58096870-58096889 | Msa0172910:CDS | 30.0% | |
| TAAATGACTTTGTATGTGGT+AGG | - | chr1_4:58097188-58097207 | Msa0172910:intron | 30.0% | |
| AAATGACTTTGTATGTGGTA+GGG | - | chr1_4:58097189-58097208 | Msa0172910:intron | 30.0% | |
| ATAGCAAAAAGTTTCTTCTG+AGG | + | chr1_4:58097296-58097315 | None:intergenic | 30.0% | |
| ! | TCAGAAGAAACTTTTTGCTA+TGG | - | chr1_4:58097295-58097314 | Msa0172910:intron | 30.0% |
| ATTCAAAGAGAGAGTTTCTT+GGG | - | chr1_4:58097438-58097457 | Msa0172910:intron | 30.0% | |
| TACCATGTCAAAAGGAAAAA+TGG | + | chr1_4:58097794-58097813 | None:intergenic | 30.0% | |
| AATTCTTGCATAATGCCTAT+TGG | + | chr1_4:58097982-58098001 | None:intergenic | 30.0% | |
| TCTTTATCTTATTCTTGGAG+TGG | - | chr1_4:58098028-58098047 | Msa0172910:intron | 30.0% | |
| CATGATAATTATGCAGCAAA+AGG | - | chr1_4:58098074-58098093 | Msa0172910:intron | 30.0% | |
| CTGGAAACTTGATGAAATCA+AGG | - | chr1_4:58095315-58095334 | Msa0172910:three_prime_UTR | 35.0% | |
| !!! | ACTCGTAGAATGGTGTTTTT+TGG | - | chr1_4:58095342-58095361 | Msa0172910:three_prime_UTR | 35.0% |
| !!! | CTCGTAGAATGGTGTTTTTT+GGG | - | chr1_4:58095343-58095362 | Msa0172910:three_prime_UTR | 35.0% |
| !!! | GAATGGTGTTTTTTGGGATA+TGG | - | chr1_4:58095349-58095368 | Msa0172910:three_prime_UTR | 35.0% |
| ! | GAACGCGTATTCCATTTTAT+TGG | + | chr1_4:58095394-58095413 | None:intergenic | 35.0% |
| TTACAGAGAGAGAAAGAGAA+AGG | + | chr1_4:58095471-58095490 | None:intergenic | 35.0% | |
| ATCTATATCCATGTAGCCAT+TGG | + | chr1_4:58095655-58095674 | None:intergenic | 35.0% | |
| ! | TAGGTTCTATATCGGTTATC+TGG | + | chr1_4:58095740-58095759 | None:intergenic | 35.0% |
| ! | GATTGGGTTAGGTTCTATAT+CGG | + | chr1_4:58095748-58095767 | None:intergenic | 35.0% |
| ATGAGATGAGTCTTTGGATT+GGG | + | chr1_4:58095764-58095783 | None:intergenic | 35.0% | |
| ! | TTTAGGAAGAGATGGGTTTA+TGG | - | chr1_4:58095819-58095838 | Msa0172910:intron | 35.0% |
| TGGGTCAAGGTCAATTAATT+AGG | + | chr1_4:58095845-58095864 | None:intergenic | 35.0% | |
| CTTGACCCAATAAAAGTCTA+GGG | - | chr1_4:58095856-58095875 | Msa0172910:intron | 35.0% | |
| ! | CACATCCCTAGACTTTTATT+GGG | + | chr1_4:58095864-58095883 | None:intergenic | 35.0% |
| ! | ACACATCCCTAGACTTTTAT+TGG | + | chr1_4:58095865-58095884 | None:intergenic | 35.0% |
| !!! | TGTGTTTTGATCCGATACAA+CGG | - | chr1_4:58095880-58095899 | Msa0172910:intron | 35.0% |
| ! | AGAATTTGAGACCGTTGTAT+CGG | + | chr1_4:58095894-58095913 | None:intergenic | 35.0% |
| CTAACAATTACGGATGCATA+AGG | + | chr1_4:58095918-58095937 | None:intergenic | 35.0% | |
| CTACTAGTCATATTAAGACC+GGG | + | chr1_4:58096155-58096174 | None:intergenic | 35.0% | |
| AATATGACTAGTAGAGAACC+AGG | - | chr1_4:58096161-58096180 | Msa0172910:CDS | 35.0% | |
| !!! | GTGACCTGGTCTAAATTTTT+TGG | - | chr1_4:58096215-58096234 | Msa0172910:CDS | 35.0% |
| !!! | TAAATTTTTTGGCCGGGTTT+GGG | - | chr1_4:58096226-58096245 | Msa0172910:CDS | 35.0% |
| !! | ACAAAAGGTATCATAAGGGA+TGG | + | chr1_4:58096263-58096282 | None:intergenic | 35.0% |
| ACATGCCCTAAAGATTATCA+TGG | + | chr1_4:58096399-58096418 | None:intergenic | 35.0% | |
| CTAAAGATTTGACCCTTTGT+CGG | - | chr1_4:58096543-58096562 | Msa0172910:intron | 35.0% | |
| TAAAGATTTGACCCTTTGTC+GGG | - | chr1_4:58096544-58096563 | Msa0172910:intron | 35.0% | |
| TTTGCACTTATGGGAACTAT+TGG | - | chr1_4:58096664-58096683 | Msa0172910:intron | 35.0% | |
| AAAGATGCACAAATTAGTGG+AGG | + | chr1_4:58096731-58096750 | None:intergenic | 35.0% | |
| CTTTATATATGTGACGGTGA+AGG | - | chr1_4:58096876-58096895 | Msa0172910:CDS | 35.0% | |
| AATTACTGGAAACCACAGAT+AGG | + | chr1_4:58096910-58096929 | None:intergenic | 35.0% | |
| ACAAAGTCATTTACTCCACA+GGG | + | chr1_4:58097181-58097200 | None:intergenic | 35.0% | |
| TACAAAGTCATTTACTCCAC+AGG | + | chr1_4:58097182-58097201 | None:intergenic | 35.0% | |
| GGAGTAAATGACTTTGTATG+TGG | - | chr1_4:58097184-58097203 | Msa0172910:intron | 35.0% | |
| AAGACAAAGATCTGTACCAT+TGG | + | chr1_4:58097230-58097249 | None:intergenic | 35.0% | |
| !! | AAGTTTCTTCTGAGGCAATA+TGG | + | chr1_4:58097288-58097307 | None:intergenic | 35.0% |
| TATGGTGATAAAGCAAGTCT+AGG | - | chr1_4:58097313-58097332 | Msa0172910:intron | 35.0% | |
| ! | TTTTTGACGATTTCCAGCAA+TGG | - | chr1_4:58097401-58097420 | Msa0172910:intron | 35.0% |
| CAAGAAACTCTCTCTTTGAA+TGG | + | chr1_4:58097439-58097458 | None:intergenic | 35.0% | |
| CATTCAAAGAGAGAGTTTCT+TGG | - | chr1_4:58097437-58097456 | Msa0172910:intron | 35.0% | |
| ! | CAGCAGGATTAGTGTTTATA+AGG | - | chr1_4:58097482-58097501 | Msa0172910:intron | 35.0% |
| CCAGCCATTTAATAATTGGA+AGG | + | chr1_4:58097527-58097546 | None:intergenic | 35.0% | |
| CCTTCCAATTATTAAATGGC+TGG | - | chr1_4:58097524-58097543 | Msa0172910:intron | 35.0% | |
| ACAGCCAGCCATTTAATAAT+TGG | + | chr1_4:58097531-58097550 | None:intergenic | 35.0% | |
| ! | ATTGCCAAATAGTGGTGTTA+TGG | + | chr1_4:58097662-58097681 | None:intergenic | 35.0% |
| TGCCGCTATTTAACAACATT+TGG | - | chr1_4:58097753-58097772 | Msa0172910:intron | 35.0% | |
| GCCGCTATTTAACAACATTT+GGG | - | chr1_4:58097754-58097773 | Msa0172910:intron | 35.0% | |
| GCCCAAATGTTGTTAAATAG+CGG | + | chr1_4:58097758-58097777 | None:intergenic | 35.0% | |
| !! | GTCCATTTTTCCTTTTGACA+TGG | - | chr1_4:58097789-58097808 | Msa0172910:intron | 35.0% |
| TTACATGAACATGTCTCTGT+TGG | - | chr1_4:58097900-58097919 | Msa0172910:intron | 35.0% | |
| !! | CTAATTTCTGGAGCATTTGA+AGG | + | chr1_4:58098181-58098200 | None:intergenic | 35.0% |
| CTTCAAATGCTCCAGAAATT+AGG | - | chr1_4:58098179-58098198 | Msa0172910:CDS | 35.0% | |
| !! | ATTTTGTAGCCTTGCTTTCT+CGG | - | chr1_4:58098333-58098352 | Msa0172910:five_prime_UTR | 35.0% |
| AAGAGTGAGGAAGGTAGATA+TGG | + | chr1_4:58095437-58095456 | None:intergenic | 40.0% | |
| ATCTACCTTCCTCACTCTTA+CGG | - | chr1_4:58095438-58095457 | Msa0172910:CDS | 40.0% | |
| ! | TGTGATAGTGTTCATGATCC+CGG | - | chr1_4:58095512-58095531 | Msa0172910:intron | 40.0% |
| TAATCGAACCAATGGCTACA+TGG | - | chr1_4:58095644-58095663 | Msa0172910:intron | 40.0% | |
| ! | ATGAGTCTTTGGATTGGGTT+AGG | + | chr1_4:58095759-58095778 | None:intergenic | 40.0% |
| GATGAGATGAGTCTTTGGAT+TGG | + | chr1_4:58095765-58095784 | None:intergenic | 40.0% | |
| ACATGGATGAGATGAGTCTT+TGG | + | chr1_4:58095770-58095789 | None:intergenic | 40.0% | |
| TCTACAGGTCAAATGAGACA+TGG | + | chr1_4:58095787-58095806 | None:intergenic | 40.0% | |
| AAACAGACTCAAAGCTCTAC+AGG | + | chr1_4:58095802-58095821 | None:intergenic | 40.0% | |
| !! | GTAGAGCTTTGAGTCTGTTT+AGG | - | chr1_4:58095802-58095821 | Msa0172910:intron | 40.0% |
| TGAGTCTGTTTAGGAAGAGA+TGG | - | chr1_4:58095811-58095830 | Msa0172910:intron | 40.0% | |
| GAGTCTGTTTAGGAAGAGAT+GGG | - | chr1_4:58095812-58095831 | Msa0172910:intron | 40.0% | |
| ! | CCTAGACTTTTATTGGGTCA+AGG | + | chr1_4:58095858-58095877 | None:intergenic | 40.0% |
| CCTTGACCCAATAAAAGTCT+AGG | - | chr1_4:58095855-58095874 | Msa0172910:intron | 40.0% | |
| ! | GTTTTATGATGTCTGTGACG+AGG | - | chr1_4:58095937-58095956 | Msa0172910:intron | 40.0% |
| !! | TATGCTTTAAAGAGGTGACC+TGG | - | chr1_4:58096201-58096220 | Msa0172910:CDS | 40.0% |
| !!! | CCTGGTCTAAATTTTTTGGC+CGG | - | chr1_4:58096219-58096238 | Msa0172910:CDS | 40.0% |
| !!! | CTGGTCTAAATTTTTTGGCC+GGG | - | chr1_4:58096220-58096239 | Msa0172910:CDS | 40.0% |
| !!! | CTAAATTTTTTGGCCGGGTT+TGG | - | chr1_4:58096225-58096244 | Msa0172910:CDS | 40.0% |
| ! | ACATTGCCGGTTAACTGTAT+TGG | + | chr1_4:58096296-58096315 | None:intergenic | 40.0% |
| AATTGCAGCATACACATTGC+CGG | + | chr1_4:58096309-58096328 | None:intergenic | 40.0% | |
| !! | TGCAATTCAGCTTAGCTTGT+TGG | - | chr1_4:58096322-58096341 | Msa0172910:CDS | 40.0% |
| !! | GCAATTCAGCTTAGCTTGTT+GGG | - | chr1_4:58096323-58096342 | Msa0172910:CDS | 40.0% |
| TGAGAAACACACACTCCATT+GGG | + | chr1_4:58096470-58096489 | None:intergenic | 40.0% | |
| TTGAGAAACACACACTCCAT+TGG | + | chr1_4:58096471-58096490 | None:intergenic | 40.0% | |
| AATGGAGTGTGTGTTTCTCA+AGG | - | chr1_4:58096470-58096489 | Msa0172910:intron | 40.0% | |
| TTTCCTCCCTTCAAATCAGA+GGG | - | chr1_4:58096500-58096519 | Msa0172910:intron | 40.0% | |
| !!! | CAAATCTTTAGGACCCCTTT+TGG | + | chr1_4:58096534-58096553 | None:intergenic | 40.0% |
| CGACAAAGGGTCAAATCTTT+AGG | + | chr1_4:58096545-58096564 | None:intergenic | 40.0% | |
| TTTGCGAAAAACCCGACAAA+GGG | + | chr1_4:58096558-58096577 | None:intergenic | 40.0% | |
| ! | TTTTGCGAAAAACCCGACAA+AGG | + | chr1_4:58096559-58096578 | None:intergenic | 40.0% |
| TCTGTAAGGAAGCTTTCTTC+TGG | - | chr1_4:58096620-58096639 | Msa0172910:intron | 40.0% | |
| CTCGAATGCTTACTTCTCTA+TGG | - | chr1_4:58096775-58096794 | Msa0172910:intron | 40.0% | |
| CTCTATGGATGTGAAATCAC+AGG | - | chr1_4:58096790-58096809 | Msa0172910:intron | 40.0% | |
| !!! | GTATTTTGGTGATCGTCTTC+AGG | - | chr1_4:58096812-58096831 | Msa0172910:CDS | 40.0% |
| !! | TAGGTTCAGTTGCTGATTCA+TGG | - | chr1_4:58097332-58097351 | Msa0172910:intron | 40.0% |
| !! | TTCAGTTGCTGATTCATGGA+AGG | - | chr1_4:58097336-58097355 | Msa0172910:intron | 40.0% |
| AGTTTGAGTCGACCAAGAAA+GGG | - | chr1_4:58097365-58097384 | Msa0172910:intron | 40.0% | |
| ATCGCAGTTGCAGAAAATAG+TGG | - | chr1_4:58097608-58097627 | Msa0172910:intron | 40.0% | |
| AGTGCCATAACACCACTATT+TGG | - | chr1_4:58097655-58097674 | Msa0172910:intron | 40.0% | |
| ACTATAGCGCTATAGCATAG+TGG | + | chr1_4:58097734-58097753 | None:intergenic | 40.0% | |
| ! | TCCTTTTGACATGGTACAGA+TGG | - | chr1_4:58097798-58097817 | Msa0172910:intron | 40.0% |
| TCCATCTGTACCATGTCAAA+AGG | + | chr1_4:58097802-58097821 | None:intergenic | 40.0% | |
| ! | GCTTTATAGCTGCTAGTTTC+TGG | + | chr1_4:58098117-58098136 | None:intergenic | 40.0% |
| ACATACAAAGAGCTCTCATC+AGG | + | chr1_4:58098215-58098234 | None:intergenic | 40.0% | |
| GTTACGACTCAACCCAAACT+AGG | + | chr1_4:58095277-58095296 | None:intergenic | 45.0% | |
| TCAAGGTCACACTCGTAGAA+TGG | - | chr1_4:58095332-58095351 | Msa0172910:three_prime_UTR | 45.0% | |
| !! | ATATGGAAGCACTCTCAGCT+CGG | - | chr1_4:58095366-58095385 | Msa0172910:three_prime_UTR | 45.0% |
| TCAGCTCGGAGCCAATAAAA+TGG | - | chr1_4:58095380-58095399 | Msa0172910:exon | 45.0% | |
| GAAGGTAGATATGGAAGAGG+AGG | + | chr1_4:58095428-58095447 | None:intergenic | 45.0% | |
| GAGGAAGGTAGATATGGAAG+AGG | + | chr1_4:58095431-58095450 | None:intergenic | 45.0% | |
| ATGAACCGTAAGAGTGAGGA+AGG | + | chr1_4:58095446-58095465 | None:intergenic | 45.0% | |
| GGTAATGAACCGTAAGAGTG+AGG | + | chr1_4:58095450-58095469 | None:intergenic | 45.0% | |
| CCGGCCAAAAAATTTAGACC+AGG | + | chr1_4:58096222-58096241 | None:intergenic | 45.0% | |
| AGCATGACTCTCAGTCTTTC+CGG | - | chr1_4:58096432-58096451 | Msa0172910:intron | 45.0% | |
| CATTGGGTTTACCTGCATTC+CGG | + | chr1_4:58096454-58096473 | None:intergenic | 45.0% | |
| CTTTCCTCCCTTCAAATCAG+AGG | - | chr1_4:58096499-58096518 | Msa0172910:intron | 45.0% | |
| ! | TTACCCTCTGATTTGAAGGG+AGG | + | chr1_4:58096506-58096525 | None:intergenic | 45.0% |
| ! | GGGTTACCCTCTGATTTGAA+GGG | + | chr1_4:58096509-58096528 | None:intergenic | 45.0% |
| ! | AGGGTTACCCTCTGATTTGA+AGG | + | chr1_4:58096510-58096529 | None:intergenic | 45.0% |
| GTAAGGAAGCTTTCTTCTGG+CGG | - | chr1_4:58096623-58096642 | Msa0172910:intron | 45.0% | |
| TAAGGAAGCTTTCTTCTGGC+GGG | - | chr1_4:58096624-58096643 | Msa0172910:intron | 45.0% | |
| CCCATAAGTGCAAACACTCT+GGG | + | chr1_4:58096658-58096677 | None:intergenic | 45.0% | |
| ! | CCCAGAGTGTTTGCACTTAT+GGG | - | chr1_4:58096655-58096674 | Msa0172910:intron | 45.0% |
| TCCCATAAGTGCAAACACTC+TGG | + | chr1_4:58096659-58096678 | None:intergenic | 45.0% | |
| ACCAACACGTGGATCACATA+TGG | + | chr1_4:58096696-58096715 | None:intergenic | 45.0% | |
| TGCACAAATTAGTGGAGGTC+CGG | + | chr1_4:58096726-58096745 | None:intergenic | 45.0% | |
| AAGGAGCAAAAGCCTATCTG+TGG | - | chr1_4:58096895-58096914 | Msa0172910:CDS | 45.0% | |
| ACAGATCTTTGTCTTGCTGC+AGG | - | chr1_4:58097235-58097254 | Msa0172910:intron | 45.0% | |
| CAGTTTGAGTCGACCAAGAA+AGG | - | chr1_4:58097364-58097383 | Msa0172910:intron | 45.0% | |
| GTTTGAGTCGACCAAGAAAG+GGG | - | chr1_4:58097366-58097385 | Msa0172910:intron | 45.0% | |
| GAGAGAGTTTCTTGGGCTAT+AGG | - | chr1_4:58097445-58097464 | Msa0172910:intron | 45.0% | |
| AGAGTTTCTTGGGCTATAGG+AGG | - | chr1_4:58097448-58097467 | Msa0172910:intron | 45.0% | |
| GAGTTTCTTGGGCTATAGGA+GGG | - | chr1_4:58097449-58097468 | Msa0172910:intron | 45.0% | |
| GTTATGGCACTATCGCATAG+TGG | + | chr1_4:58097646-58097665 | None:intergenic | 45.0% | |
| AGGAAAGAACCGAGAAAGCA+AGG | + | chr1_4:58098345-58098364 | None:intergenic | 45.0% | |
| !!! | TTTTTTTATATAATATATCA+TGG | - | chr1_4:58096837-58096856 | Msa0172910:CDS | 5.0% |
| GGAAGAGGAGGAGCAAAAGA+AGG | + | chr1_4:58095416-58095435 | None:intergenic | 50.0% | |
| !! | TTTTTGGCCGGGTTTGGGAA+AGG | - | chr1_4:58096231-58096250 | Msa0172910:CDS | 50.0% |
| TCTCAGTCTTTCCGGAATGC+AGG | - | chr1_4:58096440-58096459 | Msa0172910:intron | 50.0% | |
| CGGAATGCAGGTAAACCCAA+TGG | - | chr1_4:58096452-58096471 | Msa0172910:intron | 50.0% | |
| GGAGTGTGTGTTTCTCAAGG+TGG | - | chr1_4:58096473-58096492 | Msa0172910:intron | 50.0% | |
| AGAGGGTAACCCTGCCAAAA+GGG | - | chr1_4:58096517-58096536 | Msa0172910:intron | 50.0% | |
| !!! | CTTTAGGACCCCTTTTGGCA+GGG | + | chr1_4:58096529-58096548 | None:intergenic | 50.0% |
| !!! | TCTTTAGGACCCCTTTTGGC+AGG | + | chr1_4:58096530-58096549 | None:intergenic | 50.0% |
| ATCCTGCACTGCTGTCTGTA+AGG | - | chr1_4:58096606-58096625 | Msa0172910:intron | 50.0% | |
| TTCCTTACAGACAGCAGTGC+AGG | + | chr1_4:58096611-58096630 | None:intergenic | 50.0% | |
| AAGGAAGCTTTCTTCTGGCG+GGG | - | chr1_4:58096625-58096644 | Msa0172910:intron | 50.0% | |
| ! | GCCCAGAGTGTTTGCACTTA+TGG | - | chr1_4:58096654-58096673 | Msa0172910:intron | 50.0% |
| GCCATATGTGATCCACGTGT+TGG | - | chr1_4:58096692-58096711 | Msa0172910:intron | 50.0% | |
| GCACAAATTAGTGGAGGTCC+GGG | + | chr1_4:58096725-58096744 | None:intergenic | 50.0% | |
| TATGTGGTAGGGCTGCTGAA+TGG | - | chr1_4:58097200-58097219 | Msa0172910:intron | 50.0% | |
| ATGTGGTAGGGCTGCTGAAT+GGG | - | chr1_4:58097201-58097220 | Msa0172910:intron | 50.0% | |
| GACCAAGAAAGGGGAGAACT+CGG | - | chr1_4:58097375-58097394 | Msa0172910:intron | 50.0% | |
| ACGATTTCCAGCAATGGACG+AGG | - | chr1_4:58097407-58097426 | Msa0172910:intron | 50.0% | |
| CGATTTCCAGCAATGGACGA+GGG | - | chr1_4:58097408-58097427 | Msa0172910:intron | 50.0% | |
| TTCTTGGGCTATAGGAGGGA+TGG | - | chr1_4:58097453-58097472 | Msa0172910:intron | 50.0% | |
| !! | TAGCTGCTAGTTTCTGGCGT+TGG | + | chr1_4:58098111-58098130 | None:intergenic | 50.0% |
| GATCGCACCTTTCCCAAACC+CGG | + | chr1_4:58096241-58096260 | None:intergenic | 55.0% | |
| CAGAGGGTAACCCTGCCAAA+AGG | - | chr1_4:58096516-58096535 | Msa0172910:intron | 55.0% | |
| GAGGGTAACCCTGCCAAAAG+GGG | - | chr1_4:58096518-58096537 | Msa0172910:intron | 55.0% | |
| GCTGCTGAATGGGTCTCCAA+TGG | - | chr1_4:58097211-58097230 | Msa0172910:intron | 55.0% | |
| CACCGAGTTCTCCCCTTTCT+TGG | + | chr1_4:58097380-58097399 | None:intergenic | 55.0% | |
| GCATATCCCTCGTCCATTGC+TGG | + | chr1_4:58097417-58097436 | None:intergenic | 55.0% | |
| !! | GGAGGGATGGTTCTAACAGC+AGG | - | chr1_4:58097466-58097485 | Msa0172910:intron | 55.0% |
| CAGCTATAAAGCGCACCGCA+AGG | - | chr1_4:58098125-58098144 | Msa0172910:intron | 55.0% | |
| AAGGAAGCTGGGAAGCAGGA+TGG | - | chr1_4:58098144-58098163 | Msa0172910:intron | 55.0% | |
| ! | CCACGTGTTGGTACTCAGCC+CGG | - | chr1_4:58096704-58096723 | Msa0172910:intron | 60.0% |
| CACCAGGTTCTTGCACCCTG+TGG | - | chr1_4:58097163-58097182 | Msa0172910:intron | 60.0% | |
| CTCCACAGGGTGCAAGAACC+TGG | + | chr1_4:58097168-58097187 | None:intergenic | 60.0% | |
| AAAGCGCACCGCAAGGAAGC+TGG | - | chr1_4:58098132-58098151 | Msa0172910:intron | 60.0% | |
| AAGCGCACCGCAAGGAAGCT+GGG | - | chr1_4:58098133-58098152 | Msa0172910:intron | 60.0% | |
| CCTGCTTCCCAGCTTCCTTG+CGG | + | chr1_4:58098143-58098162 | None:intergenic | 60.0% | |
| GAAGCTGGGAAGCAGGATGG+CGG | - | chr1_4:58098147-58098166 | Msa0172910:CDS | 60.0% | |
| CCGGGCTGAGTACCAACACG+TGG | + | chr1_4:58096707-58096726 | None:intergenic | 65.0% | |
| CCGCAAGGAAGCTGGGAAGC+AGG | - | chr1_4:58098140-58098159 | Msa0172910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58095149 | 58098456 | 58095149 | ID=Msa0172910;Name=Msa0172910 |
| chr1_4 | mRNA | 58095149 | 58098456 | 58095149 | ID=Msa0172910-mRNA-1;Parent=Msa0172910;Name=Msa0172910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=202|0.4|0.33|1|0.4|0.16|6|240|290 |
| chr1_4 | exon | 58095149 | 58095515 | 58095149 | ID=Msa0172910-mRNA-1:exon:17917;Parent=Msa0172910-mRNA-1 |
| chr1_4 | exon | 58096111 | 58096348 | 58096111 | ID=Msa0172910-mRNA-1:exon:17916;Parent=Msa0172910-mRNA-1 |
| chr1_4 | exon | 58096373 | 58096436 | 58096373 | ID=Msa0172910-mRNA-1:exon:17915;Parent=Msa0172910-mRNA-1 |
| chr1_4 | exon | 58096794 | 58097024 | 58096794 | ID=Msa0172910-mRNA-1:exon:17914;Parent=Msa0172910-mRNA-1 |
| chr1_4 | exon | 58097040 | 58097143 | 58097040 | ID=Msa0172910-mRNA-1:exon:17913;Parent=Msa0172910-mRNA-1 |
| chr1_4 | exon | 58098146 | 58098456 | 58098146 | ID=Msa0172910-mRNA-1:exon:17912;Parent=Msa0172910-mRNA-1 |
| chr1_4 | five_prime_UTR | 58098255 | 58098456 | 58098255 | ID=Msa0172910-mRNA-1:five_prime_utr;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58098146 | 58098254 | 58098146 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58097040 | 58097143 | 58097040 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58096794 | 58097024 | 58096794 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58096373 | 58096436 | 58096373 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58096111 | 58096348 | 58096111 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | CDS | 58095389 | 58095515 | 58095389 | ID=Msa0172910-mRNA-1:cds;Parent=Msa0172910-mRNA-1 |
| chr1_4 | three_prime_UTR | 58095149 | 58095388 | 58095149 | ID=Msa0172910-mRNA-1:three_prime_utr;Parent=Msa0172910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
