Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173500 | sp|Q9Y7P0|RISA_SCHPO | 54.305 | 151 | 67 | 1 | 57 | 207 | 1 | 149 | 1.41e-46 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173500 | A0A072VKG0 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 1.28e-141 | 412 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0173500 | Msa0833190 | 0.808471 | 3.047853e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173500 | MtrunA17_Chr1g0181701 | 96.635 | 208 | 7 | 0 | 1 | 208 | 1 | 208 | 2.46e-145 | 412 |
| Msa0173500 | MtrunA17_Chr4g0021091 | 75.829 | 211 | 40 | 4 | 1 | 208 | 6 | 208 | 1.47e-106 | 313 |
| Msa0173500 | MtrunA17_Chr1g0181721 | 94.231 | 156 | 8 | 1 | 214 | 369 | 864 | 1018 | 9.65e-95 | 308 |
| Msa0173500 | MtrunA17_Chr4g0031201 | 71.212 | 66 | 19 | 0 | 65 | 130 | 1 | 66 | 1.14e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173500 | AT2G20690.1 | 71.975 | 157 | 41 | 2 | 52 | 208 | 59 | 212 | 2.43e-71 | 224 |
Find 99 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCTTCTTCAGGAATTC+AGG | 0.237048 | 1_4:-58792318 | Msa0173500:intron |
| ATTCTTTGTGGGTGAAGATT+AGG | 0.274378 | 1_4:-58793093 | Msa0173500:CDS |
| TTCGAGATTCACCGGTGAAC+CGG | 0.292035 | 1_4:+58793210 | None:intergenic |
| TAGTGAACTTGTTTCTGATT+TGG | 0.305509 | 1_4:-58791823 | Msa0173500:CDS |
| TTCTTTGTGGGTGAAGATTA+GGG | 0.311609 | 1_4:-58793092 | Msa0173500:CDS |
| ACTCTATATCAGGCAATTCT+TGG | 0.313246 | 1_4:-58792038 | Msa0173500:CDS |
| GCCTGATATAGAGTCAATTT+AGG | 0.318810 | 1_4:+58792047 | None:intergenic |
| TCCTAAATTGACTCTATATC+AGG | 0.352943 | 1_4:-58792048 | Msa0173500:CDS |
| GGGAGGGTTTGAATCGGAAA+TGG | 0.354448 | 1_4:+58793545 | None:intergenic |
| AAGGCATTGGATTGGGATAT+AGG | 0.356309 | 1_4:+58793468 | None:intergenic |
| AGGTTTCACAGCTGCTCTAT+AGG | 0.360588 | 1_4:+58791950 | None:intergenic |
| GGAGGGTTTGAATCGGAAAT+GGG | 0.364764 | 1_4:+58793546 | None:intergenic |
| GGGTGTGAGAAGTGATTGTT+GGG | 0.369828 | 1_4:+58793569 | None:intergenic |
| GCGGAGAGTGATGGGTTTGC+GGG | 0.377969 | 1_4:+58793498 | None:intergenic |
| GCTGGGGAATCATCTTCTTC+AGG | 0.379627 | 1_4:-58792326 | Msa0173500:CDS |
| GAAGATTAGGGTTGAGAAGA+AGG | 0.393584 | 1_4:-58793080 | Msa0173500:CDS |
| GGTCTAGGATGTGATGTCTT+TGG | 0.403891 | 1_4:+58792371 | None:intergenic |
| GAGGGTTTGAATCGGAAATG+GGG | 0.405442 | 1_4:+58793547 | None:intergenic |
| AGGGTTTGAATCGGAAATGG+GGG | 0.410939 | 1_4:+58793548 | None:intergenic |
| TGCTACACCGACGGTGAAAT+CGG | 0.412121 | 1_4:+58793273 | None:intergenic |
| ACTGGCCTCGTTGAAGAAAT+CGG | 0.413747 | 1_4:-58793442 | Msa0173500:CDS |
| TTACCTTGAAGGACAACCTC+TGG | 0.418065 | 1_4:-58792072 | Msa0173500:CDS |
| GGGGTGTGAGAAGTGATTGT+TGG | 0.420093 | 1_4:+58793568 | None:intergenic |
| TGAAGTATATTGTGCCTAAA+GGG | 0.429743 | 1_4:-58793051 | Msa0173500:CDS |
| CAAGGTCACGTGGATGGCAC+GGG | 0.434702 | 1_4:-58793145 | Msa0173500:CDS |
| CAGTGAAAAGGCATTGGATT+GGG | 0.443221 | 1_4:+58793461 | None:intergenic |
| TTCACATTGACTGCTTGATC+GGG | 0.443383 | 1_4:+58792350 | None:intergenic |
| GTCCTCGACGGCGTCAGCCT+TGG | 0.444801 | 1_4:-58793355 | Msa0173500:CDS |
| TTGAAGTATATTGTGCCTAA+AGG | 0.450060 | 1_4:-58793052 | Msa0173500:CDS |
| ATTCACATTGACTGCTTGAT+CGG | 0.456516 | 1_4:+58792349 | None:intergenic |
| AGAAAGATGCGAAGAGGGGA+GGG | 0.459067 | 1_4:+58793529 | None:intergenic |
| GATCCAGAGGTTGTCCTTCA+AGG | 0.468009 | 1_4:+58792069 | None:intergenic |
| TTGACTGCTTGATCGGGTCT+AGG | 0.468019 | 1_4:+58792356 | None:intergenic |
| TCCGAAGGCATTATGTCCTC+AGG | 0.468713 | 1_4:+58791930 | None:intergenic |
| TCAAGGTCACGTGGATGGCA+CGG | 0.471835 | 1_4:-58793146 | Msa0173500:CDS |
| CTTCAACGAGGCCAGTGAAA+AGG | 0.473804 | 1_4:+58793449 | None:intergenic |
| TCGAGATTCACCGGTGAACC+GGG | 0.474305 | 1_4:+58793211 | None:intergenic |
| CAAGCAGTCAATGTGAATGC+TGG | 0.474799 | 1_4:-58792344 | Msa0173500:CDS |
| TGCGGAGAGTGATGGGTTTG+CGG | 0.478744 | 1_4:+58793497 | None:intergenic |
| CGGTGAAATCGGAAGCGGTT+TGG | 0.487072 | 1_4:+58793284 | None:intergenic |
| GTTAACTCCGGTGAGTAGAA+TGG | 0.487110 | 1_4:-58793182 | Msa0173500:CDS |
| GCCTAAAGGGTTTATTGCTG+TGG | 0.489656 | 1_4:-58793038 | Msa0173500:CDS |
| ACCTGAGGACATAATGCCTT+CGG | 0.490897 | 1_4:-58791931 | Msa0173500:CDS |
| TGTAAGTCGAAACCGCCGTT+AGG | 0.491421 | 1_4:+58793394 | None:intergenic |
| ATTGAAGAAAGATGCGAAGA+GGG | 0.493126 | 1_4:+58793524 | None:intergenic |
| GGTGAGGCATGTGCCGTTGA+CGG | 0.493251 | 1_4:+58793321 | None:intergenic |
| ACCCACAAAGAATCTCCTTC+AGG | 0.494962 | 1_4:+58793103 | None:intergenic |
| TCTCTCCTCGAACTCGAACC+CGG | 0.497578 | 1_4:-58793229 | Msa0173500:CDS |
| AAGAAAGATGCGAAGAGGGG+AGG | 0.502303 | 1_4:+58793528 | None:intergenic |
| AAGCAGTCAATGTGAATGCT+GGG | 0.505662 | 1_4:-58792343 | Msa0173500:CDS |
| AAAGGGTTTATTGCTGTGGA+TGG | 0.510430 | 1_4:-58793034 | Msa0173500:CDS |
| TTCCTGAAGGAGATTCTTTG+TGG | 0.511063 | 1_4:-58793105 | Msa0173500:CDS |
| GGGTTTGAATCGGAAATGGG+GGG | 0.513055 | 1_4:+58793549 | None:intergenic |
| GTGAACCGGGTTCGAGTTCG+AGG | 0.513466 | 1_4:+58793224 | None:intergenic |
| GCGTTAGTGCGGAGAGTGAT+GGG | 0.513733 | 1_4:+58793490 | None:intergenic |
| CGAGGCCAGTGAAAAGGCAT+TGG | 0.515599 | 1_4:+58793455 | None:intergenic |
| TTAACTCCGGTGAGTAGAAT+GGG | 0.518507 | 1_4:-58793181 | Msa0173500:CDS |
| AACGCTCTTTCGAGATTCAC+CGG | 0.519943 | 1_4:+58793202 | None:intergenic |
| CGAACTCGAACCCGGTTCAC+CGG | 0.526596 | 1_4:-58793221 | Msa0173500:CDS |
| ATAGTAAAACAAAATGATAG+TGG | 0.529484 | 1_4:-58792011 | Msa0173500:CDS |
| GGCGTTAGTGCGGAGAGTGA+TGG | 0.530544 | 1_4:+58793489 | None:intergenic |
| GGTTTGGTCGAATTCTGTTA+CGG | 0.531348 | 1_4:+58793300 | None:intergenic |
| CCAGTGAAAAGGCATTGGAT+TGG | 0.536141 | 1_4:+58793460 | None:intergenic |
| AAGGCTGACGCCGTCGAGGA+CGG | 0.544414 | 1_4:+58793357 | None:intergenic |
| GCTTTGTTGCTACAAGATGC+AGG | 0.544451 | 1_4:+58792113 | None:intergenic |
| TCCTGAAGGAGATTCTTTGT+GGG | 0.545465 | 1_4:-58793104 | Msa0173500:CDS |
| ACCGCTTCCGATTTCACCGT+CGG | 0.547391 | 1_4:-58793280 | Msa0173500:CDS |
| GGCGACAGCATCGCCGTCAA+CGG | 0.553466 | 1_4:-58793334 | Msa0173500:CDS |
| GAGAGTGATGGGTTTGCGGG+TGG | 0.555610 | 1_4:+58793501 | None:intergenic |
| TTGAAGAAAGATGCGAAGAG+GGG | 0.557197 | 1_4:+58793525 | None:intergenic |
| GCAGAATCAGACTCAAAACT+AGG | 0.564474 | 1_4:-58792146 | Msa0173500:CDS |
| TTTGTTCAAGGTCACGTGGA+TGG | 0.569387 | 1_4:-58793151 | Msa0173500:CDS |
| TCCACAGCAATAAACCCTTT+AGG | 0.573093 | 1_4:+58793037 | None:intergenic |
| AAGGTCACGTGGATGGCACG+GGG | 0.573506 | 1_4:-58793144 | Msa0173500:CDS |
| TTTCACCGTCGGTGTAGCAC+CGG | 0.574525 | 1_4:-58793269 | Msa0173500:CDS |
| ATTGTTTCGATGATTCCTGA+AGG | 0.590711 | 1_4:-58793118 | Msa0173500:CDS |
| GAAGAGGGGAGGGTTTGAAT+CGG | 0.593742 | 1_4:+58793539 | None:intergenic |
| TGACGGCGATGCTGTCGCCA+AGG | 0.594031 | 1_4:+58793338 | None:intergenic |
| AATGCTAAAACTTTATCATG+AGG | 0.600450 | 1_4:+58791882 | None:intergenic |
| CGCCAAGGCTGACGCCGTCG+AGG | 0.600871 | 1_4:+58793353 | None:intergenic |
| TCTCGAAAGAGCGTTAACTC+CGG | 0.607673 | 1_4:-58793194 | Msa0173500:CDS |
| AGAGTCAATTTAGGATCCAG+AGG | 0.625003 | 1_4:+58792056 | None:intergenic |
| ACCGACGGTGAAATCGGAAG+CGG | 0.625549 | 1_4:+58793279 | None:intergenic |
| TGTCCACCCATTCTACTCAC+CGG | 0.626670 | 1_4:+58793175 | None:intergenic |
| GGTCGAATTCTGTTACGGTG+AGG | 0.631616 | 1_4:+58793305 | None:intergenic |
| GTGGTGTTAGTGCAAAATTG+TGG | 0.636619 | 1_4:-58791992 | Msa0173500:CDS |
| GATTGAAGAAAGATGCGAAG+AGG | 0.643699 | 1_4:+58793523 | None:intergenic |
| AACGCTAAAACCGTCCTCGA+CGG | 0.653931 | 1_4:-58793367 | Msa0173500:CDS |
| AAACTCGGCGAATCTCCTAA+CGG | 0.657767 | 1_4:-58793409 | Msa0173500:CDS |
| CGGTGCCGATTTCTTCAACG+AGG | 0.662620 | 1_4:+58793437 | None:intergenic |
| GATGAAGAATGACAATCCGA+AGG | 0.664348 | 1_4:+58791915 | None:intergenic |
| TTGGGATATAGGCGTTAGTG+CGG | 0.668315 | 1_4:+58793479 | None:intergenic |
| AGTTTCCGGTGCTACACCGA+CGG | 0.673432 | 1_4:+58793264 | None:intergenic |
| AGCAGTCAATGTGAATGCTG+GGG | 0.683168 | 1_4:-58792342 | Msa0173500:CDS |
| AGGTCACGTGGATGGCACGG+GGG | 0.687554 | 1_4:-58793143 | Msa0173500:CDS |
| GGTGTGAGAAGTGATTGTTG+GGG | 0.689928 | 1_4:+58793570 | None:intergenic |
| ACTCCGGTGAGTAGAATGGG+TGG | 0.693744 | 1_4:-58793178 | Msa0173500:CDS |
| TAGAGCAGCTGTGAAACCTG+AGG | 0.698518 | 1_4:-58791946 | Msa0173500:CDS |
| CTCGGCGAATCTCCTAACGG+CGG | 0.750828 | 1_4:-58793406 | Msa0173500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATTTTGTTTTACTATT+TGG | + | chr1_4:58793419-58793438 | None:intergenic | 15.0% |
| !!! | TATCATTTTGTTTTACTATT+TGG | + | chr1_4:58793419-58793438 | None:intergenic | 15.0% |
| !!! | AGGTTGTTTTAATTTTATGT+TGG | - | chr1_4:58792455-58792474 | Msa0173500:intron | 20.0% |
| !! | AGAACAAGATAAATTTACTA+GGG | + | chr1_4:58792952-58792971 | None:intergenic | 20.0% |
| !! | AAGAACAAGATAAATTTACT+AGG | + | chr1_4:58792953-58792972 | None:intergenic | 20.0% |
| !! | AGTAAATTTATCTTGTTCTT+AGG | - | chr1_4:58792953-58792972 | Msa0173500:intron | 20.0% |
| !! | GTAAATTTATCTTGTTCTTA+GGG | - | chr1_4:58792954-58792973 | Msa0173500:intron | 20.0% |
| !!! | AAACTTATTTTTTACCTTGA+AGG | - | chr1_4:58793348-58793367 | Msa0173500:CDS | 20.0% |
| !! | ATAGTAAAACAAAATGATAG+TGG | - | chr1_4:58793420-58793439 | Msa0173500:CDS | 20.0% |
| !!! | AGGTTGTTTTAATTTTATGT+TGG | - | chr1_4:58792455-58792474 | Msa0173500:intron | 20.0% |
| !! | AGAACAAGATAAATTTACTA+GGG | + | chr1_4:58792952-58792971 | None:intergenic | 20.0% |
| !! | AAGAACAAGATAAATTTACT+AGG | + | chr1_4:58792953-58792972 | None:intergenic | 20.0% |
| !! | AGTAAATTTATCTTGTTCTT+AGG | - | chr1_4:58792953-58792972 | Msa0173500:intron | 20.0% |
| !! | GTAAATTTATCTTGTTCTTA+GGG | - | chr1_4:58792954-58792973 | Msa0173500:intron | 20.0% |
| !!! | AAACTTATTTTTTACCTTGA+AGG | - | chr1_4:58793348-58793367 | Msa0173500:CDS | 20.0% |
| !! | ATAGTAAAACAAAATGATAG+TGG | - | chr1_4:58793420-58793439 | Msa0173500:CDS | 20.0% |
| ! | AACAAGATAAATTTACTAGG+GGG | + | chr1_4:58792950-58792969 | None:intergenic | 25.0% |
| ! | GAACAAGATAAATTTACTAG+GGG | + | chr1_4:58792951-58792970 | None:intergenic | 25.0% |
| ! | ATGAAGAATTTCAACTATAC+TGG | - | chr1_4:58793020-58793039 | Msa0173500:CDS | 25.0% |
| !!! | TTTTAATCTTGTTACTGGTT+AGG | - | chr1_4:58793136-58793155 | Msa0173500:CDS | 25.0% |
| ! | AATGCTAAAACTTTATCATG+AGG | + | chr1_4:58793552-58793571 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGCATTATATCAG+CGG | - | chr1_4:58793559-58793578 | Msa0173500:CDS | 25.0% |
| ! | TAGAACATGTCTGATAAAAA+AGG | + | chr1_4:58793588-58793607 | None:intergenic | 25.0% |
| ! | AACAAGATAAATTTACTAGG+GGG | + | chr1_4:58792950-58792969 | None:intergenic | 25.0% |
| ! | GAACAAGATAAATTTACTAG+GGG | + | chr1_4:58792951-58792970 | None:intergenic | 25.0% |
| ! | ATGAAGAATTTCAACTATAC+TGG | - | chr1_4:58793020-58793039 | Msa0173500:CDS | 25.0% |
| !!! | TTTTAATCTTGTTACTGGTT+AGG | - | chr1_4:58793136-58793155 | Msa0173500:CDS | 25.0% |
| ! | AATGCTAAAACTTTATCATG+AGG | + | chr1_4:58793552-58793571 | None:intergenic | 25.0% |
| !!! | AAGTTTTAGCATTATATCAG+CGG | - | chr1_4:58793559-58793578 | Msa0173500:CDS | 25.0% |
| ! | TAGAACATGTCTGATAAAAA+AGG | + | chr1_4:58793588-58793607 | None:intergenic | 25.0% |
| TTGAAGTATATTGTGCCTAA+AGG | - | chr1_4:58792379-58792398 | Msa0173500:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | - | chr1_4:58792380-58792399 | Msa0173500:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | - | chr1_4:58792435-58792454 | Msa0173500:intron | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | - | chr1_4:58792534-58792553 | Msa0173500:intron | 30.0% |
| !! | ATCTTGAAGTTGATGTTCTT+GGG | - | chr1_4:58792535-58792554 | Msa0173500:intron | 30.0% |
| GCTTACGAAAATAGCTTATA+CGG | - | chr1_4:58792708-58792727 | Msa0173500:intron | 30.0% | |
| !! | TCAGGTTTTAATCTTGTTAC+TGG | - | chr1_4:58793131-58793150 | Msa0173500:CDS | 30.0% |
| ! | TCCTAAATTGACTCTATATC+AGG | - | chr1_4:58793383-58793402 | Msa0173500:CDS | 30.0% |
| !! | TAGTGAACTTGTTTCTGATT+TGG | - | chr1_4:58793608-58793627 | Msa0173500:CDS | 30.0% |
| TTGAAGTATATTGTGCCTAA+AGG | - | chr1_4:58792379-58792398 | Msa0173500:CDS | 30.0% | |
| TGAAGTATATTGTGCCTAAA+GGG | - | chr1_4:58792380-58792399 | Msa0173500:CDS | 30.0% | |
| !!! | GTTGATGTTTTTGATGATGA+AGG | - | chr1_4:58792435-58792454 | Msa0173500:intron | 30.0% |
| !! | AATCTTGAAGTTGATGTTCT+TGG | - | chr1_4:58792534-58792553 | Msa0173500:intron | 30.0% |
| !! | ATCTTGAAGTTGATGTTCTT+GGG | - | chr1_4:58792535-58792554 | Msa0173500:intron | 30.0% |
| GCTTACGAAAATAGCTTATA+CGG | - | chr1_4:58792708-58792727 | Msa0173500:intron | 30.0% | |
| !! | TCAGGTTTTAATCTTGTTAC+TGG | - | chr1_4:58793131-58793150 | Msa0173500:CDS | 30.0% |
| ! | TCCTAAATTGACTCTATATC+AGG | - | chr1_4:58793383-58793402 | Msa0173500:CDS | 30.0% |
| !! | TAGTGAACTTGTTTCTGATT+TGG | - | chr1_4:58793608-58793627 | Msa0173500:CDS | 30.0% |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | + | chr1_4:58791843-58791862 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | + | chr1_4:58791849-58791868 | None:intergenic | 35.0% |
| ATTGAAGAAAGATGCGAAGA+GGG | + | chr1_4:58791910-58791929 | None:intergenic | 35.0% | |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | + | chr1_4:58792184-58792203 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | - | chr1_4:58792313-58792332 | Msa0173500:intron | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | - | chr1_4:58792338-58792357 | Msa0173500:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | - | chr1_4:58792339-58792358 | Msa0173500:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | + | chr1_4:58792510-58792529 | None:intergenic | 35.0% |
| !! | GCTATTTTCGTAAGCTATAC+TGG | + | chr1_4:58792703-58792722 | None:intergenic | 35.0% |
| ACATAGATCTGTCGACATAA+AGG | + | chr1_4:58792861-58792880 | None:intergenic | 35.0% | |
| ATATTTGTAACCACAGTCAG+TGG | - | chr1_4:58792893-58792912 | Msa0173500:intron | 35.0% | |
| TATCTTGTTCTTAGGGAATG+AGG | - | chr1_4:58792961-58792980 | Msa0173500:intron | 35.0% | |
| ATCTTGTTCTTAGGGAATGA+GGG | - | chr1_4:58792962-58792981 | Msa0173500:intron | 35.0% | |
| ! | ATTCACATTGACTGCTTGAT+CGG | + | chr1_4:58793085-58793104 | None:intergenic | 35.0% |
| ATCATCTTCTTCAGGAATTC+AGG | - | chr1_4:58793113-58793132 | Msa0173500:CDS | 35.0% | |
| GCCTGATATAGAGTCAATTT+AGG | + | chr1_4:58793387-58793406 | None:intergenic | 35.0% | |
| ACTCTATATCAGGCAATTCT+TGG | - | chr1_4:58793393-58793412 | Msa0173500:CDS | 35.0% | |
| ! | GGTTTTTGATGTTAAGGTGA+TGG | + | chr1_4:58791843-58791862 | None:intergenic | 35.0% |
| ! | TGTTGGGGTTTTTGATGTTA+AGG | + | chr1_4:58791849-58791868 | None:intergenic | 35.0% |
| ATTGAAGAAAGATGCGAAGA+GGG | + | chr1_4:58791910-58791929 | None:intergenic | 35.0% | |
| ! | GATGTTTTTCTCAGAGTTTC+CGG | + | chr1_4:58792184-58792203 | None:intergenic | 35.0% |
| ATTGTTTCGATGATTCCTGA+AGG | - | chr1_4:58792313-58792332 | Msa0173500:intron | 35.0% | |
| ATTCTTTGTGGGTGAAGATT+AGG | - | chr1_4:58792338-58792357 | Msa0173500:CDS | 35.0% | |
| TTCTTTGTGGGTGAAGATTA+GGG | - | chr1_4:58792339-58792358 | Msa0173500:CDS | 35.0% | |
| ! | TTTTGACCAACCTTCTTCAA+CGG | + | chr1_4:58792510-58792529 | None:intergenic | 35.0% |
| !! | GCTATTTTCGTAAGCTATAC+TGG | + | chr1_4:58792703-58792722 | None:intergenic | 35.0% |
| ACATAGATCTGTCGACATAA+AGG | + | chr1_4:58792861-58792880 | None:intergenic | 35.0% | |
| ATATTTGTAACCACAGTCAG+TGG | - | chr1_4:58792893-58792912 | Msa0173500:intron | 35.0% | |
| TATCTTGTTCTTAGGGAATG+AGG | - | chr1_4:58792961-58792980 | Msa0173500:intron | 35.0% | |
| ATCTTGTTCTTAGGGAATGA+GGG | - | chr1_4:58792962-58792981 | Msa0173500:intron | 35.0% | |
| ! | ATTCACATTGACTGCTTGAT+CGG | + | chr1_4:58793085-58793104 | None:intergenic | 35.0% |
| ATCATCTTCTTCAGGAATTC+AGG | - | chr1_4:58793113-58793132 | Msa0173500:CDS | 35.0% | |
| GCCTGATATAGAGTCAATTT+AGG | + | chr1_4:58793387-58793406 | None:intergenic | 35.0% | |
| ACTCTATATCAGGCAATTCT+TGG | - | chr1_4:58793393-58793412 | Msa0173500:CDS | 35.0% | |
| TTGAAGAAAGATGCGAAGAG+GGG | + | chr1_4:58791909-58791928 | None:intergenic | 40.0% | |
| GATTGAAGAAAGATGCGAAG+AGG | + | chr1_4:58791911-58791930 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | + | chr1_4:58791966-58791985 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | + | chr1_4:58791973-58791992 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | + | chr1_4:58792017-58792036 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | + | chr1_4:58792134-58792153 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | - | chr1_4:58792250-58792269 | Msa0173500:intron | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | - | chr1_4:58792268-58792287 | Msa0173500:intron | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | - | chr1_4:58792276-58792295 | Msa0173500:intron | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | - | chr1_4:58792326-58792345 | Msa0173500:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | - | chr1_4:58792327-58792346 | Msa0173500:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | - | chr1_4:58792351-58792370 | Msa0173500:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | + | chr1_4:58792397-58792416 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | - | chr1_4:58792397-58792416 | Msa0173500:intron | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | - | chr1_4:58792497-58792516 | Msa0173500:intron | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | - | chr1_4:58792509-58792528 | Msa0173500:intron | 40.0% |
| TTCTTCATGGTCTTCATCTC+AGG | - | chr1_4:58792611-58792630 | Msa0173500:intron | 40.0% | |
| GACAGATCTATGTGAAACAC+AGG | - | chr1_4:58792868-58792887 | Msa0173500:intron | 40.0% | |
| CTAGGGGGAAATGCATAAAT+AGG | + | chr1_4:58792935-58792954 | None:intergenic | 40.0% | |
| TCTTGTTCTTAGGGAATGAG+GGG | - | chr1_4:58792963-58792982 | Msa0173500:intron | 40.0% | |
| !! | TTCAACTATACTGGTTCTGC+AGG | - | chr1_4:58793029-58793048 | Msa0173500:CDS | 40.0% |
| !! | TCAACTATACTGGTTCTGCA+GGG | - | chr1_4:58793030-58793049 | Msa0173500:CDS | 40.0% |
| ! | TTCACATTGACTGCTTGATC+GGG | + | chr1_4:58793084-58793103 | None:intergenic | 40.0% |
| AAGCAGTCAATGTGAATGCT+GGG | - | chr1_4:58793088-58793107 | Msa0173500:CDS | 40.0% | |
| GCAGAATCAGACTCAAAACT+AGG | - | chr1_4:58793285-58793304 | Msa0173500:CDS | 40.0% | |
| ! | AGAGTCAATTTAGGATCCAG+AGG | + | chr1_4:58793378-58793397 | None:intergenic | 40.0% |
| ! | GTGGTGTTAGTGCAAAATTG+TGG | - | chr1_4:58793439-58793458 | Msa0173500:CDS | 40.0% |
| GATGAAGAATGACAATCCGA+AGG | + | chr1_4:58793519-58793538 | None:intergenic | 40.0% | |
| TTGAAGAAAGATGCGAAGAG+GGG | + | chr1_4:58791909-58791928 | None:intergenic | 40.0% | |
| GATTGAAGAAAGATGCGAAG+AGG | + | chr1_4:58791911-58791930 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGATTGGGATAT+AGG | + | chr1_4:58791966-58791985 | None:intergenic | 40.0% |
| !! | CAGTGAAAAGGCATTGGATT+GGG | + | chr1_4:58791973-58791992 | None:intergenic | 40.0% |
| !!! | AGATTCGCCGAGTTTTTTGA+CGG | + | chr1_4:58792017-58792036 | None:intergenic | 40.0% |
| ! | GGTTTGGTCGAATTCTGTTA+CGG | + | chr1_4:58792134-58792153 | None:intergenic | 40.0% |
| TTAACTCCGGTGAGTAGAAT+GGG | - | chr1_4:58792250-58792269 | Msa0173500:intron | 40.0% | |
| ! | ATGGGTGGACATTTTGTTCA+AGG | - | chr1_4:58792268-58792287 | Msa0173500:intron | 40.0% |
| ! | ACATTTTGTTCAAGGTCACG+TGG | - | chr1_4:58792276-58792295 | Msa0173500:intron | 40.0% |
| TTCCTGAAGGAGATTCTTTG+TGG | - | chr1_4:58792326-58792345 | Msa0173500:CDS | 40.0% | |
| TCCTGAAGGAGATTCTTTGT+GGG | - | chr1_4:58792327-58792346 | Msa0173500:CDS | 40.0% | |
| GAAGATTAGGGTTGAGAAGA+AGG | - | chr1_4:58792351-58792370 | Msa0173500:CDS | 40.0% | |
| TCCACAGCAATAAACCCTTT+AGG | + | chr1_4:58792397-58792416 | None:intergenic | 40.0% | |
| AAAGGGTTTATTGCTGTGGA+TGG | - | chr1_4:58792397-58792416 | Msa0173500:intron | 40.0% | |
| ! | GATTGTTGTTCCGTTGAAGA+AGG | - | chr1_4:58792497-58792516 | Msa0173500:intron | 40.0% |
| ! | GTTGAAGAAGGTTGGTCAAA+AGG | - | chr1_4:58792509-58792528 | Msa0173500:intron | 40.0% |
| TTCTTCATGGTCTTCATCTC+AGG | - | chr1_4:58792611-58792630 | Msa0173500:intron | 40.0% | |
| GACAGATCTATGTGAAACAC+AGG | - | chr1_4:58792868-58792887 | Msa0173500:intron | 40.0% | |
| CTAGGGGGAAATGCATAAAT+AGG | + | chr1_4:58792935-58792954 | None:intergenic | 40.0% | |
| TCTTGTTCTTAGGGAATGAG+GGG | - | chr1_4:58792963-58792982 | Msa0173500:intron | 40.0% | |
| !! | TTCAACTATACTGGTTCTGC+AGG | - | chr1_4:58793029-58793048 | Msa0173500:CDS | 40.0% |
| !! | TCAACTATACTGGTTCTGCA+GGG | - | chr1_4:58793030-58793049 | Msa0173500:CDS | 40.0% |
| ! | TTCACATTGACTGCTTGATC+GGG | + | chr1_4:58793084-58793103 | None:intergenic | 40.0% |
| AAGCAGTCAATGTGAATGCT+GGG | - | chr1_4:58793088-58793107 | Msa0173500:CDS | 40.0% | |
| GCAGAATCAGACTCAAAACT+AGG | - | chr1_4:58793285-58793304 | Msa0173500:CDS | 40.0% | |
| ! | AGAGTCAATTTAGGATCCAG+AGG | + | chr1_4:58793378-58793397 | None:intergenic | 40.0% |
| ! | GTGGTGTTAGTGCAAAATTG+TGG | - | chr1_4:58793439-58793458 | Msa0173500:CDS | 40.0% |
| GATGAAGAATGACAATCCGA+AGG | + | chr1_4:58793519-58793538 | None:intergenic | 40.0% | |
| GGTGTGAGAAGTGATTGTTG+GGG | + | chr1_4:58791864-58791883 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | + | chr1_4:58791865-58791884 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | + | chr1_4:58791886-58791905 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | + | chr1_4:58791887-58791906 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | + | chr1_4:58791888-58791907 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | + | chr1_4:58791955-58791974 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | + | chr1_4:58791974-58791993 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | - | chr1_4:58791971-58791990 | Msa0173500:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | - | chr1_4:58791989-58792008 | Msa0173500:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | - | chr1_4:58792007-58792026 | Msa0173500:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | - | chr1_4:58792022-58792041 | Msa0173500:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | + | chr1_4:58792232-58792251 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | - | chr1_4:58792237-58792256 | Msa0173500:intron | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | - | chr1_4:58792249-58792268 | Msa0173500:intron | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | - | chr1_4:58792280-58792299 | Msa0173500:intron | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | + | chr1_4:58792331-58792350 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | - | chr1_4:58792393-58792412 | Msa0173500:intron | 45.0% | |
| GTTGTTCCGTTGAAGAAGGT+TGG | - | chr1_4:58792501-58792520 | Msa0173500:intron | 45.0% | |
| ! | TTCTTGGGAAGCATGTTGAG+AGG | - | chr1_4:58792550-58792569 | Msa0173500:intron | 45.0% |
| GTTGAGAGGCTTCTTAGTAG+TGG | - | chr1_4:58792564-58792583 | Msa0173500:intron | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | - | chr1_4:58792587-58792606 | Msa0173500:intron | 45.0% |
| ! | CTTCAGTAAACCACTGACTG+TGG | + | chr1_4:58792906-58792925 | None:intergenic | 45.0% |
| CAGTCAGTGGTTTACTGAAG+TGG | - | chr1_4:58792906-58792925 | Msa0173500:intron | 45.0% | |
| !! | CAACTATACTGGTTCTGCAG+GGG | - | chr1_4:58793031-58793050 | Msa0173500:CDS | 45.0% |
| !! | AACTATACTGGTTCTGCAGG+GGG | - | chr1_4:58793032-58793051 | Msa0173500:CDS | 45.0% |
| ! | GGTCTAGGATGTGATGTCTT+TGG | + | chr1_4:58793063-58793082 | None:intergenic | 45.0% |
| CAAGCAGTCAATGTGAATGC+TGG | - | chr1_4:58793087-58793106 | Msa0173500:CDS | 45.0% | |
| AGCAGTCAATGTGAATGCTG+GGG | - | chr1_4:58793089-58793108 | Msa0173500:CDS | 45.0% | |
| ! | GCTTTGTTGCTACAAGATGC+AGG | + | chr1_4:58793321-58793340 | None:intergenic | 45.0% |
| TTACCTTGAAGGACAACCTC+TGG | - | chr1_4:58793359-58793378 | Msa0173500:CDS | 45.0% | |
| AGGTTTCACAGCTGCTCTAT+AGG | + | chr1_4:58793484-58793503 | None:intergenic | 45.0% | |
| ACCTGAGGACATAATGCCTT+CGG | - | chr1_4:58793500-58793519 | Msa0173500:CDS | 45.0% | |
| GGTGTGAGAAGTGATTGTTG+GGG | + | chr1_4:58791864-58791883 | None:intergenic | 45.0% | |
| GGGTGTGAGAAGTGATTGTT+GGG | + | chr1_4:58791865-58791884 | None:intergenic | 45.0% | |
| AGGGTTTGAATCGGAAATGG+GGG | + | chr1_4:58791886-58791905 | None:intergenic | 45.0% | |
| GAGGGTTTGAATCGGAAATG+GGG | + | chr1_4:58791887-58791906 | None:intergenic | 45.0% | |
| GGAGGGTTTGAATCGGAAAT+GGG | + | chr1_4:58791888-58791907 | None:intergenic | 45.0% | |
| TTGGGATATAGGCGTTAGTG+CGG | + | chr1_4:58791955-58791974 | None:intergenic | 45.0% | |
| !! | CCAGTGAAAAGGCATTGGAT+TGG | + | chr1_4:58791974-58791993 | None:intergenic | 45.0% |
| ! | CCAATCCAATGCCTTTTCAC+TGG | - | chr1_4:58791971-58791990 | Msa0173500:CDS | 45.0% |
| ! | ACTGGCCTCGTTGAAGAAAT+CGG | - | chr1_4:58791989-58792008 | Msa0173500:CDS | 45.0% |
| ATCGGCACCGTCAAAAAACT+CGG | - | chr1_4:58792007-58792026 | Msa0173500:CDS | 45.0% | |
| AAACTCGGCGAATCTCCTAA+CGG | - | chr1_4:58792022-58792041 | Msa0173500:CDS | 45.0% | |
| AACGCTCTTTCGAGATTCAC+CGG | + | chr1_4:58792232-58792251 | None:intergenic | 45.0% | |
| !! | TCTCGAAAGAGCGTTAACTC+CGG | - | chr1_4:58792237-58792256 | Msa0173500:intron | 45.0% |
| GTTAACTCCGGTGAGTAGAA+TGG | - | chr1_4:58792249-58792268 | Msa0173500:intron | 45.0% | |
| TTTGTTCAAGGTCACGTGGA+TGG | - | chr1_4:58792280-58792299 | Msa0173500:intron | 45.0% | |
| ACCCACAAAGAATCTCCTTC+AGG | + | chr1_4:58792331-58792350 | None:intergenic | 45.0% | |
| GCCTAAAGGGTTTATTGCTG+TGG | - | chr1_4:58792393-58792412 | Msa0173500:intron | 45.0% | |
| GTTGTTCCGTTGAAGAAGGT+TGG | - | chr1_4:58792501-58792520 | Msa0173500:intron | 45.0% | |
| ! | TTCTTGGGAAGCATGTTGAG+AGG | - | chr1_4:58792550-58792569 | Msa0173500:intron | 45.0% |
| GTTGAGAGGCTTCTTAGTAG+TGG | - | chr1_4:58792564-58792583 | Msa0173500:intron | 45.0% | |
| ! | TTTTGTTCCCTCCATTGCGT+CGG | - | chr1_4:58792587-58792606 | Msa0173500:intron | 45.0% |
| ! | CTTCAGTAAACCACTGACTG+TGG | + | chr1_4:58792906-58792925 | None:intergenic | 45.0% |
| CAGTCAGTGGTTTACTGAAG+TGG | - | chr1_4:58792906-58792925 | Msa0173500:intron | 45.0% | |
| !! | CAACTATACTGGTTCTGCAG+GGG | - | chr1_4:58793031-58793050 | Msa0173500:CDS | 45.0% |
| !! | AACTATACTGGTTCTGCAGG+GGG | - | chr1_4:58793032-58793051 | Msa0173500:CDS | 45.0% |
| ! | GGTCTAGGATGTGATGTCTT+TGG | + | chr1_4:58793063-58793082 | None:intergenic | 45.0% |
| CAAGCAGTCAATGTGAATGC+TGG | - | chr1_4:58793087-58793106 | Msa0173500:CDS | 45.0% | |
| AGCAGTCAATGTGAATGCTG+GGG | - | chr1_4:58793089-58793108 | Msa0173500:CDS | 45.0% | |
| ! | GCTTTGTTGCTACAAGATGC+AGG | + | chr1_4:58793321-58793340 | None:intergenic | 45.0% |
| TTACCTTGAAGGACAACCTC+TGG | - | chr1_4:58793359-58793378 | Msa0173500:CDS | 45.0% | |
| AGGTTTCACAGCTGCTCTAT+AGG | + | chr1_4:58793484-58793503 | None:intergenic | 45.0% | |
| ACCTGAGGACATAATGCCTT+CGG | - | chr1_4:58793500-58793519 | Msa0173500:CDS | 45.0% | |
| GGGGTGTGAGAAGTGATTGT+TGG | + | chr1_4:58791866-58791885 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | + | chr1_4:58791885-58791904 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | + | chr1_4:58791889-58791908 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | + | chr1_4:58791895-58791914 | None:intergenic | 50.0% | |
| AGAAAGATGCGAAGAGGGGA+GGG | + | chr1_4:58791905-58791924 | None:intergenic | 50.0% | |
| AAGAAAGATGCGAAGAGGGG+AGG | + | chr1_4:58791906-58791925 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | + | chr1_4:58791985-58792004 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | + | chr1_4:58792040-58792059 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | - | chr1_4:58792064-58792083 | Msa0173500:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | + | chr1_4:58792129-58792148 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | + | chr1_4:58792161-58792180 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | + | chr1_4:58792224-58792243 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | + | chr1_4:58792259-58792278 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | + | chr1_4:58792597-58792616 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | + | chr1_4:58792598-58792617 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | + | chr1_4:58792601-58792620 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | - | chr1_4:58792598-58792617 | Msa0173500:intron | 50.0% | |
| TTGACTGCTTGATCGGGTCT+AGG | + | chr1_4:58793078-58793097 | None:intergenic | 50.0% | |
| GCTGGGGAATCATCTTCTTC+AGG | - | chr1_4:58793105-58793124 | Msa0173500:CDS | 50.0% | |
| GATCCAGAGGTTGTCCTTCA+AGG | + | chr1_4:58793365-58793384 | None:intergenic | 50.0% | |
| TAGAGCAGCTGTGAAACCTG+AGG | - | chr1_4:58793485-58793504 | Msa0173500:CDS | 50.0% | |
| !! | TCCGAAGGCATTATGTCCTC+AGG | + | chr1_4:58793504-58793523 | None:intergenic | 50.0% |
| GGGGTGTGAGAAGTGATTGT+TGG | + | chr1_4:58791866-58791885 | None:intergenic | 50.0% | |
| GGGTTTGAATCGGAAATGGG+GGG | + | chr1_4:58791885-58791904 | None:intergenic | 50.0% | |
| GGGAGGGTTTGAATCGGAAA+TGG | + | chr1_4:58791889-58791908 | None:intergenic | 50.0% | |
| GAAGAGGGGAGGGTTTGAAT+CGG | + | chr1_4:58791895-58791914 | None:intergenic | 50.0% | |
| AGAAAGATGCGAAGAGGGGA+GGG | + | chr1_4:58791905-58791924 | None:intergenic | 50.0% | |
| AAGAAAGATGCGAAGAGGGG+AGG | + | chr1_4:58791906-58791925 | None:intergenic | 50.0% | |
| CTTCAACGAGGCCAGTGAAA+AGG | + | chr1_4:58791985-58792004 | None:intergenic | 50.0% | |
| TGTAAGTCGAAACCGCCGTT+AGG | + | chr1_4:58792040-58792059 | None:intergenic | 50.0% | |
| AACGCTAAAACCGTCCTCGA+CGG | - | chr1_4:58792064-58792083 | Msa0173500:CDS | 50.0% | |
| GGTCGAATTCTGTTACGGTG+AGG | + | chr1_4:58792129-58792148 | None:intergenic | 50.0% | |
| TGCTACACCGACGGTGAAAT+CGG | + | chr1_4:58792161-58792180 | None:intergenic | 50.0% | |
| TTCGAGATTCACCGGTGAAC+CGG | + | chr1_4:58792224-58792243 | None:intergenic | 50.0% | |
| TGTCCACCCATTCTACTCAC+CGG | + | chr1_4:58792259-58792278 | None:intergenic | 50.0% | |
| GAAGAATCCGACGCAATGGA+GGG | + | chr1_4:58792597-58792616 | None:intergenic | 50.0% | |
| TGAAGAATCCGACGCAATGG+AGG | + | chr1_4:58792598-58792617 | None:intergenic | 50.0% | |
| CCATGAAGAATCCGACGCAA+TGG | + | chr1_4:58792601-58792620 | None:intergenic | 50.0% | |
| CCATTGCGTCGGATTCTTCA+TGG | - | chr1_4:58792598-58792617 | Msa0173500:intron | 50.0% | |
| TTGACTGCTTGATCGGGTCT+AGG | + | chr1_4:58793078-58793097 | None:intergenic | 50.0% | |
| GCTGGGGAATCATCTTCTTC+AGG | - | chr1_4:58793105-58793124 | Msa0173500:CDS | 50.0% | |
| GATCCAGAGGTTGTCCTTCA+AGG | + | chr1_4:58793365-58793384 | None:intergenic | 50.0% | |
| TAGAGCAGCTGTGAAACCTG+AGG | - | chr1_4:58793485-58793504 | Msa0173500:CDS | 50.0% | |
| !! | TCCGAAGGCATTATGTCCTC+AGG | + | chr1_4:58793504-58793523 | None:intergenic | 50.0% |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | + | chr1_4:58791937-58791956 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | + | chr1_4:58791944-58791963 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | + | chr1_4:58791979-58791998 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | + | chr1_4:58791997-58792016 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | + | chr1_4:58792150-58792169 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | - | chr1_4:58792151-58792170 | Msa0173500:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | + | chr1_4:58792155-58792174 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | - | chr1_4:58792162-58792181 | Msa0173500:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | + | chr1_4:58792170-58792189 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | - | chr1_4:58792202-58792221 | Msa0173500:intron | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | + | chr1_4:58792223-58792242 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | - | chr1_4:58792253-58792272 | Msa0173500:intron | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | - | chr1_4:58792285-58792304 | Msa0173500:intron | 55.0% | |
| !! | TGCGGAGAGTGATGGGTTTG+CGG | + | chr1_4:58791937-58791956 | None:intergenic | 55.0% |
| GCGTTAGTGCGGAGAGTGAT+GGG | + | chr1_4:58791944-58791963 | None:intergenic | 55.0% | |
| ! | CGAGGCCAGTGAAAAGGCAT+TGG | + | chr1_4:58791979-58791998 | None:intergenic | 55.0% |
| !! | CGGTGCCGATTTCTTCAACG+AGG | + | chr1_4:58791997-58792016 | None:intergenic | 55.0% |
| CGGTGAAATCGGAAGCGGTT+TGG | + | chr1_4:58792150-58792169 | None:intergenic | 55.0% | |
| ACCGCTTCCGATTTCACCGT+CGG | - | chr1_4:58792151-58792170 | Msa0173500:CDS | 55.0% | |
| ACCGACGGTGAAATCGGAAG+CGG | + | chr1_4:58792155-58792174 | None:intergenic | 55.0% | |
| TTTCACCGTCGGTGTAGCAC+CGG | - | chr1_4:58792162-58792181 | Msa0173500:CDS | 55.0% | |
| !! | AGTTTCCGGTGCTACACCGA+CGG | + | chr1_4:58792170-58792189 | None:intergenic | 55.0% |
| TCTCTCCTCGAACTCGAACC+CGG | - | chr1_4:58792202-58792221 | Msa0173500:intron | 55.0% | |
| TCGAGATTCACCGGTGAACC+GGG | + | chr1_4:58792223-58792242 | None:intergenic | 55.0% | |
| ACTCCGGTGAGTAGAATGGG+TGG | - | chr1_4:58792253-58792272 | Msa0173500:intron | 55.0% | |
| TCAAGGTCACGTGGATGGCA+CGG | - | chr1_4:58792285-58792304 | Msa0173500:intron | 55.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | + | chr1_4:58791933-58791952 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | + | chr1_4:58791936-58791955 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | + | chr1_4:58791945-58791964 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | - | chr1_4:58792025-58792044 | Msa0173500:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | + | chr1_4:58792113-58792132 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | + | chr1_4:58792210-58792229 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | - | chr1_4:58792210-58792229 | Msa0173500:intron | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | - | chr1_4:58792286-58792305 | Msa0173500:intron | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | - | chr1_4:58792287-58792306 | Msa0173500:intron | 60.0% | |
| !! | GAGAGTGATGGGTTTGCGGG+TGG | + | chr1_4:58791933-58791952 | None:intergenic | 60.0% |
| !! | GCGGAGAGTGATGGGTTTGC+GGG | + | chr1_4:58791936-58791955 | None:intergenic | 60.0% |
| GGCGTTAGTGCGGAGAGTGA+TGG | + | chr1_4:58791945-58791964 | None:intergenic | 60.0% | |
| CTCGGCGAATCTCCTAACGG+CGG | - | chr1_4:58792025-58792044 | Msa0173500:CDS | 60.0% | |
| ! | GGTGAGGCATGTGCCGTTGA+CGG | + | chr1_4:58792113-58792132 | None:intergenic | 60.0% |
| ! | GTGAACCGGGTTCGAGTTCG+AGG | + | chr1_4:58792210-58792229 | None:intergenic | 60.0% |
| CGAACTCGAACCCGGTTCAC+CGG | - | chr1_4:58792210-58792229 | Msa0173500:intron | 60.0% | |
| CAAGGTCACGTGGATGGCAC+GGG | - | chr1_4:58792286-58792305 | Msa0173500:intron | 60.0% | |
| AAGGTCACGTGGATGGCACG+GGG | - | chr1_4:58792287-58792306 | Msa0173500:intron | 60.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | + | chr1_4:58792077-58792096 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | + | chr1_4:58792096-58792115 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | - | chr1_4:58792097-58792116 | Msa0173500:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | - | chr1_4:58792288-58792307 | Msa0173500:intron | 65.0% | |
| AAGGCTGACGCCGTCGAGGA+CGG | + | chr1_4:58792077-58792096 | None:intergenic | 65.0% | |
| TGACGGCGATGCTGTCGCCA+AGG | + | chr1_4:58792096-58792115 | None:intergenic | 65.0% | |
| GGCGACAGCATCGCCGTCAA+CGG | - | chr1_4:58792097-58792116 | Msa0173500:CDS | 65.0% | |
| AGGTCACGTGGATGGCACGG+GGG | - | chr1_4:58792288-58792307 | Msa0173500:intron | 65.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | - | chr1_4:58792076-58792095 | Msa0173500:CDS | 70.0% | |
| GTCCTCGACGGCGTCAGCCT+TGG | - | chr1_4:58792076-58792095 | Msa0173500:CDS | 70.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | + | chr1_4:58792081-58792100 | None:intergenic | 75.0% | |
| CGCCAAGGCTGACGCCGTCG+AGG | + | chr1_4:58792081-58792100 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58791815 | 58793638 | 58791815 | ID=Msa0173500;Name=Msa0173500 |
| chr1_4 | mRNA | 58791815 | 58793638 | 58791815 | ID=Msa0173500-mRNA-1;Parent=Msa0173500;Name=Msa0173500-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|1|0.66|3|0|369 |
| chr1_4 | exon | 58792997 | 58793638 | 58792997 | ID=Msa0173500-mRNA-1:exon:18345;Parent=Msa0173500-mRNA-1 |
| chr1_4 | exon | 58792319 | 58792402 | 58792319 | ID=Msa0173500-mRNA-1:exon:18344;Parent=Msa0173500-mRNA-1 |
| chr1_4 | exon | 58791815 | 58792195 | 58791815 | ID=Msa0173500-mRNA-1:exon:18343;Parent=Msa0173500-mRNA-1 |
| chr1_4 | CDS | 58792997 | 58793638 | 58792997 | ID=Msa0173500-mRNA-1:cds;Parent=Msa0173500-mRNA-1 |
| chr1_4 | CDS | 58792319 | 58792402 | 58792319 | ID=Msa0173500-mRNA-1:cds;Parent=Msa0173500-mRNA-1 |
| chr1_4 | CDS | 58791815 | 58792195 | 58791815 | ID=Msa0173500-mRNA-1:cds;Parent=Msa0173500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
