Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230500 | XP_003591162.2 | 91.503 | 306 | 10 | 3 | 1 | 290 | 1 | 306 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230500 | G7I8R3 | 91.503 | 306 | 10 | 3 | 1 | 290 | 1 | 306 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172910 | Msa0230500 | 0.946093 | 8.897875e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230500 | MtrunA17_Chr1g0192261 | 91.503 | 306 | 10 | 3 | 1 | 290 | 1 | 306 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230500 | AT5G27830.1 | 47.212 | 269 | 115 | 9 | 25 | 270 | 16 | 280 | 3.34e-66 | 209 |
| Msa0230500 | AT5G27830.5 | 47.426 | 272 | 113 | 9 | 25 | 270 | 16 | 283 | 1.12e-65 | 208 |
| Msa0230500 | AT5G27830.3 | 48.425 | 254 | 106 | 8 | 38 | 270 | 33 | 282 | 4.95e-64 | 204 |
| Msa0230500 | AT5G27830.6 | 48.594 | 249 | 105 | 7 | 41 | 270 | 12 | 256 | 5.00e-64 | 202 |
| Msa0230500 | AT5G27830.4 | 48.638 | 257 | 104 | 8 | 38 | 270 | 50 | 302 | 2.35e-63 | 202 |
| Msa0230500 | AT5G27830.2 | 42.912 | 261 | 109 | 8 | 25 | 270 | 16 | 251 | 3.00e-53 | 175 |
Find 102 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTATAGCTGCTAGTTTC+TGG | 0.166545 | 2_2:+2687628 | None:intergenic |
| CACCGAGTTCTCCCCTTTCT+TGG | 0.217053 | 2_2:+2688357 | None:intergenic |
| GCCCAGAGTGTTTGCACTTA+TGG | 0.217277 | 2_2:-2689080 | Msa0230500:CDS |
| ATAGAAATTTGCACCTAGTT+TGG | 0.257794 | 2_2:-2690467 | Msa0230500:five_prime_UTR |
| CTTCAAATGCTCCAGAAATT+AGG | 0.261583 | 2_2:-2687563 | Msa0230500:CDS |
| AAACTAGGTGCAAATTTCTA+TGG | 0.264467 | 2_2:+2690469 | None:intergenic |
| CCCAGAGTGTTTGCACTTAT+GGG | 0.273771 | 2_2:-2689079 | Msa0230500:CDS |
| TGCTCAGTTTAACAGGAATA+AGG | 0.288901 | 2_2:+2687300 | None:intergenic |
| GTTTCATTGCTCAGTTTAAC+AGG | 0.303515 | 2_2:+2687293 | None:intergenic |
| TTTGCACTTATGGGAACTAT+TGG | 0.308596 | 2_2:-2689070 | Msa0230500:CDS |
| GAGAGAGTTTCTTGGGCTAT+AGG | 0.310193 | 2_2:-2688289 | Msa0230500:CDS |
| AATTAGATGTGGTAATTTAT+AGG | 0.312425 | 2_2:-2687488 | Msa0230500:three_prime_UTR |
| CTCGAATGCTTACTTCTCTA+TGG | 0.317847 | 2_2:-2688959 | Msa0230500:CDS |
| AAGTTTCTTCTGAGGCAATA+TGG | 0.327699 | 2_2:+2688449 | None:intergenic |
| CGACAAAGGGTCAAATCTTT+AGG | 0.332368 | 2_2:+2689192 | None:intergenic |
| TCAGCTCGGAGCCAATAAAA+TGG | 0.336611 | 2_2:-2690348 | Msa0230500:CDS |
| AATAATCTAAATGAAGTATA+TGG | 0.350080 | 2_2:-2687436 | Msa0230500:three_prime_UTR |
| CAAATCTTTAGGACCCCTTT+TGG | 0.350636 | 2_2:+2689203 | None:intergenic |
| TAGAAATTTGCACCTAGTTT+GGG | 0.352016 | 2_2:-2690466 | Msa0230500:five_prime_UTR |
| TAGGTTCAGTTGCTGATTCA+TGG | 0.360109 | 2_2:-2688402 | Msa0230500:CDS |
| CATTCAAAGAGAGAGTTTCT+TGG | 0.364061 | 2_2:-2688297 | Msa0230500:CDS |
| GCATATCCCTCGTCCATTGC+TGG | 0.365104 | 2_2:+2688320 | None:intergenic |
| CTAATTTCTGGAGCATTTGA+AGG | 0.381530 | 2_2:+2687564 | None:intergenic |
| AAGAGTGAGGAAGGTAGATA+TGG | 0.382104 | 2_2:+2690294 | None:intergenic |
| TCTGTAAGGAAGCTTTCTTC+TGG | 0.399762 | 2_2:-2689114 | Msa0230500:CDS |
| AAAGCGCACCGCAAGGAAGC+TGG | 0.402682 | 2_2:-2687610 | Msa0230500:CDS |
| CATAACATAACATATGGTTC+TGG | 0.408210 | 2_2:-2690432 | Msa0230500:five_prime_UTR |
| CAGTTTGAGTCGACCAAGAA+AGG | 0.416167 | 2_2:-2688370 | Msa0230500:CDS |
| TGCACAAATTAGTGGAGGTC+CGG | 0.422044 | 2_2:+2689011 | None:intergenic |
| CATAAAGATGCACAAATTAG+TGG | 0.429471 | 2_2:+2689003 | None:intergenic |
| ATGTGGTAGGGCTGCTGAAT+GGG | 0.429705 | 2_2:-2688533 | Msa0230500:CDS |
| ATCTACCTTCCTCACTCTTA+CGG | 0.430774 | 2_2:-2690290 | Msa0230500:intron |
| TATGTGGTAGGGCTGCTGAA+TGG | 0.432258 | 2_2:-2688534 | Msa0230500:CDS |
| ATTCAAAGAGAGAGTTTCTT+GGG | 0.437639 | 2_2:-2688296 | Msa0230500:CDS |
| AGGGTTACCCTCTGATTTGA+AGG | 0.438690 | 2_2:+2689227 | None:intergenic |
| CTAAAGATTTGACCCTTTGT+CGG | 0.441679 | 2_2:-2689191 | Msa0230500:CDS |
| CCGCAAGGAAGCTGGGAAGC+AGG | 0.444022 | 2_2:-2687602 | Msa0230500:CDS |
| TTTATGTGAGAGAATTTATG+AGG | 0.444154 | 2_2:-2688986 | Msa0230500:CDS |
| TGAGAAACACACACTCCATT+GGG | 0.450670 | 2_2:+2689267 | None:intergenic |
| TAAAGATTTGACCCTTTGTC+GGG | 0.451109 | 2_2:-2689190 | Msa0230500:intron |
| TTCTTGGGCTATAGGAGGGA+TGG | 0.460978 | 2_2:-2688281 | Msa0230500:CDS |
| TTCCTTACAGACAGCAGTGC+AGG | 0.465534 | 2_2:+2689126 | None:intergenic |
| TCCCATAAGTGCAAACACTC+TGG | 0.467096 | 2_2:+2689078 | None:intergenic |
| AGAGGGTAACCCTGCCAAAA+GGG | 0.472309 | 2_2:-2689217 | Msa0230500:CDS |
| ATCCTGCACTGCTGTCTGTA+AGG | 0.472662 | 2_2:-2689128 | Msa0230500:CDS |
| CAGAGGGTAACCCTGCCAAA+AGG | 0.475029 | 2_2:-2689218 | Msa0230500:CDS |
| TTGAGAAACACACACTCCAT+TGG | 0.476677 | 2_2:+2689266 | None:intergenic |
| CAAGAAACTCTCTCTTTGAA+TGG | 0.480127 | 2_2:+2688298 | None:intergenic |
| TCGTAACATAACATAACATA+TGG | 0.480880 | 2_2:-2690438 | Msa0230500:five_prime_UTR |
| TAAGGAAGCTTTCTTCTGGC+GGG | 0.481937 | 2_2:-2689110 | Msa0230500:CDS |
| CTGGAAACTTGATGAAATCA+AGG | 0.485445 | 2_2:-2690413 | Msa0230500:five_prime_UTR |
| ACATACAAAGAGCTCTCATC+AGG | 0.489068 | 2_2:+2687530 | None:intergenic |
| ACCAACACGTGGATCACATA+TGG | 0.489325 | 2_2:+2689041 | None:intergenic |
| TAGCTGCTAGTTTCTGGCGT+TGG | 0.499515 | 2_2:+2687634 | None:intergenic |
| GAGGAAGGTAGATATGGAAG+AGG | 0.504318 | 2_2:+2690300 | None:intergenic |
| CCCATAAGTGCAAACACTCT+GGG | 0.507480 | 2_2:+2689079 | None:intergenic |
| TACAAAGTCATTTACTCCAC+AGG | 0.507812 | 2_2:+2688555 | None:intergenic |
| AGTTTGAGTCGACCAAGAAA+GGG | 0.513976 | 2_2:-2688369 | Msa0230500:CDS |
| AGAGTTTCTTGGGCTATAGG+AGG | 0.517076 | 2_2:-2688286 | Msa0230500:CDS |
| GAAGGTAGATATGGAAGAGG+AGG | 0.522834 | 2_2:+2690303 | None:intergenic |
| GCACAAATTAGTGGAGGTCC+GGG | 0.524054 | 2_2:+2689012 | None:intergenic |
| GGAGGGATGGTTCTAACAGC+AGG | 0.532958 | 2_2:-2688268 | Msa0230500:CDS |
| AAGCGCACCGCAAGGAAGCT+GGG | 0.537264 | 2_2:-2687609 | Msa0230500:CDS |
| ACGATTTCCAGCAATGGACG+AGG | 0.538420 | 2_2:-2688327 | Msa0230500:CDS |
| TCAAGGTCACACTCGTAGAA+TGG | 0.542732 | 2_2:-2690396 | Msa0230500:exon |
| TTCAGTTGCTGATTCATGGA+AGG | 0.543140 | 2_2:-2688398 | Msa0230500:CDS |
| GTTACGACTCAACCCAAACT+AGG | 0.546045 | 2_2:+2690454 | None:intergenic |
| TAAATGACTTTGTATGTGGT+AGG | 0.546831 | 2_2:-2688546 | Msa0230500:CDS |
| CCACGTGTTGGTACTCAGCC+CGG | 0.549087 | 2_2:-2689030 | Msa0230500:CDS |
| CAGCTATAAAGCGCACCGCA+AGG | 0.550066 | 2_2:-2687617 | Msa0230500:CDS |
| CTCTATGGATGTGAAATCAC+AGG | 0.553606 | 2_2:-2688944 | Msa0230500:intron |
| AGGAAAGAACCGAGAAAGCA+AGG | 0.556550 | 2_2:+2687400 | None:intergenic |
| GTAAGGAAGCTTTCTTCTGG+CGG | 0.556963 | 2_2:-2689111 | Msa0230500:CDS |
| GACCAAGAAAGGGGAGAACT+CGG | 0.570667 | 2_2:-2688359 | Msa0230500:CDS |
| AAGGAAGCTGGGAAGCAGGA+TGG | 0.573269 | 2_2:-2687598 | Msa0230500:CDS |
| CTTTCCTCCCTTCAAATCAG+AGG | 0.575797 | 2_2:-2689235 | Msa0230500:CDS |
| TATGGTGATAAAGCAAGTCT+AGG | 0.585323 | 2_2:-2688421 | Msa0230500:CDS |
| ATGAACCGTAAGAGTGAGGA+AGG | 0.586341 | 2_2:+2690285 | None:intergenic |
| CCTGCTTCCCAGCTTCCTTG+CGG | 0.589880 | 2_2:+2687602 | None:intergenic |
| TTTCCTCCCTTCAAATCAGA+GGG | 0.593855 | 2_2:-2689234 | Msa0230500:CDS |
| GAGTTTCTTGGGCTATAGGA+GGG | 0.594455 | 2_2:-2688285 | Msa0230500:CDS |
| CGGAATGCAGGTAAACCCAA+TGG | 0.599107 | 2_2:-2689282 | Msa0230500:intron |
| GGGTTACCCTCTGATTTGAA+GGG | 0.599972 | 2_2:+2689228 | None:intergenic |
| GCTGCTGAATGGGTCTCCAA+TGG | 0.609525 | 2_2:-2688523 | Msa0230500:intron |
| TTACCCTCTGATTTGAAGGG+AGG | 0.609671 | 2_2:+2689231 | None:intergenic |
| ATATGGAAGCACTCTCAGCT+CGG | 0.619453 | 2_2:-2690362 | Msa0230500:CDS |
| GAGGGTAACCCTGCCAAAAG+GGG | 0.625915 | 2_2:-2689216 | Msa0230500:CDS |
| CACCAGGTTCTTGCACCCTG+TGG | 0.628381 | 2_2:-2688571 | Msa0230500:intron |
| AAGGAAGCTTTCTTCTGGCG+GGG | 0.630004 | 2_2:-2689109 | Msa0230500:CDS |
| AAATGACTTTGTATGTGGTA+GGG | 0.634779 | 2_2:-2688545 | Msa0230500:CDS |
| CGATTTCCAGCAATGGACGA+GGG | 0.639402 | 2_2:-2688326 | Msa0230500:CDS |
| GGTAATGAACCGTAAGAGTG+AGG | 0.640349 | 2_2:+2690281 | None:intergenic |
| TAACAATACATAATTAGATG+TGG | 0.646300 | 2_2:-2687499 | Msa0230500:three_prime_UTR |
| AATGGAGTGTGTGTTTCTCA+AGG | 0.655392 | 2_2:-2689264 | Msa0230500:CDS |
| GTTTGAGTCGACCAAGAAAG+GGG | 0.658556 | 2_2:-2688368 | Msa0230500:CDS |
| ACAAAGTCATTTACTCCACA+GGG | 0.664354 | 2_2:+2688556 | None:intergenic |
| GGAGTAAATGACTTTGTATG+TGG | 0.664398 | 2_2:-2688550 | Msa0230500:CDS |
| GAAGCTGGGAAGCAGGATGG+CGG | 0.665851 | 2_2:-2687595 | Msa0230500:CDS |
| CCGGGCTGAGTACCAACACG+TGG | 0.666869 | 2_2:+2689030 | None:intergenic |
| AAAGATGCACAAATTAGTGG+AGG | 0.670310 | 2_2:+2689006 | None:intergenic |
| GCCATATGTGATCCACGTGT+TGG | 0.670501 | 2_2:-2689042 | Msa0230500:CDS |
| GGAGTGTGTGTTTCTCAAGG+TGG | 0.720427 | 2_2:-2689261 | Msa0230500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGTAAACAAAAAAAAT+GGG | - | chr2_2:2687826-2687845 | Msa0230500:intron | 10.0% |
| !!! | CATTTATGTATTTTTTTATT+AGG | - | chr2_2:2689705-2689724 | Msa0230500:intron | 10.0% |
| !! | TGTAGATATAAATATAAAAT+AGG | + | chr2_2:2690201-2690220 | None:intergenic | 10.0% |
| !! | TAAAAAATTGAAAAATTTCC+GGG | + | chr2_2:2687692-2687711 | None:intergenic | 15.0% |
| !! | GTAAAAAATTGAAAAATTTC+CGG | + | chr2_2:2687693-2687712 | None:intergenic | 15.0% |
| !!! | GATTTTGTAAACAAAAAAAA+TGG | - | chr2_2:2687825-2687844 | Msa0230500:intron | 15.0% |
| !!! | GTTTTAAAACAATCAAAATA+TGG | + | chr2_2:2689297-2689316 | None:intergenic | 15.0% |
| !! | AATAATCTAAATGAAGTATA+TGG | - | chr2_2:2690451-2690470 | Msa0230500:five_prime_UTR | 15.0% |
| !! | TCAAAAAACTAAATGAAAAA+TGG | + | chr2_2:2690515-2690534 | None:intergenic | 15.0% |
| !! | GAATAAACAAAAATCAATAC+CGG | - | chr2_2:2687334-2687353 | Msa0230500:three_prime_UTR | 20.0% |
| !! | AATAAACAAAAATCAATACC+GGG | - | chr2_2:2687335-2687354 | Msa0230500:three_prime_UTR | 20.0% |
| !! | GTAATTGTATTTACATAGTT+AGG | - | chr2_2:2687646-2687665 | Msa0230500:CDS | 20.0% |
| !! | AGTTAACTAGACTAATATAA+CGG | + | chr2_2:2687763-2687782 | None:intergenic | 20.0% |
| !!! | AAACAAAAAAAATGGGTTTT+TGG | - | chr2_2:2687833-2687852 | Msa0230500:intron | 20.0% |
| !!! | TTGAATAATTTTCCTTGTAA+AGG | + | chr2_2:2688145-2688164 | None:intergenic | 20.0% |
| !! | AAAATTACTAACTAAACTAC+CGG | + | chr2_2:2688178-2688197 | None:intergenic | 20.0% |
| !! | TATTAATATGTATCCAAACA+TGG | + | chr2_2:2688231-2688250 | None:intergenic | 20.0% |
| !! | TTGGTATAAGTTAAGATTAA+AGG | + | chr2_2:2688524-2688543 | None:intergenic | 20.0% |
| !! | AATCTTAACTTATACCAAAA+TGG | - | chr2_2:2688526-2688545 | Msa0230500:CDS | 20.0% |
| !! | TTTAATAATTGGAAGGAAAA+AGG | + | chr2_2:2689673-2689692 | None:intergenic | 20.0% |
| !!! | TTTTCCTTCCAATTATTAAA+TGG | - | chr2_2:2689673-2689692 | Msa0230500:intron | 20.0% |
| !!! | TTTTTTATTAGGTCAATCTT+AGG | - | chr2_2:2689716-2689735 | Msa0230500:intron | 20.0% |
| !!! | TCCATAAGTTTTTAATTAGT+GGG | + | chr2_2:2690072-2690091 | None:intergenic | 20.0% |
| !!! | TTCCATAAGTTTTTAATTAG+TGG | + | chr2_2:2690073-2690092 | None:intergenic | 20.0% |
| !! | TGATATCTTTATCTTATTCT+TGG | - | chr2_2:2690168-2690187 | Msa0230500:intron | 20.0% |
| !! | TAACAATACATAATTAGATG+TGG | - | chr2_2:2690388-2690407 | Msa0230500:exon | 20.0% |
| !! | AATTAGATGTGGTAATTTAT+AGG | - | chr2_2:2690399-2690418 | Msa0230500:exon | 20.0% |
| !! | AAACTAAATGAAAAATGGAA+AGG | + | chr2_2:2690510-2690529 | None:intergenic | 20.0% |
| ! | TCGTAACATAACATAACATA+TGG | - | chr2_2:2687449-2687468 | Msa0230500:three_prime_UTR | 25.0% |
| !! | ATTAGTCTAGTTAACTATGA+AGG | - | chr2_2:2687767-2687786 | Msa0230500:intron | 25.0% |
| !!! | GAGGTTTTAACTTTTGTATA+GGG | - | chr2_2:2687855-2687874 | Msa0230500:intron | 25.0% |
| !!! | AGGTTTTAACTTTTGTATAG+GGG | - | chr2_2:2687856-2687875 | Msa0230500:intron | 25.0% |
| ! | CATCATGAAACTAACAATTA+CGG | + | chr2_2:2688081-2688100 | None:intergenic | 25.0% |
| !!! | TTCAAGTTTTTTCCTTTACA+AGG | - | chr2_2:2688130-2688149 | Msa0230500:intron | 25.0% |
| ! | AAATTACTAACTAAACTACC+GGG | + | chr2_2:2688177-2688196 | None:intergenic | 25.0% |
| !! | TTAGTTAGTAATTTTGTAGC+AGG | - | chr2_2:2688183-2688202 | Msa0230500:intron | 25.0% |
| ! | TAACTTATAATAGCCATGTT+TGG | - | chr2_2:2688215-2688234 | Msa0230500:intron | 25.0% |
| !!! | AAAGACAAAAGGTATCATAA+GGG | + | chr2_2:2688420-2688439 | None:intergenic | 25.0% |
| ! | ATTGGTAAATGAAAGACAAA+AGG | + | chr2_2:2688431-2688450 | None:intergenic | 25.0% |
| ! | TTTATGTGAGAGAATTTATG+AGG | - | chr2_2:2688901-2688920 | Msa0230500:intron | 25.0% |
| ! | TAAACTGAATGACTAATTAC+TGG | + | chr2_2:2689077-2689096 | None:intergenic | 25.0% |
| !!! | TTACATTTTTAAGCATTCGT+AGG | - | chr2_2:2689094-2689113 | Msa0230500:CDS | 25.0% |
| !! | TATTTGTGCCTTTATTTGAT+AGG | - | chr2_2:2689122-2689141 | Msa0230500:CDS | 25.0% |
| ! | AATTCTGTCCTATCAAATAA+AGG | + | chr2_2:2689133-2689152 | None:intergenic | 25.0% |
| ! | TTTATTTGATAGGACAGAAT+TGG | - | chr2_2:2689132-2689151 | Msa0230500:CDS | 25.0% |
| ! | CTACTTAACAGAAATACTTA+TGG | + | chr2_2:2689208-2689227 | None:intergenic | 25.0% |
| !!! | ATTTATCTTTTGAGACAAGA+TGG | - | chr2_2:2689247-2689266 | Msa0230500:CDS | 25.0% |
| ! | ACAATCAAAATATGGATGTA+AGG | + | chr2_2:2689289-2689308 | None:intergenic | 25.0% |
| !!! | TTTGATTGTTTTAAAACACC+AGG | - | chr2_2:2689300-2689319 | Msa0230500:intron | 25.0% |
| ! | TACAAAATATTGCCAAATAG+TGG | + | chr2_2:2689823-2689842 | None:intergenic | 25.0% |
| ! | ACCCACTAATTAAAAACTTA+TGG | - | chr2_2:2690068-2690087 | Msa0230500:intron | 25.0% |
| !!! | TTTGATTTGATGTTTCCAAT+AGG | - | chr2_2:2690109-2690128 | Msa0230500:intron | 25.0% |
| !! | GAAATTCTTTTCCTAATTTC+TGG | + | chr2_2:2690338-2690357 | None:intergenic | 25.0% |
| !! | TGATATTTTCCCTTACAAAA+TGG | - | chr2_2:2690536-2690555 | Msa0230500:five_prime_UTR | 25.0% |
| !! | AAAAACACACCATTTTGTAA+GGG | + | chr2_2:2690548-2690567 | None:intergenic | 25.0% |
| !! | AAAAAACACACCATTTTGTA+AGG | + | chr2_2:2690549-2690568 | None:intergenic | 25.0% |
| !! | TTGTTTTTCTTTTGTTGACC+CGG | + | chr2_2:2687356-2687375 | None:intergenic | 30.0% |
| AAACTAGGTGCAAATTTCTA+TGG | + | chr2_2:2687421-2687440 | None:intergenic | 30.0% | |
| ATAGAAATTTGCACCTAGTT+TGG | - | chr2_2:2687420-2687439 | Msa0230500:three_prime_UTR | 30.0% | |
| TAGAAATTTGCACCTAGTTT+GGG | - | chr2_2:2687421-2687440 | Msa0230500:three_prime_UTR | 30.0% | |
| CATAACATAACATATGGTTC+TGG | - | chr2_2:2687455-2687474 | Msa0230500:three_prime_UTR | 30.0% | |
| !!! | ACCTATGCTGTTTTTTGATT+TGG | - | chr2_2:2687714-2687733 | Msa0230500:intron | 30.0% |
| ACCAAATCAAAAAACAGCAT+AGG | + | chr2_2:2687718-2687737 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTTGATTTGGTTT+CGG | - | chr2_2:2687720-2687739 | Msa0230500:intron | 30.0% |
| !!! | TTTTTGATTTGGTTTCGGAT+CGG | - | chr2_2:2687725-2687744 | Msa0230500:intron | 30.0% |
| !! | CAAAAAAAATGGGTTTTTGG+AGG | - | chr2_2:2687836-2687855 | Msa0230500:intron | 30.0% |
| !!! | GGAGGTTTTAACTTTTGTAT+AGG | - | chr2_2:2687854-2687873 | Msa0230500:intron | 30.0% |
| CTTGACCCAATAAAAGTTTA+GGG | - | chr2_2:2688009-2688028 | Msa0230500:intron | 30.0% | |
| ! | CACATCCCTAAACTTTTATT+GGG | + | chr2_2:2688017-2688036 | None:intergenic | 30.0% |
| ! | ACACATCCCTAAACTTTTAT+TGG | + | chr2_2:2688018-2688037 | None:intergenic | 30.0% |
| ATTATTCAAGATGAAATCCC+CGG | - | chr2_2:2688156-2688175 | Msa0230500:intron | 30.0% | |
| AATTACTAACTAAACTACCG+GGG | + | chr2_2:2688176-2688195 | None:intergenic | 30.0% | |
| GGATACATATTAATAATCCG+CGG | - | chr2_2:2688236-2688255 | Msa0230500:intron | 30.0% | |
| AAAGACTATTAAAACTACCG+CGG | + | chr2_2:2688256-2688275 | None:intergenic | 30.0% | |
| !!! | CGGTAGTTTTAATAGTCTTT+CGG | - | chr2_2:2688256-2688275 | Msa0230500:intron | 30.0% |
| TCTACTAGTCATATTAAGAC+GGG | + | chr2_2:2688309-2688328 | None:intergenic | 30.0% | |
| CTCTACTAGTCATATTAAGA+CGG | + | chr2_2:2688310-2688329 | None:intergenic | 30.0% | |
| !! | ACCTAGAATATGCTTTAAAG+AGG | - | chr2_2:2688346-2688365 | Msa0230500:CDS | 30.0% |
| !! | ACCTCTTTAAAGCATATTCT+AGG | + | chr2_2:2688350-2688369 | None:intergenic | 30.0% |
| !! | GAAAGACAAAAGGTATCATA+AGG | + | chr2_2:2688421-2688440 | None:intergenic | 30.0% |
| CATTTACCAATACAGTTAAC+CGG | - | chr2_2:2688440-2688459 | Msa0230500:CDS | 30.0% | |
| AGGAGAAGAATTTGAAAACT+AGG | + | chr2_2:2688504-2688523 | None:intergenic | 30.0% | |
| ! | AAAGATTATCATGGCCATTT+TGG | + | chr2_2:2688543-2688562 | None:intergenic | 30.0% |
| AAATGGCCATGATAATCTTT+AGG | - | chr2_2:2688543-2688562 | Msa0230500:CDS | 30.0% | |
| AATGGCCATGATAATCTTTA+GGG | - | chr2_2:2688544-2688563 | Msa0230500:CDS | 30.0% | |
| CATAAAGATGCACAAATTAG+TGG | + | chr2_2:2688887-2688906 | None:intergenic | 30.0% | |
| ! | ATGTGAAATCACAGGTATTT+TGG | - | chr2_2:2688951-2688970 | Msa0230500:CDS | 30.0% |
| TATCATGGAAAGAAGTTTAG+AGG | - | chr2_2:2689005-2689024 | Msa0230500:CDS | 30.0% | |
| AGAGGTCTTTATATATGTGA+CGG | - | chr2_2:2689023-2689042 | Msa0230500:CDS | 30.0% | |
| TAAATGACTTTGTATGTGGT+AGG | - | chr2_2:2689341-2689360 | Msa0230500:intron | 30.0% | |
| AAATGACTTTGTATGTGGTA+GGG | - | chr2_2:2689342-2689361 | Msa0230500:intron | 30.0% | |
| ATAGCAAAAAGTTTCTTCTG+AGG | + | chr2_2:2689449-2689468 | None:intergenic | 30.0% | |
| ! | TCAGAAGAAACTTTTTGCTA+TGG | - | chr2_2:2689448-2689467 | Msa0230500:intron | 30.0% |
| ATTCAAAGAGAGAGTTTCTT+GGG | - | chr2_2:2689591-2689610 | Msa0230500:intron | 30.0% | |
| TACCATGTCAAAAGGAAAAA+TGG | + | chr2_2:2689946-2689965 | None:intergenic | 30.0% | |
| AATTCTTGCATAATGCCTAT+TGG | + | chr2_2:2690127-2690146 | None:intergenic | 30.0% | |
| TCTTTATCTTATTCTTGGAG+TGG | - | chr2_2:2690173-2690192 | Msa0230500:intron | 30.0% | |
| CATGATAATTATGCAGCAAA+AGG | - | chr2_2:2690219-2690238 | Msa0230500:intron | 30.0% | |
| CTGGAAACTTGATGAAATCA+AGG | - | chr2_2:2687474-2687493 | Msa0230500:three_prime_UTR | 35.0% | |
| !!! | ACTCGTAGAATGGTGTTTTT+TGG | - | chr2_2:2687501-2687520 | Msa0230500:three_prime_UTR | 35.0% |
| !!! | CTCGTAGAATGGTGTTTTTT+GGG | - | chr2_2:2687502-2687521 | Msa0230500:three_prime_UTR | 35.0% |
| !!! | GAATGGTGTTTTTTGGGATA+TGG | - | chr2_2:2687508-2687527 | Msa0230500:three_prime_UTR | 35.0% |
| ! | GAACGCGTATTCCATTTTAT+TGG | + | chr2_2:2687553-2687572 | None:intergenic | 35.0% |
| TTACAGAGAGAGAAAGAGAA+AGG | + | chr2_2:2687630-2687649 | None:intergenic | 35.0% | |
| ATCTATATCCATGTAGCCAT+TGG | + | chr2_2:2687808-2687827 | None:intergenic | 35.0% | |
| ! | TAGGTTCTATATCGGTTATC+TGG | + | chr2_2:2687893-2687912 | None:intergenic | 35.0% |
| ! | GATTGGGTTAGGTTCTATAT+CGG | + | chr2_2:2687901-2687920 | None:intergenic | 35.0% |
| ATGAGATGAGTCTTTGGATT+GGG | + | chr2_2:2687917-2687936 | None:intergenic | 35.0% | |
| ! | TTTAGGAAGAGATGGGTTTA+TGG | - | chr2_2:2687972-2687991 | Msa0230500:intron | 35.0% |
| TGGGTCAAGGTCAATTAATT+AGG | + | chr2_2:2687998-2688017 | None:intergenic | 35.0% | |
| ! | CCTAAACTTTTATTGGGTCA+AGG | + | chr2_2:2688011-2688030 | None:intergenic | 35.0% |
| CCTTGACCCAATAAAAGTTT+AGG | - | chr2_2:2688008-2688027 | Msa0230500:intron | 35.0% | |
| !!! | TGTGTTTTGATCCGATACAA+CGG | - | chr2_2:2688033-2688052 | Msa0230500:intron | 35.0% |
| ! | AGAATTTGAGACCGTTGTAT+CGG | + | chr2_2:2688047-2688066 | None:intergenic | 35.0% |
| CTAACAATTACGGATGCATA+AGG | + | chr2_2:2688071-2688090 | None:intergenic | 35.0% | |
| !! | GGATTAGCTAAGATGAAAAC+AGG | + | chr2_2:2688287-2688306 | None:intergenic | 35.0% |
| CTACTAGTCATATTAAGACG+GGG | + | chr2_2:2688308-2688327 | None:intergenic | 35.0% | |
| AATATGACTAGTAGAGAACC+AGG | - | chr2_2:2688314-2688333 | Msa0230500:CDS | 35.0% | |
| ATTCTAGGTCTGAATAAACC+TGG | + | chr2_2:2688335-2688354 | None:intergenic | 35.0% | |
| !! | GTGACCTGGTCTAAAATTTT+TGG | - | chr2_2:2688368-2688387 | Msa0230500:CDS | 35.0% |
| !!! | TAAAATTTTTGGCCGGGTTT+GGG | - | chr2_2:2688379-2688398 | Msa0230500:CDS | 35.0% |
| !! | ACAAAAGGTATCATAAGGGA+TGG | + | chr2_2:2688416-2688435 | None:intergenic | 35.0% |
| ACATGCCCTAAAGATTATCA+TGG | + | chr2_2:2688552-2688571 | None:intergenic | 35.0% | |
| CTAAAGATTTGACCCTTTGT+CGG | - | chr2_2:2688696-2688715 | Msa0230500:intron | 35.0% | |
| TAAAGATTTGACCCTTTGTC+GGG | - | chr2_2:2688697-2688716 | Msa0230500:intron | 35.0% | |
| TTTGCACTTATGGGAACTAT+TGG | - | chr2_2:2688817-2688836 | Msa0230500:intron | 35.0% | |
| AAAGATGCACAAATTAGTGG+AGG | + | chr2_2:2688884-2688903 | None:intergenic | 35.0% | |
| CTTTATATATGTGACGGTGA+AGG | - | chr2_2:2689029-2689048 | Msa0230500:CDS | 35.0% | |
| ACAAAGTCATTTACTCCACA+GGG | + | chr2_2:2689334-2689353 | None:intergenic | 35.0% | |
| TACAAAGTCATTTACTCCAC+AGG | + | chr2_2:2689335-2689354 | None:intergenic | 35.0% | |
| GGAGTAAATGACTTTGTATG+TGG | - | chr2_2:2689337-2689356 | Msa0230500:intron | 35.0% | |
| AAGACAAAGATCTGTACCAT+TGG | + | chr2_2:2689383-2689402 | None:intergenic | 35.0% | |
| !! | AAGTTTCTTCTGAGGCAATA+TGG | + | chr2_2:2689441-2689460 | None:intergenic | 35.0% |
| TATGGTGATAAAGCAAGTCT+AGG | - | chr2_2:2689466-2689485 | Msa0230500:intron | 35.0% | |
| ! | TTTTTGACGATTTCCAGCAA+TGG | - | chr2_2:2689554-2689573 | Msa0230500:intron | 35.0% |
| CAAGAAACTCTCTCTTTGAA+TGG | + | chr2_2:2689592-2689611 | None:intergenic | 35.0% | |
| CATTCAAAGAGAGAGTTTCT+TGG | - | chr2_2:2689590-2689609 | Msa0230500:intron | 35.0% | |
| ! | CAGCAGGATTAGTGTTTATA+AGG | - | chr2_2:2689635-2689654 | Msa0230500:intron | 35.0% |
| CCAGCCATTTAATAATTGGA+AGG | + | chr2_2:2689680-2689699 | None:intergenic | 35.0% | |
| CCTTCCAATTATTAAATGGC+TGG | - | chr2_2:2689677-2689696 | Msa0230500:intron | 35.0% | |
| ACAGCCAGCCATTTAATAAT+TGG | + | chr2_2:2689684-2689703 | None:intergenic | 35.0% | |
| ! | ATTGCCAAATAGTGGTGTTA+TGG | + | chr2_2:2689815-2689834 | None:intergenic | 35.0% |
| TGCCGCTATTTAACAACATT+GGG | - | chr2_2:2689906-2689925 | Msa0230500:intron | 35.0% | |
| TGCCCAATGTTGTTAAATAG+CGG | + | chr2_2:2689911-2689930 | None:intergenic | 35.0% | |
| !! | GTCCATTTTTCCTTTTGACA+TGG | - | chr2_2:2689941-2689960 | Msa0230500:intron | 35.0% |
| TTACATGAACATGTCTCTGT+TGG | - | chr2_2:2690045-2690064 | Msa0230500:intron | 35.0% | |
| !! | CTAATTTCTGGAGCATTTGA+AGG | + | chr2_2:2690326-2690345 | None:intergenic | 35.0% |
| CTTCAAATGCTCCAGAAATT+AGG | - | chr2_2:2690324-2690343 | Msa0230500:CDS | 35.0% | |
| !! | ATTTTGTAGCCTTGCTTTCT+CGG | - | chr2_2:2690478-2690497 | Msa0230500:five_prime_UTR | 35.0% |
| AAGAGTGAGGAAGGTAGATA+TGG | + | chr2_2:2687596-2687615 | None:intergenic | 40.0% | |
| ATCTACCTTCCTCACTCTTA+CGG | - | chr2_2:2687597-2687616 | Msa0230500:CDS | 40.0% | |
| ! | TGTGATAGTGTTCATGATCC+CGG | - | chr2_2:2687671-2687690 | Msa0230500:intron | 40.0% |
| GCCAATCTTAATCGAACCAA+TGG | - | chr2_2:2687789-2687808 | Msa0230500:intron | 40.0% | |
| !! | GCCATTGGTTCGATTAAGAT+TGG | + | chr2_2:2687793-2687812 | None:intergenic | 40.0% |
| TAATCGAACCAATGGCTACA+TGG | - | chr2_2:2687797-2687816 | Msa0230500:intron | 40.0% | |
| ! | ATGAGTCTTTGGATTGGGTT+AGG | + | chr2_2:2687912-2687931 | None:intergenic | 40.0% |
| GATGAGATGAGTCTTTGGAT+TGG | + | chr2_2:2687918-2687937 | None:intergenic | 40.0% | |
| ACATGGATGAGATGAGTCTT+TGG | + | chr2_2:2687923-2687942 | None:intergenic | 40.0% | |
| TCTACAGGTCAAATGAGACA+TGG | + | chr2_2:2687940-2687959 | None:intergenic | 40.0% | |
| AAACAGACTCAAAGCTCTAC+AGG | + | chr2_2:2687955-2687974 | None:intergenic | 40.0% | |
| !! | GTAGAGCTTTGAGTCTGTTT+AGG | - | chr2_2:2687955-2687974 | Msa0230500:intron | 40.0% |
| TGAGTCTGTTTAGGAAGAGA+TGG | - | chr2_2:2687964-2687983 | Msa0230500:intron | 40.0% | |
| GAGTCTGTTTAGGAAGAGAT+GGG | - | chr2_2:2687965-2687984 | Msa0230500:intron | 40.0% | |
| !! | TATGCTTTAAAGAGGTGACC+TGG | - | chr2_2:2688354-2688373 | Msa0230500:CDS | 40.0% |
| !!! | CCTGGTCTAAAATTTTTGGC+CGG | - | chr2_2:2688372-2688391 | Msa0230500:CDS | 40.0% |
| !!! | CTGGTCTAAAATTTTTGGCC+GGG | - | chr2_2:2688373-2688392 | Msa0230500:CDS | 40.0% |
| !!! | CTAAAATTTTTGGCCGGGTT+TGG | - | chr2_2:2688378-2688397 | Msa0230500:CDS | 40.0% |
| ! | ACATTGCCGGTTAACTGTAT+TGG | + | chr2_2:2688449-2688468 | None:intergenic | 40.0% |
| AATTGCAGCATACACATTGC+CGG | + | chr2_2:2688462-2688481 | None:intergenic | 40.0% | |
| !! | TGCAATTCAGCTTAGCTTGT+TGG | - | chr2_2:2688475-2688494 | Msa0230500:CDS | 40.0% |
| !! | GCAATTCAGCTTAGCTTGTT+GGG | - | chr2_2:2688476-2688495 | Msa0230500:CDS | 40.0% |
| TGAGAAACACACACTCCATT+GGG | + | chr2_2:2688623-2688642 | None:intergenic | 40.0% | |
| TTGAGAAACACACACTCCAT+TGG | + | chr2_2:2688624-2688643 | None:intergenic | 40.0% | |
| AATGGAGTGTGTGTTTCTCA+AGG | - | chr2_2:2688623-2688642 | Msa0230500:intron | 40.0% | |
| TTTCCTCCCTTCAAATCAGA+GGG | - | chr2_2:2688653-2688672 | Msa0230500:intron | 40.0% | |
| !!! | CAAATCTTTAGGACCCCTTT+TGG | + | chr2_2:2688687-2688706 | None:intergenic | 40.0% |
| CGACAAAGGGTCAAATCTTT+AGG | + | chr2_2:2688698-2688717 | None:intergenic | 40.0% | |
| TTTGCGAAAAACCCGACAAA+GGG | + | chr2_2:2688711-2688730 | None:intergenic | 40.0% | |
| ! | TTTTGCGAAAAACCCGACAA+AGG | + | chr2_2:2688712-2688731 | None:intergenic | 40.0% |
| TCTGTAAGGAAGCTTTCTTC+TGG | - | chr2_2:2688773-2688792 | Msa0230500:intron | 40.0% | |
| CTCGAATGCTTACTTCTCTA+TGG | - | chr2_2:2688928-2688947 | Msa0230500:intron | 40.0% | |
| CTCTATGGATGTGAAATCAC+AGG | - | chr2_2:2688943-2688962 | Msa0230500:intron | 40.0% | |
| !!! | GTATTTTGGTGATCGTCTTC+AGG | - | chr2_2:2688965-2688984 | Msa0230500:CDS | 40.0% |
| AATTACTGGAAACCCCAGAT+AGG | + | chr2_2:2689063-2689082 | None:intergenic | 40.0% | |
| !! | TAGGTTCAGTTGCTGATTCA+TGG | - | chr2_2:2689485-2689504 | Msa0230500:intron | 40.0% |
| !! | TTCAGTTGCTGATTCATGGA+AGG | - | chr2_2:2689489-2689508 | Msa0230500:intron | 40.0% |
| AGTTTGAGTCGACCAAGAAA+GGG | - | chr2_2:2689518-2689537 | Msa0230500:intron | 40.0% | |
| ATCGCAGTTGCAGAAAATAG+TGG | - | chr2_2:2689761-2689780 | Msa0230500:intron | 40.0% | |
| AGTGCCATAACACCACTATT+TGG | - | chr2_2:2689808-2689827 | Msa0230500:intron | 40.0% | |
| ACTATAGCGCTATAGCATAG+TGG | + | chr2_2:2689887-2689906 | None:intergenic | 40.0% | |
| ! | GTGCCGCTATTTAACAACAT+TGG | - | chr2_2:2689905-2689924 | Msa0230500:intron | 40.0% |
| ! | TCCTTTTGACATGGTACAGA+TGG | - | chr2_2:2689950-2689969 | Msa0230500:intron | 40.0% |
| TCCATCTGTACCATGTCAAA+AGG | + | chr2_2:2689954-2689973 | None:intergenic | 40.0% | |
| ! | GCTTTATAGCTGCTAGTTTC+TGG | + | chr2_2:2690262-2690281 | None:intergenic | 40.0% |
| ACATACAAAGAGCTCTCATC+AGG | + | chr2_2:2690360-2690379 | None:intergenic | 40.0% | |
| GTTACGACTCAACCCAAACT+AGG | + | chr2_2:2687436-2687455 | None:intergenic | 45.0% | |
| TCAAGGTCACACTCGTAGAA+TGG | - | chr2_2:2687491-2687510 | Msa0230500:three_prime_UTR | 45.0% | |
| !! | ATATGGAAGCACTCTCAGCT+CGG | - | chr2_2:2687525-2687544 | Msa0230500:three_prime_UTR | 45.0% |
| TCAGCTCGGAGCCAATAAAA+TGG | - | chr2_2:2687539-2687558 | Msa0230500:exon | 45.0% | |
| GGAAGAGGAGGAGAAAAAGA+AGG | + | chr2_2:2687575-2687594 | None:intergenic | 45.0% | |
| GAAGGTAGATATGGAAGAGG+AGG | + | chr2_2:2687587-2687606 | None:intergenic | 45.0% | |
| GAGGAAGGTAGATATGGAAG+AGG | + | chr2_2:2687590-2687609 | None:intergenic | 45.0% | |
| ATGAACCGTAAGAGTGAGGA+AGG | + | chr2_2:2687605-2687624 | None:intergenic | 45.0% | |
| GGTAATGAACCGTAAGAGTG+AGG | + | chr2_2:2687609-2687628 | None:intergenic | 45.0% | |
| GTTTCATGATGTCTGTGACG+AGG | - | chr2_2:2688090-2688109 | Msa0230500:intron | 45.0% | |
| ! | CCGGCCAAAAATTTTAGACC+AGG | + | chr2_2:2688375-2688394 | None:intergenic | 45.0% |
| AGCATGACTCTCAGTCTTTC+CGG | - | chr2_2:2688585-2688604 | Msa0230500:intron | 45.0% | |
| CATTGGGTTTACCTGCATTC+CGG | + | chr2_2:2688607-2688626 | None:intergenic | 45.0% | |
| CTTTCCTCCCTTCAAATCAG+AGG | - | chr2_2:2688652-2688671 | Msa0230500:intron | 45.0% | |
| ! | TTACCCTCTGATTTGAAGGG+AGG | + | chr2_2:2688659-2688678 | None:intergenic | 45.0% |
| ! | GGGTTACCCTCTGATTTGAA+GGG | + | chr2_2:2688662-2688681 | None:intergenic | 45.0% |
| ! | AGGGTTACCCTCTGATTTGA+AGG | + | chr2_2:2688663-2688682 | None:intergenic | 45.0% |
| GTAAGGAAGCTTTCTTCTGG+CGG | - | chr2_2:2688776-2688795 | Msa0230500:intron | 45.0% | |
| TAAGGAAGCTTTCTTCTGGC+GGG | - | chr2_2:2688777-2688796 | Msa0230500:intron | 45.0% | |
| CCCATAAGTGCAAACACTCT+GGG | + | chr2_2:2688811-2688830 | None:intergenic | 45.0% | |
| ! | CCCAGAGTGTTTGCACTTAT+GGG | - | chr2_2:2688808-2688827 | Msa0230500:intron | 45.0% |
| TCCCATAAGTGCAAACACTC+TGG | + | chr2_2:2688812-2688831 | None:intergenic | 45.0% | |
| ACCAACACGTGGATCACATA+TGG | + | chr2_2:2688849-2688868 | None:intergenic | 45.0% | |
| TGCACAAATTAGTGGAGGTC+CGG | + | chr2_2:2688879-2688898 | None:intergenic | 45.0% | |
| TGAAGGAGCAAAAGCCTATC+TGG | - | chr2_2:2689046-2689065 | Msa0230500:CDS | 45.0% | |
| GAAGGAGCAAAAGCCTATCT+GGG | - | chr2_2:2689047-2689066 | Msa0230500:CDS | 45.0% | |
| AAGGAGCAAAAGCCTATCTG+GGG | - | chr2_2:2689048-2689067 | Msa0230500:CDS | 45.0% | |
| ACAGATCTTTGTCTTGCTGC+AGG | - | chr2_2:2689388-2689407 | Msa0230500:intron | 45.0% | |
| CAGTTTGAGTCGACCAAGAA+AGG | - | chr2_2:2689517-2689536 | Msa0230500:intron | 45.0% | |
| GTTTGAGTCGACCAAGAAAG+GGG | - | chr2_2:2689519-2689538 | Msa0230500:intron | 45.0% | |
| GAGAGAGTTTCTTGGGCTAT+AGG | - | chr2_2:2689598-2689617 | Msa0230500:intron | 45.0% | |
| AGAGTTTCTTGGGCTATAGG+AGG | - | chr2_2:2689601-2689620 | Msa0230500:intron | 45.0% | |
| GAGTTTCTTGGGCTATAGGA+GGG | - | chr2_2:2689602-2689621 | Msa0230500:intron | 45.0% | |
| GTTATGGCACTATCGCATAG+TGG | + | chr2_2:2689799-2689818 | None:intergenic | 45.0% | |
| AGGAAAGAACCGAGAAAGCA+AGG | + | chr2_2:2690490-2690509 | None:intergenic | 45.0% | |
| !!! | TTTTTTTATATAATATATCA+TGG | - | chr2_2:2688990-2689009 | Msa0230500:CDS | 5.0% |
| !! | TTTTTGGCCGGGTTTGGGAA+AGG | - | chr2_2:2688384-2688403 | Msa0230500:CDS | 50.0% |
| TCTCAGTCTTTCCGGAATGC+AGG | - | chr2_2:2688593-2688612 | Msa0230500:intron | 50.0% | |
| CGGAATGCAGGTAAACCCAA+TGG | - | chr2_2:2688605-2688624 | Msa0230500:intron | 50.0% | |
| GGAGTGTGTGTTTCTCAAGG+TGG | - | chr2_2:2688626-2688645 | Msa0230500:intron | 50.0% | |
| AGAGGGTAACCCTGCCAAAA+GGG | - | chr2_2:2688670-2688689 | Msa0230500:intron | 50.0% | |
| !!! | CTTTAGGACCCCTTTTGGCA+GGG | + | chr2_2:2688682-2688701 | None:intergenic | 50.0% |
| !!! | TCTTTAGGACCCCTTTTGGC+AGG | + | chr2_2:2688683-2688702 | None:intergenic | 50.0% |
| ATCCTGCACTGCTGTCTGTA+AGG | - | chr2_2:2688759-2688778 | Msa0230500:intron | 50.0% | |
| TTCCTTACAGACAGCAGTGC+AGG | + | chr2_2:2688764-2688783 | None:intergenic | 50.0% | |
| AAGGAAGCTTTCTTCTGGCG+GGG | - | chr2_2:2688778-2688797 | Msa0230500:intron | 50.0% | |
| ! | GCCCAGAGTGTTTGCACTTA+TGG | - | chr2_2:2688807-2688826 | Msa0230500:intron | 50.0% |
| GCCATATGTGATCCACGTGT+TGG | - | chr2_2:2688845-2688864 | Msa0230500:intron | 50.0% | |
| GCACAAATTAGTGGAGGTCC+GGG | + | chr2_2:2688878-2688897 | None:intergenic | 50.0% | |
| TATGTGGTAGGGCTGCTGAA+TGG | - | chr2_2:2689353-2689372 | Msa0230500:intron | 50.0% | |
| ATGTGGTAGGGCTGCTGAAT+GGG | - | chr2_2:2689354-2689373 | Msa0230500:intron | 50.0% | |
| GACCAAGAAAGGGGAGAACT+CGG | - | chr2_2:2689528-2689547 | Msa0230500:intron | 50.0% | |
| ACGATTTCCAGCAATGGACG+AGG | - | chr2_2:2689560-2689579 | Msa0230500:intron | 50.0% | |
| CGATTTCCAGCAATGGACGA+GGG | - | chr2_2:2689561-2689580 | Msa0230500:intron | 50.0% | |
| TTCTTGGGCTATAGGAGGGA+TGG | - | chr2_2:2689606-2689625 | Msa0230500:intron | 50.0% | |
| !! | TAGCTGCTAGTTTCTGGCGT+TGG | + | chr2_2:2690256-2690275 | None:intergenic | 50.0% |
| GATCGCACCTTTCCCAAACC+CGG | + | chr2_2:2688394-2688413 | None:intergenic | 55.0% | |
| CAGAGGGTAACCCTGCCAAA+AGG | - | chr2_2:2688669-2688688 | Msa0230500:intron | 55.0% | |
| GAGGGTAACCCTGCCAAAAG+GGG | - | chr2_2:2688671-2688690 | Msa0230500:intron | 55.0% | |
| GCTGCTGAATGGGTCTCCAA+TGG | - | chr2_2:2689364-2689383 | Msa0230500:intron | 55.0% | |
| CACCGAGTTCTCCCCTTTCT+TGG | + | chr2_2:2689533-2689552 | None:intergenic | 55.0% | |
| GCATATCCCTCGTCCATTGC+TGG | + | chr2_2:2689570-2689589 | None:intergenic | 55.0% | |
| !! | GGAGGGATGGTTCTAACAGC+AGG | - | chr2_2:2689619-2689638 | Msa0230500:intron | 55.0% |
| CAGCTATAAAGCGCACCGCA+AGG | - | chr2_2:2690270-2690289 | Msa0230500:intron | 55.0% | |
| AAGGAAGCTGGGAAGCAGGA+TGG | - | chr2_2:2690289-2690308 | Msa0230500:intron | 55.0% | |
| ! | CCACGTGTTGGTACTCAGCC+CGG | - | chr2_2:2688857-2688876 | Msa0230500:intron | 60.0% |
| CACCAGGTTCTTGCACCCTG+TGG | - | chr2_2:2689316-2689335 | Msa0230500:intron | 60.0% | |
| CTCCACAGGGTGCAAGAACC+TGG | + | chr2_2:2689321-2689340 | None:intergenic | 60.0% | |
| AAAGCGCACCGCAAGGAAGC+TGG | - | chr2_2:2690277-2690296 | Msa0230500:intron | 60.0% | |
| AAGCGCACCGCAAGGAAGCT+GGG | - | chr2_2:2690278-2690297 | Msa0230500:intron | 60.0% | |
| CCTGCTTCCCAGCTTCCTTG+CGG | + | chr2_2:2690288-2690307 | None:intergenic | 60.0% | |
| GAAGCTGGGAAGCAGGATGG+CGG | - | chr2_2:2690292-2690311 | Msa0230500:CDS | 60.0% | |
| CCGGGCTGAGTACCAACACG+TGG | + | chr2_2:2688860-2688879 | None:intergenic | 65.0% | |
| CCGCAAGGAAGCTGGGAAGC+AGG | - | chr2_2:2690285-2690304 | Msa0230500:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 2687308 | 2690601 | 2687308 | ID=Msa0230500;Name=Msa0230500 |
| chr2_2 | mRNA | 2687308 | 2690601 | 2687308 | ID=Msa0230500-mRNA-1;Parent=Msa0230500;Name=Msa0230500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=202|0.4|0.33|1|0.4|0.16|6|240|290 |
| chr2_2 | exon | 2687308 | 2687674 | 2687308 | ID=Msa0230500-mRNA-1:exon:940;Parent=Msa0230500-mRNA-1 |
| chr2_2 | exon | 2688262 | 2688499 | 2688262 | ID=Msa0230500-mRNA-1:exon:939;Parent=Msa0230500-mRNA-1 |
| chr2_2 | exon | 2688524 | 2688587 | 2688524 | ID=Msa0230500-mRNA-1:exon:938;Parent=Msa0230500-mRNA-1 |
| chr2_2 | exon | 2688945 | 2689175 | 2688945 | ID=Msa0230500-mRNA-1:exon:937;Parent=Msa0230500-mRNA-1 |
| chr2_2 | exon | 2689191 | 2689294 | 2689191 | ID=Msa0230500-mRNA-1:exon:936;Parent=Msa0230500-mRNA-1 |
| chr2_2 | exon | 2690291 | 2690601 | 2690291 | ID=Msa0230500-mRNA-1:exon:935;Parent=Msa0230500-mRNA-1 |
| chr2_2 | five_prime_UTR | 2690400 | 2690601 | 2690400 | ID=Msa0230500-mRNA-1:five_prime_utr;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2690291 | 2690399 | 2690291 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2689191 | 2689294 | 2689191 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2688945 | 2689175 | 2688945 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2688524 | 2688587 | 2688524 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2688262 | 2688499 | 2688262 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | CDS | 2687548 | 2687674 | 2687548 | ID=Msa0230500-mRNA-1:cds;Parent=Msa0230500-mRNA-1 |
| chr2_2 | three_prime_UTR | 2687308 | 2687547 | 2687308 | ID=Msa0230500-mRNA-1:three_prime_utr;Parent=Msa0230500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
