AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174310 MtrunA17_Chr1g0194841 96.471 765 27 0 1 765 1 765 0.0 1538
Msa0174310 MtrunA17_Chr7g0269871 81.961 765 135 2 3 765 8 771 0.0 1318
Msa0174310 MtrunA17_Chr2g0294751 68.538 766 224 7 5 764 7 761 0.0 1080
Msa0174310 MtrunA17_Chr2g0278761 56.562 762 319 5 4 756 16 774 0.0 896
Msa0174310 MtrunA17_Chr4g0050591 56.671 757 316 5 8 755 19 772 0.0 887
Msa0174310 MtrunA17_Chr1g0207281 53.473 763 332 7 2 747 19 775 0.0 820
Msa0174310 MtrunA17_Chr5g0411571 46.991 781 380 11 3 756 8 781 0.0 754
Msa0174310 MtrunA17_Chr3g0115601 48.516 775 366 12 5 755 9 774 0.0 746
Msa0174310 MtrunA17_Chr5g0425471 46.887 787 373 12 3 755 5 780 0.0 726
Msa0174310 MtrunA17_Chr5g0425431 46.515 789 377 12 1 755 1 778 0.0 722
Msa0174310 MtrunA17_Chr5g0425451 46.717 792 377 12 3 760 5 785 0.0 717
Msa0174310 MtrunA17_Chr5g0425531 45.408 784 385 14 5 755 10 783 0.0 701
Msa0174310 MtrunA17_Chr3g0104081 24.588 667 372 29 27 621 12 619 2.05e-33 136
Msa0174310 MtrunA17_Chr6g0461231 25.401 685 367 26 9 618 6 621 5.76e-33 135
Msa0174310 MtrunA17_Chr5g0429581 26.527 573 322 26 81 618 93 601 1.47e-31 130
Msa0174310 MtrunA17_Chr6g0461221 23.894 678 364 26 23 618 15 622 2.95e-31 130
Msa0174310 MtrunA17_Chr6g0461191 24.387 693 368 27 4 618 7 621 3.24e-30 127
Msa0174310 MtrunA17_Chr7g0253561 24.186 645 361 27 44 618 11 597 6.37e-28 119
Msa0174310 MtrunA17_Chr6g0461211 23.609 665 362 26 33 618 24 621 1.34e-27 119
Msa0174310 MtrunA17_Chr3g0118971 23.569 594 362 22 42 574 33 595 5.56e-25 110
Msa0174310 MtrunA17_Chr2g0292341 23.500 600 353 21 43 574 36 597 8.57e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174310 AT1G02640.1 73.368 766 197 3 3 765 7 768 0.0 1184
Msa0174310 AT5G49360.1 69.974 766 217 9 2 758 12 773 0.0 1082
Msa0174310 AT5G64570.1 58.562 765 300 7 5 756 23 783 0.0 910
Msa0174310 AT5G09730.1 56.604 742 309 6 23 755 34 771 0.0 866
Msa0174310 AT3G19620.1 55.541 740 316 5 18 747 22 758 0.0 864
Msa0174310 AT5G64570.2 59.141 629 244 5 137 756 1 625 0.0 768
Msa0174310 AT5G64570.3 63.811 572 198 5 5 569 23 592 0.0 740
Msa0174310 AT5G10560.1 45.477 796 386 10 3 756 2 791 0.0 731
Msa0174310 AT1G78060.1 47.177 744 368 10 22 748 23 758 0.0 730
Msa0174310 AT5G09700.1 53.862 479 212 4 279 751 45 520 0.0 529
Msa0174310 AT3G47000.1 26.711 599 336 23 43 574 16 578 3.38e-36 145
Msa0174310 AT3G47050.1 26.151 608 330 24 43 576 16 578 1.88e-34 140
Msa0174310 AT3G47040.4 23.231 650 370 26 43 621 16 607 1.64e-32 134
Msa0174310 AT3G47010.1 24.463 605 346 25 43 576 17 581 5.76e-31 129
Msa0174310 AT3G47010.2 23.881 603 351 23 43 576 17 580 4.44e-30 126
Msa0174310 AT3G47000.3 28.205 429 235 17 43 417 16 425 1.59e-28 120
Msa0174310 AT3G62710.1 25.627 558 321 24 102 617 143 648 3.32e-28 121
Msa0174310 AT3G47040.1 22.370 675 370 27 43 621 16 632 4.72e-28 120
Msa0174310 AT5G04885.2 24.613 646 361 23 2 574 21 613 1.26e-27 119
Msa0174310 AT5G04885.3 24.883 643 363 22 2 574 4 596 1.50e-27 119
Msa0174310 AT5G04885.1 24.883 643 363 22 2 574 4 596 1.50e-27 119
Msa0174310 AT3G47040.3 25.874 429 245 17 43 417 16 425 1.97e-25 110
Msa0174310 AT5G20950.2 24.424 651 369 28 35 618 24 618 2.97e-25 112
Msa0174310 AT5G20950.1 24.424 651 369 28 35 618 24 618 2.97e-25 112
Msa0174310 AT5G20950.3 24.349 653 367 28 35 618 102 696 3.19e-25 112
Msa0174310 AT3G47010.4 25.951 447 256 18 43 434 17 443 1.37e-24 108
Msa0174310 AT3G47000.2 26.464 427 254 17 180 574 3 401 1.06e-21 99.4
Msa0174310 AT5G20940.1 23.124 653 384 23 31 617 21 621 2.90e-21 99.4
Msa0174310 AT3G47040.2 22.672 494 295 20 164 621 198 640 2.69e-20 96.3
Msa0174310 AT3G47010.3 24.088 411 256 15 190 576 24 402 7.27e-20 93.6
Msa0174310 AT3G47050.2 25.676 370 199 12 43 356 16 365 7.14e-19 90.1

Find 243 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCTTATGATCTTGATAAT+TGG 0.169250 1_4:-59930932 Msa0174310:CDS
ATCTTCTTGTCTTTCCAAAA+TGG 0.183482 1_4:-59931653 Msa0174310:exon
GTGTAACTAGCCTGCTTTAA+TGG 0.213949 1_4:+59930346 None:intergenic
GATGAGGATTGAATCCATTT+TGG 0.215803 1_4:+59931639 None:intergenic
GCGTATTTACCTGCTAAAAT+TGG 0.222006 1_4:+59931029 None:intergenic
TGCTTCATGTAAACACTTTA+CGG 0.252478 1_4:-59930952 Msa0174310:CDS
ACACGTTCAATGTGCCATTT+AGG 0.256161 1_4:-59930672 Msa0174310:CDS
AATCTAATATGTTCTGTCTT+TGG 0.259663 1_4:+59928059 None:intergenic
TGTTCTTACAATCAGGTTAA+TGG 0.264019 1_4:-59930613 Msa0174310:CDS
TGCAATGATGATAAGCAATT+TGG 0.274323 1_4:-59929524 Msa0174310:CDS
TTGAGTGTGGTTGATAAGTC+TGG 0.284224 1_4:-59928241 Msa0174310:CDS
GTAGGGGTTGTTGCAATTCT+TGG 0.292546 1_4:-59928006 Msa0174310:three_prime_UTR
AACATCAATGTCAAGTCTAA+TGG 0.302466 1_4:+59928432 None:intergenic
TGTAATTGTAAGATTGATAA+TGG 0.306789 1_4:-59927817 Msa0174310:three_prime_UTR
ACCGGAACTGACACCACTTT+TGG 0.310123 1_4:+59928529 None:intergenic
TCCTTCACACACATCCTAAA+TGG 0.313797 1_4:+59930658 None:intergenic
CAAACATTCCTAACCTCATT+TGG 0.313898 1_4:+59930098 None:intergenic
CTCGAGAGGCCCAACCATTT+TGG 0.326495 1_4:-59929357 Msa0174310:CDS
TTCTAAATAATCTCAATATA+TGG 0.327660 1_4:-59928088 Msa0174310:three_prime_UTR
GAAGATGAGTGTATAGGTTT+TGG 0.328073 1_4:+59931670 None:intergenic
GCATGCCACATTCGCACAAC+CGG 0.335024 1_4:+59929544 None:intergenic
ATTCTTGGAGAAGAGATTAT+AGG 0.342911 1_4:-59927991 Msa0174310:three_prime_UTR
AACAGACAGTAGTCGGTTAA+AGG 0.343289 1_4:-59930979 Msa0174310:CDS
GCATCGGCAGCAGCTTCTTC+TGG 0.347935 1_4:+59930368 None:intergenic
GAATGGCTGGGTTGACATAC+TGG 0.348172 1_4:-59931118 Msa0174310:CDS
AGCTAGTGGCAGCTGGGAAT+TGG 0.353343 1_4:+59931335 None:intergenic
GATTGTTACAGGTTTGGATT+TGG 0.354260 1_4:-59930221 Msa0174310:intron
AGGACTGGTTTACTTCTTCC+TGG 0.354806 1_4:-59929416 Msa0174310:CDS
TCATTCACCCTTGTTGGTAT+AGG 0.360034 1_4:+59931508 None:intergenic
TTGGCAAAAGTTATATCTAT+AGG 0.361321 1_4:+59929317 None:intergenic
ACAAGTCCACTACAAGGAAT+AGG 0.363402 1_4:-59929593 Msa0174310:CDS
TTAACCGAAACTGATGTAAA+TGG 0.366495 1_4:-59930145 Msa0174310:CDS
AGCACCATTTACATCAGTTT+CGG 0.369750 1_4:+59930141 None:intergenic
AATTGTTCCCTTTAGAAGAT+TGG 0.370516 1_4:+59930570 None:intergenic
TGGCCACCAAACTTAGTTCC+TGG 0.373919 1_4:+59931355 None:intergenic
ATTGTTCCCTTTAGAAGATT+GGG 0.374956 1_4:+59930571 None:intergenic
GGCAGTGATGCCTTGCAAAA+TGG 0.376149 1_4:+59931529 None:intergenic
CATCGTACTGTGGCAGTCAT+TGG 0.380479 1_4:-59929926 Msa0174310:CDS
GTCTTGTGGGCTGGTTATCC+TGG 0.387757 1_4:-59929272 Msa0174310:CDS
TACAATTCGAGGATCATTCT+TGG 0.388170 1_4:+59929298 None:intergenic
CAAGTCCACTACAAGGAATA+GGG 0.388588 1_4:-59929592 Msa0174310:CDS
GCCATTGCGGATATATTGTT+TGG 0.389650 1_4:-59929233 Msa0174310:CDS
CGTGGTCAATGGCGTCTTGA+TGG 0.393875 1_4:-59930547 Msa0174310:CDS
ACCAGTCCTATCTACCATTT+CGG 0.395118 1_4:+59929430 None:intergenic
CTGTAGTCCTCTCACATAAC+TGG 0.401956 1_4:+59931004 None:intergenic
AGTGACAGTAGCATTAGAAT+TGG 0.406208 1_4:+59929901 None:intergenic
GCTTCCTTGTGGGAAGCAAT+TGG 0.410013 1_4:-59931277 Msa0174310:CDS
TTCATTCAATGCTTCCTTGT+GGG 0.412773 1_4:-59931287 Msa0174310:CDS
GTAGTGTATCCATTTGGTTA+TGG 0.416901 1_4:-59928592 Msa0174310:CDS
TGTGATGTGTTCTTACAATC+AGG 0.419127 1_4:-59930620 Msa0174310:CDS
TGAGGGAAGCTAGTGGCAGC+TGG 0.425971 1_4:+59931328 None:intergenic
ACCAGACATTAAGACCAAAA+TGG 0.427459 1_4:+59929343 None:intergenic
ATGTACAACGGAGGAATGGC+TGG 0.431552 1_4:-59931131 Msa0174310:CDS
AAGAATGATCCTCGAATTGT+AGG 0.432895 1_4:-59929296 Msa0174310:CDS
CCCACGATGGGGTCGTGGAC+AGG 0.434758 1_4:-59931069 Msa0174310:CDS
GTGGGACCAGGAACTAAGTT+TGG 0.438000 1_4:-59931361 Msa0174310:CDS
CTGCTGCGGTTCCAAGGGTT+GGG 0.439330 1_4:-59931432 Msa0174310:CDS
AGATGGTACTAACACTTTGT+TGG 0.445284 1_4:-59928392 Msa0174310:CDS
ATGAGGTCATTCACCCTTGT+TGG 0.447171 1_4:+59931502 None:intergenic
GCAAAATGGTAATTTCTTTG+TGG 0.447776 1_4:+59931543 None:intergenic
CACCAGCAGGTAATGGTCAA+TGG 0.449857 1_4:-59928357 Msa0174310:CDS
TATCAGATTGTGATTCTGTT+GGG 0.449866 1_4:-59930424 Msa0174310:CDS
TGGTGGTCAGAGGCACTTCA+TGG 0.450444 1_4:-59931394 Msa0174310:CDS
CAGTTATGTGAGAGGACTAC+AGG 0.452877 1_4:-59931003 Msa0174310:CDS
AGACAAGAAGATGAGTGTAT+AGG 0.455004 1_4:+59931664 None:intergenic
GCTGCTGCGGTTCCAAGGGT+TGG 0.456048 1_4:-59931433 Msa0174310:CDS
CCTTGTGGGTACCATGTCAT+AGG 0.459058 1_4:+59928709 None:intergenic
AAGGTTGACATTGCAAGAAA+AGG 0.459521 1_4:-59931476 Msa0174310:CDS
AGCTCATCCACAGGGTACCC+TGG 0.460856 1_4:-59928643 Msa0174310:CDS
ATCCGCAATGGCAGCACCAC+CGG 0.461366 1_4:+59929244 None:intergenic
AACAGTAGCATCCGCTTGAC+GGG 0.464308 1_4:+59929484 None:intergenic
CTCGAATTGTAGGCGTCTTG+TGG 0.466486 1_4:-59929286 Msa0174310:CDS
TGCTGACCCCAATCTTCTAA+AGG 0.467676 1_4:-59930578 Msa0174310:CDS
TATTTCCCTATTCCTTGTAG+TGG 0.467699 1_4:+59929587 None:intergenic
ACCAAAAGTGGTGTCAGTTC+CGG 0.469643 1_4:-59928530 Msa0174310:CDS
ATTGTAGGCGTCTTGTGGGC+TGG 0.469900 1_4:-59929281 Msa0174310:CDS
ACAGGTTTGGATTTGGATTG+TGG 0.471236 1_4:-59930214 Msa0174310:intron
GTCTATGTTACGATTAATGT+AGG 0.471767 1_4:-59927866 Msa0174310:three_prime_UTR
TCAGTCAATTGAGGCCGAAA+TGG 0.474480 1_4:-59929444 Msa0174310:CDS
GAGCCATCTGCTCAACCATA+TGG 0.476202 1_4:-59930070 Msa0174310:CDS
TTGAGGCCGAAATGGTAGAT+AGG 0.476400 1_4:-59929436 Msa0174310:CDS
GTGACAGTAGCATTAGAATT+GGG 0.478045 1_4:+59929902 None:intergenic
AAACAGTAGCATCCGCTTGA+CGG 0.478524 1_4:+59929483 None:intergenic
AGAGCTAAGTCTTGGTGAGT+TGG 0.479019 1_4:+59930019 None:intergenic
ACCAGCAGGTAATGGTCAAT+GGG 0.486567 1_4:-59928356 Msa0174310:CDS
ATTAGCTAGTGCACCAAAAG+TGG 0.486967 1_4:-59928542 Msa0174310:CDS
CTTACAGTCCAAATGAGGTT+AGG 0.488722 1_4:-59930106 Msa0174310:CDS
ACAATGCTGCTGCGGTTCCA+AGG 0.489142 1_4:-59931438 Msa0174310:CDS
CTTCTAAAGGGAACAATTCG+TGG 0.489838 1_4:-59930565 Msa0174310:CDS
ACGATCAAATAATGTATGGT+AGG 0.490949 1_4:-59928024 Msa0174310:three_prime_UTR
GGCCCGGTAGTGTATCCATT+TGG 0.492155 1_4:-59928598 Msa0174310:CDS
GTTGGACCAAGGTTGCCATA+TGG 0.493410 1_4:+59930055 None:intergenic
TTGCCATATGGTTGAGCAGA+TGG 0.494209 1_4:+59930067 None:intergenic
GGACTGGTTTACTTCTTCCT+GGG 0.495062 1_4:-59929415 Msa0174310:CDS
AATGACGATCAAATAATGTA+TGG 0.495651 1_4:-59928028 Msa0174310:three_prime_UTR
TAAGATAATCCATAACCAAA+TGG 0.495998 1_4:+59928583 None:intergenic
CTTCATTCAATGCTTCCTTG+TGG 0.497472 1_4:-59931288 Msa0174310:CDS
CGATCAAATAATGTATGGTA+GGG 0.498376 1_4:-59928023 Msa0174310:three_prime_UTR
CTTTGTTTGTGCTATTTCCA+CGG 0.499987 1_4:+59928494 None:intergenic
CCACGGCGGTGGCCGTCTAC+CGG 0.500155 1_4:+59928511 None:intergenic
ACTCGTTGCTGAGCCTTAGC+AGG 0.500218 1_4:+59928292 None:intergenic
GCTGCCGATGCCATTAAAGC+AGG 0.502258 1_4:-59930356 Msa0174310:intron
CACAAGACGCCTACAATTCG+AGG 0.502278 1_4:+59929287 None:intergenic
TTGTGCTATTTCCACGGCGG+TGG 0.502846 1_4:+59928500 None:intergenic
CTGGTGTTGATGTATAATGT+TGG 0.502939 1_4:+59930387 None:intergenic
AGGGAACAATTCGTGGTCAA+TGG 0.503217 1_4:-59930558 Msa0174310:CDS
CGAGCCCGGTTGTGCGAATG+TGG 0.504050 1_4:-59929549 Msa0174310:CDS
TCGAATTGTAGGCGTCTTGT+GGG 0.504658 1_4:-59929285 Msa0174310:CDS
TGCTAAAATTGGATCCTCAC+CGG 0.505969 1_4:+59931040 None:intergenic
ACTATGATCGGCAACTATGC+TGG 0.508582 1_4:-59929881 Msa0174310:intron
GTGGTCAATGGCGTCTTGAT+GGG 0.510313 1_4:-59930546 Msa0174310:intron
GTATCAGATTGTGATTCTGT+TGG 0.511438 1_4:-59930425 Msa0174310:CDS
GGGTACCCTGTGGATGAGCT+TGG 0.513477 1_4:+59928646 None:intergenic
ACAAGGTCTTGTTGATGCCC+AGG 0.514789 1_4:+59929398 None:intergenic
GCTGACCCCAATCTTCTAAA+GGG 0.516568 1_4:-59930577 Msa0174310:CDS
GTTCCAAGGGTTGGGATCAA+AGG 0.517619 1_4:-59931424 Msa0174310:CDS
CAGCTTCAAGAGCTAAGTCT+TGG 0.517691 1_4:+59930011 None:intergenic
GACATTAAGACCAAAATGGT+TGG 0.518340 1_4:+59929347 None:intergenic
TAACCAAATGGATACACTAC+CGG 0.520324 1_4:+59928595 None:intergenic
ACATTAAGACCAAAATGGTT+GGG 0.522088 1_4:+59929348 None:intergenic
TGAGTGTGGTTGATAAGTCT+GGG 0.522755 1_4:-59928240 Msa0174310:CDS
GCTGGTTATCCTGGTCAAGC+CGG 0.527403 1_4:-59929263 Msa0174310:CDS
TTTCTCCTTCTCTTATTGAG+TGG 0.531540 1_4:-59931607 Msa0174310:CDS
TAACCTTTGATCCCAACCCT+TGG 0.532115 1_4:+59931421 None:intergenic
CAACGGTGGTGATGACTTGA+GGG 0.533858 1_4:+59931311 None:intergenic
AATGCTACTGTCACTATGAT+CGG 0.536100 1_4:-59929893 Msa0174310:CDS
GCTCTTGAAGCTGCAAGACA+AGG 0.536337 1_4:-59930001 Msa0174310:CDS
TCAGTACCACCAGCAGGTAA+TGG 0.536648 1_4:-59928364 Msa0174310:CDS
TCATTACAAACCTGGGTTAG+CGG 0.538786 1_4:+59929208 None:intergenic
ACAAGGGTGAATGACCTCAT+TGG 0.540784 1_4:-59931499 Msa0174310:CDS
TGTTGATGTATAATGTTGGT+TGG 0.540874 1_4:+59930391 None:intergenic
TCGCTTTCACTTTAATGCAA+AGG 0.541204 1_4:-59930898 Msa0174310:intron
TCAACAAGACCTTGTTTCAA+AGG 0.542357 1_4:-59929390 Msa0174310:CDS
ATGAGGTTAGGAATGTTTGA+TGG 0.546650 1_4:-59930094 Msa0174310:CDS
CCTTGTGGGAAGCAATTGGA+CGG 0.549327 1_4:-59931273 Msa0174310:CDS
GCTCATCCACAGGGTACCCT+GGG 0.549425 1_4:-59928642 Msa0174310:CDS
GCTAAAATTGGATCCTCACC+GGG 0.551060 1_4:+59931041 None:intergenic
CCTTCTCTTATTGAGTGGTG+AGG 0.551148 1_4:-59931602 Msa0174310:CDS
AGACCTTGTTTCAAAGGTAG+CGG 0.551793 1_4:-59929384 Msa0174310:CDS
CCTGTCCACGACCCCATCGT+GGG 0.553753 1_4:+59931069 None:intergenic
AGGTTGCATCAGACGAAGCA+AGG 0.553887 1_4:-59931157 Msa0174310:CDS
GAAAGTCTATGTTCCTGCTA+AGG 0.555151 1_4:-59928305 Msa0174310:CDS
CATGCCACATTCGCACAACC+GGG 0.556110 1_4:+59929545 None:intergenic
CAAATATGATGAACATCGTA+AGG 0.556163 1_4:+59927728 None:intergenic
AGGGACCCACGATGGGGTCG+TGG 0.557616 1_4:-59931074 Msa0174310:CDS
GCTCAACCATATGGCAACCT+TGG 0.559431 1_4:-59930061 Msa0174310:CDS
AGCTAATGTGTGAACAAAGT+TGG 0.559505 1_4:+59928558 None:intergenic
TGGGTATGTTGTGCAAGGAA+AGG 0.559911 1_4:+59930190 None:intergenic
GCAGCACCACCGGCTTGACC+AGG 0.560968 1_4:+59929254 None:intergenic
GGCAATGTACAACGGAGGAA+TGG 0.561330 1_4:-59931135 Msa0174310:CDS
GATAATGGTAATAAACATGT+GGG 0.561408 1_4:-59927802 Msa0174310:three_prime_UTR
CTAGCCTGCTTTAATGGCAT+CGG 0.564008 1_4:+59930352 None:intergenic
AGCCGGTGGTGCTGCCATTG+CGG 0.565149 1_4:-59929246 Msa0174310:CDS
CTACATGCAGGTTAGCAAGC+AGG 0.567726 1_4:-59930704 Msa0174310:intron
ATGAGACCAAGCTCATCCAC+AGG 0.567760 1_4:-59928652 Msa0174310:CDS
AAGGTAGCGGCTGCCTCGAG+AGG 0.568465 1_4:-59929371 Msa0174310:CDS
GAGGGAAGCTAGTGGCAGCT+GGG 0.568859 1_4:+59931329 None:intergenic
ATCAGATTGTGATTCTGTTG+GGG 0.569005 1_4:-59930423 Msa0174310:CDS
TGATAATGGTAATAAACATG+TGG 0.572073 1_4:-59927803 Msa0174310:three_prime_UTR
CAATGCTGCTGCGGTTCCAA+GGG 0.573627 1_4:-59931437 Msa0174310:CDS
TTTAGAAGACATTCTAAATG+CGG 0.574761 1_4:+59928104 None:intergenic
GCCCATTGACCATTACCTGC+TGG 0.576424 1_4:+59928355 None:intergenic
CTTGTGGGAAGCAATTGGAC+GGG 0.577173 1_4:-59931272 Msa0174310:intron
ATTGTGCTTCTTAAGAACAC+TGG 0.577447 1_4:-59929977 Msa0174310:CDS
GCAGGTTAGCAAGCAGGACA+TGG 0.581137 1_4:-59930698 Msa0174310:intron
GATTGGGGTCAGCACAAGTA+GGG 0.582749 1_4:+59930587 None:intergenic
GCAAGGACTATTCACGAGCC+CGG 0.584280 1_4:-59929563 Msa0174310:CDS
TCACTTCAAGAACAAACACT+AGG 0.584597 1_4:-59928157 Msa0174310:CDS
AGATTGGGGTCAGCACAAGT+AGG 0.584959 1_4:+59930586 None:intergenic
CTTCATGGAGTTTCAAATGT+GGG 0.585312 1_4:-59931379 Msa0174310:CDS
TGGTTGATAAGTCTGGGACT+AGG 0.585602 1_4:-59928234 Msa0174310:CDS
GTGGTGTCAGTTCCGGTAGA+CGG 0.586306 1_4:-59928523 Msa0174310:CDS
AACCAAATGGATACACTACC+GGG 0.587998 1_4:+59928596 None:intergenic
TATGATCTTGATAATTGGAA+TGG 0.589003 1_4:-59930927 Msa0174310:CDS
CTCTTGAAGCTGCAAGACAA+GGG 0.591209 1_4:-59930000 Msa0174310:CDS
GGGACTAGGAGAATTCCAAT+GGG 0.591595 1_4:-59928220 Msa0174310:CDS
GCCGAAATGGTAGATAGGAC+TGG 0.592618 1_4:-59929431 Msa0174310:CDS
TCCTGTCCACGACCCCATCG+TGG 0.592950 1_4:+59931068 None:intergenic
TTGTTCCCTTTAGAAGATTG+GGG 0.593071 1_4:+59930572 None:intergenic
AAATGGTAATTTCTTTGTGG+AGG 0.593804 1_4:+59931546 None:intergenic
GGTCGTGGACAGGAGACTCC+CGG 0.595003 1_4:-59931059 Msa0174310:CDS
GGTTATCCTGGTCAAGCCGG+TGG 0.595636 1_4:-59929260 Msa0174310:CDS
CCGGTAGACGGCCACCGCCG+TGG 0.596564 1_4:-59928511 Msa0174310:CDS
TTTAGGATGTGTGTGAAGGA+AGG 0.597067 1_4:-59930655 Msa0174310:CDS
TGGGACTAGGAGAATTCCAA+TGG 0.597147 1_4:-59928221 Msa0174310:CDS
GGAGAAATACAATGGTGATG+AGG 0.597505 1_4:+59931623 None:intergenic
GGGATTGGATCAGTCAATTG+AGG 0.599415 1_4:-59929453 Msa0174310:CDS
GTGTTCTCAGTACCACCAGC+AGG 0.602373 1_4:-59928370 Msa0174310:CDS
GGAGTTTCAAATGTGGGACC+AGG 0.604839 1_4:-59931373 Msa0174310:CDS
TCCAAACAATATATCCGCAA+TGG 0.605705 1_4:+59929232 None:intergenic
TTGTTTGGAACCGCTAACCC+AGG 0.606167 1_4:-59929218 Msa0174310:intron
CAGCCGCTACCTTTGAAACA+AGG 0.607790 1_4:+59929381 None:intergenic
CCGTCCAATTGCTTCCCACA+AGG 0.609866 1_4:+59931273 None:intergenic
GATCAAATAATGTATGGTAG+GGG 0.610448 1_4:-59928022 Msa0174310:three_prime_UTR
ACACACTTACAGTCCAAATG+AGG 0.611542 1_4:-59930111 Msa0174310:CDS
GGACCAGGAACTAAGTTTGG+TGG 0.612020 1_4:-59931358 Msa0174310:CDS
TGATGATAAGCAATTTGGAT+CGG 0.613879 1_4:-59929519 Msa0174310:CDS
AAGGAATAGGGAAATATGCA+AGG 0.614564 1_4:-59929580 Msa0174310:CDS
CAAAATGGTTGGGCCTCTCG+AGG 0.619255 1_4:+59929358 None:intergenic
GCAACGGTGGTGATGACTTG+AGG 0.619522 1_4:+59931310 None:intergenic
AGGTTATGAGTGGTGGTCAG+AGG 0.619591 1_4:-59931404 Msa0174310:CDS
GGATCAAAGGTTATGAGTGG+TGG 0.620241 1_4:-59931411 Msa0174310:CDS
TACAGGGAACAGACAGTAGT+CGG 0.622154 1_4:-59930986 Msa0174310:CDS
CATCACTGCCTATACCAACA+AGG 0.622164 1_4:-59931516 Msa0174310:CDS
TCTAAATGCAGCCCGTCAAG+CGG 0.622520 1_4:-59929495 Msa0174310:CDS
GGATACACAAGTCCACTACA+AGG 0.624565 1_4:-59929599 Msa0174310:CDS
CCTCACCACTCAATAAGAGA+AGG 0.624741 1_4:+59931602 None:intergenic
GGTTGCATCAGACGAAGCAA+GGG 0.625975 1_4:-59931156 Msa0174310:CDS
GTGTGTGAAGGAAGGTAATG+TGG 0.627264 1_4:-59930647 Msa0174310:CDS
GGAAGCATTGAATGAAGCAA+CGG 0.628505 1_4:+59931294 None:intergenic
CTAAGGCTCAGCAACGAGTG+AGG 0.630458 1_4:-59928288 Msa0174310:CDS
GGGTGAATGACCTCATTGGA+AGG 0.631580 1_4:-59931495 Msa0174310:CDS
GTTGGAGTGCACACATCAGT+TGG 0.632858 1_4:+59930037 None:intergenic
TAAGAGAAGGAGAAATACAA+TGG 0.637514 1_4:+59931615 None:intergenic
ACTTCATGGAGTTTCAAATG+TGG 0.641554 1_4:-59931380 Msa0174310:CDS
AGTTATGTGAGAGGACTACA+GGG 0.641980 1_4:-59931002 Msa0174310:CDS
TGTACAACGGAGGAATGGCT+GGG 0.643008 1_4:-59931130 Msa0174310:CDS
ATCACTGCCTATACCAACAA+GGG 0.645073 1_4:-59931515 Msa0174310:CDS
CACTTCAAGAACAAACACTA+GGG 0.646984 1_4:-59928156 Msa0174310:CDS
GCCATTTAGGATGTGTGTGA+AGG 0.646990 1_4:-59930659 Msa0174310:CDS
TTGGGATCAAAGGTTATGAG+TGG 0.652242 1_4:-59931414 Msa0174310:CDS
CATTGACCATTACCTGCTGG+TGG 0.655851 1_4:+59928358 None:intergenic
TACGCTGCCAGTTATGTGAG+AGG 0.656249 1_4:-59931011 Msa0174310:CDS
AGACAGTAGTCGGTTAAAGG+TGG 0.660144 1_4:-59930976 Msa0174310:CDS
TGCACACATCAGTTGGACCA+AGG 0.660395 1_4:+59930044 None:intergenic
GGTTCTCCCAGGGTACCCTG+TGG 0.661497 1_4:+59928636 None:intergenic
TCTTGATAATTGGAATGGTG+TGG 0.662682 1_4:-59930922 Msa0174310:CDS
CCTATGACATGGTACCCACA+AGG 0.663844 1_4:-59928709 Msa0174310:CDS
GGCACCACAAAAGCAACTAG+TGG 0.674093 1_4:-59928335 Msa0174310:CDS
AGCATTGAATGAAGCAACGG+TGG 0.676069 1_4:+59931297 None:intergenic
GAGCTAAGTTACCTATGACA+TGG 0.679205 1_4:-59928720 Msa0174310:CDS
GGGGTACATAGTATTCACAT+TGG 0.680410 1_4:-59928199 Msa0174310:CDS
GAAGCAAGGGCAATGTACAA+CGG 0.684484 1_4:-59931143 Msa0174310:CDS
GCAATGTCAACCTTCCAATG+AGG 0.684875 1_4:+59931485 None:intergenic
AGAGTGACACATGCACGATG+TGG 0.689806 1_4:-59928463 Msa0174310:CDS
TGGACAGGAGACTCCCGGTG+AGG 0.696359 1_4:-59931054 Msa0174310:CDS
GTTAGTGAACAATGCTGCTG+CGG 0.699085 1_4:-59931446 Msa0174310:CDS
TGAGACCAAGCTCATCCACA+GGG 0.704245 1_4:-59928651 Msa0174310:CDS
GCAAGGGCAATGTACAACGG+AGG 0.707393 1_4:-59931140 Msa0174310:CDS
GACTAGGAGAATTCCAATGG+GGG 0.732630 1_4:-59928218 Msa0174310:CDS
GATGACTTGAGGGAAGCTAG+TGG 0.745072 1_4:+59931321 None:intergenic
TGTTTGTGCTATTTCCACGG+CGG 0.761693 1_4:+59928497 None:intergenic
GGACTAGGAGAATTCCAATG+GGG 0.764226 1_4:-59928219 Msa0174310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAAAAAAAAAA+AGG + chr1_4:59931466-59931485 None:intergenic 0.0%
!!! TTTTTTTTTTAAAAAAAAAA+AGG - chr1_4:59931465-59931484 Msa0174310:CDS 0.0%
!!! TTTTTTTAAAAAAAAAAAGG+AGG - chr1_4:59931468-59931487 Msa0174310:CDS 10.0%
!!! AAATCTTACTATATTTTCTT+TGG - chr1_4:59928949-59928968 Msa0174310:intron 15.0%
!! AAATATATCAACCATTAATT+AGG + chr1_4:59929170-59929189 None:intergenic 15.0%
!!! TTTTTTCGTTTTTGTTTTTT+AGG - chr1_4:59929782-59929801 Msa0174310:intron 15.0%
!!! TAATGAATCTATCTTTTTTA+AGG - chr1_4:59930223-59930242 Msa0174310:intron 15.0%
!!! AATGAATCTATCTTTTTTAA+GGG - chr1_4:59930224-59930243 Msa0174310:intron 15.0%
!!! TAGTTTTTAAGAAATTGTTT+GGG - chr1_4:59930352-59930371 Msa0174310:intron 15.0%
!!! CATTTATAATGTAGTTTTTT+AGG + chr1_4:59930436-59930455 None:intergenic 15.0%
!!! TTACTAGTTTTCTTTTTAAA+TGG - chr1_4:59930617-59930636 Msa0174310:CDS 15.0%
!! TTCTAAATAATCTCAATATA+TGG - chr1_4:59931326-59931345 Msa0174310:CDS 15.0%
!! GATTAAAATAGAAGAAATGT+GGG - chr1_4:59928636-59928655 Msa0174310:CDS 20.0%
!!! TATTTTCTTTGGTGTAATTT+AGG - chr1_4:59928960-59928979 Msa0174310:intron 20.0%
!!! ATATATTTGATGATTGTTAC+AGG - chr1_4:59929182-59929201 Msa0174310:intron 20.0%
!!! GTAGTTTTTAAGAAATTGTT+TGG - chr1_4:59930351-59930370 Msa0174310:intron 20.0%
!!! AGTTTTTAAGAAATTGTTTG+GGG - chr1_4:59930353-59930372 Msa0174310:intron 20.0%
!!! TTGCAAGAGTTTTATATAAA+AGG - chr1_4:59930566-59930585 Msa0174310:CDS 20.0%
!!! AAGAGTTTTATATAAAAGGA+GGG - chr1_4:59930570-59930589 Msa0174310:CDS 20.0%
!! TGTAATTGTAAGATTGATAA+TGG - chr1_4:59931597-59931616 Msa0174310:CDS 20.0%
!! AAAGAAATTACCATTTTGCA+AGG - chr1_4:59927875-59927894 Msa0174310:three_prime_UTR 25.0%
!! TTTTTCATTGATCTAACGTA+AGG - chr1_4:59928222-59928241 Msa0174310:CDS 25.0%
!! TTTTCATTGATCTAACGTAA+GGG - chr1_4:59928223-59928242 Msa0174310:CDS 25.0%
!! TCCAAATGTGAACATTTTTA+GGG - chr1_4:59928321-59928340 Msa0174310:CDS 25.0%
!! TATGATCTTGATAATTGGAA+TGG - chr1_4:59928487-59928506 Msa0174310:CDS 25.0%
!!! AAAGGTACCTTTTATGTTTA+TGG - chr1_4:59928534-59928553 Msa0174310:CDS 25.0%
! GTGTATACCATAAACATAAA+AGG + chr1_4:59928544-59928563 None:intergenic 25.0%
!! CACTTTTGTACTATGTAATA+TGG - chr1_4:59928581-59928600 Msa0174310:CDS 25.0%
!!! CATTTCTTCTATTTTAATCC+AGG + chr1_4:59928635-59928654 None:intergenic 25.0%
! GGATTAAAATAGAAGAAATG+TGG - chr1_4:59928635-59928654 Msa0174310:CDS 25.0%
! AAAACTAGGAACCTAATTAA+TGG - chr1_4:59929156-59929175 Msa0174310:intron 25.0%
! TTGGCAAAAGTTATATCTAT+AGG + chr1_4:59930100-59930119 None:intergenic 25.0%
!!! GAGCAATTTTTAAGAATCAT+AGG + chr1_4:59930262-59930281 None:intergenic 25.0%
!!! TAATGTTTTTTTCTTGTGTC+CGG + chr1_4:59930303-59930322 None:intergenic 25.0%
!!! CAAGAGTTTTATATAAAAGG+AGG - chr1_4:59930569-59930588 Msa0174310:CDS 25.0%
! TAAGATAATCCATAACCAAA+TGG + chr1_4:59930834-59930853 None:intergenic 25.0%
! GACATTGATGTTAAAAACAT+TGG - chr1_4:59930993-59931012 Msa0174310:CDS 25.0%
!!! AAAAACATTGGTTCAAAAGA+TGG - chr1_4:59931005-59931024 Msa0174310:CDS 25.0%
! TAGAAAAATTCAAGTCTTGA+TGG + chr1_4:59931285-59931304 None:intergenic 25.0%
!! TCAAGACTTGAATTTTTCTA+TGG - chr1_4:59931285-59931304 Msa0174310:CDS 25.0%
!! CAAGACTTGAATTTTTCTAT+GGG - chr1_4:59931286-59931305 Msa0174310:CDS 25.0%
!! AAGACTTGAATTTTTCTATG+GGG - chr1_4:59931287-59931306 Msa0174310:CDS 25.0%
! TTTAGAAGACATTCTAAATG+CGG + chr1_4:59931313-59931332 None:intergenic 25.0%
! AATCTAATATGTTCTGTCTT+TGG + chr1_4:59931358-59931377 None:intergenic 25.0%
! AATGACGATCAAATAATGTA+TGG - chr1_4:59931386-59931405 Msa0174310:CDS 25.0%
!!! TGATAATGGTAATAAACATG+TGG - chr1_4:59931611-59931630 Msa0174310:CDS 25.0%
!! GATAATGGTAATAAACATGT+GGG - chr1_4:59931612-59931631 Msa0174310:CDS 25.0%
ATCTTCTTGTCTTTCCAAAA+TGG - chr1_4:59927761-59927780 Msa0174310:three_prime_UTR 30.0%
TAAGAGAAGGAGAAATACAA+TGG + chr1_4:59927802-59927821 None:intergenic 30.0%
AAATGGTAATTTCTTTGTGG+AGG + chr1_4:59927871-59927890 None:intergenic 30.0%
GCAAAATGGTAATTTCTTTG+TGG + chr1_4:59927874-59927893 None:intergenic 30.0%
! GTCCAAATGTGAACATTTTT+AGG - chr1_4:59928320-59928339 Msa0174310:CDS 30.0%
TCCCTAAAAATGTTCACATT+TGG + chr1_4:59928325-59928344 None:intergenic 30.0%
TGCTTCATGTAAACACTTTA+CGG - chr1_4:59928462-59928481 Msa0174310:CDS 30.0%
TGGTATACACTTCTAGATAT+AGG - chr1_4:59928554-59928573 Msa0174310:CDS 30.0%
TGTTCTTACAATCAGGTTAA+TGG - chr1_4:59928801-59928820 Msa0174310:intron 30.0%
! ATTGTTCCCTTTAGAAGATT+GGG + chr1_4:59928846-59928865 None:intergenic 30.0%
! AATTGTTCCCTTTAGAAGAT+TGG + chr1_4:59928847-59928866 None:intergenic 30.0%
TATCAGATTGTGATTCTGTT+GGG - chr1_4:59928990-59929009 Msa0174310:intron 30.0%
TGTTGATGTATAATGTTGGT+TGG + chr1_4:59929026-59929045 None:intergenic 30.0%
CATCGTGTGTTCATATTTAT+TGG + chr1_4:59929114-59929133 None:intergenic 30.0%
TTCTTCGGCATAAAAAAACT+AGG - chr1_4:59929142-59929161 Msa0174310:intron 30.0%
! TTTGATGATTGTTACAGGTT+TGG - chr1_4:59929187-59929206 Msa0174310:intron 30.0%
!!! GGTTAACAAGCCTTTTTTAA+CGG + chr1_4:59929255-59929274 None:intergenic 30.0%
TTAACCGAAACTGATGTAAA+TGG - chr1_4:59929269-59929288 Msa0174310:CDS 30.0%
!!! TGTTTTTTAGGTATTGCTTG+TGG - chr1_4:59929794-59929813 Msa0174310:intron 30.0%
TGCAATGATGATAAGCAATT+TGG - chr1_4:59929890-59929909 Msa0174310:CDS 30.0%
TGATGATAAGCAATTTGGAT+CGG - chr1_4:59929895-59929914 Msa0174310:CDS 30.0%
ACATTAAGACCAAAATGGTT+GGG + chr1_4:59930069-59930088 None:intergenic 30.0%
GATAGATTCATTACAAACCT+GGG + chr1_4:59930216-59930235 None:intergenic 30.0%
AGATAGATTCATTACAAACC+TGG + chr1_4:59930217-59930236 None:intergenic 30.0%
! TAAGAAATTGTTTGGGGTAA+AGG - chr1_4:59930359-59930378 Msa0174310:CDS 30.0%
!! AGTTTTATATAAAAGGAGGG+AGG - chr1_4:59930573-59930592 Msa0174310:CDS 30.0%
! AGGGAGGTAGTAAAAATTTT+TGG - chr1_4:59930589-59930608 Msa0174310:CDS 30.0%
! TTTGCTACTGTTCAATTTTC+AGG - chr1_4:59930672-59930691 Msa0174310:CDS 30.0%
!!! AGTTTTTAAGGTATCCTTGT+GGG + chr1_4:59930722-59930741 None:intergenic 30.0%
!!! AAGTTTTTAAGGTATCCTTG+TGG + chr1_4:59930723-59930742 None:intergenic 30.0%
ACAAGGATACCTTAAAAACT+TGG - chr1_4:59930722-59930741 Msa0174310:intron 30.0%
!! AGAACCTATCGTTTTTACAA+TGG - chr1_4:59930795-59930814 Msa0174310:intron 30.0%
AACATCAATGTCAAGTCTAA+TGG + chr1_4:59930985-59931004 None:intergenic 30.0%
ACGATCAAATAATGTATGGT+AGG - chr1_4:59931390-59931409 Msa0174310:CDS 30.0%
CGATCAAATAATGTATGGTA+GGG - chr1_4:59931391-59931410 Msa0174310:CDS 30.0%
GATCAAATAATGTATGGTAG+GGG - chr1_4:59931392-59931411 Msa0174310:CDS 30.0%
ATTCTTGGAGAAGAGATTAT+AGG - chr1_4:59931423-59931442 Msa0174310:CDS 30.0%
CGTAACATAGACAAAAAGAA+TGG + chr1_4:59931540-59931559 None:intergenic 30.0%
GTCTATGTTACGATTAATGT+AGG - chr1_4:59931548-59931567 Msa0174310:CDS 30.0%
!! ATGAGTGTATAGGTTTTGGT+GGG + chr1_4:59927743-59927762 None:intergenic 35.0%
! GAAGATGAGTGTATAGGTTT+TGG + chr1_4:59927747-59927766 None:intergenic 35.0%
AGACAAGAAGATGAGTGTAT+AGG + chr1_4:59927753-59927772 None:intergenic 35.0%
! GATGAGGATTGAATCCATTT+TGG + chr1_4:59927778-59927797 None:intergenic 35.0%
TTTCTCCTTCTCTTATTGAG+TGG - chr1_4:59927807-59927826 Msa0174310:three_prime_UTR 35.0%
!!! TTTTTGGGTCACATGCAAAA+GGG + chr1_4:59927845-59927864 None:intergenic 35.0%
!!! TTTTTTGGGTCACATGCAAA+AGG + chr1_4:59927846-59927865 None:intergenic 35.0%
!!! TCTTTGTGGAGGTGTTTTTT+GGG + chr1_4:59927860-59927879 None:intergenic 35.0%
!!! TTCTTTGTGGAGGTGTTTTT+TGG + chr1_4:59927861-59927880 None:intergenic 35.0%
AAGGTTGACATTGCAAGAAA+AGG - chr1_4:59927938-59927957 Msa0174310:three_prime_UTR 35.0%
ACTTCATGGAGTTTCAAATG+TGG - chr1_4:59928034-59928053 Msa0174310:three_prime_UTR 35.0%
CTTCATGGAGTTTCAAATGT+GGG - chr1_4:59928035-59928054 Msa0174310:three_prime_UTR 35.0%
TTCATTCAATGCTTCCTTGT+GGG - chr1_4:59928127-59928146 Msa0174310:exon 35.0%
GCGTATTTACCTGCTAAAAT+TGG + chr1_4:59928388-59928407 None:intergenic 35.0%
! CGGCTTATGATCTTGATAAT+TGG - chr1_4:59928482-59928501 Msa0174310:CDS 35.0%
! TCTTGATAATTGGAATGGTG+TGG - chr1_4:59928492-59928511 Msa0174310:CDS 35.0%
TCGCTTTCACTTTAATGCAA+AGG - chr1_4:59928516-59928535 Msa0174310:CDS 35.0%
TGTGATGTGTTCTTACAATC+AGG - chr1_4:59928794-59928813 Msa0174310:intron 35.0%
! TTGTTCCCTTTAGAAGATTG+GGG + chr1_4:59928845-59928864 None:intergenic 35.0%
GTATCAGATTGTGATTCTGT+TGG - chr1_4:59928989-59929008 Msa0174310:intron 35.0%
ATCAGATTGTGATTCTGTTG+GGG - chr1_4:59928991-59929010 Msa0174310:intron 35.0%
!! CTGGTGTTGATGTATAATGT+TGG + chr1_4:59929030-59929049 None:intergenic 35.0%
! CACGATGATGCATTTTTCTT+CGG - chr1_4:59929127-59929146 Msa0174310:intron 35.0%
GATTGTTACAGGTTTGGATT+TGG - chr1_4:59929193-59929212 Msa0174310:intron 35.0%
ACCCAAAATGCCGTTAAAAA+AGG - chr1_4:59929242-59929261 Msa0174310:CDS 35.0%
!!! GCCTTTTTTAACGGCATTTT+GGG + chr1_4:59929246-59929265 None:intergenic 35.0%
!!! AGCCTTTTTTAACGGCATTT+TGG + chr1_4:59929247-59929266 None:intergenic 35.0%
AGCACCATTTACATCAGTTT+CGG + chr1_4:59929276-59929295 None:intergenic 35.0%
CAAACATTCCTAACCTCATT+TGG + chr1_4:59929319-59929338 None:intergenic 35.0%
ATGAGGTTAGGAATGTTTGA+TGG - chr1_4:59929320-59929339 Msa0174310:CDS 35.0%
ATTGTGCTTCTTAAGAACAC+TGG - chr1_4:59929437-59929456 Msa0174310:CDS 35.0%
GTGACAGTAGCATTAGAATT+GGG + chr1_4:59929515-59929534 None:intergenic 35.0%
AGTGACAGTAGCATTAGAAT+TGG + chr1_4:59929516-59929535 None:intergenic 35.0%
AATGCTACTGTCACTATGAT+CGG - chr1_4:59929521-59929540 Msa0174310:CDS 35.0%
ACAATTCAGACGTGCAAAAT+TGG - chr1_4:59929675-59929694 Msa0174310:intron 35.0%
CAATTCAGACGTGCAAAATT+GGG - chr1_4:59929676-59929695 Msa0174310:intron 35.0%
!!! ACACGTGTTTTGAGAAATGT+TGG - chr1_4:59929740-59929759 Msa0174310:intron 35.0%
!!! CACGTGTTTTGAGAAATGTT+GGG - chr1_4:59929741-59929760 Msa0174310:intron 35.0%
!!! TGTTTTGAGAAATGTTGGGA+GGG - chr1_4:59929745-59929764 Msa0174310:intron 35.0%
TATTTCCCTATTCCTTGTAG+TGG + chr1_4:59929830-59929849 None:intergenic 35.0%
AAGGAATAGGGAAATATGCA+AGG - chr1_4:59929834-59929853 Msa0174310:intron 35.0%
!!! GATGCTACTGTTTTAGTGAT+GGG - chr1_4:59929941-59929960 Msa0174310:CDS 35.0%
!!! TACTGTTTTAGTGATGGGAT+TGG - chr1_4:59929946-59929965 Msa0174310:CDS 35.0%
! TCAACAAGACCTTGTTTCAA+AGG - chr1_4:59930024-59930043 Msa0174310:CDS 35.0%
GACATTAAGACCAAAATGGT+TGG + chr1_4:59930070-59930089 None:intergenic 35.0%
!!! ACCATTTTGGTCTTAATGTC+TGG - chr1_4:59930070-59930089 Msa0174310:CDS 35.0%
ACCAGACATTAAGACCAAAA+TGG + chr1_4:59930074-59930093 None:intergenic 35.0%
!!! ATTTTGGTCTTAATGTCTGG+TGG - chr1_4:59930073-59930092 Msa0174310:CDS 35.0%
!!! TTTTGGTCTTAATGTCTGGT+GGG - chr1_4:59930074-59930093 Msa0174310:CDS 35.0%
TACAATTCGAGGATCATTCT+TGG + chr1_4:59930119-59930138 None:intergenic 35.0%
AAGAATGATCCTCGAATTGT+AGG - chr1_4:59930118-59930137 Msa0174310:CDS 35.0%
TCCAAACAATATATCCGCAA+TGG + chr1_4:59930185-59930204 None:intergenic 35.0%
TCTTAAAAATTGCTCCAGTC+CGG - chr1_4:59930267-59930286 Msa0174310:intron 35.0%
!!! TTTTTTTCTTGTGTCCGGAT+GGG + chr1_4:59930298-59930317 None:intergenic 35.0%
AAAAACTACGCTCATCAAGA+TGG + chr1_4:59930340-59930359 None:intergenic 35.0%
TATCTCTCAAAATGCACTCT+AGG - chr1_4:59930410-59930429 Msa0174310:CDS 35.0%
! CTGTCATTGCCAAGTTTTTA+AGG + chr1_4:59930734-59930753 None:intergenic 35.0%
TAACCAAATGGATACACTAC+CGG + chr1_4:59930822-59930841 None:intergenic 35.0%
GTAGTGTATCCATTTGGTTA+TGG - chr1_4:59930822-59930841 Msa0174310:intron 35.0%
AGCTAATGTGTGAACAAAGT+TGG + chr1_4:59930859-59930878 None:intergenic 35.0%
!! CTTTGTTTGTGCTATTTCCA+CGG + chr1_4:59930923-59930942 None:intergenic 35.0%
AGATGGTACTAACACTTTGT+TGG - chr1_4:59931022-59931041 Msa0174310:CDS 35.0%
!! TGTATGTAAGCTTTTGAGTG+TGG - chr1_4:59931160-59931179 Msa0174310:intron 35.0%
TCACTTCAAGAACAAACACT+AGG - chr1_4:59931257-59931276 Msa0174310:intron 35.0%
CACTTCAAGAACAAACACTA+GGG - chr1_4:59931258-59931277 Msa0174310:intron 35.0%
!! GATGAGTGTATAGGTTTTGG+TGG + chr1_4:59927744-59927763 None:intergenic 40.0%
! GGAGAAATACAATGGTGATG+AGG + chr1_4:59927794-59927813 None:intergenic 40.0%
ATCACTGCCTATACCAACAA+GGG - chr1_4:59927899-59927918 Msa0174310:three_prime_UTR 40.0%
TCATTCACCCTTGTTGGTAT+AGG + chr1_4:59927909-59927928 None:intergenic 40.0%
TTGGGATCAAAGGTTATGAG+TGG - chr1_4:59928000-59928019 Msa0174310:three_prime_UTR 40.0%
!! GGAAGCATTGAATGAAGCAA+CGG + chr1_4:59928123-59928142 None:intergenic 40.0%
CTTCATTCAATGCTTCCTTG+TGG - chr1_4:59928126-59928145 Msa0174310:exon 40.0%
ACGTAAGGGTAATAATGTGC+AGG - chr1_4:59928237-59928256 Msa0174310:CDS 40.0%
TGCTAAAATTGGATCCTCAC+CGG + chr1_4:59928377-59928396 None:intergenic 40.0%
AGTTATGTGAGAGGACTACA+GGG - chr1_4:59928412-59928431 Msa0174310:CDS 40.0%
AACAGACAGTAGTCGGTTAA+AGG - chr1_4:59928435-59928454 Msa0174310:CDS 40.0%
!! GATTACCAAAAGTGTTGGAC+TGG + chr1_4:59928613-59928632 None:intergenic 40.0%
!! TCCAACACTTTTGGTAATCC+TGG - chr1_4:59928614-59928633 Msa0174310:CDS 40.0%
! TCCAGGATTACCAAAAGTGT+TGG + chr1_4:59928618-59928637 None:intergenic 40.0%
ACTCATGTATGTCTACATGC+AGG - chr1_4:59928698-59928717 Msa0174310:CDS 40.0%
!! ACACGTTCAATGTGCCATTT+AGG - chr1_4:59928742-59928761 Msa0174310:intron 40.0%
TCCTTCACACACATCCTAAA+TGG + chr1_4:59928759-59928778 None:intergenic 40.0%
! TTTAGGATGTGTGTGAAGGA+AGG - chr1_4:59928759-59928778 Msa0174310:intron 40.0%
! CTTCTAAAGGGAACAATTCG+TGG - chr1_4:59928849-59928868 Msa0174310:intron 40.0%
! GTGTAACTAGCCTGCTTTAA+TGG + chr1_4:59929071-59929090 None:intergenic 40.0%
ACAGGTTTGGATTTGGATTG+TGG - chr1_4:59929200-59929219 Msa0174310:intron 40.0%
!! CATTTTGGGTATGTTGTGCA+AGG + chr1_4:59929232-59929251 None:intergenic 40.0%
ACACACTTACAGTCCAAATG+AGG - chr1_4:59929303-59929322 Msa0174310:CDS 40.0%
CTTACAGTCCAAATGAGGTT+AGG - chr1_4:59929308-59929327 Msa0174310:CDS 40.0%
! CACAGTACGATGATTTTTCG+TGG + chr1_4:59929480-59929499 None:intergenic 40.0%
CACGAAAAATCATCGTACTG+TGG - chr1_4:59929478-59929497 Msa0174310:CDS 40.0%
CATGTGCCTGCATAAAACAA+GGG + chr1_4:59929564-59929583 None:intergenic 40.0%
!!! CTTGTTTTATGCAGGCACAT+GGG - chr1_4:59929563-59929582 Msa0174310:CDS 40.0%
GATGCATGTTTCGATAAACG+TGG + chr1_4:59929642-59929661 None:intergenic 40.0%
! CTCAAAACACGTGTTTTGTC+TGG + chr1_4:59929734-59929753 None:intergenic 40.0%
!!! GTGTTTTGAGAAATGTTGGG+AGG - chr1_4:59929744-59929763 Msa0174310:intron 40.0%
!!! GTTTTGAGAAATGTTGGGAG+GGG - chr1_4:59929746-59929765 Msa0174310:intron 40.0%
ACAAGTCCACTACAAGGAAT+AGG - chr1_4:59929821-59929840 Msa0174310:intron 40.0%
CAAGTCCACTACAAGGAATA+GGG - chr1_4:59929822-59929841 Msa0174310:intron 40.0%
!!! GGATGCTACTGTTTTAGTGA+TGG - chr1_4:59929940-59929959 Msa0174310:CDS 40.0%
ACCAGTCCTATCTACCATTT+CGG + chr1_4:59929987-59930006 None:intergenic 40.0%
! AGACCTTGTTTCAAAGGTAG+CGG - chr1_4:59930030-59930049 Msa0174310:CDS 40.0%
GCCATTGCGGATATATTGTT+TGG - chr1_4:59930181-59930200 Msa0174310:CDS 40.0%
! TCATTACAAACCTGGGTTAG+CGG + chr1_4:59930209-59930228 None:intergenic 40.0%
!!! GTTTTTTTCTTGTGTCCGGA+TGG + chr1_4:59930299-59930318 None:intergenic 40.0%
GAGCTAAGTTACCTATGACA+TGG - chr1_4:59930694-59930713 Msa0174310:CDS 40.0%
AAAAACGATAGGTTCTCCCA+GGG + chr1_4:59930791-59930810 None:intergenic 40.0%
TAAAAACGATAGGTTCTCCC+AGG + chr1_4:59930792-59930811 None:intergenic 40.0%
!! CTATCGTTTTTACAATGGCC+CGG - chr1_4:59930800-59930819 Msa0174310:intron 40.0%
AACCAAATGGATACACTACC+GGG + chr1_4:59930821-59930840 None:intergenic 40.0%
ATTAGCTAGTGCACCAAAAG+TGG - chr1_4:59930872-59930891 Msa0174310:intron 40.0%
!!! AAAGCCACTAGTTGCTTTTG+TGG + chr1_4:59931086-59931105 None:intergenic 40.0%
GAAAGTCTATGTTCCTGCTA+AGG - chr1_4:59931109-59931128 Msa0174310:CDS 40.0%
!! TTGAGTGTGGTTGATAAGTC+TGG - chr1_4:59931173-59931192 Msa0174310:intron 40.0%
!! TGAGTGTGGTTGATAAGTCT+GGG - chr1_4:59931174-59931193 Msa0174310:intron 40.0%
TGAATACTATGTACCCCCAT+TGG + chr1_4:59931212-59931231 None:intergenic 40.0%
GGGGTACATAGTATTCACAT+TGG - chr1_4:59931215-59931234 Msa0174310:intron 40.0%
CCTCACCACTCAATAAGAGA+AGG + chr1_4:59927815-59927834 None:intergenic 45.0%
CCTTCTCTTATTGAGTGGTG+AGG - chr1_4:59927812-59927831 Msa0174310:three_prime_UTR 45.0%
CATCACTGCCTATACCAACA+AGG - chr1_4:59927898-59927917 Msa0174310:three_prime_UTR 45.0%
ATGAGGTCATTCACCCTTGT+TGG + chr1_4:59927915-59927934 None:intergenic 45.0%
ACAAGGGTGAATGACCTCAT+TGG - chr1_4:59927915-59927934 Msa0174310:three_prime_UTR 45.0%
GCAATGTCAACCTTCCAATG+AGG + chr1_4:59927932-59927951 None:intergenic 45.0%
GTTAGTGAACAATGCTGCTG+CGG - chr1_4:59927968-59927987 Msa0174310:three_prime_UTR 45.0%
TAACCTTTGATCCCAACCCT+TGG + chr1_4:59927996-59928015 None:intergenic 45.0%
GGATCAAAGGTTATGAGTGG+TGG - chr1_4:59928003-59928022 Msa0174310:three_prime_UTR 45.0%
! AGCATTGAATGAAGCAACGG+TGG + chr1_4:59928120-59928139 None:intergenic 45.0%
GAAGCAAGGGCAATGTACAA+CGG - chr1_4:59928271-59928290 Msa0174310:CDS 45.0%
!! ACATTTTTAGGGACCCACGA+TGG - chr1_4:59928332-59928351 Msa0174310:CDS 45.0%
!! CATTTTTAGGGACCCACGAT+GGG - chr1_4:59928333-59928352 Msa0174310:CDS 45.0%
!! ATTTTTAGGGACCCACGATG+GGG - chr1_4:59928334-59928353 Msa0174310:CDS 45.0%
GCTAAAATTGGATCCTCACC+GGG + chr1_4:59928376-59928395 None:intergenic 45.0%
!! GGTGAGGATCCAATTTTAGC+AGG - chr1_4:59928376-59928395 Msa0174310:CDS 45.0%
CTGTAGTCCTCTCACATAAC+TGG + chr1_4:59928413-59928432 None:intergenic 45.0%
CAGTTATGTGAGAGGACTAC+AGG - chr1_4:59928411-59928430 Msa0174310:CDS 45.0%
TACAGGGAACAGACAGTAGT+CGG - chr1_4:59928428-59928447 Msa0174310:CDS 45.0%
AGACAGTAGTCGGTTAAAGG+TGG - chr1_4:59928438-59928457 Msa0174310:CDS 45.0%
! GCCATTTAGGATGTGTGTGA+AGG - chr1_4:59928755-59928774 Msa0174310:intron 45.0%
GTGTGTGAAGGAAGGTAATG+TGG - chr1_4:59928767-59928786 Msa0174310:intron 45.0%
TGCTGACCCCAATCTTCTAA+AGG - chr1_4:59928836-59928855 Msa0174310:intron 45.0%
GCTGACCCCAATCTTCTAAA+GGG - chr1_4:59928837-59928856 Msa0174310:intron 45.0%
AGGGAACAATTCGTGGTCAA+TGG - chr1_4:59928856-59928875 Msa0174310:intron 45.0%
CTAGCCTGCTTTAATGGCAT+CGG + chr1_4:59929065-59929084 None:intergenic 45.0%
TGGGTATGTTGTGCAAGGAA+AGG + chr1_4:59929227-59929246 None:intergenic 45.0%
TTGCCATATGGTTGAGCAGA+TGG + chr1_4:59929350-59929369 None:intergenic 45.0%
AGAGCTAAGTCTTGGTGAGT+TGG + chr1_4:59929398-59929417 None:intergenic 45.0%
CAGCTTCAAGAGCTAAGTCT+TGG + chr1_4:59929406-59929425 None:intergenic 45.0%
CTCTTGAAGCTGCAAGACAA+GGG - chr1_4:59929414-59929433 Msa0174310:CDS 45.0%
! CGATGATTTTTCGTGGAGAG+AGG + chr1_4:59929473-59929492 None:intergenic 45.0%
ACTATGATCGGCAACTATGC+TGG - chr1_4:59929533-59929552 Msa0174310:CDS 45.0%
CCATGTGCCTGCATAAAACA+AGG + chr1_4:59929565-59929584 None:intergenic 45.0%
!!! CCTTGTTTTATGCAGGCACA+TGG - chr1_4:59929562-59929581 Msa0174310:CDS 45.0%
GGATACACAAGTCCACTACA+AGG - chr1_4:59929815-59929834 Msa0174310:intron 45.0%
AAACAGTAGCATCCGCTTGA+CGG + chr1_4:59929934-59929953 None:intergenic 45.0%
GGGATTGGATCAGTCAATTG+AGG - chr1_4:59929961-59929980 Msa0174310:CDS 45.0%
TCAGTCAATTGAGGCCGAAA+TGG - chr1_4:59929970-59929989 Msa0174310:CDS 45.0%
TTGAGGCCGAAATGGTAGAT+AGG - chr1_4:59929978-59929997 Msa0174310:CDS 45.0%
!! AGGACTGGTTTACTTCTTCC+TGG - chr1_4:59929998-59930017 Msa0174310:CDS 45.0%
!! GGACTGGTTTACTTCTTCCT+GGG - chr1_4:59929999-59930018 Msa0174310:CDS 45.0%
TCGAATTGTAGGCGTCTTGT+GGG - chr1_4:59930129-59930148 Msa0174310:CDS 45.0%
CGGGCCATTGTAAAAACGAT+AGG + chr1_4:59930802-59930821 None:intergenic 45.0%
! ACCAAAAGTGGTGTCAGTTC+CGG - chr1_4:59930884-59930903 Msa0174310:intron 45.0%
!! TGTTTGTGCTATTTCCACGG+CGG + chr1_4:59930920-59930939 None:intergenic 45.0%
! ACCAGCAGGTAATGGTCAAT+GGG - chr1_4:59931058-59931077 Msa0174310:CDS 45.0%
!! TGGTTGATAAGTCTGGGACT+AGG - chr1_4:59931180-59931199 Msa0174310:intron 45.0%
TGGGACTAGGAGAATTCCAA+TGG - chr1_4:59931193-59931212 Msa0174310:intron 45.0%
GGGACTAGGAGAATTCCAAT+GGG - chr1_4:59931194-59931213 Msa0174310:intron 45.0%
GGACTAGGAGAATTCCAATG+GGG - chr1_4:59931195-59931214 Msa0174310:intron 45.0%
GACTAGGAGAATTCCAATGG+GGG - chr1_4:59931196-59931215 Msa0174310:intron 45.0%
GTAGGGGTTGTTGCAATTCT+TGG - chr1_4:59931408-59931427 Msa0174310:CDS 45.0%
GGCAGTGATGCCTTGCAAAA+TGG + chr1_4:59927888-59927907 None:intergenic 50.0%
GGGTGAATGACCTCATTGGA+AGG - chr1_4:59927919-59927938 Msa0174310:three_prime_UTR 50.0%
GTTCCAAGGGTTGGGATCAA+AGG - chr1_4:59927990-59928009 Msa0174310:three_prime_UTR 50.0%
AGGTTATGAGTGGTGGTCAG+AGG - chr1_4:59928010-59928029 Msa0174310:three_prime_UTR 50.0%
GGAGTTTCAAATGTGGGACC+AGG - chr1_4:59928041-59928060 Msa0174310:three_prime_UTR 50.0%
GTGGGACCAGGAACTAAGTT+TGG - chr1_4:59928053-59928072 Msa0174310:three_prime_UTR 50.0%
GGACCAGGAACTAAGTTTGG+TGG - chr1_4:59928056-59928075 Msa0174310:three_prime_UTR 50.0%
TGGCCACCAAACTTAGTTCC+TGG + chr1_4:59928062-59928081 None:intergenic 50.0%
GATGACTTGAGGGAAGCTAG+TGG + chr1_4:59928096-59928115 None:intergenic 50.0%
! CAACGGTGGTGATGACTTGA+GGG + chr1_4:59928106-59928125 None:intergenic 50.0%
GCTTCCTTGTGGGAAGCAAT+TGG - chr1_4:59928137-59928156 Msa0174310:exon 50.0%
CCTTGTGGGAAGCAATTGGA+CGG - chr1_4:59928141-59928160 Msa0174310:CDS 50.0%
CTTGTGGGAAGCAATTGGAC+GGG - chr1_4:59928142-59928161 Msa0174310:CDS 50.0%
AGGTTGCATCAGACGAAGCA+AGG - chr1_4:59928257-59928276 Msa0174310:CDS 50.0%
GGTTGCATCAGACGAAGCAA+GGG - chr1_4:59928258-59928277 Msa0174310:CDS 50.0%
GGCAATGTACAACGGAGGAA+TGG - chr1_4:59928279-59928298 Msa0174310:CDS 50.0%
ATGTACAACGGAGGAATGGC+TGG - chr1_4:59928283-59928302 Msa0174310:CDS 50.0%
TGTACAACGGAGGAATGGCT+GGG - chr1_4:59928284-59928303 Msa0174310:CDS 50.0%
! GAATGGCTGGGTTGACATAC+TGG - chr1_4:59928296-59928315 Msa0174310:CDS 50.0%
TACGCTGCCAGTTATGTGAG+AGG - chr1_4:59928403-59928422 Msa0174310:CDS 50.0%
!! CCAAAAGTGTTGGACTGGAC+TGG + chr1_4:59928608-59928627 None:intergenic 50.0%
! CCAGTCCAGTCCAACACTTT+TGG - chr1_4:59928605-59928624 Msa0174310:CDS 50.0%
CTACATGCAGGTTAGCAAGC+AGG - chr1_4:59928710-59928729 Msa0174310:CDS 50.0%
GATTGGGGTCAGCACAAGTA+GGG + chr1_4:59928830-59928849 None:intergenic 50.0%
AGATTGGGGTCAGCACAAGT+AGG + chr1_4:59928831-59928850 None:intergenic 50.0%
GTGGTCAATGGCGTCTTGAT+GGG - chr1_4:59928868-59928887 Msa0174310:intron 50.0%
GAGCCATCTGCTCAACCATA+TGG - chr1_4:59929344-59929363 Msa0174310:CDS 50.0%
GCTCAACCATATGGCAACCT+TGG - chr1_4:59929353-59929372 Msa0174310:CDS 50.0%
GTTGGACCAAGGTTGCCATA+TGG + chr1_4:59929362-59929381 None:intergenic 50.0%
TGCACACATCAGTTGGACCA+AGG + chr1_4:59929373-59929392 None:intergenic 50.0%
GTTGGAGTGCACACATCAGT+TGG + chr1_4:59929380-59929399 None:intergenic 50.0%
GCTCTTGAAGCTGCAAGACA+AGG - chr1_4:59929413-59929432 Msa0174310:CDS 50.0%
CATCGTACTGTGGCAGTCAT+TGG - chr1_4:59929488-59929507 Msa0174310:CDS 50.0%
TGATCGGCAACTATGCTGGT+AGG - chr1_4:59929537-59929556 Msa0174310:CDS 50.0%
GATCGGCAACTATGCTGGTA+GGG - chr1_4:59929538-59929557 Msa0174310:CDS 50.0%
!!! GTAGGGCCCTTGTTTTATGC+AGG - chr1_4:59929555-59929574 Msa0174310:CDS 50.0%
TCTAAATGCAGCCCGTCAAG+CGG - chr1_4:59929919-59929938 Msa0174310:CDS 50.0%
AACAGTAGCATCCGCTTGAC+GGG + chr1_4:59929933-59929952 None:intergenic 50.0%
GCCGAAATGGTAGATAGGAC+TGG - chr1_4:59929983-59930002 Msa0174310:CDS 50.0%
!! ACAAGGTCTTGTTGATGCCC+AGG + chr1_4:59930019-59930038 None:intergenic 50.0%
!! CAGCCGCTACCTTTGAAACA+AGG + chr1_4:59930036-59930055 None:intergenic 50.0%
CACAAGACGCCTACAATTCG+AGG + chr1_4:59930130-59930149 None:intergenic 50.0%
CTCGAATTGTAGGCGTCTTG+TGG - chr1_4:59930128-59930147 Msa0174310:CDS 50.0%
! TTGTTTGGAACCGCTAACCC+AGG - chr1_4:59930196-59930215 Msa0174310:CDS 50.0%
CCTTGTGGGTACCATGTCAT+AGG + chr1_4:59930708-59930727 None:intergenic 50.0%
CCTATGACATGGTACCCACA+AGG - chr1_4:59930705-59930724 Msa0174310:intron 50.0%
ATGAGACCAAGCTCATCCAC+AGG - chr1_4:59930762-59930781 Msa0174310:intron 50.0%
TGAGACCAAGCTCATCCACA+GGG - chr1_4:59930763-59930782 Msa0174310:intron 50.0%
! ACCGGAACTGACACCACTTT+TGG + chr1_4:59930888-59930907 None:intergenic 50.0%
AGAGTGACACATGCACGATG+TGG - chr1_4:59930951-59930970 Msa0174310:CDS 50.0%
TCAGTACCACCAGCAGGTAA+TGG - chr1_4:59931050-59931069 Msa0174310:CDS 50.0%
CATTGACCATTACCTGCTGG+TGG + chr1_4:59931059-59931078 None:intergenic 50.0%
! CACCAGCAGGTAATGGTCAA+TGG - chr1_4:59931057-59931076 Msa0174310:CDS 50.0%
GGCACCACAAAAGCAACTAG+TGG - chr1_4:59931079-59931098 Msa0174310:CDS 50.0%
ACAATGCTGCTGCGGTTCCA+AGG - chr1_4:59927976-59927995 Msa0174310:three_prime_UTR 55.0%
CAATGCTGCTGCGGTTCCAA+GGG - chr1_4:59927977-59927996 Msa0174310:three_prime_UTR 55.0%
!! TGGTGGTCAGAGGCACTTCA+TGG - chr1_4:59928020-59928039 Msa0174310:three_prime_UTR 55.0%
AGCTAGTGGCAGCTGGGAAT+TGG + chr1_4:59928082-59928101 None:intergenic 55.0%
! GCAACGGTGGTGATGACTTG+AGG + chr1_4:59928107-59928126 None:intergenic 55.0%
CCGTCCAATTGCTTCCCACA+AGG + chr1_4:59928144-59928163 None:intergenic 55.0%
GCAAGGGCAATGTACAACGG+AGG - chr1_4:59928274-59928293 Msa0174310:CDS 55.0%
GCAGGTTAGCAAGCAGGACA+TGG - chr1_4:59928716-59928735 Msa0174310:CDS 55.0%
CGTGGTCAATGGCGTCTTGA+TGG - chr1_4:59928867-59928886 Msa0174310:intron 55.0%
GCTGCCGATGCCATTAAAGC+AGG - chr1_4:59929058-59929077 Msa0174310:intron 55.0%
GCAAGGACTATTCACGAGCC+CGG - chr1_4:59929851-59929870 Msa0174310:intron 55.0%
CATGCCACATTCGCACAACC+GGG + chr1_4:59929872-59929891 None:intergenic 55.0%
GCATGCCACATTCGCACAAC+CGG + chr1_4:59929873-59929892 None:intergenic 55.0%
CAAAATGGTTGGGCCTCTCG+AGG + chr1_4:59930059-59930078 None:intergenic 55.0%
! CTCGAGAGGCCCAACCATTT+TGG - chr1_4:59930057-59930076 Msa0174310:CDS 55.0%
ATTGTAGGCGTCTTGTGGGC+TGG - chr1_4:59930133-59930152 Msa0174310:CDS 55.0%
!! GTCTTGTGGGCTGGTTATCC+TGG - chr1_4:59930142-59930161 Msa0174310:CDS 55.0%
GCTGGTTATCCTGGTCAAGC+CGG - chr1_4:59930151-59930170 Msa0174310:CDS 55.0%
TGTGTCCGGATGGGTGAATC+CGG + chr1_4:59930289-59930308 None:intergenic 55.0%
GGCCCGGTAGTGTATCCATT+TGG - chr1_4:59930816-59930835 Msa0174310:intron 55.0%
! GTGGTGTCAGTTCCGGTAGA+CGG - chr1_4:59930891-59930910 Msa0174310:intron 55.0%
!! TTGTGCTATTTCCACGGCGG+TGG + chr1_4:59930917-59930936 None:intergenic 55.0%
GTGTTCTCAGTACCACCAGC+AGG - chr1_4:59931044-59931063 Msa0174310:CDS 55.0%
GCCCATTGACCATTACCTGC+TGG + chr1_4:59931062-59931081 None:intergenic 55.0%
ACTCGTTGCTGAGCCTTAGC+AGG + chr1_4:59931125-59931144 None:intergenic 55.0%
CTAAGGCTCAGCAACGAGTG+AGG - chr1_4:59931126-59931145 Msa0174310:CDS 55.0%
CTGCTGCGGTTCCAAGGGTT+GGG - chr1_4:59927982-59928001 Msa0174310:three_prime_UTR 60.0%
GAGGGAAGCTAGTGGCAGCT+GGG + chr1_4:59928088-59928107 None:intergenic 60.0%
TGAGGGAAGCTAGTGGCAGC+TGG + chr1_4:59928089-59928108 None:intergenic 60.0%
! GCATCGGCAGCAGCTTCTTC+TGG + chr1_4:59929049-59929068 None:intergenic 60.0%
GGTTATCCTGGTCAAGCCGG+TGG - chr1_4:59930154-59930173 Msa0174310:CDS 60.0%
ATCCGCAATGGCAGCACCAC+CGG + chr1_4:59930173-59930192 None:intergenic 60.0%
CCAGTCCGGATTCACCCATC+CGG - chr1_4:59930281-59930300 Msa0174310:intron 60.0%
GGGTACCCTGTGGATGAGCT+TGG + chr1_4:59930771-59930790 None:intergenic 60.0%
! AGCTCATCCACAGGGTACCC+TGG - chr1_4:59930771-59930790 Msa0174310:intron 60.0%
! GCTCATCCACAGGGTACCCT+GGG - chr1_4:59930772-59930791 Msa0174310:intron 60.0%
GCTGCTGCGGTTCCAAGGGT+TGG - chr1_4:59927981-59928000 Msa0174310:three_prime_UTR 65.0%
CCTGTCCACGACCCCATCGT+GGG + chr1_4:59928348-59928367 None:intergenic 65.0%
TCCTGTCCACGACCCCATCG+TGG + chr1_4:59928349-59928368 None:intergenic 65.0%
GGTCGTGGACAGGAGACTCC+CGG - chr1_4:59928355-59928374 Msa0174310:CDS 65.0%
TGGACAGGAGACTCCCGGTG+AGG - chr1_4:59928360-59928379 Msa0174310:CDS 65.0%
CGAGCCCGGTTGTGCGAATG+TGG - chr1_4:59929865-59929884 Msa0174310:intron 65.0%
! AAGGTAGCGGCTGCCTCGAG+AGG - chr1_4:59930043-59930062 Msa0174310:CDS 65.0%
!! AGCCGGTGGTGCTGCCATTG+CGG - chr1_4:59930168-59930187 Msa0174310:CDS 65.0%
CCGGATGGGTGAATCCGGAC+TGG + chr1_4:59930284-59930303 None:intergenic 65.0%
! GGTTCTCCCAGGGTACCCTG+TGG + chr1_4:59930781-59930800 None:intergenic 65.0%
AGGGACCCACGATGGGGTCG+TGG - chr1_4:59928340-59928359 Msa0174310:CDS 70.0%
CCCACGATGGGGTCGTGGAC+AGG - chr1_4:59928345-59928364 Msa0174310:CDS 70.0%
!! GCAGCACCACCGGCTTGACC+AGG + chr1_4:59930163-59930182 None:intergenic 70.0%
CCACGGCGGTGGCCGTCTAC+CGG + chr1_4:59930906-59930925 None:intergenic 75.0%
! CCGGTAGACGGCCACCGCCG+TGG - chr1_4:59930903-59930922 Msa0174310:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59927735 59931701 59927735 ID=Msa0174310;Name=Msa0174310
chr1_4 mRNA 59927735 59931701 59927735 ID=Msa0174310-mRNA-1;Parent=Msa0174310;Name=Msa0174310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=45|1|1|1|1|1|7|406|765
chr1_4 exon 59927735 59928742 59927735 ID=Msa0174310-mRNA-1:exon:18826;Parent=Msa0174310-mRNA-1
chr1_4 exon 59929219 59929632 59929219 ID=Msa0174310-mRNA-1:exon:18825;Parent=Msa0174310-mRNA-1
chr1_4 exon 59929882 59930232 59929882 ID=Msa0174310-mRNA-1:exon:18824;Parent=Msa0174310-mRNA-1
chr1_4 exon 59930357 59930454 59930357 ID=Msa0174310-mRNA-1:exon:18823;Parent=Msa0174310-mRNA-1
chr1_4 exon 59930547 59930716 59930547 ID=Msa0174310-mRNA-1:exon:18822;Parent=Msa0174310-mRNA-1
chr1_4 exon 59930899 59931177 59930899 ID=Msa0174310-mRNA-1:exon:18821;Parent=Msa0174310-mRNA-1
chr1_4 exon 59931273 59931701 59931273 ID=Msa0174310-mRNA-1:exon:18820;Parent=Msa0174310-mRNA-1
chr1_4 five_prime_UTR 59931657 59931701 59931657 ID=Msa0174310-mRNA-1:five_prime_utr;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59931273 59931656 59931273 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59930899 59931177 59930899 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59930547 59930716 59930547 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59930357 59930454 59930357 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59929882 59930232 59929882 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59929219 59929632 59929219 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 CDS 59928141 59928742 59928141 ID=Msa0174310-mRNA-1:cds;Parent=Msa0174310-mRNA-1
chr1_4 three_prime_UTR 59927735 59928140 59927735 ID=Msa0174310-mRNA-1:three_prime_utr;Parent=Msa0174310-mRNA-1
Gene Sequence

>Msa0174310

ATGGATTCAATCCTCATCACCATTGTATTTCTCCTTCTCTTATTGAGTGGTGAGGCACGTGACCCTTTTGCATGTGACCCAAAAAACACCTCCACAAAGAAATTACCATTTTGCAAGGCATCACTGCCTATACCAACAAGGGTGAATGACCTCATTGGAAGGTTGACATTGCAAGAAAAGGTTAACATGTTAGTGAACAATGCTGCTGCGGTTCCAAGGGTTGGGATCAAAGGTTATGAGTGGTGGTCAGAGGCACTTCATGGAGTTTCAAATGTGGGACCAGGAACTAAGTTTGGTGGCCAATTCCCAGCTGCCACTAGCTTCCCTCAAGTCATCACCACCGTTGCTTCATTCAATGCTTCCTTGTGGGAAGCAATTGGACGGGTTGCATCAGACGAAGCAAGGGCAATGTACAACGGAGGAATGGCTGGGTTGACATACTGGAGTCCAAATGTGAACATTTTTAGGGACCCACGATGGGGTCGTGGACAGGAGACTCCCGGTGAGGATCCAATTTTAGCAGGTAAATACGCTGCCAGTTATGTGAGAGGACTACAGGGAACAGACAGTAGTCGGTTAAAGGTGGCTGCTTCATGTAAACACTTTACGGCTTATGATCTTGATAATTGGAATGGTGTGGATCGCTTTCACTTTAATGCAAAGGTTAGCAAGCAGGACATGGAAGACACGTTCAATGTGCCATTTAGGATGTGTGTGAAGGAAGGTAATGTGGCTAGTGTGATGTGTTCTTACAATCAGGTTAATGGTGTCCCTACTTGTGCTGACCCCAATCTTCTAAAGGGAACAATTCGTGGTCAATGGCGTCTTGATGGGTACATTGTATCAGATTGTGATTCTGTTGGGGTATTTTACACCAACCAACATTATACATCAACACCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGACCTTTCCTTGCACAACATACCCAAAATGCCGTTAAAAAAGGCTTGTTAACCGAAACTGATGTAAATGGTGCTTTAGCAAACACACTTACAGTCCAAATGAGGTTAGGAATGTTTGATGGTGAGCCATCTGCTCAACCATATGGCAACCTTGGTCCAACTGATGTGTGCACTCCAACTCACCAAGACTTAGCTCTTGAAGCTGCAAGACAAGGGATTGTGCTTCTTAAGAACACTGGTTCATCTTTGCCTCTCTCCACGAAAAATCATCGTACTGTGGCAGTCATTGGACCCAATTCTAATGCTACTGTCACTATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGTCCACTACAAGGAATAGGGAAATATGCAAGGACTATTCACGAGCCCGGTTGTGCGAATGTGGCATGCAATGATGATAAGCAATTTGGATCGGCTCTAAATGCAGCCCGTCAAGCGGATGCTACTGTTTTAGTGATGGGATTGGATCAGTCAATTGAGGCCGAAATGGTAGATAGGACTGGTTTACTTCTTCCTGGGCATCAACAAGACCTTGTTTCAAAGGTAGCGGCTGCCTCGAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTATAGATATAACTTTTGCCAAGAATGATCCTCGAATTGTAGGCGTCTTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCGGATATATTGTTTGGAACCGCTAACCCAGGAGCTAAGTTACCTATGACATGGTACCCACAAGGATACCTTAAAAACTTGGCAATGACAGACATCGCAATGAGACCAAGCTCATCCACAGGGTACCCTGGGAGAACCTATCGTTTTTACAATGGCCCGGTAGTGTATCCATTTGGTTATGGATTATCTTACACCAACTTTGTTCACACATTAGCTAGTGCACCAAAAGTGGTGTCAGTTCCGGTAGACGGCCACCGCCGTGGAAATAGCACAAACAAAGCAGCAATTAGAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGACTTGACATTGATGTTAAAAACATTGGTTCAAAAGATGGTACTAACACTTTGTTGGTGTTCTCAGTACCACCAGCAGGTAATGGTCAATGGGCACCACAAAAGCAACTAGTGGCTTTTGAGAAAGTCTATGTTCCTGCTAAGGCTCAGCAACGAGTGAGGATCGATATTCATGTATGTAAGCTTTTGAGTGTGGTTGATAAGTCTGGGACTAGGAGAATTCCAATGGGGGTACATAGTATTCACATTGGTGATGTTAAACACTTTGTATCACTTCAAGAACAAACACTAGGGACCATCAAGACTTGA
Protein sequence

>Msa0174310

MDSILITIVFLLLLLSGEARDPFACDPKNTSTKKLPFCKASLPIPTRVNDLIGRLTLQEKVNMLVNNAAAVPRVGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTVASFNASLWEAIGRVASDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGKYAASYVRGLQGTDSSRLKVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDMEDTFNVPFRMCVKEGNVASVMCSYNQVNGVPTCADPNLLKGTIRGQWRLDGYIVSDCDSVGVFYTNQHYTSTPEEAAADAIKAGLDLDCGPFLAQHTQNAVKKGLLTETDVNGALANTLTVQMRLGMFDGEPSAQPYGNLGPTDVCTPTHQDLALEAARQGIVLLKNTGSSLPLSTKNHRTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGKYARTIHEPGCANVACNDDKQFGSALNAARQADATVLVMGLDQSIEAEMVDRTGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPIDITFAKNDPRIVGVLWAGYPGQAGGAAIADILFGTANPGAKLPMTWYPQGYLKNLAMTDIAMRPSSSTGYPGRTYRFYNGPVVYPFGYGLSYTNFVHTLASAPKVVSVPVDGHRRGNSTNKAAIRVTHARCGKLSIRLDIDVKNIGSKDGTNTLLVFSVPPAGNGQWAPQKQLVAFEKVYVPAKAQQRVRIDIHVCKLLSVVDKSGTRRIPMGVHSIHIGDVKHFVSLQEQTLGTIKT*