Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174740 | XP_003591518.1 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 1.28e-86 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174740 | sp|Q9LZH8|OP164_ARATH | 62.016 | 129 | 49 | 0 | 1 | 129 | 1 | 129 | 9.95e-44 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174740 | G7IF50 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 6.12e-87 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0174740 | Msa1379770 | 0.857311 | 1.780063e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174740 | MtrunA17_Chr1g0195491 | 97.674 | 129 | 3 | 0 | 1 | 129 | 1 | 129 | 1.18e-90 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174740 | AT3G62880.1 | 62.016 | 129 | 49 | 0 | 1 | 129 | 1 | 129 | 1.01e-44 | 142 |
| Msa0174740 | AT3G62880.2 | 60.000 | 105 | 42 | 0 | 25 | 129 | 10 | 114 | 3.99e-32 | 110 |
Find 58 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAACTCGGTTCGTGTTTA+TGG | 0.092017 | 1_4:+60505284 | Msa0174740:CDS |
| TTCTTCAGGCCGGTGCAATT+TGG | 0.196698 | 1_4:+60504985 | Msa0174740:intron |
| TTTCTATTTACAGGTCTTAA+AGG | 0.219159 | 1_4:+60505110 | Msa0174740:intron |
| TCTTCAGGCCGGTGCAATTT+GGG | 0.225019 | 1_4:+60504986 | Msa0174740:intron |
| AGCATGGAACGGCGTCGTTC+TGG | 0.323308 | 1_4:-60504860 | None:intergenic |
| CAAACTCGGTTCGTGTTTAT+GGG | 0.335196 | 1_4:+60505285 | Msa0174740:CDS |
| TTAGCTATCATTTATTTCAT+TGG | 0.346882 | 1_4:+60507388 | Msa0174740:three_prime_UTR |
| AAACAGGTCAATGGTTTGAT+TGG | 0.362737 | 1_4:+60507127 | Msa0174740:intron |
| CGAAGTCGAATGCAGGTGTT+TGG | 0.366530 | 1_4:+60507187 | Msa0174740:CDS |
| AACAGGTCAATGGTTTGATT+GGG | 0.375458 | 1_4:+60507128 | Msa0174740:intron |
| TGCGCTGCCGTGTGGGTAGA+AGG | 0.393603 | 1_4:+60504821 | Msa0174740:five_prime_UTR |
| GTGTGGGTAGAAGGAGAATA+TGG | 0.395841 | 1_4:+60504830 | Msa0174740:exon |
| CAATACTAGTGCCATGGGTA+AGG | 0.413367 | 1_4:-60504800 | None:intergenic |
| CTTCAGGCCGGTGCAATTTG+GGG | 0.421918 | 1_4:+60504987 | Msa0174740:intron |
| ACCTTGTAGAGTTGCGTCAT+AGG | 0.424374 | 1_4:-60505024 | None:intergenic |
| GGTGTTTGGGATGGCCGGTT+TGG | 0.430432 | 1_4:+60507201 | Msa0174740:CDS |
| CTAGTATTGCGCTGCCGTGT+GGG | 0.457783 | 1_4:+60504814 | Msa0174740:five_prime_UTR |
| CCCTATGACGCAACTCTACA+AGG | 0.457903 | 1_4:+60505023 | Msa0174740:CDS |
| TAATATCCCAAACAGGTCAA+TGG | 0.465718 | 1_4:+60507118 | Msa0174740:intron |
| ATGCAGGTGTTTGGGATGGC+CGG | 0.471349 | 1_4:+60507196 | Msa0174740:CDS |
| GAAGTCGAATGCAGGTGTTT+GGG | 0.474023 | 1_4:+60507188 | Msa0174740:CDS |
| CAGGTCTTAAAGGCATTCCC+AGG | 0.474217 | 1_4:+60505120 | Msa0174740:intron |
| CCTTGTAGAGTTGCGTCATA+GGG | 0.500962 | 1_4:-60505023 | None:intergenic |
| ACAGAAAACAGAAACCAAAC+CGG | 0.501464 | 1_4:-60507215 | None:intergenic |
| TACCGTTCCGACACGAAGCA+TGG | 0.502503 | 1_4:-60504901 | None:intergenic |
| TGGATTGTAGGACTTGTAGC+TGG | 0.511545 | 1_4:+60505389 | Msa0174740:intron |
| GATGTGGGGTTAAGAAATAC+AGG | 0.512526 | 1_4:+60505429 | Msa0174740:CDS |
| ATCCATGCTTCGTGTCGGAA+CGG | 0.545341 | 1_4:+60504899 | Msa0174740:CDS |
| TTCAGGCCGGTGCAATTTGG+GGG | 0.548038 | 1_4:+60504988 | Msa0174740:intron |
| CAGGTGCGACTGTTGCTGCT+AGG | 0.556129 | 1_4:+60507161 | Msa0174740:CDS |
| ACAGGTCAATGGTTTGATTG+GGG | 0.572104 | 1_4:+60507129 | Msa0174740:intron |
| ACTAGTATTGCGCTGCCGTG+TGG | 0.573724 | 1_4:+60504813 | Msa0174740:five_prime_UTR |
| GACACGAAGCATGGATTCAA+CGG | 0.574889 | 1_4:-60504892 | None:intergenic |
| CGTGTTTATGGGACTCAATG+TGG | 0.575361 | 1_4:+60505296 | Msa0174740:CDS |
| TTGTTAGAAACTGTGACAGA+AGG | 0.581164 | 1_4:+60507272 | Msa0174740:three_prime_UTR |
| GTGTCAAGTACAGGCAAACT+CGG | 0.582667 | 1_4:+60505271 | Msa0174740:intron |
| TTTACCACAAAAGAAGCCCT+GGG | 0.584756 | 1_4:-60505137 | None:intergenic |
| GCAGCGCAATACTAGTGCCA+TGG | 0.587396 | 1_4:-60504806 | None:intergenic |
| AAGCATGGATTCAACGGCGA+GGG | 0.593304 | 1_4:-60504886 | None:intergenic |
| AATACTAGTGCCATGGGTAA+GGG | 0.594016 | 1_4:-60504799 | None:intergenic |
| TAGGACACGAAGTCGAATGC+AGG | 0.595422 | 1_4:+60507180 | Msa0174740:CDS |
| CAGGTCAATGGTTTGATTGG+GGG | 0.610628 | 1_4:+60507130 | Msa0174740:intron |
| TCGAATGCAGGTGTTTGGGA+TGG | 0.613614 | 1_4:+60507192 | Msa0174740:CDS |
| AGGTCTTAAAGGCATTCCCA+GGG | 0.613738 | 1_4:+60505121 | Msa0174740:intron |
| TCAACGGCGAGGGATGAGCA+TGG | 0.619036 | 1_4:-60504876 | None:intergenic |
| CAGCGCAATACTAGTGCCAT+GGG | 0.619375 | 1_4:-60504805 | None:intergenic |
| AAAATGCCCGCCCTTACCCA+TGG | 0.629518 | 1_4:+60504789 | Msa0174740:five_prime_UTR |
| TTTCAGCATCACTCGATGTG+GGG | 0.631500 | 1_4:+60505415 | Msa0174740:CDS |
| ACTAGTGCCATGGGTAAGGG+CGG | 0.631835 | 1_4:-60504796 | None:intergenic |
| CTAGTGCCATGGGTAAGGGC+GGG | 0.632918 | 1_4:-60504795 | None:intergenic |
| ATATTCTCCTTCTACCCACA+CGG | 0.638132 | 1_4:-60504828 | None:intergenic |
| GGCGAGGGATGAGCATGGAA+CGG | 0.639834 | 1_4:-60504871 | None:intergenic |
| GTTGAATCCATGCTTCGTGT+CGG | 0.653536 | 1_4:+60504894 | Msa0174740:CDS |
| ATGTGGGGTTAAGAAATACA+GGG | 0.678127 | 1_4:+60505430 | Msa0174740:CDS |
| GTATCAAGAAACATGAGTCG+CGG | 0.682367 | 1_4:-60507299 | None:intergenic |
| GAAGCATGGATTCAACGGCG+AGG | 0.716779 | 1_4:-60504887 | None:intergenic |
| TGTGGGGTTAAGAAATACAG+GGG | 0.744054 | 1_4:+60505431 | Msa0174740:CDS |
| GTGGGGTTAAGAAATACAGG+GGG | 0.779226 | 1_4:+60505432 | Msa0174740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTCTTTTT+TGG | + | chr1_4:60505171-60505190 | Msa0174740:intron | 10.0% |
| !! | TAGAAATTCAATAGAAAAAA+TGG | - | chr1_4:60505074-60505093 | None:intergenic | 15.0% |
| !!! | AAATTAATGTTACTTGATTT+TGG | + | chr1_4:60505369-60505388 | Msa0174740:intron | 15.0% |
| !!! | ATCTAATGAACTAATATTTT+GGG | - | chr1_4:60505606-60505625 | None:intergenic | 15.0% |
| !!! | AACTTCTTATTTGTTAATAA+AGG | + | chr1_4:60506011-60506030 | Msa0174740:intron | 15.0% |
| !! | TACAAGAATATAAATCTTAA+TGG | - | chr1_4:60506478-60506497 | None:intergenic | 15.0% |
| !!! | TCTATTTATAAGAGAAATTT+TGG | - | chr1_4:60506633-60506652 | None:intergenic | 15.0% |
| !!! | TACATGTTCTTTTTTTTTTT+TGG | - | chr1_4:60507443-60507462 | None:intergenic | 15.0% |
| !! | GAAGAAATTAGAGTTTAAAA+CGG | - | chr1_4:60504971-60504990 | None:intergenic | 20.0% |
| !!! | TTTTAAACTCTAATTTCTTC+AGG | + | chr1_4:60504971-60504990 | Msa0174740:intron | 20.0% |
| !!! | AATTAGTCTATAAATTAACG+AGG | + | chr1_4:60505510-60505529 | Msa0174740:intron | 20.0% |
| !!! | CATCTAATGAACTAATATTT+TGG | - | chr1_4:60505607-60505626 | None:intergenic | 20.0% |
| !! | CAAAATATTAGTTCATTAGA+TGG | + | chr1_4:60505605-60505624 | Msa0174740:intron | 20.0% |
| !! | AAATGAAACTTAAAAACCTA+AGG | - | chr1_4:60505639-60505658 | None:intergenic | 20.0% |
| !!! | AGGTTTTTAAGTTTCATTTT+AGG | + | chr1_4:60505640-60505659 | Msa0174740:intron | 20.0% |
| !!! | TTCTTATTTGTTAATAAAGG+AGG | + | chr1_4:60506014-60506033 | Msa0174740:intron | 20.0% |
| !!! | ATAACAATTTTTAACTAGTG+AGG | - | chr1_4:60506096-60506115 | None:intergenic | 20.0% |
| !! | TCACTAGTTAAAAATTGTTA+TGG | + | chr1_4:60506095-60506114 | Msa0174740:intron | 20.0% |
| !! | TTTGTTTACATAAGAATACT+GGG | + | chr1_4:60506268-60506287 | Msa0174740:intron | 20.0% |
| !!! | ATTATTTTCAGTACTAATGT+TGG | + | chr1_4:60506387-60506406 | Msa0174740:intron | 20.0% |
| !! | ATTTCTCTTATAAATAGAAC+CGG | + | chr1_4:60506635-60506654 | Msa0174740:intron | 20.0% |
| !! | TTAGCTATCATTTATTTCAT+TGG | + | chr1_4:60507388-60507407 | Msa0174740:three_prime_UTR | 20.0% |
| ! | AGGAAGTTAACAAGAATAAA+CGG | - | chr1_4:60504930-60504949 | None:intergenic | 25.0% |
| !!! | AACCATTGATTTCTATTTAC+AGG | + | chr1_4:60505101-60505120 | Msa0174740:intron | 25.0% |
| ! | TTTCTATTTACAGGTCTTAA+AGG | + | chr1_4:60505110-60505129 | Msa0174740:intron | 25.0% |
| ! | AAATACAAATACTGATGCTA+GGG | + | chr1_4:60505208-60505227 | Msa0174740:intron | 25.0% |
| !!! | AAGCTTTTGAAAAATTAAGG+TGG | - | chr1_4:60505885-60505904 | None:intergenic | 25.0% |
| !!! | GTGAAGCTTTTGAAAAATTA+AGG | - | chr1_4:60505888-60505907 | None:intergenic | 25.0% |
| !! | CTTTGTTTACATAAGAATAC+TGG | + | chr1_4:60506267-60506286 | Msa0174740:intron | 25.0% |
| ! | GAAAGAAAAATAATGTTGCT+TGG | + | chr1_4:60506409-60506428 | Msa0174740:intron | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | chr1_4:60506551-60506570 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | chr1_4:60506548-60506567 | Msa0174740:intron | 25.0% |
| !!! | TCAGAAAGCACAATTTTTTA+TGG | + | chr1_4:60506937-60506956 | Msa0174740:intron | 25.0% |
| ! | GCTAAATGAATGTATTTACA+TGG | + | chr1_4:60506992-60507011 | Msa0174740:intron | 25.0% |
| !! | AAATGTAGGAATTTGATAAC+TGG | + | chr1_4:60507019-60507038 | Msa0174740:intron | 25.0% |
| !! | AATGTAGGAATTTGATAACT+GGG | + | chr1_4:60507020-60507039 | Msa0174740:intron | 25.0% |
| !! | AAATTTCCTCTTTTCCTTTT+TGG | + | chr1_4:60507089-60507108 | Msa0174740:intron | 25.0% |
| ! | GGATATTAATTTAGCCAAAA+AGG | - | chr1_4:60507106-60507125 | None:intergenic | 25.0% |
| !! | ATTTTGCTTTCGTCAAAAAA+AGG | - | chr1_4:60507348-60507367 | None:intergenic | 25.0% |
| GACCTGTAAATAGAAATCAA+TGG | - | chr1_4:60505106-60505125 | None:intergenic | 30.0% | |
| CAAATACAAATACTGATGCT+AGG | + | chr1_4:60505207-60505226 | Msa0174740:intron | 30.0% | |
| !! | TTGCTTTTATTTGAGGTGAT+TGG | + | chr1_4:60505232-60505251 | Msa0174740:intron | 30.0% |
| ! | GTTACTTGATTTTGGATTGT+AGG | + | chr1_4:60505377-60505396 | Msa0174740:intron | 30.0% |
| AGCTTCACTTTGTAAAATCA+TGG | + | chr1_4:60505900-60505919 | Msa0174740:intron | 30.0% | |
| TTCACTTTGTAAAATCATGG+TGG | + | chr1_4:60505903-60505922 | Msa0174740:intron | 30.0% | |
| ATTAACAGATTCTGCATGTT+TGG | - | chr1_4:60505961-60505980 | None:intergenic | 30.0% | |
| AACATGCAGAATCTGTTAAT+TGG | + | chr1_4:60505961-60505980 | Msa0174740:intron | 30.0% | |
| !! | TATAACTTTAAGACAGGACT+AGG | + | chr1_4:60506037-60506056 | Msa0174740:intron | 30.0% |
| AGGTGATACTTAAACAATTC+TGG | - | chr1_4:60506076-60506095 | None:intergenic | 30.0% | |
| AATTTGACATTGACACACAA+TGG | - | chr1_4:60506435-60506454 | None:intergenic | 30.0% | |
| !! | ATTTTATTTGCTTGTTCGTC+TGG | + | chr1_4:60506452-60506471 | Msa0174740:intron | 30.0% |
| TTAGAAGTGATTGCATTCTA+CGG | - | chr1_4:60506509-60506528 | None:intergenic | 30.0% | |
| CTATATAGTGTTCATTAAGC+AGG | - | chr1_4:60506713-60506732 | None:intergenic | 30.0% | |
| GAACACTATATAGCATCATT+AGG | + | chr1_4:60506720-60506739 | Msa0174740:intron | 30.0% | |
| ATGGTACTTACATTGTTTGT+TGG | + | chr1_4:60506956-60506975 | Msa0174740:intron | 30.0% | |
| ! | TGTTTGTTGGAATAATTGTG+TGG | + | chr1_4:60506969-60506988 | Msa0174740:intron | 30.0% |
| ! | GTTTGTTGGAATAATTGTGT+GGG | + | chr1_4:60506970-60506989 | Msa0174740:intron | 30.0% |
| ATTTACATGGTTGCAAATGT+AGG | + | chr1_4:60507005-60507024 | Msa0174740:intron | 30.0% | |
| ATTTAGCCAAAAAGGAAAAG+AGG | - | chr1_4:60507098-60507117 | None:intergenic | 30.0% | |
| GCTAAATTAATATCCCAAAC+AGG | + | chr1_4:60507111-60507130 | Msa0174740:intron | 30.0% | |
| !! | GGTGTTTGATTTTGTGTATG+AGG | - | chr1_4:60504950-60504969 | None:intergenic | 35.0% |
| AAACTCTAATTTCTTCAGGC+CGG | + | chr1_4:60504975-60504994 | Msa0174740:intron | 35.0% | |
| !! | CTAGGGTTTGCTTTTATTTG+AGG | + | chr1_4:60505225-60505244 | Msa0174740:intron | 35.0% |
| ! | TTTGAGGTGATTGGTTGATT+TGG | + | chr1_4:60505241-60505260 | Msa0174740:intron | 35.0% |
| ATGTGGGGTTAAGAAATACA+GGG | + | chr1_4:60505430-60505449 | Msa0174740:CDS | 35.0% | |
| ! | AGTTTCATTTTAGGCGATGA+AGG | + | chr1_4:60505649-60505668 | Msa0174740:intron | 35.0% |
| ! | GTTTCATTTTAGGCGATGAA+GGG | + | chr1_4:60505650-60505669 | Msa0174740:intron | 35.0% |
| ! | TTTGTTCCTTGACTCTGAAA+TGG | + | chr1_4:60505728-60505747 | Msa0174740:intron | 35.0% |
| CAAATTCCATTTCAGAGTCA+AGG | - | chr1_4:60505737-60505756 | None:intergenic | 35.0% | |
| !! | GATTTTGTGTTACTCTTGCT+TGG | + | chr1_4:60505765-60505784 | Msa0174740:intron | 35.0% |
| TGGATAACAAAGTGCAAGTT+TGG | + | chr1_4:60505827-60505846 | Msa0174740:intron | 35.0% | |
| TGAAAAATTAAGGTGGCTCA+TGG | - | chr1_4:60505878-60505897 | None:intergenic | 35.0% | |
| TAATTGGACTTTGCACATCT+TGG | + | chr1_4:60505977-60505996 | Msa0174740:intron | 35.0% | |
| !! | AGGAGGTATAACTTTAAGAC+AGG | + | chr1_4:60506031-60506050 | Msa0174740:intron | 35.0% |
| ATCTGAAAAGGGGAAAATAC+CGG | + | chr1_4:60506144-60506163 | Msa0174740:intron | 35.0% | |
| CTGCTATATATGCTAGCATT+GGG | + | chr1_4:60506234-60506253 | Msa0174740:intron | 35.0% | |
| TAAGAATACTGGGATATGTG+TGG | + | chr1_4:60506278-60506297 | Msa0174740:intron | 35.0% | |
| ! | AGATTTTACCTACCAAAGAG+AGG | + | chr1_4:60506307-60506326 | Msa0174740:intron | 35.0% |
| TAGAAGTGATTGCATTCTAC+GGG | - | chr1_4:60506508-60506527 | None:intergenic | 35.0% | |
| TCTAATCATATTACTCCCTC+TGG | + | chr1_4:60506524-60506543 | Msa0174740:intron | 35.0% | |
| CTCTTATAAATAGGACCAGA+GGG | - | chr1_4:60506542-60506561 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGACCAG+AGG | - | chr1_4:60506543-60506562 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGAACCGG+AGG | + | chr1_4:60506638-60506657 | Msa0174740:intron | 35.0% | |
| CTCTTATAAATAGAACCGGA+GGG | + | chr1_4:60506639-60506658 | Msa0174740:intron | 35.0% | |
| TATACTGCTGTAAGGAAATC+TGG | + | chr1_4:60506753-60506772 | Msa0174740:intron | 35.0% | |
| AATGAATCTAGTCACCAAAC+TGG | - | chr1_4:60506782-60506801 | None:intergenic | 35.0% | |
| AATGCACTGCATGTTATTAG+TGG | + | chr1_4:60506810-60506829 | Msa0174740:intron | 35.0% | |
| ! | CAACACTGTGTTGTAGTTTT+GGG | + | chr1_4:60506898-60506917 | Msa0174740:intron | 35.0% |
| !! | AACACTGTGTTGTAGTTTTG+GGG | + | chr1_4:60506899-60506918 | Msa0174740:intron | 35.0% |
| CTTTCTGAATCAAAGCCAAT+TGG | - | chr1_4:60506925-60506944 | None:intergenic | 35.0% | |
| TAATATCCCAAACAGGTCAA+TGG | + | chr1_4:60507118-60507137 | Msa0174740:intron | 35.0% | |
| ATCAAACCATTGACCTGTTT+GGG | - | chr1_4:60507127-60507146 | None:intergenic | 35.0% | |
| AATCAAACCATTGACCTGTT+TGG | - | chr1_4:60507128-60507147 | None:intergenic | 35.0% | |
| AAACAGGTCAATGGTTTGAT+TGG | + | chr1_4:60507127-60507146 | Msa0174740:intron | 35.0% | |
| AACAGGTCAATGGTTTGATT+GGG | + | chr1_4:60507128-60507147 | Msa0174740:intron | 35.0% | |
| ACAGAAAACAGAAACCAAAC+CGG | - | chr1_4:60507218-60507237 | None:intergenic | 35.0% | |
| TTGTTAGAAACTGTGACAGA+AGG | + | chr1_4:60507272-60507291 | Msa0174740:three_prime_UTR | 35.0% | |
| AATACTAGTGCCATGGGTAA+GGG | - | chr1_4:60504802-60504821 | None:intergenic | 40.0% | |
| ATATTCTCCTTCTACCCACA+CGG | - | chr1_4:60504831-60504850 | None:intergenic | 40.0% | |
| TTTACCACAAAAGAAGCCCT+GGG | - | chr1_4:60505140-60505159 | None:intergenic | 40.0% | |
| ! | TTTTACCACAAAAGAAGCCC+TGG | - | chr1_4:60505141-60505160 | None:intergenic | 40.0% |
| !! | AGGTGATTGGTTGATTTGGT+TGG | + | chr1_4:60505245-60505264 | Msa0174740:intron | 40.0% |
| !! | GGTGATTGGTTGATTTGGTT+GGG | + | chr1_4:60505246-60505265 | Msa0174740:intron | 40.0% |
| ! | CAAACTCGGTTCGTGTTTAT+GGG | + | chr1_4:60505285-60505304 | Msa0174740:CDS | 40.0% |
| ! | TTTTCAGCATCACTCGATGT+GGG | + | chr1_4:60505414-60505433 | Msa0174740:CDS | 40.0% |
| GATGTGGGGTTAAGAAATAC+AGG | + | chr1_4:60505429-60505448 | Msa0174740:CDS | 40.0% | |
| TGTGGGGTTAAGAAATACAG+GGG | + | chr1_4:60505431-60505450 | Msa0174740:CDS | 40.0% | |
| TTAGATGGAACAGAGTCCTT+AGG | + | chr1_4:60505620-60505639 | Msa0174740:intron | 40.0% | |
| AGAGTCAAGGAACAAAGTCT+AGG | - | chr1_4:60505724-60505743 | None:intergenic | 40.0% | |
| GACAAAGCCCTATAGGTTAT+AGG | + | chr1_4:60505791-60505810 | Msa0174740:intron | 40.0% | |
| CCAAGTGCCTATAACCTATA+GGG | - | chr1_4:60505801-60505820 | None:intergenic | 40.0% | |
| TTATAGGCACTTGGCAATCA+TGG | + | chr1_4:60505807-60505826 | Msa0174740:intron | 40.0% | |
| TGCATGTTTGGTATCACTGT+GGG | - | chr1_4:60505949-60505968 | None:intergenic | 40.0% | |
| CTGAGCAAGTTAATCTTTGC+CGG | - | chr1_4:60506166-60506185 | None:intergenic | 40.0% | |
| ! | AACTTGCTCAGGACACTTAT+TGG | + | chr1_4:60506175-60506194 | Msa0174740:intron | 40.0% |
| GCTGCTATATATGCTAGCAT+TGG | + | chr1_4:60506233-60506252 | Msa0174740:intron | 40.0% | |
| AATGCCTGATTGCAGAAACA+TGG | + | chr1_4:60506350-60506369 | Msa0174740:intron | 40.0% | |
| ATGCCTGATTGCAGAAACAT+GGG | + | chr1_4:60506351-60506370 | Msa0174740:intron | 40.0% | |
| AGAAGTGATTGCATTCTACG+GGG | - | chr1_4:60506507-60506526 | None:intergenic | 40.0% | |
| CTTGCTTGTATACTGCTGTA+AGG | + | chr1_4:60506745-60506764 | Msa0174740:intron | 40.0% | |
| AGGAAATCTGGATTCCAGTT+TGG | + | chr1_4:60506765-60506784 | Msa0174740:intron | 40.0% | |
| ! | GCAACACTGTGTTGTAGTTT+TGG | + | chr1_4:60506897-60506916 | Msa0174740:intron | 40.0% |
| ACAGGTCAATGGTTTGATTG+GGG | + | chr1_4:60507129-60507148 | Msa0174740:intron | 40.0% | |
| GTATCAAGAAACATGAGTCG+CGG | - | chr1_4:60507302-60507321 | None:intergenic | 40.0% | |
| CAATACTAGTGCCATGGGTA+AGG | - | chr1_4:60504803-60504822 | None:intergenic | 45.0% | |
| GTGTGGGTAGAAGGAGAATA+TGG | + | chr1_4:60504830-60504849 | Msa0174740:exon | 45.0% | |
| GACACGAAGCATGGATTCAA+CGG | - | chr1_4:60504895-60504914 | None:intergenic | 45.0% | |
| GTTGAATCCATGCTTCGTGT+CGG | + | chr1_4:60504894-60504913 | Msa0174740:CDS | 45.0% | |
| CCTTGTAGAGTTGCGTCATA+GGG | - | chr1_4:60505026-60505045 | None:intergenic | 45.0% | |
| ACCTTGTAGAGTTGCGTCAT+AGG | - | chr1_4:60505027-60505046 | None:intergenic | 45.0% | |
| !! | AGGTCTTAAAGGCATTCCCA+GGG | + | chr1_4:60505121-60505140 | Msa0174740:intron | 45.0% |
| GTGTCAAGTACAGGCAAACT+CGG | + | chr1_4:60505271-60505290 | Msa0174740:intron | 45.0% | |
| ! | GCAAACTCGGTTCGTGTTTA+TGG | + | chr1_4:60505284-60505303 | Msa0174740:CDS | 45.0% |
| CGTGTTTATGGGACTCAATG+TGG | + | chr1_4:60505296-60505315 | Msa0174740:CDS | 45.0% | |
| TGGATTGTAGGACTTGTAGC+TGG | + | chr1_4:60505389-60505408 | Msa0174740:intron | 45.0% | |
| ! | GTTTTCAGCATCACTCGATG+TGG | + | chr1_4:60505413-60505432 | Msa0174740:CDS | 45.0% |
| TTTCAGCATCACTCGATGTG+GGG | + | chr1_4:60505415-60505434 | Msa0174740:CDS | 45.0% | |
| GTGGGGTTAAGAAATACAGG+GGG | + | chr1_4:60505432-60505451 | Msa0174740:CDS | 45.0% | |
| TTGGATCGACAAAGCCCTAT+AGG | + | chr1_4:60505784-60505803 | Msa0174740:intron | 45.0% | |
| CCCTATAGGTTATAGGCACT+TGG | + | chr1_4:60505798-60505817 | Msa0174740:intron | 45.0% | |
| GCCAAGTGCCTATAACCTAT+AGG | - | chr1_4:60505802-60505821 | None:intergenic | 45.0% | |
| GTGCAAGTTTGGTATCACAG+TGG | + | chr1_4:60505838-60505857 | Msa0174740:intron | 45.0% | |
| CTGTGGGTTCAACTGAATCA+AGG | - | chr1_4:60505933-60505952 | None:intergenic | 45.0% | |
| CTGCATGTTTGGTATCACTG+TGG | - | chr1_4:60505950-60505969 | None:intergenic | 45.0% | |
| GTCAGTCGCTGATCTGAAAA+GGG | + | chr1_4:60506133-60506152 | Msa0174740:intron | 45.0% | |
| TCAGTCGCTGATCTGAAAAG+GGG | + | chr1_4:60506134-60506153 | Msa0174740:intron | 45.0% | |
| !! | CGGCAAAGATTAACTTGCTC+AGG | + | chr1_4:60506164-60506183 | Msa0174740:intron | 45.0% |
| TTGAGCATGTGTCCTCTCTT+TGG | - | chr1_4:60506322-60506341 | None:intergenic | 45.0% | |
| TGCCTGATTGCAGAAACATG+GGG | + | chr1_4:60506352-60506371 | Msa0174740:intron | 45.0% | |
| AGCAAGCAAAATACTCCCTC+CGG | - | chr1_4:60506657-60506676 | None:intergenic | 45.0% | |
| !!! | GTTGTAGTTTTGGGGCCAAT+TGG | + | chr1_4:60506907-60506926 | Msa0174740:intron | 45.0% |
| CAGGTCAATGGTTTGATTGG+GGG | + | chr1_4:60507130-60507149 | Msa0174740:intron | 45.0% | |
| GAAGTCGAATGCAGGTGTTT+GGG | + | chr1_4:60507188-60507207 | Msa0174740:CDS | 45.0% | |
| CAGCGCAATACTAGTGCCAT+GGG | - | chr1_4:60504808-60504827 | None:intergenic | 50.0% | |
| AAGCATGGATTCAACGGCGA+GGG | - | chr1_4:60504889-60504908 | None:intergenic | 50.0% | |
| ATCCATGCTTCGTGTCGGAA+CGG | + | chr1_4:60504899-60504918 | Msa0174740:CDS | 50.0% | |
| TTCTTCAGGCCGGTGCAATT+TGG | + | chr1_4:60504985-60505004 | Msa0174740:intron | 50.0% | |
| TCTTCAGGCCGGTGCAATTT+GGG | + | chr1_4:60504986-60505005 | Msa0174740:intron | 50.0% | |
| ACACAACCCCCAAATTGCAC+CGG | - | chr1_4:60504997-60505016 | None:intergenic | 50.0% | |
| GCAATTTGGGGGTTGTGTAC+TGG | + | chr1_4:60504999-60505018 | Msa0174740:CDS | 50.0% | |
| CCCTATGACGCAACTCTACA+AGG | + | chr1_4:60505023-60505042 | Msa0174740:CDS | 50.0% | |
| !! | CAGGTCTTAAAGGCATTCCC+AGG | + | chr1_4:60505120-60505139 | Msa0174740:intron | 50.0% |
| ! | CATTCCCAGGGCTTCTTTTG+TGG | + | chr1_4:60505133-60505152 | Msa0174740:CDS | 50.0% |
| ! | GGTTGGGTTGTGTCAAGTAC+AGG | + | chr1_4:60505262-60505281 | Msa0174740:intron | 50.0% |
| TCAGATCAGCGACTGACGTT+AGG | - | chr1_4:60506130-60506149 | None:intergenic | 50.0% | |
| CGTCAGTCGCTGATCTGAAA+AGG | + | chr1_4:60506132-60506151 | Msa0174740:intron | 50.0% | |
| GCATGTGTCCTCTCTTTGGT+AGG | - | chr1_4:60506318-60506337 | None:intergenic | 50.0% | |
| GCCTGATTGCAGAAACATGG+GGG | + | chr1_4:60506353-60506372 | Msa0174740:intron | 50.0% | |
| TTGCCATAGTGTTGCGAGCA+TGG | + | chr1_4:60506681-60506700 | Msa0174740:intron | 50.0% | |
| TCACCATGCTCGCAACACTA+TGG | - | chr1_4:60506687-60506706 | None:intergenic | 50.0% | |
| TAGGACACGAAGTCGAATGC+AGG | + | chr1_4:60507180-60507199 | Msa0174740:CDS | 50.0% | |
| CGAAGTCGAATGCAGGTGTT+TGG | + | chr1_4:60507187-60507206 | Msa0174740:CDS | 50.0% | |
| TCGAATGCAGGTGTTTGGGA+TGG | + | chr1_4:60507192-60507211 | Msa0174740:CDS | 50.0% | |
| AAAATGCCCGCCCTTACCCA+TGG | + | chr1_4:60504789-60504808 | Msa0174740:five_prime_UTR | 55.0% | |
| ACTAGTGCCATGGGTAAGGG+CGG | - | chr1_4:60504799-60504818 | None:intergenic | 55.0% | |
| GCAGCGCAATACTAGTGCCA+TGG | - | chr1_4:60504809-60504828 | None:intergenic | 55.0% | |
| ACTAGTATTGCGCTGCCGTG+TGG | + | chr1_4:60504813-60504832 | Msa0174740:five_prime_UTR | 55.0% | |
| CTAGTATTGCGCTGCCGTGT+GGG | + | chr1_4:60504814-60504833 | Msa0174740:five_prime_UTR | 55.0% | |
| GAAGCATGGATTCAACGGCG+AGG | - | chr1_4:60504890-60504909 | None:intergenic | 55.0% | |
| TACCGTTCCGACACGAAGCA+TGG | - | chr1_4:60504904-60504923 | None:intergenic | 55.0% | |
| CTTCAGGCCGGTGCAATTTG+GGG | + | chr1_4:60504987-60505006 | Msa0174740:intron | 55.0% | |
| TTCAGGCCGGTGCAATTTGG+GGG | + | chr1_4:60504988-60505007 | Msa0174740:intron | 55.0% | |
| ! | AATACAGGGGGCGCAACGAT+TGG | + | chr1_4:60505444-60505463 | Msa0174740:CDS | 55.0% |
| ! | ATACAGGGGGCGCAACGATT+GGG | + | chr1_4:60505445-60505464 | Msa0174740:CDS | 55.0% |
| ! | GCCCCCATGTTTCTGCAATC+AGG | - | chr1_4:60506357-60506376 | None:intergenic | 55.0% |
| TTGATTGGGGGAGCTGTAGC+AGG | + | chr1_4:60507142-60507161 | Msa0174740:CDS | 55.0% | |
| ! | ATGCAGGTGTTTGGGATGGC+CGG | + | chr1_4:60507196-60507215 | Msa0174740:CDS | 55.0% |
| CTAGTGCCATGGGTAAGGGC+GGG | - | chr1_4:60504798-60504817 | None:intergenic | 60.0% | |
| AGCATGGAACGGCGTCGTTC+TGG | - | chr1_4:60504863-60504882 | None:intergenic | 60.0% | |
| GGCGAGGGATGAGCATGGAA+CGG | - | chr1_4:60504874-60504893 | None:intergenic | 60.0% | |
| TCAACGGCGAGGGATGAGCA+TGG | - | chr1_4:60504879-60504898 | None:intergenic | 60.0% | |
| CAGGTGCGACTGTTGCTGCT+AGG | + | chr1_4:60507161-60507180 | Msa0174740:CDS | 60.0% | |
| ! | GGTGTTTGGGATGGCCGGTT+TGG | + | chr1_4:60507201-60507220 | Msa0174740:CDS | 60.0% |
| TGCGCTGCCGTGTGGGTAGA+AGG | + | chr1_4:60504821-60504840 | Msa0174740:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60504772 | 60507571 | 60504772 | ID=Msa0174740;Name=Msa0174740 |
| chr1_4 | mRNA | 60504772 | 60507571 | 60504772 | ID=Msa0174740-mRNA-1;Parent=Msa0174740;Name=Msa0174740-mRNA-1;_AED=0.22;_eAED=0.22;_QI=77|1|1|1|1|1|6|307|129 |
| chr1_4 | exon | 60504772 | 60504920 | 60504772 | ID=Msa0174740-mRNA-1:exon:19173;Parent=Msa0174740-mRNA-1 |
| chr1_4 | exon | 60504993 | 60505044 | 60504993 | ID=Msa0174740-mRNA-1:exon:19174;Parent=Msa0174740-mRNA-1 |
| chr1_4 | exon | 60505123 | 60505154 | 60505123 | ID=Msa0174740-mRNA-1:exon:19175;Parent=Msa0174740-mRNA-1 |
| chr1_4 | exon | 60505284 | 60505317 | 60505284 | ID=Msa0174740-mRNA-1:exon:19176;Parent=Msa0174740-mRNA-1 |
| chr1_4 | exon | 60505399 | 60505466 | 60505399 | ID=Msa0174740-mRNA-1:exon:19177;Parent=Msa0174740-mRNA-1 |
| chr1_4 | exon | 60507133 | 60507571 | 60507133 | ID=Msa0174740-mRNA-1:exon:19178;Parent=Msa0174740-mRNA-1 |
| chr1_4 | five_prime_UTR | 60504772 | 60504848 | 60504772 | ID=Msa0174740-mRNA-1:five_prime_utr;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60504849 | 60504920 | 60504849 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60504993 | 60505044 | 60504993 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60505123 | 60505154 | 60505123 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60505284 | 60505317 | 60505284 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60505399 | 60505466 | 60505399 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | CDS | 60507133 | 60507264 | 60507133 | ID=Msa0174740-mRNA-1:cds;Parent=Msa0174740-mRNA-1 |
| chr1_4 | three_prime_UTR | 60507265 | 60507571 | 60507265 | ID=Msa0174740-mRNA-1:three_prime_utr;Parent=Msa0174740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
