Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173400 | XP_024638849.1 | 95.000 | 80 | 3 | 1 | 1 | 79 | 164 | 243 | 9.61e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173400 | A0A072VNA6 | 95.000 | 80 | 3 | 1 | 1 | 79 | 164 | 243 | 4.59e-42 | 147 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173400 | Msa0620930 | 0.853052 | 3.083712e-61 | -8.615850e-47 |
| Msa0173400 | Msa0892640 | 0.805631 | 1.216342e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173400 | MtrunA17_Chr1g0193161 | 95.000 | 80 | 3 | 1 | 1 | 79 | 164 | 243 | 8.84e-46 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGCTTCGGGGTTCAAT+TGG | 0.292379 | 1_4:-58645803 | Msa0173400:CDS |
| CTGTGATTGGGAACAAAATT+GGG | 0.320656 | 1_4:-58645670 | Msa0173400:CDS |
| CCTGTGATTGGGAACAAAAT+TGG | 0.324060 | 1_4:-58645671 | Msa0173400:CDS |
| TGTTTGCGCTTCAAAAGCTT+CGG | 0.339007 | 1_4:-58645814 | Msa0173400:CDS |
| AGAGTTGGGGCTAATGGAAT+TGG | 0.345307 | 1_4:-58645698 | Msa0173400:CDS |
| GTTTGCGCTTCAAAAGCTTC+GGG | 0.352957 | 1_4:-58645813 | Msa0173400:CDS |
| ATTAGCAGAGTTGGGGCTAA+TGG | 0.370384 | 1_4:-58645704 | Msa0173400:CDS |
| GTCCTCTCATTAGCAGAGTT+GGG | 0.371078 | 1_4:-58645712 | Msa0173400:CDS |
| GGCTTGGGTGTTTCTAGAGT+TGG | 0.405267 | 1_4:-58644549 | Msa0173400:CDS |
| GATGGAAGAATAGGGAATAA+TGG | 0.411591 | 1_4:-58645635 | Msa0173400:intron |
| ACGGAAGTGATGGAAGAATA+GGG | 0.436833 | 1_4:-58645643 | Msa0173400:CDS |
| AAAAGCTTCGGGGTTCAATT+GGG | 0.459770 | 1_4:-58645802 | Msa0173400:CDS |
| GGTCCTCTCATTAGCAGAGT+TGG | 0.474212 | 1_4:-58645713 | Msa0173400:CDS |
| AACGGAAGTGATGGAAGAAT+AGG | 0.475585 | 1_4:-58645644 | Msa0173400:CDS |
| AAGCTGCGATGGCGAGGAAG+AGG | 0.491949 | 1_4:-58645859 | None:intergenic |
| AATGCAGATAGACAAGGGCT+TGG | 0.492773 | 1_4:-58644565 | Msa0173400:intron |
| TTCTAGAGTTGGTGCTGCTG+TGG | 0.498105 | 1_4:-58644538 | Msa0173400:CDS |
| CTGCTAATGAGAGGACCATT+CGG | 0.507849 | 1_4:+58645719 | None:intergenic |
| GAGTTGGGGCTAATGGAATT+GGG | 0.512289 | 1_4:-58645697 | Msa0173400:CDS |
| GGTTCAATTGGGTTGAGTAA+TGG | 0.514286 | 1_4:-58645791 | Msa0173400:CDS |
| GGAATTGGGAGTCCTGTGAT+TGG | 0.527033 | 1_4:-58645683 | Msa0173400:CDS |
| GATGGCGAGGAAGAGGACTA+AGG | 0.539661 | 1_4:-58645852 | Msa0173400:CDS |
| ATGCAGATAGACAAGGGCTT+GGG | 0.542987 | 1_4:-58644564 | Msa0173400:intron |
| GAATTGGGAGTCCTGTGATT+GGG | 0.553852 | 1_4:-58645682 | Msa0173400:CDS |
| TTTGCGCTTCAAAAGCTTCG+GGG | 0.596596 | 1_4:-58645812 | Msa0173400:CDS |
| TCCTCTCATTAGCAGAGTTG+GGG | 0.601729 | 1_4:-58645711 | Msa0173400:CDS |
| TTAAGGAAGCTGCGATGGCG+AGG | 0.601952 | 1_4:-58645865 | None:intergenic |
| AATGCAGATAGACAAGGGCA+TGG | 0.605215 | 1_4:-58644603 | Msa0173400:intron |
| GGACATTCGCAGTCGCCGAA+TGG | 0.607627 | 1_4:-58645734 | Msa0173400:CDS |
| GAGTAATGGTAACAATGTTG+TGG | 0.607974 | 1_4:-58645777 | Msa0173400:CDS |
| TGTGATTGGGAACAAAATTG+GGG | 0.609875 | 1_4:-58645669 | Msa0173400:CDS |
| ATGCAGATAGACAAGGGCAT+GGG | 0.611416 | 1_4:-58644602 | Msa0173400:intron |
| GTTTGAATGCAGATAGACAA+GGG | 0.634045 | 1_4:-58644570 | Msa0173400:intron |
| GCCCCAACTCTGCTAATGAG+AGG | 0.639500 | 1_4:+58645710 | None:intergenic |
| GTTTGAATGCAGATAGACAA+GGG | 0.661809 | 1_4:-58644608 | Msa0173400:intron |
| GGTTTGAATGCAGATAGACA+AGG | 0.679012 | 1_4:-58644571 | Msa0173400:intron |
| GGTTTGAATGCAGATAGACA+AGG | 0.681495 | 1_4:-58644609 | Msa0173400:intron |
| GTGATTGGGAACAAAATTGG+GGG | 0.716183 | 1_4:-58645668 | Msa0173400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTAGTTTTAGTTTA+AGG | - | chr1_4:58644739-58644758 | Msa0173400:intron | 10.0% |
| !!! | TTTTTTTTCAAAAATTGTAA+AGG | - | chr1_4:58645463-58645482 | Msa0173400:intron | 10.0% |
| !!! | ATAATTTTAGTTTTAGTTTA+AGG | - | chr1_4:58644739-58644758 | Msa0173400:intron | 10.0% |
| !!! | TTTTTTTTCAAAAATTGTAA+AGG | - | chr1_4:58645463-58645482 | Msa0173400:intron | 10.0% |
| !!! | AGATATTTTAAAAAAAGAGA+TGG | - | chr1_4:58645240-58645259 | Msa0173400:intron | 15.0% |
| !! | CTTAAACTAAAAAACATAAA+AGG | + | chr1_4:58645520-58645539 | None:intergenic | 15.0% |
| !!! | AGATATTTTAAAAAAAGAGA+TGG | - | chr1_4:58645240-58645259 | Msa0173400:intron | 15.0% |
| !! | CTTAAACTAAAAAACATAAA+AGG | + | chr1_4:58645520-58645539 | None:intergenic | 15.0% |
| !! | TTAAATTGTTAACAAAGAGA+TGG | - | chr1_4:58644820-58644839 | Msa0173400:intron | 20.0% |
| !!! | TTTCAAAAATCCAATTTTTC+CGG | + | chr1_4:58645000-58645019 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAAAGAGATGGT+AGG | - | chr1_4:58645039-58645058 | Msa0173400:intron | 20.0% |
| !!! | TGATAGGTTTTTTTCAAAAA+AGG | - | chr1_4:58645127-58645146 | Msa0173400:intron | 20.0% |
| !!! | ATTTTAAAAAAAGAGATGGT+AGG | - | chr1_4:58645039-58645058 | Msa0173400:intron | 20.0% |
| !!! | TTTTGAAAATCCATTTTTTC+CGG | + | chr1_4:58645097-58645116 | None:intergenic | 20.0% |
| !!! | CTTTTCAAAAAAGATATGAT+AGG | - | chr1_4:58645357-58645376 | Msa0173400:intron | 20.0% |
| !! | TAAAATTGCATAATCACATT+AGG | + | chr1_4:58645834-58645853 | None:intergenic | 20.0% |
| !! | TTAAATTGTTAACAAAGAGA+TGG | - | chr1_4:58644820-58644839 | Msa0173400:intron | 20.0% |
| !!! | TTTCAAAAATCCAATTTTTC+CGG | + | chr1_4:58645000-58645019 | None:intergenic | 20.0% |
| !!! | ATTTTAAAAAAAGAGATGGT+AGG | - | chr1_4:58645039-58645058 | Msa0173400:intron | 20.0% |
| !!! | TGATAGGTTTTTTTCAAAAA+AGG | - | chr1_4:58645127-58645146 | Msa0173400:intron | 20.0% |
| !!! | ATTTTAAAAAAAGAGATGGT+AGG | - | chr1_4:58645039-58645058 | Msa0173400:intron | 20.0% |
| !!! | TTTTGAAAATCCATTTTTTC+CGG | + | chr1_4:58645097-58645116 | None:intergenic | 20.0% |
| !!! | CTTTTCAAAAAAGATATGAT+AGG | - | chr1_4:58645357-58645376 | Msa0173400:intron | 20.0% |
| !! | TAAAATTGCATAATCACATT+AGG | + | chr1_4:58645834-58645853 | None:intergenic | 20.0% |
| !!! | TGTTAAAAAGCTTTGAAACT+AGG | + | chr1_4:58644663-58644682 | None:intergenic | 25.0% |
| !!! | TTTCGAAAATCCATTTTTTC+TGG | + | chr1_4:58644893-58644912 | None:intergenic | 25.0% |
| !!! | ATGCTAGGTTTTTTCAAAAA+TGG | - | chr1_4:58644922-58644941 | Msa0173400:intron | 25.0% |
| !!! | TGCTAGGTTTTTTCAAAAAT+GGG | - | chr1_4:58644923-58644942 | Msa0173400:intron | 25.0% |
| !!! | GGGTATTTTAAAAAAAGAGA+TGG | - | chr1_4:58645035-58645054 | Msa0173400:intron | 25.0% |
| !!! | TCAAAAGTACTGAAAATGAT+AGG | - | chr1_4:58645111-58645130 | Msa0173400:intron | 25.0% |
| !!! | TCAAAAGTACTGAAAATTCT+AGG | - | chr1_4:58645326-58645345 | Msa0173400:intron | 25.0% |
| !!! | CAAAAGTACTGAAAATTCTA+GGG | - | chr1_4:58645327-58645346 | Msa0173400:intron | 25.0% |
| !!! | TTTCGAAAATCCATTTTTTC+CGG | + | chr1_4:58644893-58644912 | None:intergenic | 25.0% |
| ! | TCAAAAATTGTAAAGGAAAG+TGG | - | chr1_4:58645470-58645489 | Msa0173400:intron | 25.0% |
| ! | CAAAAATTGTAAAGGAAAGT+GGG | - | chr1_4:58645471-58645490 | Msa0173400:intron | 25.0% |
| ! | AAAAATTGTAAAGGAAAGTG+GGG | - | chr1_4:58645472-58645491 | Msa0173400:intron | 25.0% |
| !! | AAAATGAAAACTGAAAGCAT+TGG | - | chr1_4:58645542-58645561 | Msa0173400:intron | 25.0% |
| !!! | TGTGCAATTGTACTTATTTT+GGG | - | chr1_4:58645595-58645614 | Msa0173400:intron | 25.0% |
| ! | TATCATGTATAAACTACAAC+AGG | + | chr1_4:58645771-58645790 | None:intergenic | 25.0% |
| !!! | TGTTAAAAAGCTTTGAAACT+AGG | + | chr1_4:58644663-58644682 | None:intergenic | 25.0% |
| !!! | TTTCGAAAATCCATTTTTTC+TGG | + | chr1_4:58644893-58644912 | None:intergenic | 25.0% |
| !!! | ATGCTAGGTTTTTTCAAAAA+TGG | - | chr1_4:58644922-58644941 | Msa0173400:intron | 25.0% |
| !!! | TGCTAGGTTTTTTCAAAAAT+GGG | - | chr1_4:58644923-58644942 | Msa0173400:intron | 25.0% |
| !!! | GGGTATTTTAAAAAAAGAGA+TGG | - | chr1_4:58645035-58645054 | Msa0173400:intron | 25.0% |
| !!! | TCAAAAGTACTGAAAATGAT+AGG | - | chr1_4:58645111-58645130 | Msa0173400:intron | 25.0% |
| !!! | TCAAAAGTACTGAAAATTCT+AGG | - | chr1_4:58645326-58645345 | Msa0173400:intron | 25.0% |
| !!! | CAAAAGTACTGAAAATTCTA+GGG | - | chr1_4:58645327-58645346 | Msa0173400:intron | 25.0% |
| !!! | TTTCGAAAATCCATTTTTTC+CGG | + | chr1_4:58644893-58644912 | None:intergenic | 25.0% |
| ! | TCAAAAATTGTAAAGGAAAG+TGG | - | chr1_4:58645470-58645489 | Msa0173400:intron | 25.0% |
| ! | CAAAAATTGTAAAGGAAAGT+GGG | - | chr1_4:58645471-58645490 | Msa0173400:intron | 25.0% |
| ! | AAAAATTGTAAAGGAAAGTG+GGG | - | chr1_4:58645472-58645491 | Msa0173400:intron | 25.0% |
| !! | AAAATGAAAACTGAAAGCAT+TGG | - | chr1_4:58645542-58645561 | Msa0173400:intron | 25.0% |
| !!! | TGTGCAATTGTACTTATTTT+GGG | - | chr1_4:58645595-58645614 | Msa0173400:intron | 25.0% |
| ! | TATCATGTATAAACTACAAC+AGG | + | chr1_4:58645771-58645790 | None:intergenic | 25.0% |
| CAATGTTGTGGTTAAAAAAG+AGG | - | chr1_4:58644491-58644510 | Msa0173400:intron | 30.0% | |
| GTTAAAAAAGAGGAGTTGAA+TGG | - | chr1_4:58644501-58644520 | Msa0173400:intron | 30.0% | |
| !! | AATAATGGTAGTGGGAAATT+TGG | - | chr1_4:58644636-58644655 | Msa0173400:intron | 30.0% |
| !! | AGCTTTTTAACATTTGCTAG+TGG | - | chr1_4:58644671-58644690 | Msa0173400:intron | 30.0% |
| ACAACAATCGAGATTTATCA+AGG | - | chr1_4:58644699-58644718 | Msa0173400:intron | 30.0% | |
| AATCGAGATTTATCAAGGTT+AGG | - | chr1_4:58644704-58644723 | Msa0173400:intron | 30.0% | |
| ATCGAGATTTATCAAGGTTA+GGG | - | chr1_4:58644705-58644724 | Msa0173400:intron | 30.0% | |
| ATTGTTAACAAAGAGATGGT+AGG | - | chr1_4:58644824-58644843 | Msa0173400:intron | 30.0% | |
| !! | TCGAAAGTACTAAAAATGCT+AGG | - | chr1_4:58644907-58644926 | Msa0173400:intron | 30.0% |
| !!! | AGGTTTTTTCAAAAATGGGA+TGG | - | chr1_4:58644927-58644946 | Msa0173400:intron | 30.0% |
| !! | TTTTTCAAAAATGGGATGGT+AGG | - | chr1_4:58644931-58644950 | Msa0173400:intron | 30.0% |
| !! | TTGAAAGTACTGAAAATGCT+AGG | - | chr1_4:58645014-58645033 | Msa0173400:intron | 30.0% |
| !! | TGAAAGTACTGAAAATGCTA+GGG | - | chr1_4:58645015-58645034 | Msa0173400:intron | 30.0% |
| !!! | GGTTTTTTTCAAAAAAGGCA+TGG | - | chr1_4:58645132-58645151 | Msa0173400:intron | 30.0% |
| !! | TTTTTCAAAAAAGGCATGGA+AGG | - | chr1_4:58645136-58645155 | Msa0173400:intron | 30.0% |
| !! | TGAAAGCATTGGAAGTAATT+AGG | - | chr1_4:58645553-58645572 | Msa0173400:intron | 30.0% |
| ! | GTGTGCAATTGTACTTATTT+TGG | - | chr1_4:58645594-58645613 | Msa0173400:intron | 30.0% |
| !!! | GTGCAATTGTACTTATTTTG+GGG | - | chr1_4:58645596-58645615 | Msa0173400:intron | 30.0% |
| !!! | ATTAACACGTTTGTTTTGCT+TGG | - | chr1_4:58645626-58645645 | Msa0173400:intron | 30.0% |
| ATCAAATGTGTACTCTTACT+CGG | + | chr1_4:58645748-58645767 | None:intergenic | 30.0% | |
| TTAGGTCATAAGCTTTACAA+GGG | + | chr1_4:58645816-58645835 | None:intergenic | 30.0% | |
| ATTAGGTCATAAGCTTTACA+AGG | + | chr1_4:58645817-58645836 | None:intergenic | 30.0% | |
| ! | TTTTATGTACTTTAAGTGCC+CGG | - | chr1_4:58645849-58645868 | Msa0173400:CDS | 30.0% |
| CAATGTTGTGGTTAAAAAAG+AGG | - | chr1_4:58644491-58644510 | Msa0173400:intron | 30.0% | |
| GTTAAAAAAGAGGAGTTGAA+TGG | - | chr1_4:58644501-58644520 | Msa0173400:intron | 30.0% | |
| !! | AATAATGGTAGTGGGAAATT+TGG | - | chr1_4:58644636-58644655 | Msa0173400:intron | 30.0% |
| !! | AGCTTTTTAACATTTGCTAG+TGG | - | chr1_4:58644671-58644690 | Msa0173400:intron | 30.0% |
| ACAACAATCGAGATTTATCA+AGG | - | chr1_4:58644699-58644718 | Msa0173400:intron | 30.0% | |
| AATCGAGATTTATCAAGGTT+AGG | - | chr1_4:58644704-58644723 | Msa0173400:intron | 30.0% | |
| ATCGAGATTTATCAAGGTTA+GGG | - | chr1_4:58644705-58644724 | Msa0173400:intron | 30.0% | |
| ATTGTTAACAAAGAGATGGT+AGG | - | chr1_4:58644824-58644843 | Msa0173400:intron | 30.0% | |
| !! | TCGAAAGTACTAAAAATGCT+AGG | - | chr1_4:58644907-58644926 | Msa0173400:intron | 30.0% |
| !!! | AGGTTTTTTCAAAAATGGGA+TGG | - | chr1_4:58644927-58644946 | Msa0173400:intron | 30.0% |
| !! | TTTTTCAAAAATGGGATGGT+AGG | - | chr1_4:58644931-58644950 | Msa0173400:intron | 30.0% |
| !! | TTGAAAGTACTGAAAATGCT+AGG | - | chr1_4:58645014-58645033 | Msa0173400:intron | 30.0% |
| !! | TGAAAGTACTGAAAATGCTA+GGG | - | chr1_4:58645015-58645034 | Msa0173400:intron | 30.0% |
| !!! | GGTTTTTTTCAAAAAAGGCA+TGG | - | chr1_4:58645132-58645151 | Msa0173400:intron | 30.0% |
| !! | TTTTTCAAAAAAGGCATGGA+AGG | - | chr1_4:58645136-58645155 | Msa0173400:intron | 30.0% |
| !! | TGAAAGCATTGGAAGTAATT+AGG | - | chr1_4:58645553-58645572 | Msa0173400:intron | 30.0% |
| ! | GTGTGCAATTGTACTTATTT+TGG | - | chr1_4:58645594-58645613 | Msa0173400:intron | 30.0% |
| !!! | GTGCAATTGTACTTATTTTG+GGG | - | chr1_4:58645596-58645615 | Msa0173400:intron | 30.0% |
| !!! | ATTAACACGTTTGTTTTGCT+TGG | - | chr1_4:58645626-58645645 | Msa0173400:intron | 30.0% |
| ATCAAATGTGTACTCTTACT+CGG | + | chr1_4:58645748-58645767 | None:intergenic | 30.0% | |
| TTAGGTCATAAGCTTTACAA+GGG | + | chr1_4:58645816-58645835 | None:intergenic | 30.0% | |
| ATTAGGTCATAAGCTTTACA+AGG | + | chr1_4:58645817-58645836 | None:intergenic | 30.0% | |
| ! | TTTTATGTACTTTAAGTGCC+CGG | - | chr1_4:58645849-58645868 | Msa0173400:CDS | 30.0% |
| GAGTAATGGTAACAATGTTG+TGG | - | chr1_4:58644479-58644498 | Msa0173400:intron | 35.0% | |
| CTGTGATTGGGAACAAAATT+GGG | - | chr1_4:58644586-58644605 | Msa0173400:intron | 35.0% | |
| TGTGATTGGGAACAAAATTG+GGG | - | chr1_4:58644587-58644606 | Msa0173400:intron | 35.0% | |
| GATGGAAGAATAGGGAATAA+TGG | - | chr1_4:58644621-58644640 | Msa0173400:intron | 35.0% | |
| AGAATAGGGAATAATGGTAG+TGG | - | chr1_4:58644627-58644646 | Msa0173400:intron | 35.0% | |
| GAATAGGGAATAATGGTAGT+GGG | - | chr1_4:58644628-58644647 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCCAGAAAAAA+TGG | - | chr1_4:58644880-58644899 | Msa0173400:intron | 35.0% | |
| TGATGATATAGAAGACAAGC+CGG | - | chr1_4:58644978-58644997 | Msa0173400:intron | 35.0% | |
| AGATGATATAGAAGACAAGC+TGG | - | chr1_4:58644871-58644890 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCTGGAAAAAA+TGG | - | chr1_4:58645084-58645103 | Msa0173400:intron | 35.0% | |
| TGATGATATAGAAGACAAGC+TGG | - | chr1_4:58644978-58644997 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCTGGAAAAAT+TGG | - | chr1_4:58645192-58645211 | Msa0173400:intron | 35.0% | |
| GAGATATATAGAAGACAAGC+CGG | - | chr1_4:58645290-58645309 | Msa0173400:intron | 35.0% | |
| !! | TCGAAAGTACTGAAAATGCT+AGG | - | chr1_4:58645440-58645459 | Msa0173400:intron | 35.0% |
| CACACAGAAAAGGAAATTCA+GGG | + | chr1_4:58645579-58645598 | None:intergenic | 35.0% | |
| AGTACAATTGCACACAGAAA+AGG | + | chr1_4:58645589-58645608 | None:intergenic | 35.0% | |
| GTTTGAATGCAGATAGACAA+GGG | - | chr1_4:58645648-58645667 | Msa0173400:CDS | 35.0% | |
| GTTTGAATGCAGATAGACAA+GGG | - | chr1_4:58645648-58645667 | Msa0173400:CDS | 35.0% | |
| GAATGGAATGGATACATGAA+AGG | + | chr1_4:58645794-58645813 | None:intergenic | 35.0% | |
| TCATAAGCTTTACAAGGGAA+TGG | + | chr1_4:58645811-58645830 | None:intergenic | 35.0% | |
| GAGTAATGGTAACAATGTTG+TGG | - | chr1_4:58644479-58644498 | Msa0173400:intron | 35.0% | |
| CTGTGATTGGGAACAAAATT+GGG | - | chr1_4:58644586-58644605 | Msa0173400:intron | 35.0% | |
| TGTGATTGGGAACAAAATTG+GGG | - | chr1_4:58644587-58644606 | Msa0173400:intron | 35.0% | |
| GATGGAAGAATAGGGAATAA+TGG | - | chr1_4:58644621-58644640 | Msa0173400:intron | 35.0% | |
| AGAATAGGGAATAATGGTAG+TGG | - | chr1_4:58644627-58644646 | Msa0173400:intron | 35.0% | |
| GAATAGGGAATAATGGTAGT+GGG | - | chr1_4:58644628-58644647 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCCAGAAAAAA+TGG | - | chr1_4:58644880-58644899 | Msa0173400:intron | 35.0% | |
| TGATGATATAGAAGACAAGC+CGG | - | chr1_4:58644978-58644997 | Msa0173400:intron | 35.0% | |
| AGATGATATAGAAGACAAGC+TGG | - | chr1_4:58644871-58644890 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCTGGAAAAAA+TGG | - | chr1_4:58645084-58645103 | Msa0173400:intron | 35.0% | |
| TGATGATATAGAAGACAAGC+TGG | - | chr1_4:58644978-58644997 | Msa0173400:intron | 35.0% | |
| AGAAGACAAGCTGGAAAAAT+TGG | - | chr1_4:58645192-58645211 | Msa0173400:intron | 35.0% | |
| GAGATATATAGAAGACAAGC+CGG | - | chr1_4:58645290-58645309 | Msa0173400:intron | 35.0% | |
| !! | TCGAAAGTACTGAAAATGCT+AGG | - | chr1_4:58645440-58645459 | Msa0173400:intron | 35.0% |
| CACACAGAAAAGGAAATTCA+GGG | + | chr1_4:58645579-58645598 | None:intergenic | 35.0% | |
| AGTACAATTGCACACAGAAA+AGG | + | chr1_4:58645589-58645608 | None:intergenic | 35.0% | |
| GTTTGAATGCAGATAGACAA+GGG | - | chr1_4:58645648-58645667 | Msa0173400:CDS | 35.0% | |
| GTTTGAATGCAGATAGACAA+GGG | - | chr1_4:58645648-58645667 | Msa0173400:CDS | 35.0% | |
| GAATGGAATGGATACATGAA+AGG | + | chr1_4:58645794-58645813 | None:intergenic | 35.0% | |
| TCATAAGCTTTACAAGGGAA+TGG | + | chr1_4:58645811-58645830 | None:intergenic | 35.0% | |
| TGTTTGCGCTTCAAAAGCTT+CGG | - | chr1_4:58644442-58644461 | Msa0173400:intron | 40.0% | |
| AAAAGCTTCGGGGTTCAATT+GGG | - | chr1_4:58644454-58644473 | Msa0173400:intron | 40.0% | |
| !! | GGTTCAATTGGGTTGAGTAA+TGG | - | chr1_4:58644465-58644484 | Msa0173400:intron | 40.0% |
| ! | CCAATTTTGTTCCCAATCAC+AGG | + | chr1_4:58644588-58644607 | None:intergenic | 40.0% |
| CCTGTGATTGGGAACAAAAT+TGG | - | chr1_4:58644585-58644604 | Msa0173400:intron | 40.0% | |
| GTGATTGGGAACAAAATTGG+GGG | - | chr1_4:58644588-58644607 | Msa0173400:intron | 40.0% | |
| ! | AACGGAAGTGATGGAAGAAT+AGG | - | chr1_4:58644612-58644631 | Msa0173400:intron | 40.0% |
| ! | ACGGAAGTGATGGAAGAATA+GGG | - | chr1_4:58644613-58644632 | Msa0173400:intron | 40.0% |
| AGAAGACAAGCCGGAAAAAT+TGG | - | chr1_4:58644987-58645006 | Msa0173400:intron | 40.0% | |
| AAAAAAAGAGATGGTAGGCG+CGG | - | chr1_4:58645044-58645063 | Msa0173400:intron | 40.0% | |
| AGAAGACAAGCCGGAAAAAA+TGG | - | chr1_4:58645299-58645318 | Msa0173400:intron | 40.0% | |
| GCGTGTAGCTATAATTGTGA+TGG | - | chr1_4:58645381-58645400 | Msa0173400:intron | 40.0% | |
| GCACACAGAAAAGGAAATTC+AGG | + | chr1_4:58645580-58645599 | None:intergenic | 40.0% | |
| GGTTTGAATGCAGATAGACA+AGG | - | chr1_4:58645647-58645666 | Msa0173400:CDS | 40.0% | |
| GGTTTGAATGCAGATAGACA+AGG | - | chr1_4:58645647-58645666 | Msa0173400:CDS | 40.0% | |
| AGCTTTACAAGGGAATGGAA+TGG | + | chr1_4:58645806-58645825 | None:intergenic | 40.0% | |
| TGTTTGCGCTTCAAAAGCTT+CGG | - | chr1_4:58644442-58644461 | Msa0173400:intron | 40.0% | |
| AAAAGCTTCGGGGTTCAATT+GGG | - | chr1_4:58644454-58644473 | Msa0173400:intron | 40.0% | |
| !! | GGTTCAATTGGGTTGAGTAA+TGG | - | chr1_4:58644465-58644484 | Msa0173400:intron | 40.0% |
| ! | CCAATTTTGTTCCCAATCAC+AGG | + | chr1_4:58644588-58644607 | None:intergenic | 40.0% |
| CCTGTGATTGGGAACAAAAT+TGG | - | chr1_4:58644585-58644604 | Msa0173400:intron | 40.0% | |
| GTGATTGGGAACAAAATTGG+GGG | - | chr1_4:58644588-58644607 | Msa0173400:intron | 40.0% | |
| ! | AACGGAAGTGATGGAAGAAT+AGG | - | chr1_4:58644612-58644631 | Msa0173400:intron | 40.0% |
| ! | ACGGAAGTGATGGAAGAATA+GGG | - | chr1_4:58644613-58644632 | Msa0173400:intron | 40.0% |
| AGAAGACAAGCCGGAAAAAT+TGG | - | chr1_4:58644987-58645006 | Msa0173400:intron | 40.0% | |
| AAAAAAAGAGATGGTAGGCG+CGG | - | chr1_4:58645044-58645063 | Msa0173400:intron | 40.0% | |
| AGAAGACAAGCCGGAAAAAA+TGG | - | chr1_4:58645299-58645318 | Msa0173400:intron | 40.0% | |
| GCGTGTAGCTATAATTGTGA+TGG | - | chr1_4:58645381-58645400 | Msa0173400:intron | 40.0% | |
| GCACACAGAAAAGGAAATTC+AGG | + | chr1_4:58645580-58645599 | None:intergenic | 40.0% | |
| GGTTTGAATGCAGATAGACA+AGG | - | chr1_4:58645647-58645666 | Msa0173400:CDS | 40.0% | |
| GGTTTGAATGCAGATAGACA+AGG | - | chr1_4:58645647-58645666 | Msa0173400:CDS | 40.0% | |
| AGCTTTACAAGGGAATGGAA+TGG | + | chr1_4:58645806-58645825 | None:intergenic | 40.0% | |
| GTTTGCGCTTCAAAAGCTTC+GGG | - | chr1_4:58644443-58644462 | Msa0173400:intron | 45.0% | |
| TTTGCGCTTCAAAAGCTTCG+GGG | - | chr1_4:58644444-58644463 | Msa0173400:intron | 45.0% | |
| CAAAAGCTTCGGGGTTCAAT+TGG | - | chr1_4:58644453-58644472 | Msa0173400:intron | 45.0% | |
| CTGCTAATGAGAGGACCATT+CGG | + | chr1_4:58644540-58644559 | None:intergenic | 45.0% | |
| GTCCTCTCATTAGCAGAGTT+GGG | - | chr1_4:58644544-58644563 | Msa0173400:CDS | 45.0% | |
| TCCTCTCATTAGCAGAGTTG+GGG | - | chr1_4:58644545-58644564 | Msa0173400:CDS | 45.0% | |
| ATTAGCAGAGTTGGGGCTAA+TGG | - | chr1_4:58644552-58644571 | Msa0173400:CDS | 45.0% | |
| AGAGTTGGGGCTAATGGAAT+TGG | - | chr1_4:58644558-58644577 | Msa0173400:CDS | 45.0% | |
| GAGTTGGGGCTAATGGAATT+GGG | - | chr1_4:58644559-58644578 | Msa0173400:CDS | 45.0% | |
| GAATTGGGAGTCCTGTGATT+GGG | - | chr1_4:58644574-58644593 | Msa0173400:intron | 45.0% | |
| GGGAACAAAATTGGGGGTAA+CGG | - | chr1_4:58644594-58644613 | Msa0173400:CDS | 45.0% | |
| AAAAAAGAGATGGTAGGCGC+GGG | - | chr1_4:58645250-58645269 | Msa0173400:intron | 45.0% | |
| AGATGATATCGACGACAAGC+CGG | - | chr1_4:58645404-58645423 | Msa0173400:intron | 45.0% | |
| AATGCAGATAGACAAGGGCA+TGG | - | chr1_4:58645653-58645672 | Msa0173400:CDS | 45.0% | |
| ! | ATGCAGATAGACAAGGGCAT+GGG | - | chr1_4:58645654-58645673 | Msa0173400:CDS | 45.0% |
| AATGCAGATAGACAAGGGCT+TGG | - | chr1_4:58645691-58645710 | Msa0173400:CDS | 45.0% | |
| ATGCAGATAGACAAGGGCTT+GGG | - | chr1_4:58645692-58645711 | Msa0173400:CDS | 45.0% | |
| GTTTGCGCTTCAAAAGCTTC+GGG | - | chr1_4:58644443-58644462 | Msa0173400:intron | 45.0% | |
| TTTGCGCTTCAAAAGCTTCG+GGG | - | chr1_4:58644444-58644463 | Msa0173400:intron | 45.0% | |
| CAAAAGCTTCGGGGTTCAAT+TGG | - | chr1_4:58644453-58644472 | Msa0173400:intron | 45.0% | |
| CTGCTAATGAGAGGACCATT+CGG | + | chr1_4:58644540-58644559 | None:intergenic | 45.0% | |
| GTCCTCTCATTAGCAGAGTT+GGG | - | chr1_4:58644544-58644563 | Msa0173400:CDS | 45.0% | |
| TCCTCTCATTAGCAGAGTTG+GGG | - | chr1_4:58644545-58644564 | Msa0173400:CDS | 45.0% | |
| ATTAGCAGAGTTGGGGCTAA+TGG | - | chr1_4:58644552-58644571 | Msa0173400:CDS | 45.0% | |
| AGAGTTGGGGCTAATGGAAT+TGG | - | chr1_4:58644558-58644577 | Msa0173400:CDS | 45.0% | |
| GAGTTGGGGCTAATGGAATT+GGG | - | chr1_4:58644559-58644578 | Msa0173400:CDS | 45.0% | |
| GAATTGGGAGTCCTGTGATT+GGG | - | chr1_4:58644574-58644593 | Msa0173400:intron | 45.0% | |
| GGGAACAAAATTGGGGGTAA+CGG | - | chr1_4:58644594-58644613 | Msa0173400:CDS | 45.0% | |
| AAAAAAGAGATGGTAGGCGC+GGG | - | chr1_4:58645250-58645269 | Msa0173400:intron | 45.0% | |
| AGATGATATCGACGACAAGC+CGG | - | chr1_4:58645404-58645423 | Msa0173400:intron | 45.0% | |
| AATGCAGATAGACAAGGGCA+TGG | - | chr1_4:58645653-58645672 | Msa0173400:CDS | 45.0% | |
| ! | ATGCAGATAGACAAGGGCAT+GGG | - | chr1_4:58645654-58645673 | Msa0173400:CDS | 45.0% |
| AATGCAGATAGACAAGGGCT+TGG | - | chr1_4:58645691-58645710 | Msa0173400:CDS | 45.0% | |
| ATGCAGATAGACAAGGGCTT+GGG | - | chr1_4:58645692-58645711 | Msa0173400:CDS | 45.0% | |
| GGTCCTCTCATTAGCAGAGT+TGG | - | chr1_4:58644543-58644562 | Msa0173400:CDS | 50.0% | |
| GGAATTGGGAGTCCTGTGAT+TGG | - | chr1_4:58644573-58644592 | Msa0173400:intron | 50.0% | |
| !! | ATTGGGGGTAACGGAAGTGA+TGG | - | chr1_4:58644603-58644622 | Msa0173400:intron | 50.0% |
| CGACGACAAGCCGGAAAAAA+TGG | - | chr1_4:58645413-58645432 | Msa0173400:intron | 50.0% | |
| !! | ACAAGGGCATGGGTTTTGCT+TGG | - | chr1_4:58645664-58645683 | Msa0173400:CDS | 50.0% |
| !! | GGCTTGGGTGTTTCTAGAGT+TGG | - | chr1_4:58645707-58645726 | Msa0173400:CDS | 50.0% |
| !! | TTCTAGAGTTGGTGCTGCTG+TGG | - | chr1_4:58645718-58645737 | Msa0173400:CDS | 50.0% |
| GGTCCTCTCATTAGCAGAGT+TGG | - | chr1_4:58644543-58644562 | Msa0173400:CDS | 50.0% | |
| GGAATTGGGAGTCCTGTGAT+TGG | - | chr1_4:58644573-58644592 | Msa0173400:intron | 50.0% | |
| !! | ATTGGGGGTAACGGAAGTGA+TGG | - | chr1_4:58644603-58644622 | Msa0173400:intron | 50.0% |
| CGACGACAAGCCGGAAAAAA+TGG | - | chr1_4:58645413-58645432 | Msa0173400:intron | 50.0% | |
| !! | ACAAGGGCATGGGTTTTGCT+TGG | - | chr1_4:58645664-58645683 | Msa0173400:CDS | 50.0% |
| !! | GGCTTGGGTGTTTCTAGAGT+TGG | - | chr1_4:58645707-58645726 | Msa0173400:CDS | 50.0% |
| !! | TTCTAGAGTTGGTGCTGCTG+TGG | - | chr1_4:58645718-58645737 | Msa0173400:CDS | 50.0% |
| GCCCCAACTCTGCTAATGAG+AGG | + | chr1_4:58644549-58644568 | None:intergenic | 55.0% | |
| AAAGAGATGGTAGGCGCGCT+TGG | - | chr1_4:58644833-58644852 | Msa0173400:intron | 55.0% | |
| GCCCCAACTCTGCTAATGAG+AGG | + | chr1_4:58644549-58644568 | None:intergenic | 55.0% | |
| AAAGAGATGGTAGGCGCGCT+TGG | - | chr1_4:58644833-58644852 | Msa0173400:intron | 55.0% | |
| GGACATTCGCAGTCGCCGAA+TGG | - | chr1_4:58644522-58644541 | Msa0173400:intron | 60.0% | |
| GGACATTCGCAGTCGCCGAA+TGG | - | chr1_4:58644522-58644541 | Msa0173400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58644405 | 58645873 | 58644405 | ID=Msa0173400;Name=Msa0173400 |
| chr1_4 | mRNA | 58644405 | 58645873 | 58644405 | ID=Msa0173400-mRNA-1;Parent=Msa0173400;Name=Msa0173400-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0|0|4|0|108 |
| chr1_4 | exon | 58645636 | 58645873 | 58645636 | ID=Msa0173400-mRNA-1:exon:18247;Parent=Msa0173400-mRNA-1 |
| chr1_4 | exon | 58644593 | 58644618 | 58644593 | ID=Msa0173400-mRNA-1:exon:18246;Parent=Msa0173400-mRNA-1 |
| chr1_4 | exon | 58644530 | 58644580 | 58644530 | ID=Msa0173400-mRNA-1:exon:18245;Parent=Msa0173400-mRNA-1 |
| chr1_4 | exon | 58644405 | 58644413 | 58644405 | ID=Msa0173400-mRNA-1:exon:18244;Parent=Msa0173400-mRNA-1 |
| chr1_4 | CDS | 58645636 | 58645873 | 58645636 | ID=Msa0173400-mRNA-1:cds;Parent=Msa0173400-mRNA-1 |
| chr1_4 | CDS | 58644593 | 58644618 | 58644593 | ID=Msa0173400-mRNA-1:cds;Parent=Msa0173400-mRNA-1 |
| chr1_4 | CDS | 58644530 | 58644580 | 58644530 | ID=Msa0173400-mRNA-1:cds;Parent=Msa0173400-mRNA-1 |
| chr1_4 | CDS | 58644405 | 58644413 | 58644405 | ID=Msa0173400-mRNA-1:cds;Parent=Msa0173400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
