Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379770 | XP_003591518.1 | 90.000 | 140 | 3 | 1 | 1 | 140 | 1 | 129 | 1.61e-83 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379770 | sp|Q9LZH8|OP164_ARATH | 57.143 | 140 | 49 | 1 | 1 | 140 | 1 | 129 | 1.85e-40 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379770 | G7IF50 | 90.000 | 140 | 3 | 1 | 1 | 140 | 1 | 129 | 7.68e-84 | 251 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1358610 | Msa1379770 | -0.800768 | 1.234484e-48 | -8.615850e-47 |
| Msa1379770 | Msa1388790 | -0.828554 | 8.428570e-55 | -8.615850e-47 |
| Msa1379770 | Msa1403580 | -0.810157 | 1.325272e-50 | -8.615850e-47 |
| Msa0663900 | Msa1379770 | 0.800655 | 1.301819e-48 | -8.615850e-47 |
| Msa0831870 | Msa1379770 | 0.816854 | 4.461031e-52 | -8.615850e-47 |
| Msa0143080 | Msa1379770 | 0.804590 | 2.007653e-49 | -8.615850e-47 |
| Msa0174740 | Msa1379770 | 0.857311 | 1.780063e-62 | -8.615850e-47 |
| Msa0197940 | Msa1379770 | -0.831575 | 1.544427e-55 | -8.615850e-47 |
| Msa0236270 | Msa1379770 | 0.825090 | 5.666045e-54 | -8.615850e-47 |
| Msa0236980 | Msa1379770 | 0.808947 | 2.410989e-50 | -8.615850e-47 |
| Msa1236640 | Msa1379770 | -0.829388 | 5.294281e-55 | -8.615850e-47 |
| Msa1269300 | Msa1379770 | 0.807102 | 5.956238e-50 | -8.615850e-47 |
| Msa0270220 | Msa1379770 | -0.800724 | 1.260321e-48 | -8.615850e-47 |
| Msa0288240 | Msa1379770 | 0.802014 | 6.858499e-49 | -8.615850e-47 |
| Msa1143840 | Msa1379770 | 0.803217 | 3.873595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379770 | MtrunA17_Chr1g0195491 | 90.000 | 140 | 3 | 1 | 1 | 140 | 1 | 129 | 1.48e-87 | 251 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379770 | AT3G62880.1 | 57.143 | 140 | 49 | 1 | 1 | 140 | 1 | 129 | 1.88e-41 | 135 |
| Msa1379770 | AT3G62880.2 | 54.310 | 116 | 42 | 1 | 25 | 140 | 10 | 114 | 1.08e-28 | 102 |
Find 59 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAACTCGGTTCGTGTTTA+TGG | 0.092017 | tig0020311:+15761 | Msa1379770:CDS |
| TTCTTCAGGCCGGTGCAATT+TGG | 0.196698 | tig0020311:+15467 | Msa1379770:intron |
| TTTCTATTTACAGGTCTTAA+AGG | 0.219159 | tig0020311:+15592 | Msa1379770:intron |
| TCTTCAGGCCGGTGCAATTT+GGG | 0.225019 | tig0020311:+15468 | Msa1379770:intron |
| AGCATGGAACGGCGTCGTTC+TGG | 0.323308 | tig0020311:-15342 | None:intergenic |
| CAAACTCGGTTCGTGTTTAT+GGG | 0.335196 | tig0020311:+15762 | Msa1379770:CDS |
| TTAGCTATCATTTATTTCAT+TGG | 0.346882 | tig0020311:+17852 | Msa1379770:three_prime_UTR |
| AAACAGGTCAATGGTTTGAT+TGG | 0.362737 | tig0020311:+17591 | Msa1379770:intron |
| CGAAGTCGAATGCAGGTGTT+TGG | 0.366530 | tig0020311:+17651 | Msa1379770:CDS |
| AACAGGTCAATGGTTTGATT+GGG | 0.375458 | tig0020311:+17592 | Msa1379770:intron |
| GTGTCGGTAGAAGGAGAATA+TGG | 0.395841 | tig0020311:+15312 | Msa1379770:exon |
| TGCGCTGCCGTGTCGGTAGA+AGG | 0.416548 | tig0020311:+15303 | Msa1379770:five_prime_UTR |
| CTTCAGGCCGGTGCAATTTG+GGG | 0.421918 | tig0020311:+15469 | Msa1379770:intron |
| ACCTTGTAGAGTTGCGTCAT+AGG | 0.424374 | tig0020311:-15506 | None:intergenic |
| GGTGTTTGGGATGGCCGGTT+TGG | 0.430432 | tig0020311:+17665 | Msa1379770:CDS |
| CCCTATGACGCAACTCTACA+AGG | 0.457903 | tig0020311:+15505 | Msa1379770:CDS |
| TAATATCCCAAACAGGTCAA+TGG | 0.465718 | tig0020311:+17582 | Msa1379770:intron |
| ATGCAGGTGTTTGGGATGGC+CGG | 0.471349 | tig0020311:+17660 | Msa1379770:CDS |
| GAAGTCGAATGCAGGTGTTT+GGG | 0.474023 | tig0020311:+17652 | Msa1379770:CDS |
| CAGGTCTTAAAGGCATTCCC+AGG | 0.474217 | tig0020311:+15602 | Msa1379770:intron |
| CTAGTATTGCGCTGCCGTGT+CGG | 0.476392 | tig0020311:+15296 | Msa1379770:five_prime_UTR |
| CAATACTAGTGCCATGGGAA+AGG | 0.488175 | tig0020311:-15282 | None:intergenic |
| CAAATACAAATACTGATGCT+AGG | 0.490965 | tig0020311:+15684 | Msa1379770:CDS |
| CCTTGTAGAGTTGCGTCATA+GGG | 0.500962 | tig0020311:-15505 | None:intergenic |
| ACAGAAAACAGAAACCAAAC+CGG | 0.501464 | tig0020311:-17679 | None:intergenic |
| TACCGTTCCGACACGAAGCA+TGG | 0.502503 | tig0020311:-15383 | None:intergenic |
| TGGATTGTAGGACTTGTAGC+TGG | 0.511545 | tig0020311:+15866 | Msa1379770:intron |
| GATGTGGGGTTAAGAAATAC+AGG | 0.512526 | tig0020311:+15906 | Msa1379770:CDS |
| AAATACAAATACTGATGCTA+GGG | 0.513595 | tig0020311:+15685 | Msa1379770:CDS |
| AATACTAGTGCCATGGGAAA+GGG | 0.529991 | tig0020311:-15281 | None:intergenic |
| ATCCATGCTTCGTGTCGGAA+CGG | 0.545341 | tig0020311:+15381 | Msa1379770:CDS |
| TTCAGGCCGGTGCAATTTGG+GGG | 0.548038 | tig0020311:+15470 | Msa1379770:intron |
| CAGGTGCGACTGTTGCTGCT+AGG | 0.556129 | tig0020311:+17625 | Msa1379770:CDS |
| GCAGCGCAATACTAGTGCCA+TGG | 0.560837 | tig0020311:-15288 | None:intergenic |
| ACAGGTCAATGGTTTGATTG+GGG | 0.572104 | tig0020311:+17593 | Msa1379770:intron |
| GACACGAAGCATGGATTCAA+CGG | 0.574889 | tig0020311:-15374 | None:intergenic |
| CGTGTTTATGGGACTCAATG+TGG | 0.575361 | tig0020311:+15773 | Msa1379770:CDS |
| TTGTTAGAAACTGTGACAGA+AGG | 0.581164 | tig0020311:+17736 | Msa1379770:three_prime_UTR |
| GTGTCAAGTACAGGCAAACT+CGG | 0.582667 | tig0020311:+15748 | Msa1379770:intron |
| TTTACCACAAAAGAAGCCCT+GGG | 0.584756 | tig0020311:-15619 | None:intergenic |
| CAGCGCAATACTAGTGCCAT+GGG | 0.587518 | tig0020311:-15287 | None:intergenic |
| AAGCATGGATTCAACGGCGA+GGG | 0.593304 | tig0020311:-15368 | None:intergenic |
| TAGGACACGAAGTCGAATGC+AGG | 0.595422 | tig0020311:+17644 | Msa1379770:CDS |
| ACTAGTGCCATGGGAAAGGG+CGG | 0.597075 | tig0020311:-15278 | None:intergenic |
| AAAATGCCCGCCCTTTCCCA+TGG | 0.603586 | tig0020311:+15271 | Msa1379770:five_prime_UTR |
| CAGGTCAATGGTTTGATTGG+GGG | 0.610628 | tig0020311:+17594 | Msa1379770:intron |
| TCGAATGCAGGTGTTTGGGA+TGG | 0.613614 | tig0020311:+17656 | Msa1379770:CDS |
| AGGTCTTAAAGGCATTCCCA+GGG | 0.613738 | tig0020311:+15603 | Msa1379770:intron |
| TCAACGGCGAGGGATGAGCA+TGG | 0.619036 | tig0020311:-15358 | None:intergenic |
| ATATTCTCCTTCTACCGACA+CGG | 0.630675 | tig0020311:-15310 | None:intergenic |
| TTTCAGCATCACTCGATGTG+GGG | 0.631500 | tig0020311:+15892 | Msa1379770:CDS |
| GGCGAGGGATGAGCATGGAA+CGG | 0.639834 | tig0020311:-15353 | None:intergenic |
| GTTGAATCCATGCTTCGTGT+CGG | 0.653536 | tig0020311:+15376 | Msa1379770:CDS |
| CTAGTGCCATGGGAAAGGGC+GGG | 0.672163 | tig0020311:-15277 | None:intergenic |
| ATGTGGGGTTAAGAAATACA+GGG | 0.678127 | tig0020311:+15907 | Msa1379770:CDS |
| GTATCAAGAAACATGAGTCG+CGG | 0.682367 | tig0020311:-17763 | None:intergenic |
| GAAGCATGGATTCAACGGCG+AGG | 0.716779 | tig0020311:-15369 | None:intergenic |
| TGTGGGGTTAAGAAATACAG+GGG | 0.744054 | tig0020311:+15908 | Msa1379770:CDS |
| GTGGGGTTAAGAAATACAGG+GGG | 0.779226 | tig0020311:+15909 | Msa1379770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGTCTTTTT+TGG | + | tig0020311:15648-15667 | Msa1379770:intron | 10.0% |
| !! | TAGAAATTCAATAGAAAAAA+TGG | - | tig0020311:15556-15575 | None:intergenic | 15.0% |
| !!! | AAATTAATGTTACTTGATTT+TGG | + | tig0020311:15846-15865 | Msa1379770:intron | 15.0% |
| !!! | ATCTAATGAACTAATATTTT+GGG | - | tig0020311:16071-16090 | None:intergenic | 15.0% |
| !!! | AACTTCTTATTTGTTAATAA+AGG | + | tig0020311:16476-16495 | Msa1379770:intron | 15.0% |
| !! | TACAAGAATATAAATCTTAA+TGG | - | tig0020311:16943-16962 | None:intergenic | 15.0% |
| !!! | TCTATTTATAAGAGAAATTT+TGG | - | tig0020311:17098-17117 | None:intergenic | 15.0% |
| !!! | TACATGTTCTTTTTTTTTTT+TGG | - | tig0020311:17907-17926 | None:intergenic | 15.0% |
| !! | GAAGAAATTAGAGTTTAAAA+CGG | - | tig0020311:15453-15472 | None:intergenic | 20.0% |
| !!! | TTTTAAACTCTAATTTCTTC+AGG | + | tig0020311:15453-15472 | Msa1379770:intron | 20.0% |
| !!! | CATCTAATGAACTAATATTT+TGG | - | tig0020311:16072-16091 | None:intergenic | 20.0% |
| !! | CAAAATATTAGTTCATTAGA+TGG | + | tig0020311:16070-16089 | Msa1379770:intron | 20.0% |
| !! | AAATGAAACTTAAAAACCTA+AGG | - | tig0020311:16104-16123 | None:intergenic | 20.0% |
| !!! | AGGTTTTTAAGTTTCATTTT+AGG | + | tig0020311:16105-16124 | Msa1379770:intron | 20.0% |
| !!! | TTCTTATTTGTTAATAAAGG+AGG | + | tig0020311:16479-16498 | Msa1379770:intron | 20.0% |
| !!! | ATAACAATTTTTAACTAGTG+AGG | - | tig0020311:16561-16580 | None:intergenic | 20.0% |
| !! | TCACTAGTTAAAAATTGTTA+TGG | + | tig0020311:16560-16579 | Msa1379770:intron | 20.0% |
| !! | TTTGTTTACATAAGAATACT+GGG | + | tig0020311:16733-16752 | Msa1379770:intron | 20.0% |
| !!! | ATTATTTTCAGTACTAATGT+TGG | + | tig0020311:16852-16871 | Msa1379770:intron | 20.0% |
| !! | ATTTCTCTTATAAATAGAAC+CGG | + | tig0020311:17100-17119 | Msa1379770:intron | 20.0% |
| !! | TTAGCTATCATTTATTTCAT+TGG | + | tig0020311:17852-17871 | Msa1379770:three_prime_UTR | 20.0% |
| ! | AGGAAGTTAACAAGAATAAA+CGG | - | tig0020311:15412-15431 | None:intergenic | 25.0% |
| !!! | AACCATTGATTTCTATTTAC+AGG | + | tig0020311:15583-15602 | Msa1379770:intron | 25.0% |
| ! | TTTCTATTTACAGGTCTTAA+AGG | + | tig0020311:15592-15611 | Msa1379770:intron | 25.0% |
| ! | AAATACAAATACTGATGCTA+GGG | + | tig0020311:15685-15704 | Msa1379770:CDS | 25.0% |
| !!! | TCTTTACTTTTCAATTAACG+AGG | + | tig0020311:15975-15994 | Msa1379770:intron | 25.0% |
| !!! | AAGCTTTTGAAAAATTAAGG+TGG | - | tig0020311:16350-16369 | None:intergenic | 25.0% |
| !!! | GTGAAGCTTTTGAAAAATTA+AGG | - | tig0020311:16353-16372 | None:intergenic | 25.0% |
| !! | CTTTGTTTACATAAGAATAC+TGG | + | tig0020311:16732-16751 | Msa1379770:intron | 25.0% |
| ! | GAAAGAAAAATAATGTTGCT+TGG | + | tig0020311:16874-16893 | Msa1379770:intron | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | tig0020311:17016-17035 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | tig0020311:17013-17032 | Msa1379770:intron | 25.0% |
| !!! | TTCAGAAAGCACAATTTTTA+TGG | + | tig0020311:17401-17420 | Msa1379770:intron | 25.0% |
| ! | GCTAAATGAATGTATTTACA+TGG | + | tig0020311:17456-17475 | Msa1379770:intron | 25.0% |
| !! | AAATGTAGGAATTTGATAAC+TGG | + | tig0020311:17483-17502 | Msa1379770:intron | 25.0% |
| !! | AATGTAGGAATTTGATAACT+GGG | + | tig0020311:17484-17503 | Msa1379770:intron | 25.0% |
| !! | AAATTTCCTCTTTTCCTTTT+TGG | + | tig0020311:17553-17572 | Msa1379770:intron | 25.0% |
| ! | GGATATTAATTTAGCCAAAA+AGG | - | tig0020311:17570-17589 | None:intergenic | 25.0% |
| !! | ATTTTGCTTTCGTCAAAAAA+AGG | - | tig0020311:17812-17831 | None:intergenic | 25.0% |
| GACCTGTAAATAGAAATCAA+TGG | - | tig0020311:15588-15607 | None:intergenic | 30.0% | |
| CAAATACAAATACTGATGCT+AGG | + | tig0020311:15684-15703 | Msa1379770:CDS | 30.0% | |
| !! | TTGCTTTTATTTGAGGTGAT+TGG | + | tig0020311:15709-15728 | Msa1379770:intron | 30.0% |
| ! | GTTACTTGATTTTGGATTGT+AGG | + | tig0020311:15854-15873 | Msa1379770:intron | 30.0% |
| !! | AGTTTCATTTTAGGTGATGA+AGG | + | tig0020311:16114-16133 | Msa1379770:intron | 30.0% |
| !! | GTTTCATTTTAGGTGATGAA+GGG | + | tig0020311:16115-16134 | Msa1379770:intron | 30.0% |
| AGCTTCACTTTGTAAAATCA+TGG | + | tig0020311:16365-16384 | Msa1379770:intron | 30.0% | |
| TTCACTTTGTAAAATCATGG+TGG | + | tig0020311:16368-16387 | Msa1379770:intron | 30.0% | |
| ATTAACAGATTCTGCATGTT+TGG | - | tig0020311:16426-16445 | None:intergenic | 30.0% | |
| AACATGCAGAATCTGTTAAT+TGG | + | tig0020311:16426-16445 | Msa1379770:intron | 30.0% | |
| !! | TATAACTTTAAGACAGGACT+AGG | + | tig0020311:16502-16521 | Msa1379770:intron | 30.0% |
| AGGTGATACTTAAACAATTC+TGG | - | tig0020311:16541-16560 | None:intergenic | 30.0% | |
| AATTTGACATTGACACACAA+TGG | - | tig0020311:16900-16919 | None:intergenic | 30.0% | |
| !! | ATTTTATTTGCTTGTTCGTC+TGG | + | tig0020311:16917-16936 | Msa1379770:intron | 30.0% |
| TTAGAAGTGATTGCATTCTA+CGG | - | tig0020311:16974-16993 | None:intergenic | 30.0% | |
| CTATATAGTGTTCATTAAGC+AGG | - | tig0020311:17178-17197 | None:intergenic | 30.0% | |
| GAACACTATATAGCATCATT+AGG | + | tig0020311:17185-17204 | Msa1379770:intron | 30.0% | |
| ATGGTACTTACATTGTTTGT+TGG | + | tig0020311:17420-17439 | Msa1379770:intron | 30.0% | |
| ! | TGTTTGTTGGAATAATTGTG+TGG | + | tig0020311:17433-17452 | Msa1379770:intron | 30.0% |
| ! | GTTTGTTGGAATAATTGTGT+GGG | + | tig0020311:17434-17453 | Msa1379770:intron | 30.0% |
| ATTTACATGGTTGCAAATGT+AGG | + | tig0020311:17469-17488 | Msa1379770:intron | 30.0% | |
| ATTTAGCCAAAAAGGAAAAG+AGG | - | tig0020311:17562-17581 | None:intergenic | 30.0% | |
| GCTAAATTAATATCCCAAAC+AGG | + | tig0020311:17575-17594 | Msa1379770:intron | 30.0% | |
| !! | GGTGTTTGATTTTGTGTATG+AGG | - | tig0020311:15432-15451 | None:intergenic | 35.0% |
| AAACTCTAATTTCTTCAGGC+CGG | + | tig0020311:15457-15476 | Msa1379770:intron | 35.0% | |
| !! | CTAGGGTTTGCTTTTATTTG+AGG | + | tig0020311:15702-15721 | Msa1379770:intron | 35.0% |
| ! | TTTGAGGTGATTGGTTGATT+TGG | + | tig0020311:15718-15737 | Msa1379770:intron | 35.0% |
| ATGTGGGGTTAAGAAATACA+GGG | + | tig0020311:15907-15926 | Msa1379770:CDS | 35.0% | |
| ! | TTTGTTCCTTGACTCTGAAA+TGG | + | tig0020311:16193-16212 | Msa1379770:intron | 35.0% |
| CAAATTCCATTTCAGAGTCA+AGG | - | tig0020311:16202-16221 | None:intergenic | 35.0% | |
| !! | GATTTTGTGTTACTCTTGCT+TGG | + | tig0020311:16230-16249 | Msa1379770:intron | 35.0% |
| TGGATAACAAAGTGCAAGTT+TGG | + | tig0020311:16292-16311 | Msa1379770:intron | 35.0% | |
| TGAAAAATTAAGGTGGCTCA+TGG | - | tig0020311:16343-16362 | None:intergenic | 35.0% | |
| TAATTGGACTTTGCACATCT+TGG | + | tig0020311:16442-16461 | Msa1379770:intron | 35.0% | |
| !! | AGGAGGTATAACTTTAAGAC+AGG | + | tig0020311:16496-16515 | Msa1379770:intron | 35.0% |
| ATCTGAAAAGGGGAAAATAC+CGG | + | tig0020311:16609-16628 | Msa1379770:intron | 35.0% | |
| CTGCTATATATGCTAGCATT+GGG | + | tig0020311:16699-16718 | Msa1379770:intron | 35.0% | |
| TAAGAATACTGGGATATGTG+TGG | + | tig0020311:16743-16762 | Msa1379770:intron | 35.0% | |
| ! | AGATTTTACCTACCAAAGAG+AGG | + | tig0020311:16772-16791 | Msa1379770:intron | 35.0% |
| TAGAAGTGATTGCATTCTAC+GGG | - | tig0020311:16973-16992 | None:intergenic | 35.0% | |
| TCTAATCATATTACTCCCTC+TGG | + | tig0020311:16989-17008 | Msa1379770:intron | 35.0% | |
| CTCTTATAAATAGGACCAGA+GGG | - | tig0020311:17007-17026 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGGACCAG+AGG | - | tig0020311:17008-17027 | None:intergenic | 35.0% | |
| TCTCTTATAAATAGAACCGG+AGG | + | tig0020311:17103-17122 | Msa1379770:intron | 35.0% | |
| CTCTTATAAATAGAACCGGA+GGG | + | tig0020311:17104-17123 | Msa1379770:intron | 35.0% | |
| TATACTGCTGTAAGGAAATC+TGG | + | tig0020311:17218-17237 | Msa1379770:intron | 35.0% | |
| AATGAATCTAGTCACCAAAC+TGG | - | tig0020311:17247-17266 | None:intergenic | 35.0% | |
| AATGCACTGCATGTTATTAG+TGG | + | tig0020311:17275-17294 | Msa1379770:intron | 35.0% | |
| ! | CAACACTGTGTTGTAGTTTT+GGG | + | tig0020311:17363-17382 | Msa1379770:intron | 35.0% |
| !! | AACACTGTGTTGTAGTTTTG+GGG | + | tig0020311:17364-17383 | Msa1379770:intron | 35.0% |
| CTTTCTGAATCAAAGCCAAT+TGG | - | tig0020311:17390-17409 | None:intergenic | 35.0% | |
| TAATATCCCAAACAGGTCAA+TGG | + | tig0020311:17582-17601 | Msa1379770:intron | 35.0% | |
| ATCAAACCATTGACCTGTTT+GGG | - | tig0020311:17591-17610 | None:intergenic | 35.0% | |
| AATCAAACCATTGACCTGTT+TGG | - | tig0020311:17592-17611 | None:intergenic | 35.0% | |
| AAACAGGTCAATGGTTTGAT+TGG | + | tig0020311:17591-17610 | Msa1379770:intron | 35.0% | |
| AACAGGTCAATGGTTTGATT+GGG | + | tig0020311:17592-17611 | Msa1379770:intron | 35.0% | |
| ACAGAAAACAGAAACCAAAC+CGG | - | tig0020311:17682-17701 | None:intergenic | 35.0% | |
| TTGTTAGAAACTGTGACAGA+AGG | + | tig0020311:17736-17755 | Msa1379770:three_prime_UTR | 35.0% | |
| AATACTAGTGCCATGGGAAA+GGG | - | tig0020311:15284-15303 | None:intergenic | 40.0% | |
| ATATTCTCCTTCTACCGACA+CGG | - | tig0020311:15313-15332 | None:intergenic | 40.0% | |
| TTTACCACAAAAGAAGCCCT+GGG | - | tig0020311:15622-15641 | None:intergenic | 40.0% | |
| ! | TTTTACCACAAAAGAAGCCC+TGG | - | tig0020311:15623-15642 | None:intergenic | 40.0% |
| !! | AGGTGATTGGTTGATTTGGT+TGG | + | tig0020311:15722-15741 | Msa1379770:intron | 40.0% |
| !! | GGTGATTGGTTGATTTGGTT+GGG | + | tig0020311:15723-15742 | Msa1379770:intron | 40.0% |
| ! | CAAACTCGGTTCGTGTTTAT+GGG | + | tig0020311:15762-15781 | Msa1379770:CDS | 40.0% |
| ! | TTTTCAGCATCACTCGATGT+GGG | + | tig0020311:15891-15910 | Msa1379770:CDS | 40.0% |
| GATGTGGGGTTAAGAAATAC+AGG | + | tig0020311:15906-15925 | Msa1379770:CDS | 40.0% | |
| TGTGGGGTTAAGAAATACAG+GGG | + | tig0020311:15908-15927 | Msa1379770:CDS | 40.0% | |
| TTAGATGGAACAGAGTCCTT+AGG | + | tig0020311:16085-16104 | Msa1379770:intron | 40.0% | |
| AGAGTCAAGGAACAAAGTCT+AGG | - | tig0020311:16189-16208 | None:intergenic | 40.0% | |
| GACAAAGCCCTATAGGTTAT+AGG | + | tig0020311:16256-16275 | Msa1379770:intron | 40.0% | |
| CCAAGTGCCTATAACCTATA+GGG | - | tig0020311:16266-16285 | None:intergenic | 40.0% | |
| TTATAGGCACTTGGCAATCA+TGG | + | tig0020311:16272-16291 | Msa1379770:intron | 40.0% | |
| TGCATGTTTGGTATCACTGT+GGG | - | tig0020311:16414-16433 | None:intergenic | 40.0% | |
| ATCAGTCGCTGATCTGAAAA+GGG | + | tig0020311:16598-16617 | Msa1379770:intron | 40.0% | |
| CTGAGCAAGTTAATCTTTGC+CGG | - | tig0020311:16631-16650 | None:intergenic | 40.0% | |
| ! | AACTTGCTCAGGACACTTAT+TGG | + | tig0020311:16640-16659 | Msa1379770:intron | 40.0% |
| GCTGCTATATATGCTAGCAT+TGG | + | tig0020311:16698-16717 | Msa1379770:intron | 40.0% | |
| AATGCCTGATTGCAGAAACA+TGG | + | tig0020311:16815-16834 | Msa1379770:intron | 40.0% | |
| ATGCCTGATTGCAGAAACAT+GGG | + | tig0020311:16816-16835 | Msa1379770:intron | 40.0% | |
| AGAAGTGATTGCATTCTACG+GGG | - | tig0020311:16972-16991 | None:intergenic | 40.0% | |
| CTTGCTTGTATACTGCTGTA+AGG | + | tig0020311:17210-17229 | Msa1379770:intron | 40.0% | |
| AGGAAATCTGGATTCCAGTT+TGG | + | tig0020311:17230-17249 | Msa1379770:intron | 40.0% | |
| ! | GCAACACTGTGTTGTAGTTT+TGG | + | tig0020311:17362-17381 | Msa1379770:intron | 40.0% |
| ACAGGTCAATGGTTTGATTG+GGG | + | tig0020311:17593-17612 | Msa1379770:intron | 40.0% | |
| GTATCAAGAAACATGAGTCG+CGG | - | tig0020311:17766-17785 | None:intergenic | 40.0% | |
| CAATACTAGTGCCATGGGAA+AGG | - | tig0020311:15285-15304 | None:intergenic | 45.0% | |
| ! | GTGTCGGTAGAAGGAGAATA+TGG | + | tig0020311:15312-15331 | Msa1379770:exon | 45.0% |
| GACACGAAGCATGGATTCAA+CGG | - | tig0020311:15377-15396 | None:intergenic | 45.0% | |
| GTTGAATCCATGCTTCGTGT+CGG | + | tig0020311:15376-15395 | Msa1379770:CDS | 45.0% | |
| CCTTGTAGAGTTGCGTCATA+GGG | - | tig0020311:15508-15527 | None:intergenic | 45.0% | |
| ACCTTGTAGAGTTGCGTCAT+AGG | - | tig0020311:15509-15528 | None:intergenic | 45.0% | |
| !! | AGGTCTTAAAGGCATTCCCA+GGG | + | tig0020311:15603-15622 | Msa1379770:intron | 45.0% |
| GTGTCAAGTACAGGCAAACT+CGG | + | tig0020311:15748-15767 | Msa1379770:intron | 45.0% | |
| ! | GCAAACTCGGTTCGTGTTTA+TGG | + | tig0020311:15761-15780 | Msa1379770:CDS | 45.0% |
| CGTGTTTATGGGACTCAATG+TGG | + | tig0020311:15773-15792 | Msa1379770:CDS | 45.0% | |
| TGGATTGTAGGACTTGTAGC+TGG | + | tig0020311:15866-15885 | Msa1379770:intron | 45.0% | |
| ! | GTTTTCAGCATCACTCGATG+TGG | + | tig0020311:15890-15909 | Msa1379770:CDS | 45.0% |
| TTTCAGCATCACTCGATGTG+GGG | + | tig0020311:15892-15911 | Msa1379770:CDS | 45.0% | |
| GTGGGGTTAAGAAATACAGG+GGG | + | tig0020311:15909-15928 | Msa1379770:CDS | 45.0% | |
| TTGGATCGACAAAGCCCTAT+AGG | + | tig0020311:16249-16268 | Msa1379770:intron | 45.0% | |
| CCCTATAGGTTATAGGCACT+TGG | + | tig0020311:16263-16282 | Msa1379770:intron | 45.0% | |
| GCCAAGTGCCTATAACCTAT+AGG | - | tig0020311:16267-16286 | None:intergenic | 45.0% | |
| GTGCAAGTTTGGTATCACAG+TGG | + | tig0020311:16303-16322 | Msa1379770:intron | 45.0% | |
| CTGTGGGTTCAACTGAATCA+AGG | - | tig0020311:16398-16417 | None:intergenic | 45.0% | |
| CTGCATGTTTGGTATCACTG+TGG | - | tig0020311:16415-16434 | None:intergenic | 45.0% | |
| TCAGATCAGCGACTGATGTT+AGG | - | tig0020311:16595-16614 | None:intergenic | 45.0% | |
| CATCAGTCGCTGATCTGAAA+AGG | + | tig0020311:16597-16616 | Msa1379770:intron | 45.0% | |
| TCAGTCGCTGATCTGAAAAG+GGG | + | tig0020311:16599-16618 | Msa1379770:intron | 45.0% | |
| !! | CGGCAAAGATTAACTTGCTC+AGG | + | tig0020311:16629-16648 | Msa1379770:intron | 45.0% |
| TTGAGCATGTGTCCTCTCTT+TGG | - | tig0020311:16787-16806 | None:intergenic | 45.0% | |
| TGCCTGATTGCAGAAACATG+GGG | + | tig0020311:16817-16836 | Msa1379770:intron | 45.0% | |
| AGCAAGCAAAATACTCCCTC+CGG | - | tig0020311:17122-17141 | None:intergenic | 45.0% | |
| !!! | GTTGTAGTTTTGGGGCCAAT+TGG | + | tig0020311:17372-17391 | Msa1379770:intron | 45.0% |
| CAGGTCAATGGTTTGATTGG+GGG | + | tig0020311:17594-17613 | Msa1379770:intron | 45.0% | |
| GAAGTCGAATGCAGGTGTTT+GGG | + | tig0020311:17652-17671 | Msa1379770:CDS | 45.0% | |
| CAGCGCAATACTAGTGCCAT+GGG | - | tig0020311:15290-15309 | None:intergenic | 50.0% | |
| AAGCATGGATTCAACGGCGA+GGG | - | tig0020311:15371-15390 | None:intergenic | 50.0% | |
| ATCCATGCTTCGTGTCGGAA+CGG | + | tig0020311:15381-15400 | Msa1379770:CDS | 50.0% | |
| TTCTTCAGGCCGGTGCAATT+TGG | + | tig0020311:15467-15486 | Msa1379770:intron | 50.0% | |
| TCTTCAGGCCGGTGCAATTT+GGG | + | tig0020311:15468-15487 | Msa1379770:intron | 50.0% | |
| ACACAACCCCCAAATTGCAC+CGG | - | tig0020311:15479-15498 | None:intergenic | 50.0% | |
| GCAATTTGGGGGTTGTGTAC+TGG | + | tig0020311:15481-15500 | Msa1379770:CDS | 50.0% | |
| CCCTATGACGCAACTCTACA+AGG | + | tig0020311:15505-15524 | Msa1379770:CDS | 50.0% | |
| !! | CAGGTCTTAAAGGCATTCCC+AGG | + | tig0020311:15602-15621 | Msa1379770:intron | 50.0% |
| ! | CATTCCCAGGGCTTCTTTTG+TGG | + | tig0020311:15615-15634 | Msa1379770:CDS | 50.0% |
| ! | GGTTGGGTTGTGTCAAGTAC+AGG | + | tig0020311:15739-15758 | Msa1379770:intron | 50.0% |
| GCATGTGTCCTCTCTTTGGT+AGG | - | tig0020311:16783-16802 | None:intergenic | 50.0% | |
| GCCTGATTGCAGAAACATGG+GGG | + | tig0020311:16818-16837 | Msa1379770:intron | 50.0% | |
| TTGCCATAGTGTTGCGAGCA+TGG | + | tig0020311:17146-17165 | Msa1379770:intron | 50.0% | |
| TCACCATGCTCGCAACACTA+TGG | - | tig0020311:17152-17171 | None:intergenic | 50.0% | |
| TAGGACACGAAGTCGAATGC+AGG | + | tig0020311:17644-17663 | Msa1379770:CDS | 50.0% | |
| CGAAGTCGAATGCAGGTGTT+TGG | + | tig0020311:17651-17670 | Msa1379770:CDS | 50.0% | |
| TCGAATGCAGGTGTTTGGGA+TGG | + | tig0020311:17656-17675 | Msa1379770:CDS | 50.0% | |
| AAAATGCCCGCCCTTTCCCA+TGG | + | tig0020311:15271-15290 | Msa1379770:five_prime_UTR | 55.0% | |
| ACTAGTGCCATGGGAAAGGG+CGG | - | tig0020311:15281-15300 | None:intergenic | 55.0% | |
| GCAGCGCAATACTAGTGCCA+TGG | - | tig0020311:15291-15310 | None:intergenic | 55.0% | |
| CTAGTATTGCGCTGCCGTGT+CGG | + | tig0020311:15296-15315 | Msa1379770:five_prime_UTR | 55.0% | |
| GAAGCATGGATTCAACGGCG+AGG | - | tig0020311:15372-15391 | None:intergenic | 55.0% | |
| TACCGTTCCGACACGAAGCA+TGG | - | tig0020311:15386-15405 | None:intergenic | 55.0% | |
| CTTCAGGCCGGTGCAATTTG+GGG | + | tig0020311:15469-15488 | Msa1379770:intron | 55.0% | |
| TTCAGGCCGGTGCAATTTGG+GGG | + | tig0020311:15470-15489 | Msa1379770:intron | 55.0% | |
| ! | AATACAGGGGGCGCAACGAT+TGG | + | tig0020311:15921-15940 | Msa1379770:CDS | 55.0% |
| ! | ATACAGGGGGCGCAACGATT+GGG | + | tig0020311:15922-15941 | Msa1379770:CDS | 55.0% |
| ! | GCCCCCATGTTTCTGCAATC+AGG | - | tig0020311:16822-16841 | None:intergenic | 55.0% |
| TTGATTGGGGGAGCTGTAGC+AGG | + | tig0020311:17606-17625 | Msa1379770:CDS | 55.0% | |
| ! | ATGCAGGTGTTTGGGATGGC+CGG | + | tig0020311:17660-17679 | Msa1379770:CDS | 55.0% |
| CTAGTGCCATGGGAAAGGGC+GGG | - | tig0020311:15280-15299 | None:intergenic | 60.0% | |
| AGCATGGAACGGCGTCGTTC+TGG | - | tig0020311:15345-15364 | None:intergenic | 60.0% | |
| GGCGAGGGATGAGCATGGAA+CGG | - | tig0020311:15356-15375 | None:intergenic | 60.0% | |
| TCAACGGCGAGGGATGAGCA+TGG | - | tig0020311:15361-15380 | None:intergenic | 60.0% | |
| CAGGTGCGACTGTTGCTGCT+AGG | + | tig0020311:17625-17644 | Msa1379770:CDS | 60.0% | |
| ! | GGTGTTTGGGATGGCCGGTT+TGG | + | tig0020311:17665-17684 | Msa1379770:CDS | 60.0% |
| ! | TGCGCTGCCGTGTCGGTAGA+AGG | + | tig0020311:15303-15322 | Msa1379770:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020311 | gene | 15254 | 18035 | 15254 | ID=Msa1379770;Name=Msa1379770 |
| tig0020311 | mRNA | 15254 | 18035 | 15254 | ID=Msa1379770-mRNA-1;Parent=Msa1379770;Name=Msa1379770-mRNA-1;_AED=0.20;_eAED=0.20;_QI=77|0.66|0.85|1|1|1|7|307|140 |
| tig0020311 | exon | 15254 | 15402 | 15254 | ID=Msa1379770-mRNA-1:exon:6795;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 15475 | 15526 | 15475 | ID=Msa1379770-mRNA-1:exon:6796;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 15605 | 15636 | 15605 | ID=Msa1379770-mRNA-1:exon:6797;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 15674 | 15706 | 15674 | ID=Msa1379770-mRNA-1:exon:6798;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 15761 | 15794 | 15761 | ID=Msa1379770-mRNA-1:exon:6799;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 15876 | 15943 | 15876 | ID=Msa1379770-mRNA-1:exon:6800;Parent=Msa1379770-mRNA-1 |
| tig0020311 | exon | 17597 | 18035 | 17597 | ID=Msa1379770-mRNA-1:exon:6801;Parent=Msa1379770-mRNA-1 |
| tig0020311 | five_prime_UTR | 15254 | 15330 | 15254 | ID=Msa1379770-mRNA-1:five_prime_utr;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15331 | 15402 | 15331 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15475 | 15526 | 15475 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15605 | 15636 | 15605 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15674 | 15706 | 15674 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15761 | 15794 | 15761 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 15876 | 15943 | 15876 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | CDS | 17597 | 17728 | 17597 | ID=Msa1379770-mRNA-1:cds;Parent=Msa1379770-mRNA-1 |
| tig0020311 | three_prime_UTR | 17729 | 18035 | 17729 | ID=Msa1379770-mRNA-1:three_prime_utr;Parent=Msa1379770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
