Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116440 | XP_003591235.1 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 1.07e-166 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116440 | sp|O73944|PCP_PYRFU | 32.796 | 186 | 103 | 6 | 13 | 196 | 3 | 168 | 1.07e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116440 | G7IAA5 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 5.12e-167 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116440 | Msa0116480 | 0.872044 | 4.301460e-67 | -8.615850e-47 |
| Msa0116440 | Msa0121300 | 0.810149 | 1.330658e-50 | -8.615850e-47 |
| Msa0116440 | Msa0173340 | 0.884549 | 1.743528e-71 | -8.615850e-47 |
| Msa0116440 | Msa0345050 | 0.805064 | 1.598874e-49 | -8.615850e-47 |
| Msa0116440 | Msa0374470 | 0.819061 | 1.415235e-52 | -8.615850e-47 |
| Msa0116440 | Msa0374600 | 0.818851 | 1.579860e-52 | -8.615850e-47 |
| Msa0116440 | Msa0460600 | 0.806881 | 6.631401e-50 | -8.615850e-47 |
| Msa0116440 | Msa0470420 | 0.808482 | 3.031453e-50 | -8.615850e-47 |
| Msa0116440 | Msa1007900 | 0.820378 | 7.081391e-53 | -8.615850e-47 |
| Msa0116440 | Msa1099650 | 0.802992 | 4.312247e-49 | -8.615850e-47 |
| Msa0116440 | Msa1103450 | 0.800374 | 1.485379e-48 | -8.615850e-47 |
| Msa0116440 | Msa1108560 | 0.800314 | 1.527703e-48 | -8.615850e-47 |
| Msa0116440 | Msa1136630 | 0.806862 | 6.695101e-50 | -8.615850e-47 |
| Msa0116440 | Msa1136690 | 0.803623 | 3.191907e-49 | -8.615850e-47 |
| Msa0116440 | Msa1160540 | 0.804172 | 2.454469e-49 | -8.615850e-47 |
| Msa0116440 | Msa1263110 | 0.800587 | 1.344062e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116440 | MtrunA17_Chr1g0193061 | 98.673 | 226 | 3 | 0 | 1 | 226 | 1 | 226 | 9.86e-171 | 468 |
| Msa0116440 | MtrunA17_Chr8g0365921 | 65.455 | 220 | 71 | 3 | 1 | 219 | 1 | 216 | 1.48e-104 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116440 | AT1G56700.1 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0116440 | AT1G56700.2 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0116440 | AT1G56700.4 | 70.000 | 220 | 63 | 2 | 1 | 220 | 1 | 217 | 7.32e-117 | 332 |
| Msa0116440 | AT1G23440.1 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.48e-106 | 306 |
| Msa0116440 | AT1G23440.3 | 64.220 | 218 | 74 | 2 | 1 | 218 | 1 | 214 | 1.48e-106 | 306 |
| Msa0116440 | AT1G56700.3 | 69.841 | 189 | 56 | 1 | 32 | 220 | 1 | 188 | 4.45e-100 | 289 |
| Msa0116440 | AT1G23440.2 | 53.191 | 94 | 40 | 2 | 1 | 94 | 1 | 90 | 6.56e-30 | 107 |
Find 80 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTCCAATAAAATTATC+TGG | 0.221027 | 1_3:+35452425 | Msa0116440:CDS |
| ATGTTTGTTCAGCTGCATTT+TGG | 0.221330 | 1_3:+35452812 | Msa0116440:intron |
| ATTGTCTTCATTCCATTTCC+TGG | 0.292689 | 1_3:+35451221 | Msa0116440:five_prime_UTR |
| ATTTGCTGCTTCCTTATTAG+AGG | 0.294466 | 1_3:+35453777 | Msa0116440:CDS |
| ACCTCCCGTATTCTTGAAAT+CGG | 0.310925 | 1_3:-35453145 | None:intergenic |
| CTTCCGTTGCCCTGATGAAA+TGG | 0.315906 | 1_3:+35452892 | Msa0116440:CDS |
| AGGAAGCAGCAAATTGCATT+TGG | 0.316795 | 1_3:-35453768 | None:intergenic |
| ATTAGCAAGTACCTCTAATA+AGG | 0.317751 | 1_3:-35453788 | None:intergenic |
| GTAACAACAGTTTATATAAC+AGG | 0.332893 | 1_3:+35452202 | Msa0116440:CDS |
| GGCTTCCATCCCATTTCATC+AGG | 0.344197 | 1_3:-35452902 | None:intergenic |
| CTGAGGCAAGCTGACATCTT+AGG | 0.349819 | 1_3:+35453981 | Msa0116440:three_prime_UTR |
| TCCTATTCCTTACCAGGAAA+TGG | 0.372630 | 1_3:-35451233 | None:intergenic |
| AATAAGATATTGTTATGAAA+TGG | 0.383641 | 1_3:+35453918 | Msa0116440:three_prime_UTR |
| CCCAGCTCATGTAATTGTTC+TGG | 0.386886 | 1_3:+35453821 | Msa0116440:exon |
| AATTTATAACATTTCATTCA+AGG | 0.392637 | 1_3:-35453878 | None:intergenic |
| TGCCAAAGGGTTTAGCTATC+GGG | 0.396835 | 1_3:+35452308 | Msa0116440:CDS |
| TTCAGATTCCTTGGCAATAA+CGG | 0.399064 | 1_3:-35452398 | None:intergenic |
| CTATCATTCTCTTCGGTTCG+CGG | 0.401359 | 1_3:+35453681 | Msa0116440:CDS |
| ACCTTTCGTTGCCAAGGTCT+TGG | 0.402676 | 1_3:-35453605 | None:intergenic |
| GGAAGCAGCAAATTGCATTT+GGG | 0.414368 | 1_3:-35453767 | None:intergenic |
| ATGTTTACTATCATTCTCTT+CGG | 0.426824 | 1_3:+35453674 | Msa0116440:CDS |
| ACCAGAACAATTACATGAGC+TGG | 0.432033 | 1_3:-35453822 | None:intergenic |
| CGGACCCCATCTGCGGATGA+TGG | 0.434904 | 1_3:-35452162 | None:intergenic |
| ACTTGAAGATTCAGATTCCT+TGG | 0.436551 | 1_3:-35452407 | None:intergenic |
| TTGCCAAAGGGTTTAGCTAT+CGG | 0.445632 | 1_3:+35452307 | Msa0116440:CDS |
| TTATTCACAATTGTCTCCGT+TGG | 0.459045 | 1_3:-35452256 | None:intergenic |
| GTCTTGGTCATCTGCTCCAC+AGG | 0.464244 | 1_3:-35453589 | None:intergenic |
| ATGGCCCGATTTCAAGAATA+CGG | 0.466039 | 1_3:+35453140 | Msa0116440:CDS |
| TGTTGTCATGCTTCTGAGAA+TGG | 0.469604 | 1_3:+35453844 | Msa0116440:three_prime_UTR |
| GTTCCCATTGTTCCTTCAGA+TGG | 0.480004 | 1_3:+35453121 | Msa0116440:CDS |
| GAATTTATCTGATCAAAGAA+TGG | 0.481561 | 1_3:-35454179 | None:intergenic |
| TACAGCAGCTGAAGGACCTT+CGG | 0.491990 | 1_3:-35452182 | None:intergenic |
| CCTCCCGTATTCTTGAAATC+GGG | 0.492780 | 1_3:-35453144 | None:intergenic |
| TGTAGTATTCTTGATACTGC+TGG | 0.503788 | 1_3:+35452334 | Msa0116440:CDS |
| CTCCCGATAGCTAAACCCTT+TGG | 0.506502 | 1_3:-35452310 | None:intergenic |
| TAACGGCAGATTGCAATGTC+TGG | 0.506661 | 1_3:-35452381 | None:intergenic |
| ACTCAAAGCAAATTAACTAC+TGG | 0.506768 | 1_3:-35451163 | None:intergenic |
| ATCATAACCTTTCGTTGCCA+AGG | 0.509665 | 1_3:-35453611 | None:intergenic |
| ACAGGTTTCAAGAAATTCCA+TGG | 0.515589 | 1_3:+35452220 | Msa0116440:CDS |
| TTCCGTTGCCCTGATGAAAT+GGG | 0.529742 | 1_3:+35452893 | Msa0116440:CDS |
| AAGTTCCAATAAAATTATCT+GGG | 0.531862 | 1_3:+35452426 | Msa0116440:CDS |
| CGGGCCATCTGAAGGAACAA+TGG | 0.539127 | 1_3:-35453125 | None:intergenic |
| GGGCCATCTGAAGGAACAAT+GGG | 0.541004 | 1_3:-35453124 | None:intergenic |
| GTCTCGGTAAAACTGAAAGT+TGG | 0.547702 | 1_3:+35454107 | Msa0116440:three_prime_UTR |
| TGGTCATCTGCTCCACAGGA+AGG | 0.549415 | 1_3:-35453585 | None:intergenic |
| TCATTTATTGTGAAGAAGAG+TGG | 0.550686 | 1_3:-35453739 | None:intergenic |
| ATTAGACCATCATCCGCAGA+TGG | 0.550739 | 1_3:+35452156 | Msa0116440:exon |
| CTTGAAATCGGGCCATCTGA+AGG | 0.551552 | 1_3:-35453133 | None:intergenic |
| TTGGATTCTCTGAAACTCCA+TGG | 0.559574 | 1_3:-35452237 | None:intergenic |
| ATGTCTGGTACAGCGGAACA+AGG | 0.561027 | 1_3:-35452366 | None:intergenic |
| ATCCCATTTCATCAGGGCAA+CGG | 0.562088 | 1_3:-35452895 | None:intergenic |
| GCAATCTGCCGTTATTGCCA+AGG | 0.564914 | 1_3:+35452390 | Msa0116440:CDS |
| CTTTGATCAGATAAATTCGA+GGG | 0.568130 | 1_3:+35454184 | Msa0116440:three_prime_UTR |
| GATTGCAATGTCTGGTACAG+CGG | 0.575127 | 1_3:-35452373 | None:intergenic |
| CATCCGCAGATGGGGTCCGA+AGG | 0.582064 | 1_3:+35452166 | Msa0116440:exon |
| ACCAAGACCTTGGCAACGAA+AGG | 0.585242 | 1_3:+35453604 | Msa0116440:CDS |
| ATTCTTGATACTGCTGGACA+AGG | 0.586542 | 1_3:+35452340 | Msa0116440:CDS |
| TTAGACCATCATCCGCAGAT+GGG | 0.590599 | 1_3:+35452157 | Msa0116440:exon |
| GGAGCAGATGACCAAGACCT+TGG | 0.592442 | 1_3:+35453594 | Msa0116440:CDS |
| CTTCGGTTCGCGGAGCAGAA+CGG | 0.596040 | 1_3:+35453691 | Msa0116440:CDS |
| CCAGAACAATTACATGAGCT+GGG | 0.598749 | 1_3:-35453821 | None:intergenic |
| TGGCCCGATTTCAAGAATAC+GGG | 0.601050 | 1_3:+35453141 | Msa0116440:CDS |
| TCTTTGATCAGATAAATTCG+AGG | 0.603413 | 1_3:+35454183 | Msa0116440:three_prime_UTR |
| GGGTTAACAGTGGTGCAACA+AGG | 0.614278 | 1_3:+35452834 | Msa0116440:CDS |
| GGTCATCTGCTCCACAGGAA+GGG | 0.614706 | 1_3:-35453584 | None:intergenic |
| GGACCTTCGGACCCCATCTG+CGG | 0.617904 | 1_3:-35452169 | None:intergenic |
| TGTAGCCGATAAGTATGTCT+CGG | 0.621628 | 1_3:+35454091 | Msa0116440:three_prime_UTR |
| TAGACCATCATCCGCAGATG+GGG | 0.622906 | 1_3:+35452158 | Msa0116440:exon |
| TGAAATGGGATGGAAGCCAC+AGG | 0.624135 | 1_3:+35452907 | Msa0116440:CDS |
| ACTGTTGTTACAGCAGCTGA+AGG | 0.629270 | 1_3:-35452190 | None:intergenic |
| CATTTCATCAGGGCAACGGA+AGG | 0.630663 | 1_3:-35452891 | None:intergenic |
| TATGCAGACTACCCTTCCTG+TGG | 0.633375 | 1_3:+35453573 | Msa0116440:intron |
| GCTTCCATCCCATTTCATCA+GGG | 0.640372 | 1_3:-35452901 | None:intergenic |
| GTTGCCCTGATGAAATGGGA+TGG | 0.648441 | 1_3:+35452897 | Msa0116440:CDS |
| TGTCTGGTACAGCGGAACAA+GGG | 0.649049 | 1_3:-35452365 | None:intergenic |
| CCCGATTTCAAGAATACGGG+AGG | 0.650919 | 1_3:+35453144 | Msa0116440:CDS |
| TGACATCTGATGATGCAGGA+AGG | 0.659977 | 1_3:+35453638 | Msa0116440:CDS |
| GTAATGACATCTGATGATGC+AGG | 0.664436 | 1_3:+35453634 | Msa0116440:CDS |
| AGAACGTCAAGCTGTCAATG+AGG | 0.679006 | 1_3:+35452865 | Msa0116440:CDS |
| TGGAGTTTCAGAGAATCCAA+CGG | 0.696242 | 1_3:+35452240 | Msa0116440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATATGATAATATAATTA+TGG | + | chr1_3:35452634-35452653 | Msa0116440:intron | 10.0% |
| !! | TATATTATCATATCTAAACA+AGG | - | chr1_3:35452630-35452649 | None:intergenic | 15.0% |
| !! | AATTTATAACATTTCATTCA+AGG | - | chr1_3:35453881-35453900 | None:intergenic | 15.0% |
| !! | AATAAGATATTGTTATGAAA+TGG | + | chr1_3:35453918-35453937 | Msa0116440:three_prime_UTR | 15.0% |
| !! | TTATGAAATGGAAATAAAAA+TGG | + | chr1_3:35453930-35453949 | Msa0116440:three_prime_UTR | 15.0% |
| !!! | CTTTTGTTTCTAAATCTAAT+CGG | + | chr1_3:35451132-35451151 | Msa0116440:five_prime_UTR | 20.0% |
| !!! | ACATAATCTTGCAAATTTTA+AGG | - | chr1_3:35451529-35451548 | None:intergenic | 20.0% |
| !! | TTCAACATGAAAACATAATT+GGG | - | chr1_3:35451557-35451576 | None:intergenic | 20.0% |
| !! | ATTCAACATGAAAACATAAT+TGG | - | chr1_3:35451558-35451577 | None:intergenic | 20.0% |
| !!! | GTATTTTTAAGTGATGATTT+TGG | + | chr1_3:35451992-35452011 | Msa0116440:intron | 20.0% |
| !! | AAGTTCCAATAAAATTATCT+GGG | + | chr1_3:35452426-35452445 | Msa0116440:CDS | 20.0% |
| !! | TACATAAATAAAACTTCAGA+AGG | - | chr1_3:35452525-35452544 | None:intergenic | 20.0% |
| !!! | TTTCTGCAATAAAAGTTTTA+TGG | - | chr1_3:35453101-35453120 | None:intergenic | 20.0% |
| !! | ATACAAATATGAAAATGTTG+AGG | + | chr1_3:35453229-35453248 | Msa0116440:intron | 20.0% |
| !!! | AGTAATTTACAGTGTTTTTT+CGG | + | chr1_3:35454131-35454150 | Msa0116440:three_prime_UTR | 20.0% |
| !!! | ATGTTTTTTTTCTTCTTCTG+AGG | - | chr1_3:35451323-35451342 | None:intergenic | 25.0% |
| !! | TTATGTTCTTTTGTATTTCG+AGG | + | chr1_3:35451358-35451377 | Msa0116440:intron | 25.0% |
| !!! | GTTGTTAAGATTTTAAGTTG+TGG | + | chr1_3:35451725-35451744 | Msa0116440:intron | 25.0% |
| !!! | TAAGATTTTAAGTTGTGGTT+TGG | + | chr1_3:35451730-35451749 | Msa0116440:intron | 25.0% |
| !! | TGTTTCTGTATATGATGATA+TGG | + | chr1_3:35452027-35452046 | Msa0116440:intron | 25.0% |
| !!! | TTTTACTTGTCATTTAATGC+AGG | + | chr1_3:35452094-35452113 | Msa0116440:intron | 25.0% |
| ! | GTAACAACAGTTTATATAAC+AGG | + | chr1_3:35452202-35452221 | Msa0116440:CDS | 25.0% |
| ! | ACAGAATATGTGAAAAAGAA+GGG | + | chr1_3:35452283-35452302 | Msa0116440:CDS | 25.0% |
| ! | CAAGTTCCAATAAAATTATC+TGG | + | chr1_3:35452425-35452444 | Msa0116440:CDS | 25.0% |
| ! | ATCATATCTAAACAAGGATA+CGG | - | chr1_3:35452624-35452643 | None:intergenic | 25.0% |
| ! | TTAGCATAGAACTGAAATAA+TGG | + | chr1_3:35452712-35452731 | Msa0116440:intron | 25.0% |
| ! | TTATCATGAATCTTATGTTC+TGG | + | chr1_3:35452787-35452806 | Msa0116440:intron | 25.0% |
| !! | CTGTTCTTTAAATATTTCTG+AGG | - | chr1_3:35453284-35453303 | None:intergenic | 25.0% |
| ! | TTGTGAAATGATACTTAGAA+TGG | - | chr1_3:35453311-35453330 | None:intergenic | 25.0% |
| !!! | AATTATTTTTTGCCTCTTGA+TGG | + | chr1_3:35453405-35453424 | Msa0116440:intron | 25.0% |
| ! | ATGTTTACTATCATTCTCTT+CGG | + | chr1_3:35453674-35453693 | Msa0116440:CDS | 25.0% |
| ! | GAATTTATCTGATCAAAGAA+TGG | - | chr1_3:35454182-35454201 | None:intergenic | 25.0% |
| ACTCAAAGCAAATTAACTAC+TGG | - | chr1_3:35451166-35451185 | None:intergenic | 30.0% | |
| TCATGTTGAATACTGTCATT+AGG | + | chr1_3:35451567-35451586 | Msa0116440:intron | 30.0% | |
| !!! | TTTTGAGTTCTTGAGTGAAA+TGG | + | chr1_3:35451621-35451640 | Msa0116440:intron | 30.0% |
| TGCACTATGATGCTTAATAT+TGG | + | chr1_3:35451759-35451778 | Msa0116440:intron | 30.0% | |
| GACAGAATATGTGAAAAAGA+AGG | + | chr1_3:35452282-35452301 | Msa0116440:CDS | 30.0% | |
| ! | ACTCACCCAGATAATTTTAT+TGG | - | chr1_3:35452434-35452453 | None:intergenic | 30.0% |
| ! | AATGGTAAGAAAGTTCTAGT+TGG | + | chr1_3:35452730-35452749 | Msa0116440:intron | 30.0% |
| ATGAAAACAAGTTTAACCTG+TGG | - | chr1_3:35452926-35452945 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATCAACCCTTTT+AGG | + | chr1_3:35452936-35452955 | Msa0116440:intron | 30.0% |
| ! | TTTTATGGAACTGTCACTAA+AGG | - | chr1_3:35453086-35453105 | None:intergenic | 30.0% |
| ! | TTCATTTTCAAAAACTTGCG+AGG | + | chr1_3:35453374-35453393 | Msa0116440:intron | 30.0% |
| AAAACATGGAACAGTCATTA+AGG | - | chr1_3:35453506-35453525 | None:intergenic | 30.0% | |
| TTAGGACAAAAGACAAAGTT+AGG | - | chr1_3:35453550-35453569 | None:intergenic | 30.0% | |
| TCATTTATTGTGAAGAAGAG+TGG | - | chr1_3:35453742-35453761 | None:intergenic | 30.0% | |
| ATTAGCAAGTACCTCTAATA+AGG | - | chr1_3:35453791-35453810 | None:intergenic | 30.0% | |
| ! | TTTTACCGAGACATACTTAT+CGG | - | chr1_3:35454099-35454118 | None:intergenic | 30.0% |
| TCTTTGATCAGATAAATTCG+AGG | + | chr1_3:35454183-35454202 | Msa0116440:three_prime_UTR | 30.0% | |
| CTTTGATCAGATAAATTCGA+GGG | + | chr1_3:35454184-35454203 | Msa0116440:three_prime_UTR | 30.0% | |
| ATTGTCTTCATTCCATTTCC+TGG | + | chr1_3:35451221-35451240 | Msa0116440:five_prime_UTR | 35.0% | |
| AATCAATCCTATTCCTTACC+AGG | - | chr1_3:35451242-35451261 | None:intergenic | 35.0% | |
| TTCCTTGTTCCTTCATCATT+TGG | + | chr1_3:35451390-35451409 | Msa0116440:intron | 35.0% | |
| AACCAAATGATGAAGGAACA+AGG | - | chr1_3:35451395-35451414 | None:intergenic | 35.0% | |
| AATACTGTCATTAGGATGTC+AGG | + | chr1_3:35451575-35451594 | Msa0116440:intron | 35.0% | |
| ATACTGTCATTAGGATGTCA+GGG | + | chr1_3:35451576-35451595 | Msa0116440:intron | 35.0% | |
| CTTAATATTGGTGAGAATCG+CGG | + | chr1_3:35451771-35451790 | Msa0116440:intron | 35.0% | |
| CAACAATTGTGATCATGTTG+TGG | + | chr1_3:35451820-35451839 | Msa0116440:intron | 35.0% | |
| AATTGGATCACAATTGTTGC+AGG | + | chr1_3:35451852-35451871 | Msa0116440:intron | 35.0% | |
| ATTGGATCACAATTGTTGCA+GGG | + | chr1_3:35451853-35451872 | Msa0116440:intron | 35.0% | |
| ! | CAAAGTTTGATAGCATGATG+TGG | + | chr1_3:35451961-35451980 | Msa0116440:intron | 35.0% |
| TATATGATGATATGGTCCAC+TGG | + | chr1_3:35452035-35452054 | Msa0116440:intron | 35.0% | |
| ACAGGTTTCAAGAAATTCCA+TGG | + | chr1_3:35452220-35452239 | Msa0116440:CDS | 35.0% | |
| TTATTCACAATTGTCTCCGT+TGG | - | chr1_3:35452259-35452278 | None:intergenic | 35.0% | |
| AAAAAGAAGGGTTTGCCAAA+GGG | + | chr1_3:35452295-35452314 | Msa0116440:CDS | 35.0% | |
| TGTAGTATTCTTGATACTGC+TGG | + | chr1_3:35452334-35452353 | Msa0116440:CDS | 35.0% | |
| TTCAGATTCCTTGGCAATAA+CGG | - | chr1_3:35452401-35452420 | None:intergenic | 35.0% | |
| ACTTGAAGATTCAGATTCCT+TGG | - | chr1_3:35452410-35452429 | None:intergenic | 35.0% | |
| CTACACACAAAGTATGACTA+AGG | - | chr1_3:35452488-35452507 | None:intergenic | 35.0% | |
| CTTAGTCATACTTTGTGTGT+AGG | + | chr1_3:35452486-35452505 | Msa0116440:intron | 35.0% | |
| AAGATCACTGGAATTTGACA+TGG | + | chr1_3:35452672-35452691 | Msa0116440:intron | 35.0% | |
| ! | ATGTTTGTTCAGCTGCATTT+TGG | + | chr1_3:35452812-35452831 | Msa0116440:intron | 35.0% |
| ! | TGTTTGTTCAGCTGCATTTT+GGG | + | chr1_3:35452813-35452832 | Msa0116440:intron | 35.0% |
| ! | TTTTCGATTATCTGAGTCCT+TGG | + | chr1_3:35453333-35453352 | Msa0116440:intron | 35.0% |
| ! | CACAAAGTTTCTAGATACCA+AGG | - | chr1_3:35453353-35453372 | None:intergenic | 35.0% |
| !!! | TATTTTTTGCCTCTTGATGG+AGG | + | chr1_3:35453408-35453427 | Msa0116440:intron | 35.0% |
| !!! | TGTTCCATGTTTTTGAGATG+CGG | + | chr1_3:35453513-35453532 | Msa0116440:intron | 35.0% |
| ! | ATTTGCTGCTTCCTTATTAG+AGG | + | chr1_3:35453777-35453796 | Msa0116440:CDS | 35.0% |
| ! | TTTTAGCCCTTAAAATGCTG+AGG | + | chr1_3:35453964-35453983 | Msa0116440:three_prime_UTR | 35.0% |
| !! | TTTTCGGTTTGATGCTCAAT+AGG | + | chr1_3:35454147-35454166 | Msa0116440:three_prime_UTR | 35.0% |
| CTTCATTCCATTTCCTGGTA+AGG | + | chr1_3:35451226-35451245 | Msa0116440:intron | 40.0% | |
| TCCATTTCCTGGTAAGGAAT+AGG | + | chr1_3:35451232-35451251 | Msa0116440:intron | 40.0% | |
| TCCTATTCCTTACCAGGAAA+TGG | - | chr1_3:35451236-35451255 | None:intergenic | 40.0% | |
| ATCACGCAACCAAATGATGA+AGG | - | chr1_3:35451402-35451421 | None:intergenic | 40.0% | |
| CTTTGTGTCATCGTTGAAAC+TGG | + | chr1_3:35451477-35451496 | Msa0116440:intron | 40.0% | |
| GATGTCAGGGATTGCAAAAT+TGG | + | chr1_3:35451589-35451608 | Msa0116440:intron | 40.0% | |
| TGTTGTGGTGATATCGCAAT+TGG | + | chr1_3:35451835-35451854 | Msa0116440:intron | 40.0% | |
| TGAGATCGTGGTCTAAATTG+TGG | + | chr1_3:35451897-35451916 | Msa0116440:intron | 40.0% | |
| ATATGGTCCACTGGATAAGA+AGG | + | chr1_3:35452044-35452063 | Msa0116440:intron | 40.0% | |
| AACCAAACCTTCTTATCCAG+TGG | - | chr1_3:35452054-35452073 | None:intergenic | 40.0% | |
| !! | TTGGATTCTCTGAAACTCCA+TGG | - | chr1_3:35452240-35452259 | None:intergenic | 40.0% |
| TGGAGTTTCAGAGAATCCAA+CGG | + | chr1_3:35452240-35452259 | Msa0116440:CDS | 40.0% | |
| GAAAAAGAAGGGTTTGCCAA+AGG | + | chr1_3:35452294-35452313 | Msa0116440:CDS | 40.0% | |
| TTGCCAAAGGGTTTAGCTAT+CGG | + | chr1_3:35452307-35452326 | Msa0116440:CDS | 40.0% | |
| ATTCTTGATACTGCTGGACA+AGG | + | chr1_3:35452340-35452359 | Msa0116440:CDS | 40.0% | |
| TAACTGCGACTAAAGATCAC+TGG | + | chr1_3:35452660-35452679 | Msa0116440:intron | 40.0% | |
| ! | GTTTGTTCAGCTGCATTTTG+GGG | + | chr1_3:35452814-35452833 | Msa0116440:intron | 40.0% |
| ATGGCCCGATTTCAAGAATA+CGG | + | chr1_3:35453140-35453159 | Msa0116440:CDS | 40.0% | |
| ACCTCCCGTATTCTTGAAAT+CGG | - | chr1_3:35453148-35453167 | None:intergenic | 40.0% | |
| CAAGAATACGGGAGGTAAAT+TGG | + | chr1_3:35453152-35453171 | Msa0116440:intron | 40.0% | |
| AGGTGCAAGTGCAAAGATAT+TGG | + | chr1_3:35453437-35453456 | Msa0116440:intron | 40.0% | |
| ACAACCGCATCTCAAAAACA+TGG | - | chr1_3:35453520-35453539 | None:intergenic | 40.0% | |
| AGGGTAGTCTGCATAAAGTT+AGG | - | chr1_3:35453568-35453587 | None:intergenic | 40.0% | |
| ATCATAACCTTTCGTTGCCA+AGG | - | chr1_3:35453614-35453633 | None:intergenic | 40.0% | |
| ! | GTAATGACATCTGATGATGC+AGG | + | chr1_3:35453634-35453653 | Msa0116440:CDS | 40.0% |
| GGAAGCAGCAAATTGCATTT+GGG | - | chr1_3:35453770-35453789 | None:intergenic | 40.0% | |
| AGGAAGCAGCAAATTGCATT+TGG | - | chr1_3:35453771-35453790 | None:intergenic | 40.0% | |
| CCAGAACAATTACATGAGCT+GGG | - | chr1_3:35453824-35453843 | None:intergenic | 40.0% | |
| ACCAGAACAATTACATGAGC+TGG | - | chr1_3:35453825-35453844 | None:intergenic | 40.0% | |
| ! | TGTTGTCATGCTTCTGAGAA+TGG | + | chr1_3:35453844-35453863 | Msa0116440:three_prime_UTR | 40.0% |
| ! | AGCTTGCCTCAGCATTTTAA+GGG | - | chr1_3:35453973-35453992 | None:intergenic | 40.0% |
| TGTAGCCGATAAGTATGTCT+CGG | + | chr1_3:35454091-35454110 | Msa0116440:three_prime_UTR | 40.0% | |
| GTCTCGGTAAAACTGAAAGT+TGG | + | chr1_3:35454107-35454126 | Msa0116440:three_prime_UTR | 40.0% | |
| !! | GTTTTGATGCGATGAGATCG+TGG | + | chr1_3:35451885-35451904 | Msa0116440:intron | 45.0% |
| GTCCACTGGATAAGAAGGTT+TGG | + | chr1_3:35452049-35452068 | Msa0116440:intron | 45.0% | |
| ATTAGACCATCATCCGCAGA+TGG | + | chr1_3:35452156-35452175 | Msa0116440:exon | 45.0% | |
| TTAGACCATCATCCGCAGAT+GGG | + | chr1_3:35452157-35452176 | Msa0116440:exon | 45.0% | |
| ACTGTTGTTACAGCAGCTGA+AGG | - | chr1_3:35452193-35452212 | None:intergenic | 45.0% | |
| TGCCAAAGGGTTTAGCTATC+GGG | + | chr1_3:35452308-35452327 | Msa0116440:CDS | 45.0% | |
| GATTGCAATGTCTGGTACAG+CGG | - | chr1_3:35452376-35452395 | None:intergenic | 45.0% | |
| TAACGGCAGATTGCAATGTC+TGG | - | chr1_3:35452384-35452403 | None:intergenic | 45.0% | |
| ATTATCTGGGTGAGTTGCCA+AGG | + | chr1_3:35452439-35452458 | Msa0116440:intron | 45.0% | |
| ACTCACAAAGTAGGGATCCT+TGG | - | chr1_3:35452459-35452478 | None:intergenic | 45.0% | |
| AGGATCCCTACTTTGTGAGT+AGG | + | chr1_3:35452459-35452478 | Msa0116440:intron | 45.0% | |
| GGATCCCTACTTTGTGAGTA+GGG | + | chr1_3:35452460-35452479 | Msa0116440:intron | 45.0% | |
| !!! | CTGCATTTTGGGGTTAACAG+TGG | + | chr1_3:35452824-35452843 | Msa0116440:CDS | 45.0% |
| AGAACGTCAAGCTGTCAATG+AGG | + | chr1_3:35452865-35452884 | Msa0116440:CDS | 45.0% | |
| TTCCGTTGCCCTGATGAAAT+GGG | + | chr1_3:35452893-35452912 | Msa0116440:CDS | 45.0% | |
| ATCCCATTTCATCAGGGCAA+CGG | - | chr1_3:35452898-35452917 | None:intergenic | 45.0% | |
| GCTTCCATCCCATTTCATCA+GGG | - | chr1_3:35452904-35452923 | None:intergenic | 45.0% | |
| GTTCCCATTGTTCCTTCAGA+TGG | + | chr1_3:35453121-35453140 | Msa0116440:CDS | 45.0% | |
| TGGCCCGATTTCAAGAATAC+GGG | + | chr1_3:35453141-35453160 | Msa0116440:CDS | 45.0% | |
| CCTCCCGTATTCTTGAAATC+GGG | - | chr1_3:35453147-35453166 | None:intergenic | 45.0% | |
| CCTTATATGCCTCCATCAAG+AGG | - | chr1_3:35453420-35453439 | None:intergenic | 45.0% | |
| ! | CCTCTTGATGGAGGCATATA+AGG | + | chr1_3:35453417-35453436 | Msa0116440:intron | 45.0% |
| ! | TGACATCTGATGATGCAGGA+AGG | + | chr1_3:35453638-35453657 | Msa0116440:CDS | 45.0% |
| ! | CTATCATTCTCTTCGGTTCG+CGG | + | chr1_3:35453681-35453700 | Msa0116440:CDS | 45.0% |
| CCCAGCTCATGTAATTGTTC+TGG | + | chr1_3:35453821-35453840 | Msa0116440:exon | 45.0% | |
| ! | CAGCTTGCCTCAGCATTTTA+AGG | - | chr1_3:35453974-35453993 | None:intergenic | 45.0% |
| !!! | TTTTATAATATCATTTATTT+TGG | + | chr1_3:35453256-35453275 | Msa0116440:intron | 5.0% |
| CGGTCAACTGACGCTGATAT+GGG | + | chr1_3:35451791-35451810 | Msa0116440:intron | 50.0% | |
| TAGACCATCATCCGCAGATG+GGG | + | chr1_3:35452158-35452177 | Msa0116440:exon | 50.0% | |
| TACAGCAGCTGAAGGACCTT+CGG | - | chr1_3:35452185-35452204 | None:intergenic | 50.0% | |
| CTCCCGATAGCTAAACCCTT+TGG | - | chr1_3:35452313-35452332 | None:intergenic | 50.0% | |
| TGTCTGGTACAGCGGAACAA+GGG | - | chr1_3:35452368-35452387 | None:intergenic | 50.0% | |
| ATGTCTGGTACAGCGGAACA+AGG | - | chr1_3:35452369-35452388 | None:intergenic | 50.0% | |
| GCAATCTGCCGTTATTGCCA+AGG | + | chr1_3:35452390-35452409 | Msa0116440:CDS | 50.0% | |
| GGCTCCCTACTCACAAAGTA+GGG | - | chr1_3:35452467-35452486 | None:intergenic | 50.0% | |
| AGGCTCCCTACTCACAAAGT+AGG | - | chr1_3:35452468-35452487 | None:intergenic | 50.0% | |
| GGGTTAACAGTGGTGCAACA+AGG | + | chr1_3:35452834-35452853 | Msa0116440:CDS | 50.0% | |
| CATTTCATCAGGGCAACGGA+AGG | - | chr1_3:35452894-35452913 | None:intergenic | 50.0% | |
| CTTCCGTTGCCCTGATGAAA+TGG | + | chr1_3:35452892-35452911 | Msa0116440:CDS | 50.0% | |
| GTTGCCCTGATGAAATGGGA+TGG | + | chr1_3:35452897-35452916 | Msa0116440:CDS | 50.0% | |
| GGCTTCCATCCCATTTCATC+AGG | - | chr1_3:35452905-35452924 | None:intergenic | 50.0% | |
| TGAAATGGGATGGAAGCCAC+AGG | + | chr1_3:35452907-35452926 | Msa0116440:CDS | 50.0% | |
| GGGCCATCTGAAGGAACAAT+GGG | - | chr1_3:35453127-35453146 | None:intergenic | 50.0% | |
| CTTGAAATCGGGCCATCTGA+AGG | - | chr1_3:35453136-35453155 | None:intergenic | 50.0% | |
| CCCGATTTCAAGAATACGGG+AGG | + | chr1_3:35453144-35453163 | Msa0116440:CDS | 50.0% | |
| TATGCAGACTACCCTTCCTG+TGG | + | chr1_3:35453573-35453592 | Msa0116440:intron | 50.0% | |
| ACCAAGACCTTGGCAACGAA+AGG | + | chr1_3:35453604-35453623 | Msa0116440:CDS | 50.0% | |
| ACCTTTCGTTGCCAAGGTCT+TGG | - | chr1_3:35453608-35453627 | None:intergenic | 50.0% | |
| CTGAGGCAAGCTGACATCTT+AGG | + | chr1_3:35453981-35454000 | Msa0116440:three_prime_UTR | 50.0% | |
| GCGGTCAACTGACGCTGATA+TGG | + | chr1_3:35451790-35451809 | Msa0116440:intron | 55.0% | |
| CGGGCCATCTGAAGGAACAA+TGG | - | chr1_3:35453128-35453147 | None:intergenic | 55.0% | |
| CGGGAGGTAAATTGGATCGC+TGG | + | chr1_3:35453160-35453179 | Msa0116440:intron | 55.0% | |
| GGTCATCTGCTCCACAGGAA+GGG | - | chr1_3:35453587-35453606 | None:intergenic | 55.0% | |
| TGGTCATCTGCTCCACAGGA+AGG | - | chr1_3:35453588-35453607 | None:intergenic | 55.0% | |
| GTCTTGGTCATCTGCTCCAC+AGG | - | chr1_3:35453592-35453611 | None:intergenic | 55.0% | |
| GGAGCAGATGACCAAGACCT+TGG | + | chr1_3:35453594-35453613 | Msa0116440:CDS | 55.0% | |
| ! | CTTCGGTTCGCGGAGCAGAA+CGG | + | chr1_3:35453691-35453710 | Msa0116440:CDS | 60.0% |
| CGGACCCCATCTGCGGATGA+TGG | - | chr1_3:35452165-35452184 | None:intergenic | 65.0% | |
| CATCCGCAGATGGGGTCCGA+AGG | + | chr1_3:35452166-35452185 | Msa0116440:exon | 65.0% | |
| GGACCTTCGGACCCCATCTG+CGG | - | chr1_3:35452172-35452191 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35451116 | 35454217 | 35451116 | ID=Msa0116440;Name=Msa0116440 |
| chr1_3 | mRNA | 35451116 | 35454217 | 35451116 | ID=Msa0116440-mRNA-1;Parent=Msa0116440;Name=Msa0116440-mRNA-1;_AED=0.11;_eAED=0.11;_QI=186|1|1|1|0.75|0.6|5|383|226 |
| chr1_3 | exon | 35451116 | 35451242 | 35451116 | ID=Msa0116440-mRNA-1:exon:11333;Parent=Msa0116440-mRNA-1 |
| chr1_3 | exon | 35452116 | 35452447 | 35452116 | ID=Msa0116440-mRNA-1:exon:11334;Parent=Msa0116440-mRNA-1 |
| chr1_3 | exon | 35452824 | 35452928 | 35452824 | ID=Msa0116440-mRNA-1:exon:11335;Parent=Msa0116440-mRNA-1 |
| chr1_3 | exon | 35453118 | 35453165 | 35453118 | ID=Msa0116440-mRNA-1:exon:11336;Parent=Msa0116440-mRNA-1 |
| chr1_3 | exon | 35453580 | 35454217 | 35453580 | ID=Msa0116440-mRNA-1:exon:11337;Parent=Msa0116440-mRNA-1 |
| chr1_3 | five_prime_UTR | 35451116 | 35451242 | 35451116 | ID=Msa0116440-mRNA-1:five_prime_utr;Parent=Msa0116440-mRNA-1 |
| chr1_3 | five_prime_UTR | 35452116 | 35452174 | 35452116 | ID=Msa0116440-mRNA-1:five_prime_utr;Parent=Msa0116440-mRNA-1 |
| chr1_3 | CDS | 35452175 | 35452447 | 35452175 | ID=Msa0116440-mRNA-1:cds;Parent=Msa0116440-mRNA-1 |
| chr1_3 | CDS | 35452824 | 35452928 | 35452824 | ID=Msa0116440-mRNA-1:cds;Parent=Msa0116440-mRNA-1 |
| chr1_3 | CDS | 35453118 | 35453165 | 35453118 | ID=Msa0116440-mRNA-1:cds;Parent=Msa0116440-mRNA-1 |
| chr1_3 | CDS | 35453580 | 35453834 | 35453580 | ID=Msa0116440-mRNA-1:cds;Parent=Msa0116440-mRNA-1 |
| chr1_3 | three_prime_UTR | 35453835 | 35454217 | 35453835 | ID=Msa0116440-mRNA-1:three_prime_utr;Parent=Msa0116440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
