AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175130 MtrunA17_Chr1g0201311 96.451 479 17 0 1 479 1 479 0.0 961
Msa0175130 MtrunA17_Chr1g0201621 96.033 479 19 0 1 479 1 479 0.0 958
Msa0175130 MtrunA17_Chr3g0125251 41.026 234 135 3 12 244 1253 1484 7.28e-55 198
Msa0175130 MtrunA17_Chr1g0201321 93.976 83 5 0 271 353 1 83 6.46e-48 159
Msa0175130 MtrunA17_Chr6g0477001 43.519 216 118 4 11 226 42 253 2.08e-47 167
Msa0175130 MtrunA17_Chr2g0305371 34.677 248 145 5 1 248 266 496 5.28e-41 153
Msa0175130 MtrunA17_Chr2g0297191 39.516 124 74 1 96 219 1044 1166 1.40e-22 101
Msa0175130 MtrunA17_Chr5g0403241 37.037 162 87 3 73 219 1341 1502 1.80e-22 101
Msa0175130 MtrunA17_Chr4g0075321 35.366 164 87 3 73 219 898 1059 3.94e-22 100
Msa0175130 MtrunA17_Chr5g0401921 36.095 169 92 3 42 203 672 831 4.36e-21 97.1
Msa0175130 MtrunA17_Chr7g0235081 39.844 128 70 1 85 205 195 322 2.69e-20 92.0
Msa0175130 MtrunA17_Chr7g0275611 37.500 152 89 4 76 223 814 963 1.01e-19 92.8
Msa0175130 MtrunA17_Chr3g0126701 35.570 149 92 3 78 223 915 1062 1.32e-19 92.4
Msa0175130 MtrunA17_Chr1g0147121 35.099 151 94 3 76 223 884 1033 2.48e-19 91.7
Msa0175130 MtrunA17_Chr8g0354821 29.952 207 95 6 61 224 489 688 3.30e-19 90.9
Msa0175130 MtrunA17_Chr8g0347071 35.762 151 93 3 76 223 799 948 3.95e-19 90.9
Msa0175130 MtrunA17_Chr8g0373821 35.625 160 89 4 73 219 375 533 6.55e-19 89.4
Msa0175130 MtrunA17_Chr5g0399801 33.838 198 93 9 61 223 894 1088 1.18e-18 89.4
Msa0175130 MtrunA17_Chr7g0221611 36.306 157 90 3 90 245 911 1058 1.19e-18 89.4
Msa0175130 MtrunA17_Chr1g0149581 34.752 141 87 2 88 223 1525 1665 2.86e-18 88.6
Msa0175130 MtrunA17_Chr1g0170651 38.182 165 68 9 69 220 399 542 2.97e-18 87.8
Msa0175130 MtrunA17_Chr1g0149611 36.620 142 83 3 88 223 367 507 3.28e-18 87.4
Msa0175130 MtrunA17_Chr1g0194631 36.641 131 81 1 72 202 598 726 3.55e-18 87.8
Msa0175130 MtrunA17_Chr4g0003511 32.000 200 88 9 61 220 857 1048 6.37e-18 87.0
Msa0175130 MtrunA17_Chr7g0255181 31.351 185 103 6 61 223 522 704 1.63e-17 85.5
Msa0175130 MtrunA17_Chr4g0003501 31.959 194 94 9 61 220 762 951 8.66e-17 83.6
Msa0175130 MtrunA17_Chr3g0080761 30.964 197 97 7 61 219 464 659 7.88e-15 77.0
Msa0175130 MtrunA17_Chr7g0232981 29.082 196 102 7 37 203 301 488 9.15e-14 73.6
Msa0175130 MtrunA17_Chr6g0460921 31.126 151 88 4 67 201 247 397 1.95e-13 72.0
Msa0175130 MtrunA17_Chr7g0270001 36.697 109 67 1 95 203 159 265 2.01e-13 70.9
Msa0175130 MtrunA17_Chr7g0252211 29.208 202 103 7 61 223 556 756 1.12e-11 67.4
Msa0175130 MtrunA17_Chr1g0183321 27.933 179 97 6 67 219 569 741 1.68e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175130 AT1G76710.2 63.542 480 160 5 6 471 11 489 0.0 612
Msa0175130 AT1G76710.1 63.542 480 160 5 6 471 11 489 0.0 612
Msa0175130 AT1G76710.4 62.372 489 160 6 6 471 11 498 0.0 604
Msa0175130 AT1G76710.3 60.158 507 160 6 6 471 11 516 0.0 597
Msa0175130 AT1G77300.1 41.631 233 128 4 15 244 958 1185 8.28e-56 201
Msa0175130 AT1G77300.2 41.631 233 128 4 15 244 958 1185 9.09e-56 201
Msa0175130 AT4G30860.1 37.668 223 126 5 7 228 259 469 5.71e-40 150
Msa0175130 AT3G59960.3 46.053 152 81 1 75 226 102 252 3.92e-34 130
Msa0175130 AT3G59960.2 46.053 152 81 1 75 226 102 252 3.92e-34 130
Msa0175130 AT3G59960.4 46.053 152 81 1 75 226 102 252 3.92e-34 130
Msa0175130 AT3G59960.1 46.053 152 81 1 75 226 102 252 1.94e-33 129
Msa0175130 AT2G44150.1 45.395 152 82 1 75 226 107 257 2.69e-33 129
Msa0175130 AT5G42400.7 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.2 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.8 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.5 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.4 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.1 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.3 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT5G42400.6 41.935 124 71 1 96 219 1261 1383 1.27e-24 108
Msa0175130 AT1G02580.1 33.728 169 95 3 48 211 518 674 6.45e-20 93.6
Msa0175130 AT1G05830.2 35.673 171 97 5 68 234 900 1061 1.29e-19 92.8
Msa0175130 AT1G05830.4 35.673 171 97 5 68 234 900 1061 1.29e-19 92.8
Msa0175130 AT1G05830.1 35.673 171 97 5 68 234 900 1061 1.29e-19 92.8
Msa0175130 AT1G05830.3 35.673 171 97 5 68 234 900 1061 1.29e-19 92.8
Msa0175130 AT4G27910.1 35.762 151 93 3 76 223 877 1026 1.31e-19 92.8
Msa0175130 AT2G23380.1 36.364 154 89 2 50 203 725 869 2.54e-19 92.0
Msa0175130 AT2G35160.2 35.754 179 89 8 61 223 625 793 3.35e-19 91.3
Msa0175130 AT2G35160.3 35.754 179 89 8 61 223 625 793 3.35e-19 91.3
Msa0175130 AT2G35160.1 35.754 179 89 8 61 223 625 793 3.35e-19 91.3
Msa0175130 AT2G35160.4 35.754 179 89 8 61 223 625 793 3.35e-19 91.3
Msa0175130 AT2G35160.5 35.754 179 89 8 61 223 589 757 3.51e-19 91.3
Msa0175130 AT2G23380.2 36.364 154 89 2 50 203 498 642 5.70e-19 90.5
Msa0175130 AT2G23740.1 37.255 153 75 4 66 200 1199 1348 8.17e-19 90.5
Msa0175130 AT2G23740.3 37.255 153 75 4 66 200 1206 1355 9.43e-19 90.5
Msa0175130 AT2G23740.6 37.255 153 75 4 66 200 1206 1355 9.43e-19 90.5
Msa0175130 AT2G23740.2 37.255 153 75 4 66 200 1206 1355 9.43e-19 90.5
Msa0175130 AT3G61740.2 36.601 153 90 4 76 223 831 981 1.57e-18 89.4
Msa0175130 AT3G61740.1 36.601 153 90 4 76 223 867 1017 2.03e-18 89.4
Msa0175130 AT3G03750.2 35.000 180 97 6 59 219 167 345 2.20e-18 87.0
Msa0175130 AT2G31650.1 35.088 171 98 5 68 234 879 1040 7.40e-18 87.4
Msa0175130 AT4G02020.1 35.878 131 82 1 72 202 695 823 1.59e-17 86.3
Msa0175130 AT5G53430.1 34.899 149 93 3 78 223 895 1042 2.14e-17 85.9
Msa0175130 AT1G17770.1 32.105 190 93 8 65 219 500 688 3.85e-16 81.6
Msa0175130 AT2G22740.2 32.020 203 97 9 58 223 591 789 1.45e-15 80.1
Msa0175130 AT2G22740.1 32.020 203 97 9 58 223 591 789 1.45e-15 80.1
Msa0175130 AT5G04940.2 29.146 199 104 7 61 224 474 670 1.08e-14 77.0
Msa0175130 AT5G04940.1 29.146 199 104 7 61 224 474 670 1.08e-14 77.0
Msa0175130 AT2G23740.4 39.286 112 51 3 66 163 1206 1314 3.12e-13 72.8
Msa0175130 AT2G23740.5 39.286 112 51 3 66 163 1206 1314 3.12e-13 72.8
Msa0175130 AT2G24740.1 30.928 194 90 8 70 224 567 755 4.86e-13 72.0
Msa0175130 AT3G04380.1 27.174 184 96 7 67 221 285 459 1.93e-11 66.6
Msa0175130 AT3G04380.4 27.174 184 96 7 67 221 285 459 2.11e-11 66.2
Msa0175130 AT3G04380.2 27.174 184 96 7 67 221 258 432 2.19e-11 66.2
Msa0175130 AT3G04380.6 27.174 184 96 7 67 221 258 432 2.21e-11 66.2
Msa0175130 AT3G04380.3 27.174 184 96 7 67 221 269 443 2.68e-11 66.2
Msa0175130 AT3G04380.5 27.174 184 96 7 67 221 242 416 2.81e-11 65.9

Find 132 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTTGTTGGTGAAAA+AGG 0.121521 1_4:-60968163 Msa0175130:five_prime_UTR
GACCTTGAATTTCATAAGTA+TGG 0.188096 1_4:+60964342 None:intergenic
AGGCCGAGGGTGGGGTCTTC+TGG 0.188537 1_4:-60964550 Msa0175130:CDS
CTAGCTTCTGTTATGAATTT+CGG 0.234343 1_4:+60961657 None:intergenic
GTGCTTCCTTTGATGCTAAA+AGG 0.263819 1_4:+60962597 None:intergenic
CATCTCTACCAAAAGATCTA+AGG 0.291533 1_4:-60962675 Msa0175130:CDS
CAAGATCCTGTTTGGTATCT+TGG 0.298263 1_4:+60962753 None:intergenic
CAAGATTTATAAACCATTCC+TGG 0.303845 1_4:-60964168 Msa0175130:intron
CAGTGCTGGTTAATACATTT+AGG 0.324830 1_4:+60965653 None:intergenic
CAATAAGAGGAATGGGAAAA+TGG 0.327420 1_4:+60967975 None:intergenic
AGAAGCGAGAAAAGGGGTTT+GGG 0.332370 1_4:+60968011 None:intergenic
GCACTGGAAGATATTCCTAT+TGG 0.334570 1_4:-60963947 Msa0175130:CDS
CAAACTGTGAGACAAGAAAA+TGG 0.346413 1_4:-60964003 Msa0175130:CDS
AGCAGGAGGATACTTATCTA+TGG 0.346424 1_4:-60963404 Msa0175130:intron
ATGATCGAAGAAATTTGAAT+AGG 0.356481 1_4:+60968061 None:intergenic
CAGAAGCGAGAAAAGGGGTT+TGG 0.375404 1_4:+60968010 None:intergenic
ATAAGTATGGGATCTGCGTT+TGG 0.395386 1_4:+60964355 None:intergenic
AAGATCCTGTTTGGTATCTT+GGG 0.400986 1_4:+60962754 None:intergenic
ATCCTTCTCGTGTTCTTCAA+TGG 0.405165 1_4:+60962053 None:intergenic
GGATTTGTTTATCAGGTCCT+AGG 0.410964 1_4:+60961755 None:intergenic
TGATCGAAGAAATTTGAATA+GGG 0.412142 1_4:+60968062 None:intergenic
ATTCTTTATACAATGAAATA+CGG 0.412721 1_4:-60962080 Msa0175130:CDS
TCCTCCGCAGAGTCATATAA+AGG 0.419793 1_4:+60962956 None:intergenic
TATGATACAGTAAAATTTGT+TGG 0.426298 1_4:-60968172 Msa0175130:five_prime_UTR
ATTCTGTGAATCATCAATTA+CGG 0.429873 1_4:+60961829 None:intergenic
CTCAAATGTTCTGAATTCCT+TGG 0.432418 1_4:-60963854 Msa0175130:CDS
TTTCATTGTATAAAGAATCA+AGG 0.435719 1_4:+60962085 None:intergenic
TTCTCGTGTTCTTCAATGGC+AGG 0.436989 1_4:+60962057 None:intergenic
CTGAATTCGATTGGGATCAA+TGG 0.457029 1_4:-60962833 Msa0175130:CDS
AGCTTGCAGAAGCGAGAAAA+GGG 0.459582 1_4:+60968004 None:intergenic
TGAGTTAGTGCTGGTGCACT+AGG 0.462064 1_4:+60961697 None:intergenic
TATTCCTATTGGAACTGAAC+TGG 0.465129 1_4:-60963936 Msa0175130:CDS
TCCCATACTTATGAAATTCA+AGG 0.467960 1_4:-60964344 Msa0175130:intron
TTGAAGTGGTTTACCAGGAA+TGG 0.469527 1_4:+60964155 None:intergenic
ACCTTGAATTTCATAAGTAT+GGG 0.471125 1_4:+60964343 None:intergenic
CGCATTCAAAGTAACACTGC+TGG 0.473536 1_4:-60962707 Msa0175130:CDS
ATGCCGCTAGGGCAAAATCC+AGG 0.473906 1_4:+60965622 None:intergenic
CCTGACAGTGCATGTGGAGA+TGG 0.474108 1_4:-60965679 Msa0175130:CDS
AGTAGCAGAGAAGTGGATAC+AGG 0.474675 1_4:-60962007 Msa0175130:CDS
GTTCAACCGCTGAATTCGAT+TGG 0.477723 1_4:-60962842 Msa0175130:CDS
TCCATCGATGCAACTAGAAA+AGG 0.481552 1_4:-60964199 Msa0175130:CDS
TATGCCAGTTCAGTTCCAAT+AGG 0.481653 1_4:+60963932 None:intergenic
AACTCTTCTTGCGTTTGCGT+TGG 0.483560 1_4:+60968108 None:intergenic
AAAACTGAAGGCCGAGGGTG+GGG 0.484563 1_4:-60964558 Msa0175130:CDS
GAACAAAAGTTGGCAATAAG+AGG 0.484609 1_4:+60967962 None:intergenic
TCGATTGGGATCAATGGCTT+AGG 0.486502 1_4:-60962827 Msa0175130:CDS
AGCTTTCAGTATAATAGCCA+TGG 0.489595 1_4:+60962895 None:intergenic
ACTGCAAGTGCTGGTCTACT+AGG 0.492481 1_4:+60961581 None:intergenic
CGAAATTCATAACAGAAGCT+AGG 0.492911 1_4:-60961656 Msa0175130:three_prime_UTR
AAGGCACCCGGCCAAGCAAA+AGG 0.495569 1_4:-60961910 Msa0175130:CDS
AATGGTTTATAAATCTTGAA+AGG 0.496354 1_4:+60964173 None:intergenic
TGTTGCTTGTACTCCTCAAA+AGG 0.496894 1_4:-60961929 Msa0175130:CDS
AAAGTTGGCAATAAGAGGAA+TGG 0.497255 1_4:+60967967 None:intergenic
TTCAACCGCTGAATTCGATT+GGG 0.499606 1_4:-60962841 Msa0175130:CDS
CCATCTCCACATGCACTGTC+AGG 0.499632 1_4:+60965679 None:intergenic
AAGTTGGCAATAAGAGGAAT+GGG 0.502123 1_4:+60967968 None:intergenic
ATCTCTACCAAAAGATCTAA+GGG 0.502128 1_4:-60962674 Msa0175130:CDS
TGTCGTAGATACACTGTCTT+GGG 0.502526 1_4:+60962029 None:intergenic
ACCAGCACTGAATGCACCCC+TGG 0.503846 1_4:-60965640 Msa0175130:CDS
GTGGGGTCTTCTGGCTGATG+AGG 0.510417 1_4:-60964541 Msa0175130:CDS
TCTGGCTGATGAGGAAATCA+AGG 0.511018 1_4:-60964532 Msa0175130:intron
TGCCGCTAGGGCAAAATCCA+GGG 0.511652 1_4:+60965623 None:intergenic
AAGCTTGCAGAAGCGAGAAA+AGG 0.513314 1_4:+60968003 None:intergenic
CTAGGTTCTGTTATGAACTT+CGG 0.514327 1_4:+60961773 None:intergenic
TACCATATGAGAACAAAAGT+TGG 0.516571 1_4:+60967952 None:intergenic
AAGAGTTGGAATATTTGCAC+TGG 0.522066 1_4:-60963963 Msa0175130:CDS
TTCATTGTATAAAGAATCAA+GGG 0.526900 1_4:+60962086 None:intergenic
TCCAGGGGTGCATTCAGTGC+TGG 0.531693 1_4:+60965639 None:intergenic
AGTTGACAAACTGCAAGTGC+TGG 0.532077 1_4:+60961572 None:intergenic
CAGCCAGAAGACCCCACCCT+CGG 0.537785 1_4:+60964547 None:intergenic
ACAAAGTTATTTAAAACTGA+AGG 0.541788 1_4:-60964570 Msa0175130:CDS
CTGTCGTAGATACACTGTCT+TGG 0.543309 1_4:+60962028 None:intergenic
ACAAGAAAATGGAATGTCAT+GGG 0.544715 1_4:-60963992 Msa0175130:CDS
GAAGCGAGAAAAGGGGTTTG+GGG 0.546166 1_4:+60968012 None:intergenic
ATTGATGCAAAGTATGCAGC+TGG 0.547593 1_4:-60962620 Msa0175130:CDS
TTTAGCATCAAAGGAAGCAC+AGG 0.547737 1_4:-60962594 Msa0175130:CDS
GTTGTAAAACTTAACACGCC+CGG 0.550683 1_4:-60968197 None:intergenic
TGATTGATATGAATGTATTG+AGG 0.557044 1_4:+60967797 None:intergenic
TGAATGGTTTGGAGGTGCAA+AGG 0.560782 1_4:-60963897 Msa0175130:CDS
CTGACAGTGCATGTGGAGAT+GGG 0.561478 1_4:-60965678 Msa0175130:CDS
GCAGGAGGATACTTATCTAT+GGG 0.561610 1_4:-60963403 Msa0175130:intron
TAAAACTGAAGGCCGAGGGT+GGG 0.562493 1_4:-60964559 Msa0175130:CDS
GTACTCCCAAGATACCAAAC+AGG 0.564017 1_4:-60962759 Msa0175130:CDS
CTACGACAGTAGCAGAGAAG+TGG 0.567208 1_4:-60962014 Msa0175130:CDS
AGCATCAAAGGAAGCACAGG+AGG 0.568189 1_4:-60962591 Msa0175130:CDS
GACAAGAAAATGGAATGTCA+TGG 0.568296 1_4:-60963993 Msa0175130:CDS
GCATAAGAAGCAGAAGGAGG+AGG 0.570658 1_4:-60965740 Msa0175130:CDS
ATATTGCTATATGTGAATGC+AGG 0.572676 1_4:-60965717 Msa0175130:CDS
TTGATGATTCACAGAATACA+TGG 0.573245 1_4:-60961823 Msa0175130:three_prime_UTR
AAGCGAGAAAAGGGGTTTGG+GGG 0.578712 1_4:+60968013 None:intergenic
GATGAACTCACGACAAATGT+TGG 0.579014 1_4:-60962935 Msa0175130:CDS
GTCTACTAGGTAGCATAACA+TGG 0.583316 1_4:+60961594 None:intergenic
CGAAGTTCATAACAGAACCT+AGG 0.583850 1_4:-60961772 Msa0175130:three_prime_UTR
TATGGGAAGATGATGATGAC+AGG 0.584972 1_4:-60963386 Msa0175130:intron
TTCCTTGGAGCAAAATCTCG+TGG 0.586918 1_4:-60963839 Msa0175130:CDS
TTATTTAAAACTGAAGGCCG+AGG 0.589346 1_4:-60964564 Msa0175130:CDS
CGTTGGAACTGTAGTGGTAG+CGG 0.590834 1_4:+60968125 None:intergenic
TTGTAAAACTTAACACGCCC+GGG 0.593182 1_4:-60968196 None:intergenic
GGCTTCCTGCCTAAAACTCA+AGG 0.598288 1_4:-60961986 Msa0175130:CDS
TGCCATTGAAGAACACGAGA+AGG 0.599044 1_4:-60962055 Msa0175130:CDS
ACTGAAAGCTGAAGAACCAT+CGG 0.600098 1_4:-60962882 Msa0175130:CDS
GTGCAGGCATAAGAAGCAGA+AGG 0.601872 1_4:-60965746 Msa0175130:intron
TTAAAACTGAAGGCCGAGGG+TGG 0.605393 1_4:-60964560 Msa0175130:CDS
TTTAAAACAGTGGACTCCGA+TGG 0.605914 1_4:+60962866 None:intergenic
GTGCACTAGGTAGCATAACA+TGG 0.607288 1_4:+60961710 None:intergenic
CGTTTGCGTTGGAACTGTAG+TGG 0.607859 1_4:+60968119 None:intergenic
GAAAAGAAAAGATGACGCTA+CGG 0.608952 1_4:-60962112 Msa0175130:CDS
CTCTACCAAAAGATCTAAGG+GGG 0.609097 1_4:-60962672 Msa0175130:CDS
TGTACAGAGTGAACAATCCA+TGG 0.611538 1_4:-60962912 Msa0175130:CDS
GAAAACTGAAATAGAAAGCG+AGG 0.615849 1_4:-60962792 Msa0175130:CDS
TCCTTTATATGACTCTGCGG+AGG 0.618388 1_4:-60962957 Msa0175130:CDS
TATTTAAAACTGAAGGCCGA+GGG 0.619845 1_4:-60964563 Msa0175130:CDS
GCAAAGGTTCGCTGCCTCTG+TGG 0.623435 1_4:-60963881 Msa0175130:CDS
GCCGCTAGGGCAAAATCCAG+GGG 0.626592 1_4:+60965624 None:intergenic
GGCAAATCTTCAGCAGCATG+AGG 0.632645 1_4:+60967818 None:intergenic
ATTCAAAGTAACACTGCTGG+AGG 0.635490 1_4:-60962704 Msa0175130:CDS
CAGTTTGTCATTGAATACTG+TGG 0.640591 1_4:-60964401 Msa0175130:CDS
CAAGAAAATGGAATGTCATG+GGG 0.642373 1_4:-60963991 Msa0175130:CDS
CGGTTGAACATTTAAAACAG+TGG 0.645180 1_4:+60962856 None:intergenic
CATCAATTACGGATTAGATG+AGG 0.646637 1_4:+60961840 None:intergenic
CAGGCATAAGAAGCAGAAGG+AGG 0.647886 1_4:-60965743 Msa0175130:CDS
GATGATCCTGACAGTGCATG+TGG 0.654583 1_4:-60965685 Msa0175130:CDS
TTGATCCCAATCGAATTCAG+CGG 0.659698 1_4:+60962836 None:intergenic
AGCGAGAAAAGGGGTTTGGG+GGG 0.674889 1_4:+60968014 None:intergenic
AACATTTGAGCGCACCACAG+AGG 0.676482 1_4:+60963867 None:intergenic
GCTTGCAGAAGCGAGAAAAG+GGG 0.677415 1_4:+60968005 None:intergenic
TGTACTCCTCAAAAGGCACC+CGG 0.683773 1_4:-60961922 Msa0175130:CDS
TCTCTACCAAAAGATCTAAG+GGG 0.690458 1_4:-60962673 Msa0175130:CDS
TCTACCAAAAGATCTAAGGG+GGG 0.693195 1_4:-60962671 Msa0175130:CDS
AAGAAAATGGAATGTCATGG+GGG 0.698806 1_4:-60963990 Msa0175130:CDS
AATTCCTTTATATGACTCTG+CGG 0.704826 1_4:-60962960 Msa0175130:CDS
TTCCTGCCTAAAACTCAAGG+CGG 0.738527 1_4:-60961983 Msa0175130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAATTGTAATAAAGA+GGG + chr1_4:60961863-60961882 None:intergenic 15.0%
!!! CATTTTCTTATCATTTATTT+AGG - chr1_4:60962043-60962062 Msa0175130:CDS 15.0%
!! TTGTTAAAAATATTATCACT+CGG - chr1_4:60962127-60962146 Msa0175130:intron 15.0%
!!! TCAGTTTTATAAAGAAAAAA+AGG + chr1_4:60962404-60962423 None:intergenic 15.0%
!!! AAAAAATGCTCAAAATATTT+TGG + chr1_4:60963080-60963099 None:intergenic 15.0%
!! AGAATATATCATATATGAAT+TGG + chr1_4:60964908-60964927 None:intergenic 15.0%
!! AAAGAAAAATAACCATATTA+AGG + chr1_4:60965298-60965317 None:intergenic 15.0%
!! AATCCTAATATTAAAAGAAA+TGG - chr1_4:60965652-60965671 Msa0175130:CDS 15.0%
!!! TCTTTTTCATTGATTATTAT+TGG - chr1_4:60966310-60966329 Msa0175130:intron 15.0%
!! ATTATTAAAATGATCATCTT+TGG + chr1_4:60967349-60967368 None:intergenic 15.0%
!! ATTCTTTATACAATGAAATA+CGG - chr1_4:60967699-60967718 Msa0175130:intron 15.0%
!!! AAAATAACAGAAAAAGATTT+TGG + chr1_4:60968048-60968067 None:intergenic 15.0%
!! TATGATACAGTAAAATTTGT+TGG - chr1_4:60961607-60961626 Msa0175130:three_prime_UTR 20.0%
!!! TAAAATTTGTTGGTGAAAAA+GGG - chr1_4:60961617-60961636 Msa0175130:three_prime_UTR 20.0%
!! GAAACAAAATTGTAATAAAG+AGG + chr1_4:60961864-60961883 None:intergenic 20.0%
!!! AAAATGATTTTTTTATGCGA+AGG - chr1_4:60962004-60962023 Msa0175130:CDS 20.0%
!! ATTACTGTTATGAGTTATTT+AGG - chr1_4:60962206-60962225 Msa0175130:intron 20.0%
!!! TTATGAGTTATTTAGGTTAT+AGG - chr1_4:60962213-60962232 Msa0175130:intron 20.0%
!! AATATTGAAAAATATTGGAC+CGG + chr1_4:60962326-60962345 None:intergenic 20.0%
!! AATTCAATATGGAAAAGTTT+CGG + chr1_4:60962910-60962929 None:intergenic 20.0%
!! TTTATAATCAGAAAAAGAGA+GGG + chr1_4:60963007-60963026 None:intergenic 20.0%
!!! TTTTATAATCAGAAAAAGAG+AGG + chr1_4:60963008-60963027 None:intergenic 20.0%
!! TTTAGTAGAACTAAAACAAA+GGG + chr1_4:60963368-60963387 None:intergenic 20.0%
!! ATTTAGTAGAACTAAAACAA+AGG + chr1_4:60963369-60963388 None:intergenic 20.0%
!! AATAAGTATGCAATGAAAAT+AGG + chr1_4:60964833-60964852 None:intergenic 20.0%
!!! ACAAAGTTATTTAAAACTGA+AGG - chr1_4:60965209-60965228 Msa0175130:intron 20.0%
!! TTTGTTTGTTTATTTCATAC+AGG - chr1_4:60965350-60965369 Msa0175130:intron 20.0%
!! AATGGTTTATAAATCTTGAA+AGG + chr1_4:60965609-60965628 None:intergenic 20.0%
!!! CATATGACTATAATTTTGAA+TGG - chr1_4:60965866-60965885 Msa0175130:intron 20.0%
!! TTCAGTGTTAATAAATAATG+AGG - chr1_4:60966168-60966187 Msa0175130:intron 20.0%
!! AATAATCAATGAAAAAGAGA+AGG + chr1_4:60966308-60966327 None:intergenic 20.0%
!! ACATAGATCTGTTATAATTT+CGG - chr1_4:60967422-60967441 Msa0175130:intron 20.0%
!! TTCATTGTATAAAGAATCAA+GGG + chr1_4:60967696-60967715 None:intergenic 20.0%
!! TTTCATTGTATAAAGAATCA+AGG + chr1_4:60967697-60967716 None:intergenic 20.0%
!!! AGATTTTGTATTTGTTTATC+AGG + chr1_4:60968150-60968169 None:intergenic 20.0%
!! AATTTTACTGTATCATATCC+CGG + chr1_4:60961604-60961623 None:intergenic 25.0%
!!! GTAAAATTTGTTGGTGAAAA+AGG - chr1_4:60961616-60961635 Msa0175130:three_prime_UTR 25.0%
! TGATCGAAGAAATTTGAATA+GGG + chr1_4:60961720-60961739 None:intergenic 25.0%
! ATGATCGAAGAAATTTGAAT+AGG + chr1_4:60961721-60961740 None:intergenic 25.0%
! TGATTGATATGAATGTATTG+AGG + chr1_4:60961985-60962004 None:intergenic 25.0%
! TAACTGGTTATGTTAATTAC+TGG - chr1_4:60962159-60962178 Msa0175130:intron 25.0%
!! GAACTTTTCTGTATTCAATT+AGG - chr1_4:60962259-60962278 Msa0175130:intron 25.0%
! CAGCGAATATTGAAAAATAT+TGG + chr1_4:60962331-60962350 None:intergenic 25.0%
!!! ATATTTTTCAATATTCGCTG+AGG - chr1_4:60962331-60962350 Msa0175130:intron 25.0%
!! GAAGACAAATCAATTTTTGT+TGG - chr1_4:60962422-60962441 Msa0175130:intron 25.0%
!! ACAAATCAATTTTTGTTGGT+GGG - chr1_4:60962426-60962445 Msa0175130:intron 25.0%
! TTGAAGAATATATCCATTGA+AGG + chr1_4:60962777-60962796 None:intergenic 25.0%
! ATATTCTTCAATGTAACTTC+CGG - chr1_4:60962786-60962805 Msa0175130:CDS 25.0%
! AAAAAAATTGATATATCCGC+CGG + chr1_4:60962883-60962902 None:intergenic 25.0%
! ATTCAATATGGAAAAGTTTC+GGG + chr1_4:60962909-60962928 None:intergenic 25.0%
! AGCTAGTGAACAAATAATAA+AGG + chr1_4:60963031-60963050 None:intergenic 25.0%
! AGGATATAATACAATTCGAT+TGG + chr1_4:60963839-60963858 None:intergenic 25.0%
! TCCTATTTAAATCCAAACAA+TGG - chr1_4:60963855-60963874 Msa0175130:CDS 25.0%
! ACCATTGTTTGGATTTAAAT+AGG + chr1_4:60963859-60963878 None:intergenic 25.0%
!!! GTTGCATTTTTTTTTTTGAG+AGG - chr1_4:60964346-60964365 Msa0175130:CDS 25.0%
! AACTTGTAGAACAAAATAAC+CGG + chr1_4:60964404-60964423 None:intergenic 25.0%
!! TTTTGTTCTACAAGTTTCTT+AGG - chr1_4:60964408-60964427 Msa0175130:CDS 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + chr1_4:60964632-60964651 None:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG + chr1_4:60964636-60964655 None:intergenic 25.0%
! ATAGGATATGACAAAATTCA+AGG + chr1_4:60964815-60964834 None:intergenic 25.0%
!! ATCTGAAGTAAAGTTTAAGT+AGG + chr1_4:60964867-60964886 None:intergenic 25.0%
! ATATATTCTGATAGCAAGAA+AGG - chr1_4:60964919-60964938 Msa0175130:intron 25.0%
! GAAAACGAGAATATTTCTTT+CGG + chr1_4:60965109-60965128 None:intergenic 25.0%
! AAATCAAGGTAATCATATGA+TGG - chr1_4:60965261-60965280 Msa0175130:intron 25.0%
! AATCAAGGTAATCATATGAT+GGG - chr1_4:60965262-60965281 Msa0175130:intron 25.0%
! ACCTTGAATTTCATAAGTAT+GGG + chr1_4:60965439-60965458 None:intergenic 25.0%
!!! AAATTTTTGTTTGCTTTTGC+AGG - chr1_4:60965517-60965536 Msa0175130:intron 25.0%
!!! ATTAGGATTTTTGTTTGAAG+TGG + chr1_4:60965641-60965660 None:intergenic 25.0%
!! GGTCCATTTCTTTTAATATT+AGG + chr1_4:60965658-60965677 None:intergenic 25.0%
!! GACTATAATTTTGAATGGTT+TGG - chr1_4:60965871-60965890 Msa0175130:intron 25.0%
!!! TATAATTTTGAATGGTTTGG+AGG - chr1_4:60965874-60965893 Msa0175130:intron 25.0%
!!! TCAAGCGTTTTAACATTTAT+AGG + chr1_4:60966000-60966019 None:intergenic 25.0%
!!! GATTATGTAAGTTTTGATAG+TGG - chr1_4:60966211-60966230 Msa0175130:intron 25.0%
!!! TTATATGGTTTTGGATAAAG+AGG + chr1_4:60966668-60966687 None:intergenic 25.0%
! TTGATATTGCTGAAGTTATA+TGG + chr1_4:60966683-60966702 None:intergenic 25.0%
!! ATATCCTGGTTTATAAGTTT+TGG - chr1_4:60966762-60966781 Msa0175130:intron 25.0%
! TAAACCAAAACTTATAAACC+AGG + chr1_4:60966769-60966788 None:intergenic 25.0%
! ACTACAAAGTTAAAATACCA+AGG + chr1_4:60967325-60967344 None:intergenic 25.0%
! GTTCTTACAAATTGTAACAA+GGG + chr1_4:60967404-60967423 None:intergenic 25.0%
! TGTTCTTACAAATTGTAACA+AGG + chr1_4:60967405-60967424 None:intergenic 25.0%
!! GCCAAAATAATTGAATTTTC+AGG - chr1_4:60967499-60967518 Msa0175130:intron 25.0%
!! GCCTGAAAATTCAATTATTT+TGG + chr1_4:60967503-60967522 None:intergenic 25.0%
!! TGATTGTCATTTATATTCTC+TGG - chr1_4:60967609-60967628 Msa0175130:intron 25.0%
! ATTCTGTGAATCATCAATTA+CGG + chr1_4:60967953-60967972 None:intergenic 25.0%
!!! AGATTTTGGATTTGTTTATC+AGG + chr1_4:60968034-60968053 None:intergenic 25.0%
! ATTTTACTGTATCATATCCC+GGG + chr1_4:60961603-60961622 None:intergenic 30.0%
TACCATATGAGAACAAAAGT+TGG + chr1_4:60961830-60961849 None:intergenic 30.0%
TCACATAAAGTCGAATATGA+AGG + chr1_4:60961886-60961905 None:intergenic 30.0%
TGCTATCTTCTACTTATGAT+TGG - chr1_4:60962081-60962100 Msa0175130:CDS 30.0%
GTATTCAATTAGGCTTACTT+TGG - chr1_4:60962269-60962288 Msa0175130:intron 30.0%
!! TTGGATTAGTTTCTCTCTTA+TGG - chr1_4:60962288-60962307 Msa0175130:intron 30.0%
! ATTAGTTTCTCTCTTATGGT+AGG - chr1_4:60962292-60962311 Msa0175130:intron 30.0%
! GACAAATCAATTTTTGTTGG+TGG - chr1_4:60962425-60962444 Msa0175130:intron 30.0%
AACATCGATCGATCAATTAA+CGG - chr1_4:60962574-60962593 Msa0175130:CDS 30.0%
TATATCCATTGAAGGAAGAT+TGG + chr1_4:60962769-60962788 None:intergenic 30.0%
!!! TATTTTGACCTATGTCATAC+TGG - chr1_4:60962831-60962850 Msa0175130:CDS 30.0%
!! ATTTTGACCTATGTCATACT+GGG - chr1_4:60962832-60962851 Msa0175130:CDS 30.0%
AATGAAAATATCCACTAGCT+GGG + chr1_4:60962938-60962957 None:intergenic 30.0%
AAATGAAAATATCCACTAGC+TGG + chr1_4:60962939-60962958 None:intergenic 30.0%
! AGTGCTTGTATTTGTTAGAT+AGG - chr1_4:60963131-60963150 Msa0175130:intron 30.0%
ACATTAAAGATGAAAGAGAG+AGG + chr1_4:60963204-60963223 None:intergenic 30.0%
AGTAAAAACCATCATTCTCA+TGG - chr1_4:60963298-60963317 Msa0175130:intron 30.0%
GTAAAAACCATCATTCTCAT+GGG - chr1_4:60963299-60963318 Msa0175130:intron 30.0%
! TCTAGAGAGTTTACTCTTTT+AGG + chr1_4:60963473-60963492 None:intergenic 30.0%
! TAGTGCGATATTTGATTTCA+GGG + chr1_4:60963568-60963587 None:intergenic 30.0%
ATATTGCTATATGTGAATGC+AGG - chr1_4:60964062-60964081 Msa0175130:intron 30.0%
! AACTCACCTGATTTTTACAA+TGG + chr1_4:60964183-60964202 None:intergenic 30.0%
ACTTGTAGAACAAAATAACC+GGG + chr1_4:60964403-60964422 None:intergenic 30.0%
!! AAGTTTCTTAGGCTTTGTTT+GGG - chr1_4:60964419-60964438 Msa0175130:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG + chr1_4:60964633-60964652 None:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG + chr1_4:60964639-60964658 None:intergenic 30.0%
ATATAAAACCCTCCTCATTT+GGG + chr1_4:60964660-60964679 None:intergenic 30.0%
AATATAAAACCCTCCTCATT+TGG + chr1_4:60964661-60964680 None:intergenic 30.0%
! AACTTTTCTTCTAAGTAGTG+CGG - chr1_4:60965039-60965058 Msa0175130:intron 30.0%
GCTATAGATATCATTGCAAT+CGG - chr1_4:60965061-60965080 Msa0175130:intron 30.0%
ATCAAGGTAATCATATGATG+GGG - chr1_4:60965263-60965282 Msa0175130:intron 30.0%
! ATCATATGATGGGGAAATTA+AGG - chr1_4:60965272-60965291 Msa0175130:intron 30.0%
TTTGTTTATTTCATACAGGC+AGG - chr1_4:60965354-60965373 Msa0175130:intron 30.0%
TCCCATACTTATGAAATTCA+AGG - chr1_4:60965435-60965454 Msa0175130:intron 30.0%
GACCTTGAATTTCATAAGTA+TGG + chr1_4:60965440-60965459 None:intergenic 30.0%
CAAGATTTATAAACCATTCC+TGG - chr1_4:60965611-60965630 Msa0175130:CDS 30.0%
TACAATACTTGCATATTAGC+AGG + chr1_4:60965679-60965698 None:intergenic 30.0%
AAATAGGAGGATAACAAAAC+AGG + chr1_4:60965704-60965723 None:intergenic 30.0%
ACAAGAAAATGGAATGTCAT+GGG - chr1_4:60965787-60965806 Msa0175130:intron 30.0%
! AGTTAAGCCTTTTAAATGCA+TGG - chr1_4:60966037-60966056 Msa0175130:intron 30.0%
! GTTAAGCCTTTTAAATGCAT+GGG - chr1_4:60966038-60966057 Msa0175130:intron 30.0%
GTGTTAATAAATAATGAGGC+AGG - chr1_4:60966172-60966191 Msa0175130:intron 30.0%
! TTCCTCATGTTTGGAATAAT+CGG - chr1_4:60966352-60966371 Msa0175130:intron 30.0%
AAAAGACTAAGCACAAAAGT+GGG + chr1_4:60966583-60966602 None:intergenic 30.0%
AAAAAGACTAAGCACAAAAG+TGG + chr1_4:60966584-60966603 None:intergenic 30.0%
AAAGACTTTGAATTGCTTTC+AGG + chr1_4:60966629-60966648 None:intergenic 30.0%
! TTGCTGAAGTTATATGGTTT+TGG + chr1_4:60966677-60966696 None:intergenic 30.0%
TCATATTTCTTGTCATATCC+TGG - chr1_4:60966748-60966767 Msa0175130:intron 30.0%
AATTCCTTTATATGACTCTG+CGG - chr1_4:60966819-60966838 Msa0175130:intron 30.0%
ATCTCTACCAAAAGATCTAA+GGG - chr1_4:60967105-60967124 Msa0175130:intron 30.0%
AGATGATGATATTCAGGAAT+TGG + chr1_4:60967263-60967282 None:intergenic 30.0%
AAAGCTAGATGATGATATTC+AGG + chr1_4:60967269-60967288 None:intergenic 30.0%
! GCTTTCAATTGTGTTATTAG+TGG - chr1_4:60967284-60967303 Msa0175130:intron 30.0%
! TTGATGATTCACAGAATACA+TGG - chr1_4:60967956-60967975 Msa0175130:exon 30.0%
CTAGCTTCTGTTATGAATTT+CGG + chr1_4:60968125-60968144 None:intergenic 30.0%
CAATAAGAGGAATGGGAAAA+TGG + chr1_4:60961807-60961826 None:intergenic 35.0%
AAGTTGGCAATAAGAGGAAT+GGG + chr1_4:60961814-60961833 None:intergenic 35.0%
AAAGTTGGCAATAAGAGGAA+TGG + chr1_4:60961815-60961834 None:intergenic 35.0%
GAACAAAAGTTGGCAATAAG+AGG + chr1_4:60961820-60961839 None:intergenic 35.0%
! TGCCAACTTTTGTTCTCATA+TGG - chr1_4:60961825-60961844 Msa0175130:three_prime_UTR 35.0%
!!! GACTTTTTTATCTGCGTATG+AGG - chr1_4:60962378-60962397 Msa0175130:intron 35.0%
ATTGAGAAGAGAACCTACAA+GGG + chr1_4:60962491-60962510 None:intergenic 35.0%
AATTGAGAAGAGAACCTACA+AGG + chr1_4:60962492-60962511 None:intergenic 35.0%
AATTGATCGATCGATGTTAC+CGG + chr1_4:60962572-60962591 None:intergenic 35.0%
TTGAAGGAAGATTGGACAAT+GGG + chr1_4:60962761-60962780 None:intergenic 35.0%
ATTGAAGGAAGATTGGACAA+TGG + chr1_4:60962762-60962781 None:intergenic 35.0%
ATTGTCCAATCTTCCTTCAA+TGG - chr1_4:60962761-60962780 Msa0175130:CDS 35.0%
GCTGGGAGATTAATTCAATA+TGG + chr1_4:60962921-60962940 None:intergenic 35.0%
AAAGAGAGGGATAAGAGAAT+TGG + chr1_4:60962994-60963013 None:intergenic 35.0%
!!! AAAATATTTTGGTTGCGAGG+CGG + chr1_4:60963069-60963088 None:intergenic 35.0%
!!! CTCAAAATATTTTGGTTGCG+AGG + chr1_4:60963072-60963091 None:intergenic 35.0%
TGTACTCTTACAAAAGCAGA+GGG + chr1_4:60963181-60963200 None:intergenic 35.0%
! CTTTTAGGCGAATAGCAATA+AGG + chr1_4:60963458-60963477 None:intergenic 35.0%
TAGAAATTTCATCCGACTTC+TGG - chr1_4:60963489-60963508 Msa0175130:intron 35.0%
GACTAAAAAACTATCCCACA+AGG + chr1_4:60963515-60963534 None:intergenic 35.0%
!!! TGGGATAGTTTTTTAGTCAG+TGG - chr1_4:60963517-60963536 Msa0175130:intron 35.0%
!!! GGGATAGTTTTTTAGTCAGT+GGG - chr1_4:60963518-60963537 Msa0175130:intron 35.0%
!! TTTTTAGTCAGTGGGATAGA+AGG - chr1_4:60963526-60963545 Msa0175130:intron 35.0%
! GATATTTGATTTCAGGGCAT+CGG + chr1_4:60963562-60963581 None:intergenic 35.0%
! CTAGTGCGATATTTGATTTC+AGG + chr1_4:60963569-60963588 None:intergenic 35.0%
TTATGAGTTCGTCAACAGAA+TGG + chr1_4:60963609-60963628 None:intergenic 35.0%
TTCTGTATTATGAAGCAGGA+AGG + chr1_4:60963661-60963680 None:intergenic 35.0%
CATAATACAGAAGAGGAAGT+TGG - chr1_4:60963669-60963688 Msa0175130:intron 35.0%
TGAGGGATCTAAATTCCAAT+GGG + chr1_4:60963889-60963908 None:intergenic 35.0%
! CATTCAATTTTCCATTCCTC+TGG + chr1_4:60963945-60963964 None:intergenic 35.0%
!! CAGTGCTGGTTAATACATTT+AGG + chr1_4:60964129-60964148 None:intergenic 35.0%
TATTTGTATTCTGCTTTCCC+CGG - chr1_4:60964382-60964401 Msa0175130:CDS 35.0%
CTTGTAGAACAAAATAACCG+GGG + chr1_4:60964402-60964421 None:intergenic 35.0%
!! CAAGTTTCTTAGGCTTTGTT+TGG - chr1_4:60964418-60964437 Msa0175130:intron 35.0%
!!! TTTTTTAGTTCCCCCAAATG+AGG - chr1_4:60964645-60964664 Msa0175130:intron 35.0%
TATAAAACCCTCCTCATTTG+GGG + chr1_4:60964659-60964678 None:intergenic 35.0%
AAGAAATAGAGGACATTGGA+AGG + chr1_4:60964704-60964723 None:intergenic 35.0%
AGAGTAAGTGGAAGAAATAG+AGG + chr1_4:60964715-60964734 None:intergenic 35.0%
GGAAAAAAGGAAAGAGTAAG+TGG + chr1_4:60964727-60964746 None:intergenic 35.0%
AAAGGAAAGGCTTGGAAAAA+AGG + chr1_4:60964740-60964759 None:intergenic 35.0%
!! TAAGGCTTTGTTTGCAAGTT+TGG + chr1_4:60964772-60964791 None:intergenic 35.0%
TAGCAGTCTGTAGTTACAAT+TGG - chr1_4:60965005-60965024 Msa0175130:intron 35.0%
! TTATTTAAAACTGAAGGCCG+AGG - chr1_4:60965215-60965234 Msa0175130:intron 35.0%
! TATTTAAAACTGAAGGCCGA+GGG - chr1_4:60965216-60965235 Msa0175130:intron 35.0%
GGGAAATTAAGGCCTTAATA+TGG - chr1_4:60965283-60965302 Msa0175130:intron 35.0%
CAGTTTGTCATTGAATACTG+TGG - chr1_4:60965378-60965397 Msa0175130:intron 35.0%
! TTTGTTTGAAGTGGTTTACC+AGG + chr1_4:60965632-60965651 None:intergenic 35.0%
! CATTTTCTTGTCTCACAGTT+TGG + chr1_4:60965778-60965797 None:intergenic 35.0%
CAAACTGTGAGACAAGAAAA+TGG - chr1_4:60965776-60965795 Msa0175130:intron 35.0%
GACAAGAAAATGGAATGTCA+TGG - chr1_4:60965786-60965805 Msa0175130:intron 35.0%
CAAGAAAATGGAATGTCATG+GGG - chr1_4:60965788-60965807 Msa0175130:intron 35.0%
AAGAAAATGGAATGTCATGG+GGG - chr1_4:60965789-60965808 Msa0175130:intron 35.0%
AAGAGTTGGAATATTTGCAC+TGG - chr1_4:60965816-60965835 Msa0175130:intron 35.0%
TATTCCTATTGGAACTGAAC+TGG - chr1_4:60965843-60965862 Msa0175130:intron 35.0%
! CTCAAATGTTCTGAATTCCT+TGG - chr1_4:60965925-60965944 Msa0175130:intron 35.0%
ATCATGCCCATGCATTTAAA+AGG + chr1_4:60966047-60966066 None:intergenic 35.0%
! TAGTGGGTCTTAAAAACTCA+TGG + chr1_4:60966085-60966104 None:intergenic 35.0%
TCACCTTTCAAGCTATTAGT+GGG + chr1_4:60966101-60966120 None:intergenic 35.0%
ATCACCTTTCAAGCTATTAG+TGG + chr1_4:60966102-60966121 None:intergenic 35.0%
ACTAATAGCTTGAAAGGTGA+TGG - chr1_4:60966101-60966120 Msa0175130:intron 35.0%
GTGCTGTATTCATCTCTAAA+AGG - chr1_4:60966439-60966458 Msa0175130:intron 35.0%
! TCGTTTTATCTGTTACTGAC+TGG - chr1_4:60966468-60966487 Msa0175130:intron 35.0%
TGCTAGGATCTCATCATTAT+GGG + chr1_4:60966532-60966551 None:intergenic 35.0%
AAAGACTAAGCACAAAAGTG+GGG + chr1_4:60966582-60966601 None:intergenic 35.0%
!!! ATGGTTTTGGATAAAGAGGA+AGG + chr1_4:60966664-60966683 None:intergenic 35.0%
AGCTTTCAGTATAATAGCCA+TGG + chr1_4:60966887-60966906 None:intergenic 35.0%
! CGGTTGAACATTTAAAACAG+TGG + chr1_4:60966926-60966945 None:intergenic 35.0%
GAAAACTGAAATAGAAAGCG+AGG - chr1_4:60966987-60967006 Msa0175130:intron 35.0%
AAGATCCTGTTTGGTATCTT+GGG + chr1_4:60967028-60967047 None:intergenic 35.0%
! TTTTTGTGCAAGATCCTGTT+TGG + chr1_4:60967037-60967056 None:intergenic 35.0%
! CTTAGATCTTTTGGTAGAGA+TGG + chr1_4:60967106-60967125 None:intergenic 35.0%
CATCTCTACCAAAAGATCTA+AGG - chr1_4:60967104-60967123 Msa0175130:intron 35.0%
TCTCTACCAAAAGATCTAAG+GGG - chr1_4:60967106-60967125 Msa0175130:intron 35.0%
! GGAGGAGATTTTAGATTATG+AGG - chr1_4:60967206-60967225 Msa0175130:intron 35.0%
GGACTAAAACTTAGTTACCT+TGG - chr1_4:60967305-60967324 Msa0175130:intron 35.0%
! TGTCATTTCATAGTACGATC+TGG - chr1_4:60967374-60967393 Msa0175130:intron 35.0%
ATGAGAACTGTCATGAATCA+CGG - chr1_4:60967532-60967551 Msa0175130:intron 35.0%
! GTCATCTTTTCTTTTCTGCA+TGG + chr1_4:60967663-60967682 None:intergenic 35.0%
GAAAAGAAAAGATGACGCTA+CGG - chr1_4:60967667-60967686 Msa0175130:intron 35.0%
! AATGAAGCTTTTGACGTTCT+CGG - chr1_4:60967916-60967935 Msa0175130:intron 35.0%
!! CATCAATTACGGATTAGATG+AGG + chr1_4:60967942-60967961 None:intergenic 35.0%
CTAGGTTCTGTTATGAACTT+CGG + chr1_4:60968009-60968028 None:intergenic 35.0%
!! AAAAAGTTCTGAGTTAGTGC+TGG + chr1_4:60968094-60968113 None:intergenic 35.0%
CGAAATTCATAACAGAAGCT+AGG - chr1_4:60968123-60968142 Msa0175130:five_prime_UTR 35.0%
ATTGATCGATCGATGTTACC+GGG + chr1_4:60962571-60962590 None:intergenic 40.0%
ATCGATCGATCAATTAACGG+CGG - chr1_4:60962577-60962596 Msa0175130:CDS 40.0%
CACTCGATTGACATAAAGGA+AGG + chr1_4:60962605-60962624 None:intergenic 40.0%
CAAGCACTCGATTGACATAA+AGG + chr1_4:60962609-60962628 None:intergenic 40.0%
TCGATTGAGACAGAGAGTAA+AGG - chr1_4:60962648-60962667 Msa0175130:CDS 40.0%
! CAGAGAGTAAAGGCACAAAT+CGG - chr1_4:60962658-60962677 Msa0175130:CDS 40.0%
! AAAGGCACAAATCGGCTAAA+CGG - chr1_4:60962666-60962685 Msa0175130:CDS 40.0%
GGGATCTTTACCTAATGATG+CGG + chr1_4:60962740-60962759 None:intergenic 40.0%
TGAAGGAAGATTGGACAATG+GGG + chr1_4:60962760-60962779 None:intergenic 40.0%
ATTAGCTACGCGATTCTTAC+CGG + chr1_4:60962808-60962827 None:intergenic 40.0%
GCTGGTAGAGTTTGTATATG+TGG + chr1_4:60962861-60962880 None:intergenic 40.0%
CATATACAAACTCTACCAGC+CGG - chr1_4:60962861-60962880 Msa0175130:CDS 40.0%
TGAATTAATCTCCCAGCTAG+TGG - chr1_4:60962924-60962943 Msa0175130:CDS 40.0%
AGCACTGCGCAAGATTAATT+TGG + chr1_4:60963117-60963136 None:intergenic 40.0%
GTGTACTCTTACAAAAGCAG+AGG + chr1_4:60963182-60963201 None:intergenic 40.0%
ACTTTGTAAAGCTGTCCTGA+CGG + chr1_4:60963281-60963300 None:intergenic 40.0%
ACTAAAGATCCAGCATAAGC+GGG + chr1_4:60963338-60963357 None:intergenic 40.0%
CACTAAAGATCCAGCATAAG+CGG + chr1_4:60963339-60963358 None:intergenic 40.0%
GAATGGAATTGGAAGTGAAG+TGG + chr1_4:60963592-60963611 None:intergenic 40.0%
GTTCGTCAACAGAATGGAAT+TGG + chr1_4:60963603-60963622 None:intergenic 40.0%
! ACTAGATAACTTGTGACAGC+GGG + chr1_4:60963637-60963656 None:intergenic 40.0%
! CACTAGATAACTTGTGACAG+CGG + chr1_4:60963638-60963657 None:intergenic 40.0%
CCTCTTCTGTATTATGAAGC+AGG + chr1_4:60963665-60963684 None:intergenic 40.0%
CCTGCTTCATAATACAGAAG+AGG - chr1_4:60963662-60963681 Msa0175130:intron 40.0%
! CAAATCAAAGGGTACAAGGT+TGG + chr1_4:60963775-60963794 None:intergenic 40.0%
CAACCTTGTACCCTTTGATT+TGG - chr1_4:60963773-60963792 Msa0175130:intron 40.0%
!! CTTGTACCCTTTGATTTGGA+GGG - chr1_4:60963777-60963796 Msa0175130:intron 40.0%
TTCCTACCCTCCAAATCAAA+GGG + chr1_4:60963786-60963805 None:intergenic 40.0%
TTTCCTACCCTCCAAATCAA+AGG + chr1_4:60963787-60963806 None:intergenic 40.0%
!! TTTGATTTGGAGGGTAGGAA+AGG - chr1_4:60963786-60963805 Msa0175130:intron 40.0%
GTGAGGGATCTAAATTCCAA+TGG + chr1_4:60963890-60963909 None:intergenic 40.0%
CTTGTACGTAGCCTTTGAAT+TGG + chr1_4:60963915-60963934 None:intergenic 40.0%
CAATTCAAAGGCTACGTACA+AGG - chr1_4:60963913-60963932 Msa0175130:CDS 40.0%
ACTTCTCTTTATCTCTGTGC+AGG - chr1_4:60964017-60964036 Msa0175130:intron 40.0%
! TTTTACAATGGATGCCGCTA+GGG + chr1_4:60964171-60964190 None:intergenic 40.0%
! TTTTTACAATGGATGCCGCT+AGG + chr1_4:60964172-60964191 None:intergenic 40.0%
CGGCATCCATTGTAAAAATC+AGG - chr1_4:60964174-60964193 Msa0175130:CDS 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - chr1_4:60964426-60964445 Msa0175130:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + chr1_4:60964625-60964644 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + chr1_4:60964626-60964645 None:intergenic 40.0%
ATAAAACCCTCCTCATTTGG+GGG + chr1_4:60964658-60964677 None:intergenic 40.0%
AATAGAGGACATTGGAAGGA+GGG + chr1_4:60964700-60964719 None:intergenic 40.0%
AAATAGAGGACATTGGAAGG+AGG + chr1_4:60964701-60964720 None:intergenic 40.0%
GTGGAAGAAATAGAGGACAT+TGG + chr1_4:60964708-60964727 None:intergenic 40.0%
! CTTTGTTTGCAAGTTTGGAG+AGG + chr1_4:60964767-60964786 None:intergenic 40.0%
AGCAAACTTGACTGCTACTA+AGG + chr1_4:60964790-60964809 None:intergenic 40.0%
TTTCTGCAAGCATGAGACAT+GGG + chr1_4:60965165-60965184 None:intergenic 40.0%
ATTTCTGCAAGCATGAGACA+TGG + chr1_4:60965166-60965185 None:intergenic 40.0%
ATAAGTATGGGATCTGCGTT+TGG + chr1_4:60965427-60965446 None:intergenic 40.0%
!! GTTTGCTTTTGCAGGTCTTA+AGG - chr1_4:60965525-60965544 Msa0175130:intron 40.0%
TTGAAGTGGTTTACCAGGAA+TGG + chr1_4:60965627-60965646 None:intergenic 40.0%
GCACTGGAAGATATTCCTAT+TGG - chr1_4:60965832-60965851 Msa0175130:intron 40.0%
TATGCCAGTTCAGTTCCAAT+AGG + chr1_4:60965850-60965869 None:intergenic 40.0%
AGACCCACTAATAGCTTGAA+AGG - chr1_4:60966095-60966114 Msa0175130:intron 40.0%
CTACTCTTCTTCCTCATGTT+TGG - chr1_4:60966343-60966362 Msa0175130:intron 40.0%
CTCCGATTATTCCAAACATG+AGG + chr1_4:60966357-60966376 None:intergenic 40.0%
! ATGTTTGGAATAATCGGAGC+AGG - chr1_4:60966358-60966377 Msa0175130:intron 40.0%
AGCAGGAGGATACTTATCTA+TGG - chr1_4:60966375-60966394 Msa0175130:intron 40.0%
GCAGGAGGATACTTATCTAT+GGG - chr1_4:60966376-60966395 Msa0175130:intron 40.0%
! TATGGGAAGATGATGATGAC+AGG - chr1_4:60966393-60966412 Msa0175130:intron 40.0%
ATCTCATCATTATGGGGTCT+AGG + chr1_4:60966525-60966544 None:intergenic 40.0%
GCTAGGATCTCATCATTATG+GGG + chr1_4:60966531-60966550 None:intergenic 40.0%
GTGCTAGGATCTCATCATTA+TGG + chr1_4:60966533-60966552 None:intergenic 40.0%
TAATGATGAGATCCTAGCAC+AGG - chr1_4:60966533-60966552 Msa0175130:intron 40.0%
AAGACTAAGCACAAAAGTGG+GGG + chr1_4:60966581-60966600 None:intergenic 40.0%
GATGAACTCACGACAAATGT+TGG - chr1_4:60966844-60966863 Msa0175130:intron 40.0%
TGTACAGAGTGAACAATCCA+TGG - chr1_4:60966867-60966886 Msa0175130:intron 40.0%
ACTGAAAGCTGAAGAACCAT+CGG - chr1_4:60966897-60966916 Msa0175130:intron 40.0%
! TTTAAAACAGTGGACTCCGA+TGG + chr1_4:60966916-60966935 None:intergenic 40.0%
TTCAACCGCTGAATTCGATT+GGG - chr1_4:60966938-60966957 Msa0175130:intron 40.0%
TTGATCCCAATCGAATTCAG+CGG + chr1_4:60966946-60966965 None:intergenic 40.0%
CTGAATTCGATTGGGATCAA+TGG - chr1_4:60966946-60966965 Msa0175130:intron 40.0%
CAAGATCCTGTTTGGTATCT+TGG + chr1_4:60967029-60967048 None:intergenic 40.0%
ATTCAAAGTAACACTGCTGG+AGG - chr1_4:60967075-60967094 Msa0175130:intron 40.0%
CTCTACCAAAAGATCTAAGG+GGG - chr1_4:60967107-60967126 Msa0175130:intron 40.0%
TCTACCAAAAGATCTAAGGG+GGG - chr1_4:60967108-60967127 Msa0175130:intron 40.0%
ATTGATGCAAAGTATGCAGC+TGG - chr1_4:60967159-60967178 Msa0175130:intron 40.0%
GTGCTTCCTTTGATGCTAAA+AGG + chr1_4:60967185-60967204 None:intergenic 40.0%
! TTTAGCATCAAAGGAAGCAC+AGG - chr1_4:60967185-60967204 Msa0175130:intron 40.0%
TGACAGATGATGTGTGCATT+TGG + chr1_4:60967448-60967467 None:intergenic 40.0%
ATCCTTCTCGTGTTCTTCAA+TGG + chr1_4:60967729-60967748 None:intergenic 40.0%
TGTCGTAGATACACTGTCTT+GGG + chr1_4:60967753-60967772 None:intergenic 40.0%
! TGTTGCTTGTACTCCTCAAA+AGG - chr1_4:60967850-60967869 Msa0175130:intron 40.0%
CGAAGTTCATAACAGAACCT+AGG - chr1_4:60968007-60968026 Msa0175130:five_prime_UTR 40.0%
! GGATTTGTTTATCAGGTCCT+AGG + chr1_4:60968027-60968046 None:intergenic 40.0%
GTCTACTAGGTAGCATAACA+TGG + chr1_4:60968188-60968207 None:intergenic 40.0%
AACTCTTCTTGCGTTTGCGT+TGG + chr1_4:60961674-60961693 None:intergenic 45.0%
AGAAGCGAGAAAAGGGGTTT+GGG + chr1_4:60961771-60961790 None:intergenic 45.0%
AGCTTGCAGAAGCGAGAAAA+GGG + chr1_4:60961778-60961797 None:intergenic 45.0%
AAGCTTGCAGAAGCGAGAAA+AGG + chr1_4:60961779-60961798 None:intergenic 45.0%
TCTCTCTTATGGTAGGTTCC+AGG - chr1_4:60962299-60962318 Msa0175130:intron 45.0%
GAAAAATATTGGACCGGACC+TGG + chr1_4:60962320-60962339 None:intergenic 45.0%
ACCACTGAATCCCTTGCTTT+CGG + chr1_4:60962452-60962471 None:intergenic 45.0%
! GATTCAGTGGTCTTACCCTT+GGG - chr1_4:60962461-60962480 Msa0175130:intron 45.0%
GCTTGACTTCTCTATCTGAC+CGG - chr1_4:60962624-60962643 Msa0175130:CDS 45.0%
CTTGACTTCTCTATCTGACC+GGG - chr1_4:60962625-60962644 Msa0175130:CDS 45.0%
! GCTAGTTCTTCTCCCAATCT+CGG + chr1_4:60962698-60962717 None:intergenic 45.0%
CTAATGATGCGGAGCGAATT+CGG + chr1_4:60962729-60962748 None:intergenic 45.0%
AAATTGATATATCCGCCGGC+TGG + chr1_4:60962879-60962898 None:intergenic 45.0%
TGCATAGCCCATGAGAATGA+TGG + chr1_4:60963309-60963328 None:intergenic 45.0%
TAAAGATCCAGCATAAGCGG+GGG + chr1_4:60963336-60963355 None:intergenic 45.0%
CTAAAGATCCAGCATAAGCG+GGG + chr1_4:60963337-60963356 None:intergenic 45.0%
TTAGTCAGTGGGATAGAAGG+TGG - chr1_4:60963529-60963548 Msa0175130:intron 45.0%
! CCTCCAAATCAAAGGGTACA+AGG + chr1_4:60963779-60963798 None:intergenic 45.0%
!! CCTTGTACCCTTTGATTTGG+AGG - chr1_4:60963776-60963795 Msa0175130:intron 45.0%
!! TACCCTTTGATTTGGAGGGT+AGG - chr1_4:60963781-60963800 Msa0175130:intron 45.0%
AGGTGGAGTGTGGAGTATAA+TGG - chr1_4:60963806-60963825 Msa0175130:intron 45.0%
!! TGGGCTGGTATACCATTGTT+TGG + chr1_4:60963870-60963889 None:intergenic 45.0%
ACAATGGTATACCAGCCCAT+TGG - chr1_4:60963871-60963890 Msa0175130:CDS 45.0%
GGATCTAAATTCCAATGGGC+TGG + chr1_4:60963885-60963904 None:intergenic 45.0%
ATCCCTCACCACCAATTCAA+AGG - chr1_4:60963901-60963920 Msa0175130:CDS 45.0%
!! AGCCTTTGAATTGGTGGTGA+GGG + chr1_4:60963906-60963925 None:intergenic 45.0%
!! TAGCCTTTGAATTGGTGGTG+AGG + chr1_4:60963907-60963926 None:intergenic 45.0%
GTACGTAGCCTTTGAATTGG+TGG + chr1_4:60963912-60963931 None:intergenic 45.0%
! AATTTTCCATTCCTCTGGCC+TGG + chr1_4:60963940-60963959 None:intergenic 45.0%
AAATCAGGTGAGTTCGTGCT+TGG - chr1_4:60964189-60964208 Msa0175130:CDS 45.0%
AATCAGGTGAGTTCGTGCTT+GGG - chr1_4:60964190-60964209 Msa0175130:CDS 45.0%
TCGTACTATAACCATCCTGC+AGG - chr1_4:60964241-60964260 Msa0175130:CDS 45.0%
! CTTTTCAACTACCTGCAGGA+TGG + chr1_4:60964255-60964274 None:intergenic 45.0%
! CCAACTTTTCAACTACCTGC+AGG + chr1_4:60964259-60964278 None:intergenic 45.0%
CCTGCAGGTAGTTGAAAAGT+TGG - chr1_4:60964256-60964275 Msa0175130:intron 45.0%
GCTTTAACCTGTGTCTCTGA+AGG - chr1_4:60964308-60964327 Msa0175130:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr1_4:60964430-60964449 Msa0175130:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr1_4:60964431-60964450 Msa0175130:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + chr1_4:60964624-60964643 None:intergenic 45.0%
! TTTAGTTCCCCCAAATGAGG+AGG - chr1_4:60964648-60964667 Msa0175130:intron 45.0%
TTAGTTCCCCCAAATGAGGA+GGG - chr1_4:60964649-60964668 Msa0175130:intron 45.0%
ATAGAGGACATTGGAAGGAG+GGG + chr1_4:60964699-60964718 None:intergenic 45.0%
TTGGAGAGGAAGGAAAGGAA+AGG + chr1_4:60964753-60964772 None:intergenic 45.0%
CAAGTTTGGAGAGGAAGGAA+AGG + chr1_4:60964758-60964777 None:intergenic 45.0%
GTTTGCAAGTTTGGAGAGGA+AGG + chr1_4:60964763-60964782 None:intergenic 45.0%
TCTGGCTGATGAGGAAATCA+AGG - chr1_4:60965247-60965266 Msa0175130:intron 45.0%
AACCTTGAGCAGTGGGAAAT+AGG + chr1_4:60965720-60965739 None:intergenic 45.0%
GATGTCAAACCTTGAGCAGT+GGG + chr1_4:60965727-60965746 None:intergenic 45.0%
TGATGTCAAACCTTGAGCAG+TGG + chr1_4:60965728-60965747 None:intergenic 45.0%
GTCATGGGGGAAATAAGAGT+TGG - chr1_4:60965802-60965821 Msa0175130:intron 45.0%
! TGAATGGTTTGGAGGTGCAA+AGG - chr1_4:60965882-60965901 Msa0175130:intron 45.0%
TTCCTTGGAGCAAAATCTCG+TGG - chr1_4:60965940-60965959 Msa0175130:intron 45.0%
! AACCACGAGATTTTGCTCCA+AGG + chr1_4:60965945-60965964 None:intergenic 45.0%
! TAGCTTGAAAGGTGATGGCT+AGG - chr1_4:60966106-60966125 Msa0175130:intron 45.0%
! TTTGGAATAATCGGAGCAGG+AGG - chr1_4:60966361-60966380 Msa0175130:intron 45.0%
TCATTATGGGGTCTAGGAGT+GGG + chr1_4:60966519-60966538 None:intergenic 45.0%
ATCATTATGGGGTCTAGGAG+TGG + chr1_4:60966520-60966539 None:intergenic 45.0%
TCCTTTATATGACTCTGCGG+AGG - chr1_4:60966822-60966841 Msa0175130:intron 45.0%
TCCTCCGCAGAGTCATATAA+AGG + chr1_4:60966826-60966845 None:intergenic 45.0%
GTTCAACCGCTGAATTCGAT+TGG - chr1_4:60966937-60966956 Msa0175130:intron 45.0%
TCGATTGGGATCAATGGCTT+AGG - chr1_4:60966952-60966971 Msa0175130:intron 45.0%
GTACTCCCAAGATACCAAAC+AGG - chr1_4:60967020-60967039 Msa0175130:intron 45.0%
CGCATTCAAAGTAACACTGC+TGG - chr1_4:60967072-60967091 Msa0175130:intron 45.0%
! CTTTCCCCCCTTAGATCTTT+TGG + chr1_4:60967115-60967134 None:intergenic 45.0%
!!! AGCTGGCCTTTTAGCATCAA+AGG - chr1_4:60967176-60967195 Msa0175130:intron 45.0%
TTCTCGTGTTCTTCAATGGC+AGG + chr1_4:60967725-60967744 None:intergenic 45.0%
TGCCATTGAAGAACACGAGA+AGG - chr1_4:60967724-60967743 Msa0175130:intron 45.0%
CTGTCGTAGATACACTGTCT+TGG + chr1_4:60967754-60967773 None:intergenic 45.0%
AGTAGCAGAGAAGTGGATAC+AGG - chr1_4:60967772-60967791 Msa0175130:intron 45.0%
TTCCTGCCTAAAACTCAAGG+CGG - chr1_4:60967796-60967815 Msa0175130:CDS 45.0%
! CAAACTCCGCCTTGAGTTTT+AGG + chr1_4:60967805-60967824 None:intergenic 45.0%
! TTCAGTACCTTTTGCTTGGC+CGG + chr1_4:60967879-60967898 None:intergenic 45.0%
! CGACTTCAGTACCTTTTGCT+TGG + chr1_4:60967883-60967902 None:intergenic 45.0%
GTGCACTAGGTAGCATAACA+TGG + chr1_4:60968072-60968091 None:intergenic 45.0%
!!! TATTATTATTATTATTTTGA+AGG - chr1_4:60961936-60961955 Msa0175130:CDS 5.0%
! GTTGGTGAAAAAGGGAAGCG+AGG - chr1_4:60961625-60961644 Msa0175130:three_prime_UTR 50.0%
CGTTGGAACTGTAGTGGTAG+CGG + chr1_4:60961657-60961676 None:intergenic 50.0%
CGTTTGCGTTGGAACTGTAG+TGG + chr1_4:60961663-60961682 None:intergenic 50.0%
AAGCGAGAAAAGGGGTTTGG+GGG + chr1_4:60961769-60961788 None:intergenic 50.0%
GAAGCGAGAAAAGGGGTTTG+GGG + chr1_4:60961770-60961789 None:intergenic 50.0%
CAGAAGCGAGAAAAGGGGTT+TGG + chr1_4:60961772-60961791 None:intergenic 50.0%
GCTTGCAGAAGCGAGAAAAG+GGG + chr1_4:60961777-60961796 None:intergenic 50.0%
GGCAAATCTTCAGCAGCATG+AGG + chr1_4:60961964-60961983 None:intergenic 50.0%
CACTCGGCAGCATTACTAAC+TGG - chr1_4:60962143-60962162 Msa0175130:intron 50.0%
CTTATGGTAGGTTCCAGGTC+CGG - chr1_4:60962304-60962323 Msa0175130:intron 50.0%
! GGATTCAGTGGTCTTACCCT+TGG - chr1_4:60962460-60962479 Msa0175130:intron 50.0%
AGAAGAGAACCTACAAGGGC+CGG + chr1_4:60962487-60962506 None:intergenic 50.0%
ACTCTCTGTCTCAATCGACC+CGG + chr1_4:60962646-60962665 None:intergenic 50.0%
TAAACGGCTGAGTCCGAGAT+TGG - chr1_4:60962682-60962701 Msa0175130:CDS 50.0%
AAACGGCTGAGTCCGAGATT+GGG - chr1_4:60962683-60962702 Msa0175130:CDS 50.0%
CGAATTCGCTCCGCATCATT+AGG - chr1_4:60962727-60962746 Msa0175130:CDS 50.0%
ATACAAACTCTACCAGCCGG+CGG - chr1_4:60962864-60962883 Msa0175130:CDS 50.0%
!!! ATTTTGGTTGCGAGGCGGAA+GGG + chr1_4:60963064-60963083 None:intergenic 50.0%
!!! TATTTTGGTTGCGAGGCGGA+AGG + chr1_4:60963065-60963084 None:intergenic 50.0%
ATACTCTTGCGAAGACCGTC+AGG - chr1_4:60963263-60963282 Msa0175130:intron 50.0%
TATCCCACAAGGCCAGAAGT+CGG + chr1_4:60963504-60963523 None:intergenic 50.0%
GATTTGGAGGGTAGGAAAGG+TGG - chr1_4:60963789-60963808 Msa0175130:intron 50.0%
AAAGGCTACGTACAAGGACC+AGG - chr1_4:60963919-60963938 Msa0175130:CDS 50.0%
GTGCAGGCATAAGAAGCAGA+AGG - chr1_4:60964033-60964052 Msa0175130:intron 50.0%
CAGGCATAAGAAGCAGAAGG+AGG - chr1_4:60964036-60964055 Msa0175130:intron 50.0%
GCATAAGAAGCAGAAGGAGG+AGG - chr1_4:60964039-60964058 Msa0175130:intron 50.0%
GATGATCCTGACAGTGCATG+TGG - chr1_4:60964094-60964113 Msa0175130:intron 50.0%
CTGACAGTGCATGTGGAGAT+GGG - chr1_4:60964101-60964120 Msa0175130:intron 50.0%
ACAAGTGCCTTCAGAGACAC+AGG + chr1_4:60964318-60964337 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr1_4:60964429-60964448 Msa0175130:intron 50.0%
GGGAGGGGGAGAGAAATATA+GGG - chr1_4:60964451-60964470 Msa0175130:intron 50.0%
GGAGGGGGAGAGAAATATAG+GGG - chr1_4:60964452-60964471 Msa0175130:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG + chr1_4:60964622-60964641 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + chr1_4:60964623-60964642 None:intergenic 50.0%
GAGGAAGGAAAGGAAAGGCT+TGG + chr1_4:60964748-60964767 None:intergenic 50.0%
TTAAAACTGAAGGCCGAGGG+TGG - chr1_4:60965219-60965238 Msa0175130:intron 50.0%
TAAAACTGAAGGCCGAGGGT+GGG - chr1_4:60965220-60965239 Msa0175130:intron 50.0%
CTTGAGCAGTGGGAAATAGG+AGG + chr1_4:60965717-60965736 None:intergenic 50.0%
CTCCTATTTCCCACTGCTCA+AGG - chr1_4:60965715-60965734 Msa0175130:CDS 50.0%
AACATTTGAGCGCACCACAG+AGG + chr1_4:60965915-60965934 None:intergenic 50.0%
CATTATGGGGTCTAGGAGTG+GGG + chr1_4:60966518-60966537 None:intergenic 50.0%
CAAGCACAAGTTCCTGTGCT+AGG + chr1_4:60966548-60966567 None:intergenic 50.0%
! AGCATCAAAGGAAGCACAGG+AGG - chr1_4:60967188-60967207 Msa0175130:intron 50.0%
CTACGACAGTAGCAGAGAAG+TGG - chr1_4:60967765-60967784 Msa0175130:intron 50.0%
GGCTTCCTGCCTAAAACTCA+AGG - chr1_4:60967793-60967812 Msa0175130:CDS 50.0%
!! TGTACTCCTCAAAAGGCACC+CGG - chr1_4:60967857-60967876 Msa0175130:intron 50.0%
! TCAGTACCTTTTGCTTGGCC+GGG + chr1_4:60967878-60967897 None:intergenic 50.0%
!! TGAGTTAGTGCTGGTGCACT+AGG + chr1_4:60968085-60968104 None:intergenic 50.0%
AGCGAGAAAAGGGGTTTGGG+GGG + chr1_4:60961768-60961787 None:intergenic 55.0%
! TTGTTGGTGGGCCGAAAGCA+AGG - chr1_4:60962438-60962457 Msa0175130:intron 55.0%
! TGTTGGTGGGCCGAAAGCAA+GGG - chr1_4:60962439-60962458 Msa0175130:intron 55.0%
GCCGAAAGCAAGGGATTCAG+TGG - chr1_4:60962448-60962467 Msa0175130:intron 55.0%
! CTGTCTCTGTTGCTGCTTCC+CGG - chr1_4:60962550-60962569 Msa0175130:intron 55.0%
GTGGTCGCCCAGTATGACAT+AGG + chr1_4:60962842-60962861 None:intergenic 55.0%
! GCATTTTCCCCCGCTTATGC+TGG - chr1_4:60963326-60963345 Msa0175130:intron 55.0%
!! TCATCCGACTTCTGGCCTTG+TGG - chr1_4:60963497-60963516 Msa0175130:intron 55.0%
!! CATCCGACTTCTGGCCTTGT+GGG - chr1_4:60963498-60963517 Msa0175130:intron 55.0%
AGGGTAGGAAAGGTGGAGTG+TGG - chr1_4:60963796-60963815 Msa0175130:intron 55.0%
CCATCTCCACATGCACTGTC+AGG + chr1_4:60964103-60964122 None:intergenic 55.0%
CCTGACAGTGCATGTGGAGA+TGG - chr1_4:60964100-60964119 Msa0175130:intron 55.0%
! ACCCCTGGATTTTGCCCTAG+CGG - chr1_4:60964154-60964173 Msa0175130:intron 55.0%
TGCCGCTAGGGCAAAATCCA+GGG + chr1_4:60964159-60964178 None:intergenic 55.0%
ATGCCGCTAGGGCAAAATCC+AGG + chr1_4:60964160-60964179 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr1_4:60964434-60964453 Msa0175130:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr1_4:60964435-60964454 Msa0175130:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr1_4:60964436-60964455 Msa0175130:intron 55.0%
GGGGAGGGGGAGAGAAATAT+AGG - chr1_4:60964450-60964469 Msa0175130:intron 55.0%
!!! AGGAGGGTTTTGGGGGGTTT+GGG + chr1_4:60964616-60964635 None:intergenic 55.0%
AAAACTGAAGGCCGAGGGTG+GGG - chr1_4:60965221-60965240 Msa0175130:intron 55.0%
!!! CTCCGCCTTGAGTTTTAGGC+AGG + chr1_4:60967801-60967820 None:intergenic 55.0%
! CAGTGGTCTTACCCTTGGGC+CGG - chr1_4:60962465-60962484 Msa0175130:intron 60.0%
ACGTACAAGGACCAGGCCAG+AGG - chr1_4:60963926-60963945 Msa0175130:CDS 60.0%
CAAGGACCAGGCCAGAGGAA+TGG - chr1_4:60963931-60963950 Msa0175130:CDS 60.0%
! ACCAGCACTGAATGCACCCC+TGG - chr1_4:60964139-60964158 Msa0175130:intron 60.0%
! TCCAGGGGTGCATTCAGTGC+TGG + chr1_4:60964143-60964162 None:intergenic 60.0%
GCCGCTAGGGCAAAATCCAG+GGG + chr1_4:60964158-60964177 None:intergenic 60.0%
TTGGGAGTTTGGAGGGGAGG+GGG - chr1_4:60964437-60964456 Msa0175130:intron 60.0%
!!! GGGTTTTGGGGGGTTTGGGA+GGG + chr1_4:60964612-60964631 None:intergenic 60.0%
!!! AGGGTTTTGGGGGGTTTGGG+AGG + chr1_4:60964613-60964632 None:intergenic 60.0%
!!! GAGGAGGGTTTTGGGGGGTT+TGG + chr1_4:60964617-60964636 None:intergenic 60.0%
! GTGGGGTCTTCTGGCTGATG+AGG - chr1_4:60965238-60965257 Msa0175130:intron 60.0%
GCAAAGGTTCGCTGCCTCTG+TGG - chr1_4:60965898-60965917 Msa0175130:intron 60.0%
ATGGGGTCTAGGAGTGGGGA+AGG + chr1_4:60966514-60966533 None:intergenic 60.0%
! AAGGCACCCGGCCAAGCAAA+AGG - chr1_4:60967869-60967888 Msa0175130:intron 60.0%
ACCTACAAGGGCCGGCCCAA+GGG + chr1_4:60962479-60962498 None:intergenic 65.0%
AACCTACAAGGGCCGGCCCA+AGG + chr1_4:60962480-60962499 None:intergenic 65.0%
CAGCCAGAAGACCCCACCCT+CGG + chr1_4:60965235-60965254 None:intergenic 65.0%
! GCTTGGCCGGGTGCCTTTTG+AGG + chr1_4:60967866-60967885 None:intergenic 65.0%
ACCCTTGGGCCGGCCCTTGT+AGG - chr1_4:60962475-60962494 Msa0175130:intron 70.0%
AGGCCGAGGGTGGGGTCTTC+TGG - chr1_4:60965229-60965248 Msa0175130:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60961587 60968214 60961587 ID=Msa0175130;Name=Msa0175130
chr1_4 mRNA 60961587 60968214 60961587 ID=Msa0175130-mRNA-1;Parent=Msa0175130;Name=Msa0175130-mRNA-1;_AED=0.15;_eAED=0.15;_QI=257|1|1|1|1|1|10|259|479
chr1_4 exon 60961587 60962133 60961587 ID=Msa0175130-mRNA-1:exon:19435;Parent=Msa0175130-mRNA-1
chr1_4 exon 60962574 60962997 60962574 ID=Msa0175130-mRNA-1:exon:19434;Parent=Msa0175130-mRNA-1
chr1_4 exon 60963387 60963421 60963387 ID=Msa0175130-mRNA-1:exon:19433;Parent=Msa0175130-mRNA-1
chr1_4 exon 60963832 60964030 60963832 ID=Msa0175130-mRNA-1:exon:19432;Parent=Msa0175130-mRNA-1
chr1_4 exon 60964169 60964262 60964169 ID=Msa0175130-mRNA-1:exon:19431;Parent=Msa0175130-mRNA-1
chr1_4 exon 60964345 60964429 60964345 ID=Msa0175130-mRNA-1:exon:19430;Parent=Msa0175130-mRNA-1
chr1_4 exon 60964533 60964619 60964533 ID=Msa0175130-mRNA-1:exon:19429;Parent=Msa0175130-mRNA-1
chr1_4 exon 60965606 60965762 60965606 ID=Msa0175130-mRNA-1:exon:19428;Parent=Msa0175130-mRNA-1
chr1_4 exon 60967776 60967843 60967776 ID=Msa0175130-mRNA-1:exon:19427;Parent=Msa0175130-mRNA-1
chr1_4 exon 60967955 60968214 60967955 ID=Msa0175130-mRNA-1:exon:19426;Parent=Msa0175130-mRNA-1
chr1_4 five_prime_UTR 60967958 60968214 60967958 ID=Msa0175130-mRNA-1:five_prime_utr;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60967955 60967957 60967955 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60967776 60967843 60967776 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60965606 60965762 60965606 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60964533 60964619 60964533 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60964345 60964429 60964345 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60964169 60964262 60964169 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60963832 60964030 60963832 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60963387 60963421 60963387 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60962574 60962997 60962574 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 CDS 60961846 60962133 60961846 ID=Msa0175130-mRNA-1:cds;Parent=Msa0175130-mRNA-1
chr1_4 three_prime_UTR 60961587 60961845 60961587 ID=Msa0175130-mRNA-1:three_prime_utr;Parent=Msa0175130-mRNA-1
Gene Sequence

>Msa0175130

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAGGTATGATGAAGATGATCCTGACAGTGCATGTGGAGATGGGTGCCTAAATGTATTAACCAGCACTGAATGCACCCCTGGATTTTGCCCTAGCGGCATCCATTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTCTGGCTGATGAGGAAATCAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAACGCAGATCCCATACTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAAGGAAGCCTTTCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGACAAATGTTGGTGTACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATGTTCAACCGCTGAATTCGATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAAGTTGTACTCCCAAGATACCAAACAGGATCTTGCACAAAAAAATGCAATGATATCGCGCATTCAAAGTAACACTGCTGGAGGAAAGTCCATCTCTACCAAAAGATCTAAGGGGGGAAAGCTTAAAAATCACACACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAAGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCGGCCTCATCTAATCCGTAA
Protein sequence

>Msa0175130

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPSGIHCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYEIQGLKDAFIISLNASESIDATRKGSLSRFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTTNVGVQSEQSMAIILKAEEPSESTVLNVQPLNSIGINGLGIQKMKTEIESEDMKLYSQDTKQDLAQKNAMISRIQSNTAGGKSISTKRSKGGKLKNHTQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQKAPGQAKGTEVDNEDKMKLLTFSASSNP*