Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173340 | XP_003591235.1 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.07e-166 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173340 | sp|O73944|PCP_PYRFU | 32.796 | 186 | 103 | 6 | 13 | 196 | 3 | 168 | 1.07e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173340 | G7IAA5 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 5.12e-167 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116440 | Msa0173340 | 0.884549 | 1.743528e-71 | -8.615850e-47 |
| Msa0173340 | Msa0415640 | 0.808541 | 2.943644e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173340 | MtrunA17_Chr1g0193061 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 9.86e-171 | 468 |
| Msa0173340 | MtrunA17_Chr8g0365921 | 65.455 | 220 | 71 | 3 | 1 | 219 | 1 | 216 | 1.48e-104 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173340 | AT1G56700.1 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0173340 | AT1G56700.2 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0173340 | AT1G56700.4 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0173340 | AT1G23440.1 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.48e-106 | 306 |
| Msa0173340 | AT1G23440.3 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.48e-106 | 306 |
| Msa0173340 | AT1G56700.3 | 69.841 | 189 | 56 | 1 | 32 | 220 | 1 | 188 | 4.45e-100 | 289 |
| Msa0173340 | AT1G23440.2 | 53.191 | 94 | 40 | 2 | 1 | 94 | 1 | 90 | 6.56e-30 | 107 |
Find 79 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCCAATAAAATTATC+TGG | 0.221027 | 1_4:+58579916 | Msa0173340:CDS |
| ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1_4:+58580303 | Msa0173340:intron |
| TACTAACTTTCAGTACTTAT+CGG | 0.280185 | 1_4:-58581499 | None:intergenic |
| ATTGTCTTCATTCCATTTCC+TGG | 0.292689 | 1_4:+58578712 | Msa0173340:five_prime_UTR |
| ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1_4:+58581180 | Msa0173340:CDS |
| CTTTCGTTGCCCTGATGAAA+TGG | 0.302855 | 1_4:+58580383 | Msa0173340:CDS |
| ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1_4:-58580536 | None:intergenic |
| AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1_4:-58581171 | None:intergenic |
| ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1_4:-58581191 | None:intergenic |
| GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1_4:+58579693 | Msa0173340:CDS |
| GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1_4:-58580393 | None:intergenic |
| CTGAGGCAAGCTGACATCTT+AGG | 0.349819 | 1_4:+58581384 | Msa0173340:three_prime_UTR |
| TCCTATTCCTTACCAGGAAA+TGG | 0.372630 | 1_4:-58578724 | None:intergenic |
| AATAAGATATTGTTATGAAA+TGG | 0.383641 | 1_4:+58581321 | Msa0173340:three_prime_UTR |
| CCCAGCTCATGTAATTGTTC+TGG | 0.386886 | 1_4:+58581224 | Msa0173340:exon |
| AATTTATAACATTTCATTCA+AGG | 0.392637 | 1_4:-58581281 | None:intergenic |
| TGCCAAAGGGTTTAGCTATC+GGG | 0.396835 | 1_4:+58579799 | Msa0173340:CDS |
| TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1_4:-58579889 | None:intergenic |
| CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1_4:+58581084 | Msa0173340:CDS |
| ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1_4:-58581008 | None:intergenic |
| GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1_4:-58581170 | None:intergenic |
| ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1_4:+58581077 | Msa0173340:CDS |
| ACCAGAACAATTACATGAGC+TGG | 0.432033 | 1_4:-58581225 | None:intergenic |
| CGGACCCCATCTGCGGATGA+TGG | 0.434904 | 1_4:-58579653 | None:intergenic |
| ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1_4:-58579898 | None:intergenic |
| TTGCCAAAGGGTTTAGCTAT+CGG | 0.445632 | 1_4:+58579798 | Msa0173340:CDS |
| TTATTCACAATTGTCTCCGT+TGG | 0.459045 | 1_4:-58579747 | None:intergenic |
| GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1_4:-58580992 | None:intergenic |
| ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1_4:+58580531 | Msa0173340:CDS |
| TGTTGTCATGCTTCTGAGAA+TGG | 0.469604 | 1_4:+58581247 | Msa0173340:three_prime_UTR |
| GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1_4:+58580512 | Msa0173340:CDS |
| GAATTTATCTGATCAAAGAA+TGG | 0.481561 | 1_4:-58581569 | None:intergenic |
| GACAATTGTGAATAATTTGA+CGG | 0.484102 | 1_4:+58579755 | Msa0173340:CDS |
| TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1_4:-58579673 | None:intergenic |
| CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1_4:-58580535 | None:intergenic |
| TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1_4:+58579825 | Msa0173340:CDS |
| TTTCGTTGCCCTGATGAAAT+GGG | 0.506031 | 1_4:+58580384 | Msa0173340:CDS |
| CTCCCGATAGCTAAACCCTT+TGG | 0.506502 | 1_4:-58579801 | None:intergenic |
| TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1_4:-58579872 | None:intergenic |
| ACTCAAAGCAAATTAACTAC+TGG | 0.506768 | 1_4:-58578654 | None:intergenic |
| ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1_4:-58581014 | None:intergenic |
| ACAGGTTTCAAGAAATTCCA+TGG | 0.515589 | 1_4:+58579711 | Msa0173340:CDS |
| AAGTTCCAATAAAATTATCT+GGG | 0.531862 | 1_4:+58579917 | Msa0173340:CDS |
| CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1_4:-58580516 | None:intergenic |
| GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1_4:-58580515 | None:intergenic |
| TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1_4:-58580988 | None:intergenic |
| TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1_4:-58581142 | None:intergenic |
| ATTAGACCATCATCCGCAGA+TGG | 0.550739 | 1_4:+58579647 | Msa0173340:exon |
| CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1_4:-58580524 | None:intergenic |
| TTGGATTCTCTGAAACTCCA+TGG | 0.559574 | 1_4:-58579728 | None:intergenic |
| ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1_4:-58579857 | None:intergenic |
| GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1_4:+58579881 | Msa0173340:CDS |
| CTTTGATCAGATAAATTCGA+GGG | 0.568130 | 1_4:+58581574 | Msa0173340:three_prime_UTR |
| GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1_4:-58579864 | None:intergenic |
| CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1_4:+58579657 | Msa0173340:exon |
| ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1_4:+58581007 | Msa0173340:CDS |
| ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1_4:+58579831 | Msa0173340:CDS |
| TTAGACCATCATCCGCAGAT+GGG | 0.590599 | 1_4:+58579648 | Msa0173340:exon |
| GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1_4:+58580997 | Msa0173340:CDS |
| CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1_4:+58581094 | Msa0173340:CDS |
| CCAGAACAATTACATGAGCT+GGG | 0.598749 | 1_4:-58581224 | None:intergenic |
| TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1_4:+58580532 | Msa0173340:CDS |
| TCTTTGATCAGATAAATTCG+AGG | 0.603413 | 1_4:+58581573 | Msa0173340:three_prime_UTR |
| GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1_4:+58580325 | Msa0173340:CDS |
| GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1_4:-58580987 | None:intergenic |
| GGACCTTCGGACCCCATCTG+CGG | 0.617904 | 1_4:-58579660 | None:intergenic |
| GTTGCCCTGATGAAATGGGA+TGG | 0.621218 | 1_4:+58580388 | Msa0173340:CDS |
| TAGACCATCATCCGCAGATG+GGG | 0.622906 | 1_4:+58579649 | Msa0173340:exon |
| TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1_4:+58580398 | Msa0173340:CDS |
| CATTTCATCAGGGCAACGAA+AGG | 0.628367 | 1_4:-58580382 | None:intergenic |
| ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1_4:-58579681 | None:intergenic |
| TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1_4:+58580976 | Msa0173340:intron |
| GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1_4:-58580392 | None:intergenic |
| TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1_4:-58579856 | None:intergenic |
| CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1_4:+58580535 | Msa0173340:CDS |
| TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1_4:+58581041 | Msa0173340:CDS |
| GTAATGACATCTGATGATGC+AGG | 0.664436 | 1_4:+58581037 | Msa0173340:CDS |
| AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1_4:+58580356 | Msa0173340:CDS |
| TGGAGTTTCAGAGAATCCAA+CGG | 0.696242 | 1_4:+58579731 | Msa0173340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATATGATAATATAATTA+TGG | + | chr1_4:58580125-58580144 | Msa0173340:intron | 10.0% |
| !! | TATATTATCATATCTAAACA+AGG | - | chr1_4:58580121-58580140 | None:intergenic | 15.0% |
| !! | AATTTATAACATTTCATTCA+AGG | - | chr1_4:58581284-58581303 | None:intergenic | 15.0% |
| !! | AATAAGATATTGTTATGAAA+TGG | + | chr1_4:58581321-58581340 | Msa0173340:three_prime_UTR | 15.0% |
| !! | TTATGAAATGGAAATAAAAA+TGG | + | chr1_4:58581333-58581352 | Msa0173340:three_prime_UTR | 15.0% |
| !!! | CTTTTGTTTCTAAATCTAAT+CGG | + | chr1_4:58578623-58578642 | Msa0173340:five_prime_UTR | 20.0% |
| !!! | ACATAATCTTGCAAATTTTA+AGG | - | chr1_4:58579020-58579039 | None:intergenic | 20.0% |
| !! | TTCAACATGAAAACATAATT+GGG | - | chr1_4:58579048-58579067 | None:intergenic | 20.0% |
| !! | ATTCAACATGAAAACATAAT+TGG | - | chr1_4:58579049-58579068 | None:intergenic | 20.0% |
| !!! | GTATTTTTAAGTGATGATTT+TGG | + | chr1_4:58579483-58579502 | Msa0173340:intron | 20.0% |
| !! | AAGTTCCAATAAAATTATCT+GGG | + | chr1_4:58579917-58579936 | Msa0173340:CDS | 20.0% |
| !! | TACATAAATAAAACTTCAGA+AGG | - | chr1_4:58580016-58580035 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATAAAAGTTTTA+TGG | - | chr1_4:58580492-58580511 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTAAATATTTTTG+AGG | - | chr1_4:58580675-58580694 | None:intergenic | 20.0% |
| !!! | AGTAATTTACAGTGTTTTTT+CGG | + | chr1_4:58581521-58581540 | Msa0173340:three_prime_UTR | 20.0% |
| ! | AATTAATAATCCTCAGAAGA+AGG | + | chr1_4:58578801-58578820 | Msa0173340:intron | 25.0% |
| !! | TTATGTTCTTTTGTATTTCG+AGG | + | chr1_4:58578849-58578868 | Msa0173340:intron | 25.0% |
| !!! | GTTGTTAAGATTTTAAGTTG+TGG | + | chr1_4:58579216-58579235 | Msa0173340:intron | 25.0% |
| !!! | TAAGATTTTAAGTTGTGGTT+TGG | + | chr1_4:58579221-58579240 | Msa0173340:intron | 25.0% |
| !! | TGTTTCTGTATATGATGATA+TGG | + | chr1_4:58579518-58579537 | Msa0173340:intron | 25.0% |
| !!! | TTTTACTTGTCATTTAATGC+AGG | + | chr1_4:58579585-58579604 | Msa0173340:intron | 25.0% |
| ! | GTAACAACAGTTTATATAAC+AGG | + | chr1_4:58579693-58579712 | Msa0173340:CDS | 25.0% |
| ! | GACAATTGTGAATAATTTGA+CGG | + | chr1_4:58579755-58579774 | Msa0173340:CDS | 25.0% |
| ! | CAAGTTCCAATAAAATTATC+TGG | + | chr1_4:58579916-58579935 | Msa0173340:CDS | 25.0% |
| ! | ATCATATCTAAACAAGGATA+CGG | - | chr1_4:58580115-58580134 | None:intergenic | 25.0% |
| ! | TTAGCATAGAACTGAAATAA+TGG | + | chr1_4:58580203-58580222 | Msa0173340:intron | 25.0% |
| ! | TTATCATGAATCTTATGTTC+TGG | + | chr1_4:58580278-58580297 | Msa0173340:intron | 25.0% |
| ! | GTACAAATATGAAAATGTTG+AGG | + | chr1_4:58580620-58580639 | Msa0173340:intron | 25.0% |
| ! | TTGTGAAATGATACTTAGAA+TGG | - | chr1_4:58580702-58580721 | None:intergenic | 25.0% |
| ! | ATGTTTACTATCATTCTCTT+CGG | + | chr1_4:58581077-58581096 | Msa0173340:CDS | 25.0% |
| ! | TACTAACTTTCAGTACTTAT+CGG | - | chr1_4:58581502-58581521 | None:intergenic | 25.0% |
| ! | GAATTTATCTGATCAAAGAA+TGG | - | chr1_4:58581572-58581591 | None:intergenic | 25.0% |
| ACTCAAAGCAAATTAACTAC+TGG | - | chr1_4:58578657-58578676 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTTCCTTCTTCTG+AGG | - | chr1_4:58578814-58578833 | None:intergenic | 30.0% |
| TCATGTTGAATACTGTCATT+AGG | + | chr1_4:58579058-58579077 | Msa0173340:intron | 30.0% | |
| !!! | TTTTGAGTTCTTGAGTGAAA+TGG | + | chr1_4:58579112-58579131 | Msa0173340:intron | 30.0% |
| TGCACTATGATGCTTAATAT+TGG | + | chr1_4:58579250-58579269 | Msa0173340:intron | 30.0% | |
| ACGGAATATGTGAAAAAGAA+GGG | + | chr1_4:58579774-58579793 | Msa0173340:CDS | 30.0% | |
| ! | ACTCACCCAGATAATTTTAT+TGG | - | chr1_4:58579925-58579944 | None:intergenic | 30.0% |
| ! | AATGGTAAGAAAGTTCTAGT+TGG | + | chr1_4:58580221-58580240 | Msa0173340:intron | 30.0% |
| ATGAAAACAAGTTTAACCTG+TGG | - | chr1_4:58580417-58580436 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATCAACCCTTTT+AGG | + | chr1_4:58580427-58580446 | Msa0173340:intron | 30.0% |
| ! | TAATAGAGTACTTCAAGATC+AGG | - | chr1_4:58580453-58580472 | None:intergenic | 30.0% |
| ! | TTTTATGGAACTGTCACTAA+AGG | - | chr1_4:58580477-58580496 | None:intergenic | 30.0% |
| ! | TTCATTTTCAAAAACTTGCG+AGG | + | chr1_4:58580765-58580784 | Msa0173340:intron | 30.0% |
| TTAGGACAAAAGACAAAGTT+AGG | - | chr1_4:58580953-58580972 | None:intergenic | 30.0% | |
| TCATTTATTGTGAAGAAGAG+TGG | - | chr1_4:58581145-58581164 | None:intergenic | 30.0% | |
| ATTAGCAAGTACCTCTAATA+AGG | - | chr1_4:58581194-58581213 | None:intergenic | 30.0% | |
| TCTTTGATCAGATAAATTCG+AGG | + | chr1_4:58581573-58581592 | Msa0173340:three_prime_UTR | 30.0% | |
| CTTTGATCAGATAAATTCGA+GGG | + | chr1_4:58581574-58581593 | Msa0173340:three_prime_UTR | 30.0% | |
| ATTGTCTTCATTCCATTTCC+TGG | + | chr1_4:58578712-58578731 | Msa0173340:five_prime_UTR | 35.0% | |
| AATCAATCCTATTCCTTACC+AGG | - | chr1_4:58578733-58578752 | None:intergenic | 35.0% | |
| TTCCTTGTTCCTTCATCATT+TGG | + | chr1_4:58578881-58578900 | Msa0173340:intron | 35.0% | |
| AACCAAATGATGAAGGAACA+AGG | - | chr1_4:58578886-58578905 | None:intergenic | 35.0% | |
| AATACTGTCATTAGGATGTC+AGG | + | chr1_4:58579066-58579085 | Msa0173340:intron | 35.0% | |
| ATACTGTCATTAGGATGTCA+GGG | + | chr1_4:58579067-58579086 | Msa0173340:intron | 35.0% | |
| GATGTCAGGGATTACAAAAT+TGG | + | chr1_4:58579080-58579099 | Msa0173340:intron | 35.0% | |
| CTTAATATTGGTGAGAATCG+CGG | + | chr1_4:58579262-58579281 | Msa0173340:intron | 35.0% | |
| CAACAATTGTGATCATGTTG+TGG | + | chr1_4:58579311-58579330 | Msa0173340:intron | 35.0% | |
| AATTGGATCACAATTGTTGC+AGG | + | chr1_4:58579343-58579362 | Msa0173340:intron | 35.0% | |
| ATTGGATCACAATTGTTGCA+GGG | + | chr1_4:58579344-58579363 | Msa0173340:intron | 35.0% | |
| ! | CAAAGTTTGATAGCATGATG+TGG | + | chr1_4:58579452-58579471 | Msa0173340:intron | 35.0% |
| TATATGATGATATGGTCCAC+TGG | + | chr1_4:58579526-58579545 | Msa0173340:intron | 35.0% | |
| ACAGGTTTCAAGAAATTCCA+TGG | + | chr1_4:58579711-58579730 | Msa0173340:CDS | 35.0% | |
| TTATTCACAATTGTCTCCGT+TGG | - | chr1_4:58579750-58579769 | None:intergenic | 35.0% | |
| GACGGAATATGTGAAAAAGA+AGG | + | chr1_4:58579773-58579792 | Msa0173340:CDS | 35.0% | |
| AAAAAGAAGGGTTTGCCAAA+GGG | + | chr1_4:58579786-58579805 | Msa0173340:CDS | 35.0% | |
| TGTAGTATTCTTGATACTGC+TGG | + | chr1_4:58579825-58579844 | Msa0173340:CDS | 35.0% | |
| TTCAGATTCCTTGGCAATAA+CGG | - | chr1_4:58579892-58579911 | None:intergenic | 35.0% | |
| ACTTGAAGATTCAGATTCCT+TGG | - | chr1_4:58579901-58579920 | None:intergenic | 35.0% | |
| CTACACACAAAGTATGACTA+AGG | - | chr1_4:58579979-58579998 | None:intergenic | 35.0% | |
| CTTAGTCATACTTTGTGTGT+AGG | + | chr1_4:58579977-58579996 | Msa0173340:intron | 35.0% | |
| AAGATCACTGGAATTTGACA+TGG | + | chr1_4:58580163-58580182 | Msa0173340:intron | 35.0% | |
| ! | ATGTTTGTTCAGCTGCATTT+TGG | + | chr1_4:58580303-58580322 | Msa0173340:intron | 35.0% |
| ! | TGTTTGTTCAGCTGCATTTT+GGG | + | chr1_4:58580304-58580323 | Msa0173340:intron | 35.0% |
| ! | TTTTCGATTATCTGAGTCCT+TGG | + | chr1_4:58580724-58580743 | Msa0173340:intron | 35.0% |
| ! | CACAAAGTTTCTAGATACCA+AGG | - | chr1_4:58580744-58580763 | None:intergenic | 35.0% |
| AAAACACGGAACAGTCATTA+AGG | - | chr1_4:58580909-58580928 | None:intergenic | 35.0% | |
| ! | ATTTGCTGCTTCCTTATTAG+AGG | + | chr1_4:58581180-58581199 | Msa0173340:CDS | 35.0% |
| ! | TTTTAGCCCTTAAAATGCTG+AGG | + | chr1_4:58581367-58581386 | Msa0173340:three_prime_UTR | 35.0% |
| !! | TTTTCGGTTTGATGCTCAAT+AGG | + | chr1_4:58581537-58581556 | Msa0173340:three_prime_UTR | 35.0% |
| CTTCATTCCATTTCCTGGTA+AGG | + | chr1_4:58578717-58578736 | Msa0173340:intron | 40.0% | |
| TCCATTTCCTGGTAAGGAAT+AGG | + | chr1_4:58578723-58578742 | Msa0173340:intron | 40.0% | |
| TCCTATTCCTTACCAGGAAA+TGG | - | chr1_4:58578727-58578746 | None:intergenic | 40.0% | |
| ATCACGCAACCAAATGATGA+AGG | - | chr1_4:58578893-58578912 | None:intergenic | 40.0% | |
| CTTTGTGTCATCGTTGAAAC+TGG | + | chr1_4:58578968-58578987 | Msa0173340:intron | 40.0% | |
| TGTTGTGGTGATATCGCAAT+TGG | + | chr1_4:58579326-58579345 | Msa0173340:intron | 40.0% | |
| ATATGGTCCACTGGATAAGA+AGG | + | chr1_4:58579535-58579554 | Msa0173340:intron | 40.0% | |
| AACCAAACCTTCTTATCCAG+TGG | - | chr1_4:58579545-58579564 | None:intergenic | 40.0% | |
| !! | TTGGATTCTCTGAAACTCCA+TGG | - | chr1_4:58579731-58579750 | None:intergenic | 40.0% |
| TGGAGTTTCAGAGAATCCAA+CGG | + | chr1_4:58579731-58579750 | Msa0173340:CDS | 40.0% | |
| GAAAAAGAAGGGTTTGCCAA+AGG | + | chr1_4:58579785-58579804 | Msa0173340:CDS | 40.0% | |
| TTGCCAAAGGGTTTAGCTAT+CGG | + | chr1_4:58579798-58579817 | Msa0173340:CDS | 40.0% | |
| ATTCTTGATACTGCTGGACA+AGG | + | chr1_4:58579831-58579850 | Msa0173340:CDS | 40.0% | |
| TAACTGCGACTAAAGATCAC+TGG | + | chr1_4:58580151-58580170 | Msa0173340:intron | 40.0% | |
| ! | GTTTGTTCAGCTGCATTTTG+GGG | + | chr1_4:58580305-58580324 | Msa0173340:intron | 40.0% |
| TTTCGTTGCCCTGATGAAAT+GGG | + | chr1_4:58580384-58580403 | Msa0173340:CDS | 40.0% | |
| CTTCAAGATCAGGCCTAAAA+GGG | - | chr1_4:58580443-58580462 | None:intergenic | 40.0% | |
| ACTTCAAGATCAGGCCTAAA+AGG | - | chr1_4:58580444-58580463 | None:intergenic | 40.0% | |
| ATGGCCCGATTTCAAGAATA+CGG | + | chr1_4:58580531-58580550 | Msa0173340:CDS | 40.0% | |
| ACCTCCCGTATTCTTGAAAT+CGG | - | chr1_4:58580539-58580558 | None:intergenic | 40.0% | |
| CAAGAATACGGGAGGTAAAT+TGG | + | chr1_4:58580543-58580562 | Msa0173340:intron | 40.0% | |
| AACAAGTCTTTGCCTCTTGA+TGG | + | chr1_4:58580808-58580827 | Msa0173340:intron | 40.0% | |
| AGGTGCAAGTGCAAAGATAT+TGG | + | chr1_4:58580840-58580859 | Msa0173340:intron | 40.0% | |
| !!! | TGTTCCGTGTTTTTGAGATG+CGG | + | chr1_4:58580916-58580935 | Msa0173340:intron | 40.0% |
| ACAACCGCATCTCAAAAACA+CGG | - | chr1_4:58580923-58580942 | None:intergenic | 40.0% | |
| AGGGTAGTCTGCATAAAGTT+AGG | - | chr1_4:58580971-58580990 | None:intergenic | 40.0% | |
| ATCATAACCTTTCGTTGCCA+AGG | - | chr1_4:58581017-58581036 | None:intergenic | 40.0% | |
| ! | GTAATGACATCTGATGATGC+AGG | + | chr1_4:58581037-58581056 | Msa0173340:CDS | 40.0% |
| GGAAGCAGCAAATTGCATTT+GGG | - | chr1_4:58581173-58581192 | None:intergenic | 40.0% | |
| AGGAAGCAGCAAATTGCATT+TGG | - | chr1_4:58581174-58581193 | None:intergenic | 40.0% | |
| CCAGAACAATTACATGAGCT+GGG | - | chr1_4:58581227-58581246 | None:intergenic | 40.0% | |
| ACCAGAACAATTACATGAGC+TGG | - | chr1_4:58581228-58581247 | None:intergenic | 40.0% | |
| ! | TGTTGTCATGCTTCTGAGAA+TGG | + | chr1_4:58581247-58581266 | Msa0173340:three_prime_UTR | 40.0% |
| ! | AGCTTGCCTCAGCATTTTAA+GGG | - | chr1_4:58581376-58581395 | None:intergenic | 40.0% |
| !! | GTTTTGATGCGATGAGATCG+TGG | + | chr1_4:58579376-58579395 | Msa0173340:intron | 45.0% |
| TGAGATCGTGGTCCAAATTG+TGG | + | chr1_4:58579388-58579407 | Msa0173340:intron | 45.0% | |
| GTCCACTGGATAAGAAGGTT+TGG | + | chr1_4:58579540-58579559 | Msa0173340:intron | 45.0% | |
| ATTAGACCATCATCCGCAGA+TGG | + | chr1_4:58579647-58579666 | Msa0173340:exon | 45.0% | |
| TTAGACCATCATCCGCAGAT+GGG | + | chr1_4:58579648-58579667 | Msa0173340:exon | 45.0% | |
| ACTGTTGTTACAGCAGCTGA+AGG | - | chr1_4:58579684-58579703 | None:intergenic | 45.0% | |
| TGCCAAAGGGTTTAGCTATC+GGG | + | chr1_4:58579799-58579818 | Msa0173340:CDS | 45.0% | |
| GATTGCAATGTCTGGTACAG+CGG | - | chr1_4:58579867-58579886 | None:intergenic | 45.0% | |
| TAACGGCAGATTGCAATGTC+TGG | - | chr1_4:58579875-58579894 | None:intergenic | 45.0% | |
| ATTATCTGGGTGAGTTGCCA+AGG | + | chr1_4:58579930-58579949 | Msa0173340:intron | 45.0% | |
| ACTCACAAAGTAGGGATCCT+TGG | - | chr1_4:58579950-58579969 | None:intergenic | 45.0% | |
| AGGATCCCTACTTTGTGAGT+AGG | + | chr1_4:58579950-58579969 | Msa0173340:intron | 45.0% | |
| GGATCCCTACTTTGTGAGTA+GGG | + | chr1_4:58579951-58579970 | Msa0173340:intron | 45.0% | |
| !!! | CTGCATTTTGGGGTTAACAG+TGG | + | chr1_4:58580315-58580334 | Msa0173340:CDS | 45.0% |
| AGAACGTCAAGCTGTCAATG+AGG | + | chr1_4:58580356-58580375 | Msa0173340:CDS | 45.0% | |
| CATTTCATCAGGGCAACGAA+AGG | - | chr1_4:58580385-58580404 | None:intergenic | 45.0% | |
| CTTTCGTTGCCCTGATGAAA+TGG | + | chr1_4:58580383-58580402 | Msa0173340:CDS | 45.0% | |
| GCTTCCATCCCATTTCATCA+GGG | - | chr1_4:58580395-58580414 | None:intergenic | 45.0% | |
| GTTCCCATTGTTCCTTCAGA+TGG | + | chr1_4:58580512-58580531 | Msa0173340:CDS | 45.0% | |
| TGGCCCGATTTCAAGAATAC+GGG | + | chr1_4:58580532-58580551 | Msa0173340:CDS | 45.0% | |
| CCTCCCGTATTCTTGAAATC+GGG | - | chr1_4:58580538-58580557 | None:intergenic | 45.0% | |
| GTTCTCTCGAGTTCAGTGTT+TGG | + | chr1_4:58580598-58580617 | Msa0173340:intron | 45.0% | |
| AAGTCTTTGCCTCTTGATGG+AGG | + | chr1_4:58580811-58580830 | Msa0173340:intron | 45.0% | |
| CCTTATATGCCTCCATCAAG+AGG | - | chr1_4:58580823-58580842 | None:intergenic | 45.0% | |
| ! | CCTCTTGATGGAGGCATATA+AGG | + | chr1_4:58580820-58580839 | Msa0173340:intron | 45.0% |
| ! | TGACATCTGATGATGCAGGA+AGG | + | chr1_4:58581041-58581060 | Msa0173340:CDS | 45.0% |
| ! | CTATCATTCTCTTCGGTTCG+CGG | + | chr1_4:58581084-58581103 | Msa0173340:CDS | 45.0% |
| CCCAGCTCATGTAATTGTTC+TGG | + | chr1_4:58581224-58581243 | Msa0173340:exon | 45.0% | |
| ! | CAGCTTGCCTCAGCATTTTA+AGG | - | chr1_4:58581377-58581396 | None:intergenic | 45.0% |
| !!! | TTTTATAATATCATTTATTT+TGG | + | chr1_4:58580647-58580666 | Msa0173340:intron | 5.0% |
| CGGTCAACTGACGCTGATAT+GGG | + | chr1_4:58579282-58579301 | Msa0173340:intron | 50.0% | |
| TAGACCATCATCCGCAGATG+GGG | + | chr1_4:58579649-58579668 | Msa0173340:exon | 50.0% | |
| TACAGCAGCTGAAGGACCTT+CGG | - | chr1_4:58579676-58579695 | None:intergenic | 50.0% | |
| CTCCCGATAGCTAAACCCTT+TGG | - | chr1_4:58579804-58579823 | None:intergenic | 50.0% | |
| TGTCTGGTACAGCGGAACAA+GGG | - | chr1_4:58579859-58579878 | None:intergenic | 50.0% | |
| ATGTCTGGTACAGCGGAACA+AGG | - | chr1_4:58579860-58579879 | None:intergenic | 50.0% | |
| GCAATCTGCCGTTATTGCCA+AGG | + | chr1_4:58579881-58579900 | Msa0173340:CDS | 50.0% | |
| GGCTCCCTACTCACAAAGTA+GGG | - | chr1_4:58579958-58579977 | None:intergenic | 50.0% | |
| AGGCTCCCTACTCACAAAGT+AGG | - | chr1_4:58579959-58579978 | None:intergenic | 50.0% | |
| GGGTTAACAGTGGTGCAACA+AGG | + | chr1_4:58580325-58580344 | Msa0173340:CDS | 50.0% | |
| GTTGCCCTGATGAAATGGGA+TGG | + | chr1_4:58580388-58580407 | Msa0173340:CDS | 50.0% | |
| GGCTTCCATCCCATTTCATC+AGG | - | chr1_4:58580396-58580415 | None:intergenic | 50.0% | |
| TGAAATGGGATGGAAGCCAC+AGG | + | chr1_4:58580398-58580417 | Msa0173340:CDS | 50.0% | |
| GGGCCATCTGAAGGAACAAT+GGG | - | chr1_4:58580518-58580537 | None:intergenic | 50.0% | |
| CTTGAAATCGGGCCATCTGA+AGG | - | chr1_4:58580527-58580546 | None:intergenic | 50.0% | |
| CCCGATTTCAAGAATACGGG+AGG | + | chr1_4:58580535-58580554 | Msa0173340:CDS | 50.0% | |
| TATGCAGACTACCCTTCCTG+TGG | + | chr1_4:58580976-58580995 | Msa0173340:intron | 50.0% | |
| ACCAAGACCTTGGCAACGAA+AGG | + | chr1_4:58581007-58581026 | Msa0173340:CDS | 50.0% | |
| ACCTTTCGTTGCCAAGGTCT+TGG | - | chr1_4:58581011-58581030 | None:intergenic | 50.0% | |
| CTGAGGCAAGCTGACATCTT+AGG | + | chr1_4:58581384-58581403 | Msa0173340:three_prime_UTR | 50.0% | |
| GCGGTCAACTGACGCTGATA+TGG | + | chr1_4:58579281-58579300 | Msa0173340:intron | 55.0% | |
| GCACGTCTGCGACCACAATT+TGG | - | chr1_4:58579403-58579422 | None:intergenic | 55.0% | |
| CGGGCCATCTGAAGGAACAA+TGG | - | chr1_4:58580519-58580538 | None:intergenic | 55.0% | |
| CGGGAGGTAAATTGGATCGC+TGG | + | chr1_4:58580551-58580570 | Msa0173340:intron | 55.0% | |
| GGTCATCTGCTCCACAGGAA+GGG | - | chr1_4:58580990-58581009 | None:intergenic | 55.0% | |
| TGGTCATCTGCTCCACAGGA+AGG | - | chr1_4:58580991-58581010 | None:intergenic | 55.0% | |
| GTCTTGGTCATCTGCTCCAC+AGG | - | chr1_4:58580995-58581014 | None:intergenic | 55.0% | |
| GGAGCAGATGACCAAGACCT+TGG | + | chr1_4:58580997-58581016 | Msa0173340:CDS | 55.0% | |
| ! | CTTCGGTTCGCGGAGCAGAA+CGG | + | chr1_4:58581094-58581113 | Msa0173340:CDS | 60.0% |
| CGGACCCCATCTGCGGATGA+TGG | - | chr1_4:58579656-58579675 | None:intergenic | 65.0% | |
| CATCCGCAGATGGGGTCCGA+AGG | + | chr1_4:58579657-58579676 | Msa0173340:exon | 65.0% | |
| GGACCTTCGGACCCCATCTG+CGG | - | chr1_4:58579663-58579682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58578607 | 58581607 | 58578607 | ID=Msa0173340;Name=Msa0173340 |
| chr1_4 | mRNA | 58578607 | 58581607 | 58578607 | ID=Msa0173340-mRNA-1;Parent=Msa0173340;Name=Msa0173340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=186|1|1|1|0.75|0.6|5|370|226 |
| chr1_4 | exon | 58578607 | 58578733 | 58578607 | ID=Msa0173340-mRNA-1:exon:18168;Parent=Msa0173340-mRNA-1 |
| chr1_4 | exon | 58579607 | 58579938 | 58579607 | ID=Msa0173340-mRNA-1:exon:18169;Parent=Msa0173340-mRNA-1 |
| chr1_4 | exon | 58580315 | 58580419 | 58580315 | ID=Msa0173340-mRNA-1:exon:18170;Parent=Msa0173340-mRNA-1 |
| chr1_4 | exon | 58580509 | 58580556 | 58580509 | ID=Msa0173340-mRNA-1:exon:18171;Parent=Msa0173340-mRNA-1 |
| chr1_4 | exon | 58580983 | 58581607 | 58580983 | ID=Msa0173340-mRNA-1:exon:18172;Parent=Msa0173340-mRNA-1 |
| chr1_4 | five_prime_UTR | 58578607 | 58578733 | 58578607 | ID=Msa0173340-mRNA-1:five_prime_utr;Parent=Msa0173340-mRNA-1 |
| chr1_4 | five_prime_UTR | 58579607 | 58579665 | 58579607 | ID=Msa0173340-mRNA-1:five_prime_utr;Parent=Msa0173340-mRNA-1 |
| chr1_4 | CDS | 58579666 | 58579938 | 58579666 | ID=Msa0173340-mRNA-1:cds;Parent=Msa0173340-mRNA-1 |
| chr1_4 | CDS | 58580315 | 58580419 | 58580315 | ID=Msa0173340-mRNA-1:cds;Parent=Msa0173340-mRNA-1 |
| chr1_4 | CDS | 58580509 | 58580556 | 58580509 | ID=Msa0173340-mRNA-1:cds;Parent=Msa0173340-mRNA-1 |
| chr1_4 | CDS | 58580983 | 58581237 | 58580983 | ID=Msa0173340-mRNA-1:cds;Parent=Msa0173340-mRNA-1 |
| chr1_4 | three_prime_UTR | 58581238 | 58581607 | 58581238 | ID=Msa0173340-mRNA-1:three_prime_utr;Parent=Msa0173340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
