AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458860 MtrunA17_Chr1g0201311 96.242 479 18 0 1 479 1 479 0.0 955
Msa1458860 MtrunA17_Chr1g0201621 95.825 479 20 0 1 479 1 479 0.0 953
Msa1458860 MtrunA17_Chr3g0125251 41.453 234 134 3 12 244 1253 1484 1.27e-55 200
Msa1458860 MtrunA17_Chr6g0477001 43.519 216 118 4 11 226 42 253 3.40e-49 171
Msa1458860 MtrunA17_Chr1g0201321 93.976 83 5 0 271 353 1 83 6.67e-48 159
Msa1458860 MtrunA17_Chr2g0305371 34.274 248 146 5 1 248 266 496 1.88e-40 152
Msa1458860 MtrunA17_Chr2g0297191 40.323 124 73 1 96 219 1044 1166 4.94e-23 103
Msa1458860 MtrunA17_Chr5g0403241 35.503 169 94 3 66 219 1334 1502 3.02e-22 100
Msa1458860 MtrunA17_Chr4g0075321 34.756 164 88 3 73 219 898 1059 5.59e-22 99.8
Msa1458860 MtrunA17_Chr5g0401921 36.095 169 92 3 42 203 672 831 5.60e-22 99.8
Msa1458860 MtrunA17_Chr7g0235081 39.844 128 70 1 85 205 195 322 2.27e-20 92.4
Msa1458860 MtrunA17_Chr7g0275611 38.158 152 88 4 76 223 814 963 2.70e-20 94.4
Msa1458860 MtrunA17_Chr3g0126701 36.242 149 91 3 78 223 915 1062 5.43e-20 93.6
Msa1458860 MtrunA17_Chr1g0147121 35.762 151 93 3 76 223 884 1033 9.32e-20 92.8
Msa1458860 MtrunA17_Chr8g0347071 36.424 151 92 3 76 223 799 948 1.13e-19 92.4
Msa1458860 MtrunA17_Chr8g0354821 30.435 207 94 6 61 224 489 688 1.20e-19 92.0
Msa1458860 MtrunA17_Chr1g0194631 37.405 131 80 1 72 202 598 726 1.38e-19 92.0
Msa1458860 MtrunA17_Chr7g0221611 32.016 253 134 9 19 245 818 1058 1.79e-19 92.0
Msa1458860 MtrunA17_Chr5g0399801 33.838 198 93 9 61 223 894 1088 6.93e-19 90.1
Msa1458860 MtrunA17_Chr1g0149581 34.000 150 94 2 79 223 1516 1665 7.51e-19 90.1
Msa1458860 MtrunA17_Chr1g0149611 35.849 159 86 4 80 223 350 507 7.63e-19 89.4
Msa1458860 MtrunA17_Chr8g0373821 35.000 160 90 4 73 219 375 533 8.42e-19 89.4
Msa1458860 MtrunA17_Chr1g0170651 37.107 159 77 7 75 220 394 542 1.91e-18 88.2
Msa1458860 MtrunA17_Chr4g0003511 32.000 200 88 9 61 220 857 1048 3.92e-18 87.8
Msa1458860 MtrunA17_Chr7g0255181 31.892 185 102 6 61 223 522 704 6.36e-18 87.0
Msa1458860 MtrunA17_Chr4g0003501 31.959 194 94 9 61 220 762 951 5.14e-17 84.3
Msa1458860 MtrunA17_Chr3g0080761 31.472 197 96 7 61 219 464 659 2.96e-15 78.6
Msa1458860 MtrunA17_Chr7g0270001 33.588 131 85 1 73 203 137 265 2.73e-14 73.6
Msa1458860 MtrunA17_Chr7g0232981 29.082 196 102 7 37 203 301 488 3.68e-14 74.7
Msa1458860 MtrunA17_Chr6g0460921 31.788 151 87 4 67 201 247 397 5.10e-14 73.9
Msa1458860 MtrunA17_Chr6g0476111 30.882 204 97 9 61 223 493 693 2.67e-12 69.3
Msa1458860 MtrunA17_Chr7g0252211 29.703 202 102 7 61 223 556 756 4.23e-12 68.6
Msa1458860 MtrunA17_Chr1g0183321 28.492 179 96 6 67 219 569 741 6.90e-12 67.8
Msa1458860 MtrunA17_Chr6g0476121 30.392 204 98 9 61 223 442 642 3.06e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458860 AT1G76710.2 63.333 480 161 5 6 471 11 489 0.0 607
Msa1458860 AT1G76710.1 63.333 480 161 5 6 471 11 489 0.0 607
Msa1458860 AT1G76710.4 62.168 489 161 6 6 471 11 498 0.0 598
Msa1458860 AT1G76710.3 59.961 507 161 6 6 471 11 516 0.0 592
Msa1458860 AT1G77300.2 41.631 233 128 4 15 244 958 1185 3.27e-56 202
Msa1458860 AT1G77300.1 41.631 233 128 4 15 244 958 1185 3.50e-56 202
Msa1458860 AT4G30860.1 37.220 223 127 5 7 228 259 469 2.33e-39 149
Msa1458860 AT3G59960.3 46.053 152 81 1 75 226 102 252 3.16e-35 133
Msa1458860 AT3G59960.2 46.053 152 81 1 75 226 102 252 3.16e-35 133
Msa1458860 AT3G59960.4 46.053 152 81 1 75 226 102 252 3.16e-35 133
Msa1458860 AT3G59960.1 46.053 152 81 1 75 226 102 252 1.44e-34 132
Msa1458860 AT2G44150.1 45.395 152 82 1 75 226 107 257 3.18e-34 132
Msa1458860 AT5G42400.7 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.2 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.8 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.5 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.4 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.1 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.3 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT5G42400.6 42.742 124 70 1 96 219 1261 1383 4.37e-25 109
Msa1458860 AT1G02580.1 33.702 181 97 4 42 211 506 674 1.60e-20 95.5
Msa1458860 AT1G05830.2 36.257 171 96 5 68 234 900 1061 1.93e-20 95.5
Msa1458860 AT1G05830.4 36.257 171 96 5 68 234 900 1061 1.93e-20 95.5
Msa1458860 AT1G05830.1 36.257 171 96 5 68 234 900 1061 1.93e-20 95.5
Msa1458860 AT1G05830.3 36.257 171 96 5 68 234 900 1061 1.93e-20 95.5
Msa1458860 AT2G23380.1 36.364 154 89 2 50 203 725 869 3.47e-20 94.7
Msa1458860 AT4G27910.1 36.424 151 92 3 76 223 877 1026 5.45e-20 94.0
Msa1458860 AT2G23380.2 36.364 154 89 2 50 203 498 642 6.80e-20 93.2
Msa1458860 AT2G35160.2 35.754 179 89 8 61 223 625 793 1.89e-19 92.0
Msa1458860 AT2G35160.3 35.754 179 89 8 61 223 625 793 1.89e-19 92.0
Msa1458860 AT2G35160.1 35.754 179 89 8 61 223 625 793 1.89e-19 92.0
Msa1458860 AT2G35160.4 35.754 179 89 8 61 223 625 793 1.89e-19 92.0
Msa1458860 AT2G35160.5 35.754 179 89 8 61 223 589 757 2.00e-19 92.0
Msa1458860 AT3G03750.2 35.556 180 96 6 59 219 167 345 4.44e-19 89.0
Msa1458860 AT3G61740.2 37.255 153 89 4 76 223 831 981 5.31e-19 90.9
Msa1458860 AT3G61740.1 37.255 153 89 4 76 223 867 1017 5.69e-19 90.9
Msa1458860 AT4G02020.1 36.641 131 81 1 72 202 695 823 7.16e-19 90.5
Msa1458860 AT2G31650.1 35.625 160 92 4 77 234 890 1040 1.02e-18 90.1
Msa1458860 AT2G23740.1 36.601 153 76 4 66 200 1199 1348 1.43e-18 89.7
Msa1458860 AT2G23740.3 36.601 153 76 4 66 200 1206 1355 1.51e-18 89.7
Msa1458860 AT2G23740.6 36.601 153 76 4 66 200 1206 1355 1.51e-18 89.7
Msa1458860 AT2G23740.2 36.601 153 76 4 66 200 1206 1355 1.51e-18 89.7
Msa1458860 AT5G53430.1 35.570 149 92 3 78 223 895 1042 7.09e-18 87.4
Msa1458860 AT1G17770.1 32.105 190 93 8 65 219 500 688 2.15e-16 82.4
Msa1458860 AT2G22740.2 32.020 203 97 9 58 223 591 789 8.68e-16 80.9
Msa1458860 AT2G22740.1 32.020 203 97 9 58 223 591 789 8.68e-16 80.9
Msa1458860 AT5G04940.2 29.648 199 103 7 61 224 474 670 3.54e-15 78.6
Msa1458860 AT5G04940.1 29.648 199 103 7 61 224 474 670 3.54e-15 78.6
Msa1458860 AT2G24740.1 30.928 194 90 8 70 224 567 755 3.52e-13 72.4
Msa1458860 AT2G23740.4 38.393 112 52 3 66 163 1206 1314 4.83e-13 72.4
Msa1458860 AT2G23740.5 38.393 112 52 3 66 163 1206 1314 4.83e-13 72.4
Msa1458860 AT3G04380.2 27.717 184 95 7 67 221 258 432 4.99e-12 68.2
Msa1458860 AT3G04380.1 27.717 184 95 7 67 221 285 459 5.32e-12 68.2
Msa1458860 AT3G04380.6 27.717 184 95 7 67 221 258 432 5.36e-12 68.2
Msa1458860 AT3G04380.4 27.717 184 95 7 67 221 285 459 5.57e-12 68.2
Msa1458860 AT3G04380.3 27.717 184 95 7 67 221 269 443 6.12e-12 68.2
Msa1458860 AT3G04380.5 27.717 184 95 7 67 221 242 416 6.99e-12 67.8
Msa1458860 AT4G02020.4 32.381 105 69 1 72 176 695 797 3.80e-11 66.2

Find 133 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAATTTGTTGGTGAAAA+AGG 0.121521 tig0039870:-17148 Msa1458860:five_prime_UTR
GACCTTGAATTTCATAAGTA+TGG 0.188096 tig0039870:+13321 Msa1458860:intergenic
AGGCCGAGGGTGGGGTCTTC+TGG 0.188537 tig0039870:-13529 Msa1458860:CDS
CTAGCTTCTGTTATGAATTT+CGG 0.234343 tig0039870:+10636 Msa1458860:intergenic
GTGCTTCCTTTGATGCTAAA+AGG 0.263819 tig0039870:+11576 Msa1458860:intergenic
CATCTCTACCAAAAGATCTA+AGG 0.291533 tig0039870:-11654 Msa1458860:CDS
CAAGATCCTGTTTGGTATCT+TGG 0.298263 tig0039870:+11732 Msa1458860:intergenic
CAAGATTTATAAACCATTCC+TGG 0.303845 tig0039870:-13147 Msa1458860:intron
CAGTGCTGGTTAATACATTT+AGG 0.324830 tig0039870:+14632 Msa1458860:intergenic
CAATAAGAGGAATGGGAAAA+TGG 0.327420 tig0039870:+16960 Msa1458860:intergenic
ACAAGCGAGAAAAGGGGTTT+GGG 0.332370 tig0039870:+16996 Msa1458860:intergenic
GCACTGGAAGATATTCCTAT+TGG 0.334570 tig0039870:-12926 Msa1458860:CDS
CAAACTGTGAGACAAGAAAA+TGG 0.346413 tig0039870:-12982 Msa1458860:CDS
AGCAGGAGGATACTTATCTA+TGG 0.346424 tig0039870:-12383 Msa1458860:intron
CACAAGCGAGAAAAGGGGTT+TGG 0.349659 tig0039870:+16995 Msa1458860:intergenic
ATGATCGAAGAAATTTGAAT+AGG 0.356481 tig0039870:+17046 Msa1458860:intergenic
TCTCAGGTTATTCATTCATA+TGG 0.356757 tig0039870:-16926 Msa1458860:intron
ATAAGTATGGGATCTGCGTT+TGG 0.395386 tig0039870:+13334 Msa1458860:intergenic
AAGATCCTGTTTGGTATCTT+GGG 0.400986 tig0039870:+11733 Msa1458860:intergenic
ATCCTTCTCGTGTTCTTCAA+TGG 0.405165 tig0039870:+11032 Msa1458860:intergenic
GGATTTGTTTATCAGGTCCT+AGG 0.410964 tig0039870:+10734 Msa1458860:intergenic
TGATCGAAGAAATTTGAATA+GGG 0.412142 tig0039870:+17047 Msa1458860:intergenic
ATTCTTTATACAATGAAATA+CGG 0.412721 tig0039870:-11059 Msa1458860:CDS
TCCTCCGCAGAGTCATATAA+AGG 0.419793 tig0039870:+11935 Msa1458860:intergenic
AGCTTGCACAAGCGAGAAAA+GGG 0.426125 tig0039870:+16989 Msa1458860:intergenic
TATGATACAGTAAAATTTGT+TGG 0.426298 tig0039870:-17157 Msa1458860:five_prime_UTR
ATTCTGTGAATCATCAATTA+CGG 0.429873 tig0039870:+10808 Msa1458860:intergenic
CTCAAATGTTCTGAATTCCT+TGG 0.432418 tig0039870:-12833 Msa1458860:CDS
TTTCATTGTATAAAGAATCA+AGG 0.435719 tig0039870:+11064 Msa1458860:intergenic
TTCTCGTGTTCTTCAATGGC+AGG 0.436989 tig0039870:+11036 Msa1458860:intergenic
CTGAATTCGATTGGGATCAA+TGG 0.457029 tig0039870:-11812 Msa1458860:CDS
AAGCTTGCACAAGCGAGAAA+AGG 0.461837 tig0039870:+16988 Msa1458860:intergenic
TGAGTTAGTGCTGGTGCACT+AGG 0.462064 tig0039870:+10676 Msa1458860:intergenic
TATTCCTATTGGAACTGAAC+TGG 0.465129 tig0039870:-12915 Msa1458860:CDS
TCCCATACTTATGAAATTCA+AGG 0.467960 tig0039870:-13323 Msa1458860:intron
TTGAAGTGGTTTACCAGGAA+TGG 0.469527 tig0039870:+13134 Msa1458860:intergenic
ACCTTGAATTTCATAAGTAT+GGG 0.471125 tig0039870:+13322 Msa1458860:intergenic
CGCATTCAAAGTAACACTGC+TGG 0.473536 tig0039870:-11686 Msa1458860:CDS
ATGCCGCTAGGGCAAAATCC+AGG 0.473906 tig0039870:+14601 Msa1458860:intergenic
CCTGACAGTGCATGTGGAGA+TGG 0.474108 tig0039870:-14658 Msa1458860:CDS
AGTAGCAGAGAAGTGGATAC+AGG 0.474675 tig0039870:-10986 Msa1458860:CDS
GTTCAACCGCTGAATTCGAT+TGG 0.477723 tig0039870:-11821 Msa1458860:CDS
TCCATCGATGCAACTAGAAA+AGG 0.481552 tig0039870:-13178 Msa1458860:CDS
TATGCCAGTTCAGTTCCAAT+AGG 0.481653 tig0039870:+12911 Msa1458860:intergenic
AACTCTTCTTGCGTTTGCGT+TGG 0.483560 tig0039870:+17093 Msa1458860:intergenic
AAAACTGAAGGCCGAGGGTG+GGG 0.484563 tig0039870:-13537 Msa1458860:CDS
GAACAAAAGTTGGCAATAAG+AGG 0.484609 tig0039870:+16947 Msa1458860:intergenic
TCGATTGGGATCAATGGCTT+AGG 0.486502 tig0039870:-11806 Msa1458860:CDS
AGCTTTCAGTATAATAGCCA+TGG 0.489595 tig0039870:+11874 Msa1458860:intergenic
ACTGCAAGTGCTGGTCTACT+AGG 0.492481 tig0039870:+10560 Msa1458860:intergenic
CGAAATTCATAACAGAAGCT+AGG 0.492911 tig0039870:-10635 Msa1458860:three_prime_UTR
AAGGCACCCGGCCAAGCAAA+AGG 0.495569 tig0039870:-10889 Msa1458860:CDS
TGTTGCTTGTACTCCTCAAA+AGG 0.496894 tig0039870:-10908 Msa1458860:CDS
AAAGTTGGCAATAAGAGGAA+TGG 0.497255 tig0039870:+16952 Msa1458860:intergenic
TTCAACCGCTGAATTCGATT+GGG 0.499606 tig0039870:-11820 Msa1458860:CDS
CCATCTCCACATGCACTGTC+AGG 0.499632 tig0039870:+14658 Msa1458860:intergenic
CAAGCGAGAAAAGGGGTTTG+GGG 0.501281 tig0039870:+16997 Msa1458860:intergenic
AAGTTGGCAATAAGAGGAAT+GGG 0.502123 tig0039870:+16953 Msa1458860:intergenic
ATCTCTACCAAAAGATCTAA+GGG 0.502128 tig0039870:-11653 Msa1458860:CDS
TGTCGTAGATACACTGTCTT+GGG 0.502526 tig0039870:+11008 Msa1458860:intergenic
ACCAGCACTGAATGCACCCC+TGG 0.503846 tig0039870:-14619 Msa1458860:CDS
GTGGGGTCTTCTGGCTGATG+AGG 0.510417 tig0039870:-13520 Msa1458860:CDS
TCTGGCTGATGAGGAAATCA+AGG 0.511018 tig0039870:-13511 Msa1458860:intron
TGCCGCTAGGGCAAAATCCA+GGG 0.511652 tig0039870:+14602 Msa1458860:intergenic
CTAGGTTCTGTTATGAACTT+CGG 0.514327 tig0039870:+10752 Msa1458860:intergenic
AAGAGTTGGAATATTTGCAC+TGG 0.522066 tig0039870:-12942 Msa1458860:CDS
TTCATTGTATAAAGAATCAA+GGG 0.526900 tig0039870:+11065 Msa1458860:intergenic
TCCAGGGGTGCATTCAGTGC+TGG 0.531693 tig0039870:+14618 Msa1458860:intergenic
AGTTGACAAACTGCAAGTGC+TGG 0.532077 tig0039870:+10551 Msa1458860:intergenic
AATAACCTGAGAACAAAAGT+TGG 0.533960 tig0039870:+16937 Msa1458860:intergenic
AATGGTTTATAAATCTTGCA+AGG 0.536559 tig0039870:+13152 Msa1458860:intergenic
CAGCCAGAAGACCCCACCCT+CGG 0.537785 tig0039870:+13526 Msa1458860:intergenic
ACAAAGTTATTTAAAACTGA+AGG 0.541788 tig0039870:-13549 Msa1458860:CDS
CTGTCGTAGATACACTGTCT+TGG 0.543309 tig0039870:+11007 Msa1458860:intergenic
ACAAGAAAATGGAATGTCAT+GGG 0.544715 tig0039870:-12971 Msa1458860:CDS
ATTGATGCAAAGTATGCAGC+TGG 0.547593 tig0039870:-11599 Msa1458860:CDS
TTTAGCATCAAAGGAAGCAC+AGG 0.547737 tig0039870:-11573 Msa1458860:CDS
GTTGTAAAACTTAACACGCC+CGG 0.550683 tig0039870:-17182 None:intergenic
TGATTGATATGAATGTATTG+AGG 0.557044 tig0039870:+16775 Msa1458860:intergenic
TGAATGGTTTGGAGGTGCAA+AGG 0.560782 tig0039870:-12876 Msa1458860:CDS
CTGACAGTGCATGTGGAGAT+GGG 0.561478 tig0039870:-14657 Msa1458860:CDS
GCAGGAGGATACTTATCTAT+GGG 0.561610 tig0039870:-12382 Msa1458860:intron
TAAAACTGAAGGCCGAGGGT+GGG 0.562493 tig0039870:-13538 Msa1458860:CDS
GTACTCCCAAGATACCAAAC+AGG 0.564017 tig0039870:-11738 Msa1458860:CDS
CTACGACAGTAGCAGAGAAG+TGG 0.567208 tig0039870:-10993 Msa1458860:CDS
AGCATCAAAGGAAGCACAGG+AGG 0.568189 tig0039870:-11570 Msa1458860:CDS
GACAAGAAAATGGAATGTCA+TGG 0.568296 tig0039870:-12972 Msa1458860:CDS
ATAGTGCTATATGTGAATGC+AGG 0.570534 tig0039870:-14696 Msa1458860:CDS
GCATAAGAAGCAGAAGGAGG+AGG 0.570658 tig0039870:-14719 Msa1458860:CDS
TTGATGATTCACAGAATACA+TGG 0.573245 tig0039870:-10802 Msa1458860:three_prime_UTR
GATGAACTCACGACAAATGT+TGG 0.579014 tig0039870:-11914 Msa1458860:CDS
GTCTACTAGGTAGCATAACA+TGG 0.583316 tig0039870:+10573 Msa1458860:intergenic
CGAAGTTCATAACAGAACCT+AGG 0.583850 tig0039870:-10751 Msa1458860:three_prime_UTR
TATGGGAAGATGATGATGAC+AGG 0.584972 tig0039870:-12365 Msa1458860:intron
TTCCTTGGAGCAAAATCTCG+TGG 0.586918 tig0039870:-12818 Msa1458860:CDS
TTATTTAAAACTGAAGGCCG+AGG 0.589346 tig0039870:-13543 Msa1458860:CDS
CGTTGGAACTGTAGTGGTAG+CGG 0.590834 tig0039870:+17110 None:intergenic
TTGTAAAACTTAACACGCCC+GGG 0.593182 tig0039870:-17181 None:intergenic
GGCTTCCTGCCTAAAACTCA+AGG 0.598288 tig0039870:-10965 Msa1458860:CDS
TGCCATTGAAGAACACGAGA+AGG 0.599044 tig0039870:-11034 Msa1458860:CDS
ACTGAAAGCTGAAGAACCAT+CGG 0.600098 tig0039870:-11861 Msa1458860:CDS
GTGCAGGCATAAGAAGCAGA+AGG 0.601872 tig0039870:-14725 Msa1458860:intron
TTAAAACTGAAGGCCGAGGG+TGG 0.605393 tig0039870:-13539 Msa1458860:CDS
TTTAAAACAGTGGACTCCGA+TGG 0.605914 tig0039870:+11845 Msa1458860:intergenic
GTGCACTAGGTAGCATAACA+TGG 0.607288 tig0039870:+10689 Msa1458860:intergenic
CGTTTGCGTTGGAACTGTAG+TGG 0.607859 tig0039870:+17104 Msa1458860:intergenic
AAGCGAGAAAAGGGGTTTGG+GGG 0.608787 tig0039870:+16998 Msa1458860:intergenic
GAAAAGAAAAGATGACGCTA+CGG 0.608952 tig0039870:-11091 Msa1458860:CDS
CTCTACCAAAAGATCTAAGG+GGG 0.609097 tig0039870:-11651 Msa1458860:CDS
TGTACAGAGTGAACAATCCA+TGG 0.611538 tig0039870:-11891 Msa1458860:CDS
GAAAACTGAAATAGAAAGCG+AGG 0.615849 tig0039870:-11771 Msa1458860:CDS
TCCTTTATATGACTCTGCGG+AGG 0.618388 tig0039870:-11936 Msa1458860:CDS
TATTTAAAACTGAAGGCCGA+GGG 0.619845 tig0039870:-13542 Msa1458860:CDS
GCAAAGGTTCGCTGCCTCTG+TGG 0.623435 tig0039870:-12860 Msa1458860:CDS
GCCGCTAGGGCAAAATCCAG+GGG 0.626592 tig0039870:+14603 Msa1458860:intergenic
GGCAAATCTTCAGCAGCATG+AGG 0.632645 tig0039870:+16796 Msa1458860:intergenic
ATTCAAAGTAACACTGCTGG+AGG 0.635490 tig0039870:-11683 Msa1458860:CDS
CAGTTTGTCATTGAATACTG+TGG 0.640591 tig0039870:-13380 Msa1458860:CDS
CAAGAAAATGGAATGTCATG+GGG 0.642373 tig0039870:-12970 Msa1458860:CDS
CGGTTGAACATTTAAAACAG+TGG 0.645180 tig0039870:+11835 Msa1458860:intergenic
CATCAATTACGGATTAGATG+AGG 0.646637 tig0039870:+10819 Msa1458860:intergenic
CAGGCATAAGAAGCAGAAGG+AGG 0.647886 tig0039870:-14722 Msa1458860:CDS
GATGATCCTGACAGTGCATG+TGG 0.654583 tig0039870:-14664 Msa1458860:CDS
GCTTGCACAAGCGAGAAAAG+GGG 0.657963 tig0039870:+16990 Msa1458860:intergenic
TTGATCCCAATCGAATTCAG+CGG 0.659698 tig0039870:+11815 Msa1458860:intergenic
AGCGAGAAAAGGGGTTTGGG+GGG 0.674889 tig0039870:+16999 Msa1458860:intergenic
AACATTTGAGCGCACCACAG+AGG 0.676482 tig0039870:+12846 Msa1458860:intergenic
TGTACTCCTCAAAAGGCACC+CGG 0.683773 tig0039870:-10901 Msa1458860:CDS
TCTCTACCAAAAGATCTAAG+GGG 0.690458 tig0039870:-11652 Msa1458860:CDS
TCTACCAAAAGATCTAAGGG+GGG 0.693195 tig0039870:-11650 Msa1458860:CDS
AAGAAAATGGAATGTCATGG+GGG 0.698806 tig0039870:-12969 Msa1458860:CDS
AATTCCTTTATATGACTCTG+CGG 0.704826 tig0039870:-11939 Msa1458860:CDS
TTCCTGCCTAAAACTCAAGG+CGG 0.738527 tig0039870:-10962 Msa1458860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAATTGTAATAAAGA+GGG + tig0039870:10855-10874 Msa1458860:intergenic 15.0%
!!! CATTTTCTTATCATTTATTT+AGG - tig0039870:11029-11048 Msa1458860:CDS 15.0%
!! TTGTTAAAAATATTATCACT+CGG - tig0039870:11113-11132 Msa1458860:intron 15.0%
!!! TCAGTTTTATAAAGAAAAAA+AGG + tig0039870:11390-11409 Msa1458860:intergenic 15.0%
!!! AAAAAATGCTCAAAATATTT+TGG + tig0039870:12066-12085 Msa1458860:intergenic 15.0%
!! AGAATATATCATATATGAAT+TGG + tig0039870:13893-13912 Msa1458860:intergenic 15.0%
!! AAAGAAAAATAACCATATTA+AGG + tig0039870:14283-14302 Msa1458860:intergenic 15.0%
!! AATCCTAATATTAAAAGAAA+TGG - tig0039870:14637-14656 Msa1458860:CDS 15.0%
!!! TCTTTTTCATTGATTATTAT+TGG - tig0039870:15295-15314 Msa1458860:intron 15.0%
!! ATTATTAAAATGATCATCTT+TGG + tig0039870:16334-16353 Msa1458860:intergenic 15.0%
!! ATTCTTTATACAATGAAATA+CGG - tig0039870:16684-16703 Msa1458860:intron 15.0%
!!! AAAATAACAGAAAAAGATTT+TGG + tig0039870:17033-17052 Msa1458860:intergenic 15.0%
!! TATGATACAGTAAAATTTGT+TGG - tig0039870:10586-10605 Msa1458860:three_prime_UTR 20.0%
!!! TAAAATTTGTTGGTGAAAAA+GGG - tig0039870:10596-10615 Msa1458860:three_prime_UTR 20.0%
!! GAAACAAAATTGTAATAAAG+AGG + tig0039870:10856-10875 Msa1458860:intergenic 20.0%
!!! AAAATGATTTTTTTATGCGA+AGG - tig0039870:10990-11009 Msa1458860:CDS 20.0%
!! ATTACTGTTATGAGTTATTT+AGG - tig0039870:11192-11211 Msa1458860:intron 20.0%
!!! TTATGAGTTATTTAGGTTAT+AGG - tig0039870:11199-11218 Msa1458860:intron 20.0%
!! AATATTGAAAATTATTGGAC+CGG + tig0039870:11312-11331 Msa1458860:intergenic 20.0%
!! AATTCAATATGGAAAAGTTT+CGG + tig0039870:11896-11915 Msa1458860:intergenic 20.0%
!! TTTATAATCAGAAAAAGAGA+GGG + tig0039870:11993-12012 Msa1458860:intergenic 20.0%
!!! TTTTATAATCAGAAAAAGAG+AGG + tig0039870:11994-12013 Msa1458860:intergenic 20.0%
!! TTTAGTAGAACTAAAACAAA+GGG + tig0039870:12353-12372 Msa1458860:intergenic 20.0%
!! ATTTAGTAGAACTAAAACAA+AGG + tig0039870:12354-12373 Msa1458860:intergenic 20.0%
!! AATAACTATGCAATGAAAAT+AGG + tig0039870:13818-13837 Msa1458860:intergenic 20.0%
!!! ACAAAGTTATTTAAAACTGA+AGG - tig0039870:14194-14213 Msa1458860:intron 20.0%
!! TTTGTTTGTTTATTTCATAC+AGG - tig0039870:14335-14354 Msa1458860:intron 20.0%
!!! CATATGACTATAATTTTGAA+TGG - tig0039870:14851-14870 Msa1458860:intron 20.0%
!! TTCAGTGTTAATAAATAATG+AGG - tig0039870:15153-15172 Msa1458860:intron 20.0%
!! AATAATCAATGAAAAAGAGA+AGG + tig0039870:15293-15312 Msa1458860:intergenic 20.0%
!! ACATAGATCTGTTATAATTT+CGG - tig0039870:16407-16426 Msa1458860:intron 20.0%
!! TTCATTGTATAAAGAATCAA+GGG + tig0039870:16681-16700 Msa1458860:intergenic 20.0%
!! TTTCATTGTATAAAGAATCA+AGG + tig0039870:16682-16701 Msa1458860:intergenic 20.0%
!!! AGATTTTGTATTTGTTTATC+AGG + tig0039870:17135-17154 Msa1458860:intergenic 20.0%
!! AATTTTACTGTATCATATCC+CGG + tig0039870:10583-10602 Msa0139180:intergenic 25.0%
!!! GTAAAATTTGTTGGTGAAAA+AGG - tig0039870:10595-10614 Msa1458860:three_prime_UTR 25.0%
! TGATCGAAGAAATTTGAATA+GGG + tig0039870:10699-10718 Msa1458860:intergenic 25.0%
! ATGATCGAAGAAATTTGAAT+AGG + tig0039870:10700-10719 Msa1458860:intergenic 25.0%
! TGATTGATATGAATGTATTG+AGG + tig0039870:10971-10990 Msa1458860:intergenic 25.0%
! TAACTGGTTATGTTAATTAC+TGG - tig0039870:11145-11164 Msa1458860:intron 25.0%
!! GAACTTTTCTGTATTCAATT+AGG - tig0039870:11245-11264 Msa1458860:intron 25.0%
! CAGCGAATATTGAAAATTAT+TGG + tig0039870:11317-11336 Msa1458860:intergenic 25.0%
!! ATAATTTTCAATATTCGCTG+AGG - tig0039870:11317-11336 Msa1458860:intron 25.0%
!! GAAGACAAATCAATTTTTGT+TGG - tig0039870:11408-11427 Msa1458860:intron 25.0%
!! ACAAATCAATTTTTGTTGGT+GGG - tig0039870:11412-11431 Msa1458860:intron 25.0%
! TTGAAGAATATATCCATTGA+AGG + tig0039870:11763-11782 Msa1458860:intergenic 25.0%
! ATATTCTTCAATGTAACTTC+CGG - tig0039870:11772-11791 Msa1458860:CDS 25.0%
! AAAAAAATTGATATATCCGC+CGG + tig0039870:11869-11888 Msa1458860:intergenic 25.0%
! ATTCAATATGGAAAAGTTTC+GGG + tig0039870:11895-11914 Msa1458860:intergenic 25.0%
! AGCTAGTGAACAAATAATAA+AGG + tig0039870:12017-12036 Msa1458860:intergenic 25.0%
! AGGATATAATACAATTCGAT+TGG + tig0039870:12824-12843 Msa1458860:intergenic 25.0%
! TCCTATTTAAATCCAAACAA+TGG - tig0039870:12840-12859 Msa1458860:CDS 25.0%
! ACCATTGTTTGGATTTAAAT+AGG + tig0039870:12844-12863 Msa1458860:intergenic 25.0%
!!! GTTGCATTTTTTTTTTTGAG+AGG - tig0039870:13331-13350 Msa1458860:CDS 25.0%
! AACTTGTAGAACAAAATAAC+CGG + tig0039870:13389-13408 Msa1458860:intergenic 25.0%
!! TTTTGTTCTACAAGTTTCTT+AGG - tig0039870:13393-13412 Msa1458860:intron 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + tig0039870:13617-13636 Msa1458860:intergenic 25.0%
! GAACTAAAAAATTGTATTGG+AGG + tig0039870:13621-13640 Msa1458860:intergenic 25.0%
! ATAGGATATGACAAAATTCA+AGG + tig0039870:13800-13819 Msa1458860:intergenic 25.0%
!! ATCTGAAGTAAAGTTTAAGT+AGG + tig0039870:13852-13871 Msa1458860:intergenic 25.0%
! ATATATTCTGATAGCAAGAA+AGG - tig0039870:13904-13923 Msa1458860:intron 25.0%
! GAAAACGAGAATATTTCTTT+CGG + tig0039870:14094-14113 Msa1458860:intergenic 25.0%
! AAATCAAGGTAATCATATGA+TGG - tig0039870:14246-14265 Msa1458860:intron 25.0%
! AATCAAGGTAATCATATGAT+GGG - tig0039870:14247-14266 Msa1458860:intron 25.0%
! ACCTTGAATTTCATAAGTAT+GGG + tig0039870:14424-14443 Msa1458860:intergenic 25.0%
!!! AAATTTTTGTTTGCTTTTGC+AGG - tig0039870:14502-14521 Msa1458860:intron 25.0%
! AATGGTTTATAAATCTTGCA+AGG + tig0039870:14594-14613 Msa1458860:intergenic 25.0%
!!! ATTAGGATTTTTGTTTGAAG+TGG + tig0039870:14626-14645 Msa1458860:intergenic 25.0%
!! GGTCCATTTCTTTTAATATT+AGG + tig0039870:14643-14662 Msa1458860:intergenic 25.0%
!! GACTATAATTTTGAATGGTT+TGG - tig0039870:14856-14875 Msa1458860:intron 25.0%
!!! TATAATTTTGAATGGTTTGG+AGG - tig0039870:14859-14878 Msa1458860:intron 25.0%
!!! TCAAGCGTTTTAACATTTAT+AGG + tig0039870:14985-15004 Msa1458860:intergenic 25.0%
!!! GATTATGTAAGTTTTGATAG+TGG - tig0039870:15196-15215 Msa1458860:intron 25.0%
!!! TTATATGGTTTTGGATAAAG+AGG + tig0039870:15653-15672 Msa1458860:intergenic 25.0%
! TTGATATTGCTGAAGTTATA+TGG + tig0039870:15668-15687 Msa1458860:intergenic 25.0%
!! ATATCCTGGTTTATAAGTTT+TGG - tig0039870:15747-15766 Msa1458860:intron 25.0%
! TAAACCAAAACTTATAAACC+AGG + tig0039870:15754-15773 Msa1458860:intergenic 25.0%
! GCTTTCAATTATGTTATTAG+TGG - tig0039870:16269-16288 Msa1458860:intron 25.0%
! ACTACAAAGTTAAAATACCA+AGG + tig0039870:16310-16329 Msa1458860:intergenic 25.0%
! GTTCTTACAAATTGTAACAA+GGG + tig0039870:16389-16408 Msa1458860:intergenic 25.0%
! TGTTCTTACAAATTGTAACA+AGG + tig0039870:16390-16409 Msa1458860:intergenic 25.0%
!! GCCAAAATAATTGAATTTTC+AGG - tig0039870:16484-16503 Msa1458860:intron 25.0%
!! GCCTGAAAATTCAATTATTT+TGG + tig0039870:16488-16507 Msa1458860:intergenic 25.0%
!! TGATTGTCATTTATATTCTC+TGG - tig0039870:16594-16613 Msa1458860:intron 25.0%
! ATTCTGTGAATCATCAATTA+CGG + tig0039870:16938-16957 Msa1458860:intergenic 25.0%
!!! AGATTTTGGATTTGTTTATC+AGG + tig0039870:17019-17038 Msa1458860:intergenic 25.0%
! ATTTTACTGTATCATATCCC+GGG + tig0039870:10582-10601 Msa0139180:intergenic 30.0%
AATAACCTGAGAACAAAAGT+TGG + tig0039870:10809-10828 Msa1458860:intergenic 30.0%
TCTCAGGTTATTCATTCATA+TGG - tig0039870:10817-10836 Msa1458860:exon 30.0%
TCACATAAAGTCGAATATGA+AGG + tig0039870:10878-10897 Msa1458860:intergenic 30.0%
TGCTATCTTCTACTTATGAT+TGG - tig0039870:11067-11086 Msa1458860:CDS 30.0%
GTATTCAATTAGGCTTACTT+TGG - tig0039870:11255-11274 Msa1458860:intron 30.0%
!! TTGGATTAGTTTCTCTCTTA+TGG - tig0039870:11274-11293 Msa1458860:intron 30.0%
! ATTAGTTTCTCTCTTATGGT+AGG - tig0039870:11278-11297 Msa1458860:intron 30.0%
! GACAAATCAATTTTTGTTGG+TGG - tig0039870:11411-11430 Msa1458860:intron 30.0%
AACATCGATCGATCAATTAA+CGG - tig0039870:11560-11579 Msa1458860:CDS 30.0%
TATATCCATTGAAGGAAGAT+TGG + tig0039870:11755-11774 Msa1458860:intergenic 30.0%
!!! TATTTTGACCTATGTCATAC+TGG - tig0039870:11817-11836 Msa1458860:CDS 30.0%
!! ATTTTGACCTATGTCATACT+GGG - tig0039870:11818-11837 Msa1458860:CDS 30.0%
AATGAAAATATCCACTAGCT+GGG + tig0039870:11924-11943 Msa1458860:intergenic 30.0%
AAATGAAAATATCCACTAGC+TGG + tig0039870:11925-11944 Msa1458860:intergenic 30.0%
! AGTGCTTGTATTTGTTAGAT+AGG - tig0039870:12117-12136 Msa1458860:intron 30.0%
ACATTAAAGATGAAAGAGAG+AGG + tig0039870:12190-12209 Msa1458860:intergenic 30.0%
AGTAAAAACCATCATTCTCA+TGG - tig0039870:12284-12303 Msa1458860:intron 30.0%
GTAAAAACCATCATTCTCAT+GGG - tig0039870:12285-12304 Msa1458860:intron 30.0%
! TCTAGAGAGTTTACTCTTTT+AGG + tig0039870:12458-12477 Msa1458860:intergenic 30.0%
! TAGTGCGATATTTGATTTCA+GGG + tig0039870:12553-12572 Msa1458860:intergenic 30.0%
! AACTCACCTGATTTTTACAA+TGG + tig0039870:13168-13187 Msa1458860:intergenic 30.0%
ACTTGTAGAACAAAATAACC+GGG + tig0039870:13388-13407 Msa1458860:intergenic 30.0%
!! AAGTTTCTTAGGCTTTGTTT+GGG - tig0039870:13404-13423 Msa1458860:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG + tig0039870:13618-13637 Msa1458860:intergenic 30.0%
GGGGAACTAAAAAATTGTAT+TGG + tig0039870:13624-13643 Msa1458860:intergenic 30.0%
ATATAAAACCCTCCTCATTT+GGG + tig0039870:13645-13664 Msa1458860:intergenic 30.0%
AATATAAAACCCTCCTCATT+TGG + tig0039870:13646-13665 Msa1458860:intergenic 30.0%
! AACTTTTCTTCTAAGTAGTG+CGG - tig0039870:14024-14043 Msa1458860:intron 30.0%
GCTATAGATATCATTGCAAT+CGG - tig0039870:14046-14065 Msa1458860:intron 30.0%
ATCAAGGTAATCATATGATG+GGG - tig0039870:14248-14267 Msa1458860:intron 30.0%
! ATCATATGATGGGGAAATTA+AGG - tig0039870:14257-14276 Msa1458860:intron 30.0%
TTTGTTTATTTCATACAGGC+AGG - tig0039870:14339-14358 Msa1458860:intron 30.0%
TCCCATACTTATGAAATTCA+AGG - tig0039870:14420-14439 Msa1458860:intron 30.0%
GACCTTGAATTTCATAAGTA+TGG + tig0039870:14425-14444 Msa1458860:intergenic 30.0%
CAAGATTTATAAACCATTCC+TGG - tig0039870:14596-14615 Msa1458860:CDS 30.0%
TACAATACTTGCATATTAGC+AGG + tig0039870:14664-14683 Msa1458860:intergenic 30.0%
AAATAGGAGGATAACAAAAC+AGG + tig0039870:14689-14708 Msa1458860:intergenic 30.0%
ACAAGAAAATGGAATGTCAT+GGG - tig0039870:14772-14791 Msa1458860:intron 30.0%
! AGTTAAGCCTTTTAAATGCA+TGG - tig0039870:15022-15041 Msa1458860:intron 30.0%
! GTTAAGCCTTTTAAATGCAT+GGG - tig0039870:15023-15042 Msa1458860:intron 30.0%
GTGTTAATAAATAATGAGGC+AGG - tig0039870:15157-15176 Msa1458860:intron 30.0%
! TTCCTCATGTTTGGAATAAT+CGG - tig0039870:15337-15356 Msa1458860:intron 30.0%
AAAAGACTAAGCACAAAAGT+GGG + tig0039870:15568-15587 Msa1458860:intergenic 30.0%
AAAAAGACTAAGCACAAAAG+TGG + tig0039870:15569-15588 Msa1458860:intergenic 30.0%
AAAGACTTTGAATTGCTTTC+AGG + tig0039870:15614-15633 Msa1458860:intergenic 30.0%
! TTGCTGAAGTTATATGGTTT+TGG + tig0039870:15662-15681 Msa1458860:intergenic 30.0%
TCATATTTCTTGTCATATCC+TGG - tig0039870:15733-15752 Msa1458860:intron 30.0%
AATTCCTTTATATGACTCTG+CGG - tig0039870:15804-15823 Msa1458860:intron 30.0%
ATCTCTACCAAAAGATCTAA+GGG - tig0039870:16090-16109 Msa1458860:intron 30.0%
AGATGATGATATTCAGGAAT+TGG + tig0039870:16248-16267 Msa1458860:intergenic 30.0%
AAAGCTAGATGATGATATTC+AGG + tig0039870:16254-16273 Msa1458860:intergenic 30.0%
! TTGATGATTCACAGAATACA+TGG - tig0039870:16941-16960 Msa1458860:five_prime_UTR 30.0%
CTAGCTTCTGTTATGAATTT+CGG + tig0039870:17110-17129 Msa1458860:intergenic 30.0%
CAATAAGAGGAATGGGAAAA+TGG + tig0039870:10786-10805 Msa1458860:intergenic 35.0%
AAGTTGGCAATAAGAGGAAT+GGG + tig0039870:10793-10812 Msa1458860:intergenic 35.0%
AAAGTTGGCAATAAGAGGAA+TGG + tig0039870:10794-10813 Msa1458860:intergenic 35.0%
GAACAAAAGTTGGCAATAAG+AGG + tig0039870:10799-10818 Msa1458860:intergenic 35.0%
! TATTGCCAACTTTTGTTCTC+AGG - tig0039870:10801-10820 Msa1458860:three_prime_UTR 35.0%
!!! GACTTTTTTATCTGCGTATG+AGG - tig0039870:11364-11383 Msa1458860:intron 35.0%
ATTGAGAAGAGAACCTACAA+GGG + tig0039870:11477-11496 Msa1458860:intergenic 35.0%
AATTGAGAAGAGAACCTACA+AGG + tig0039870:11478-11497 Msa1458860:intergenic 35.0%
AATTGATCGATCGATGTTAC+CGG + tig0039870:11558-11577 Msa1458860:intergenic 35.0%
TTGAAGGAAGATTGGACAAT+GGG + tig0039870:11747-11766 Msa1458860:intergenic 35.0%
ATTGAAGGAAGATTGGACAA+TGG + tig0039870:11748-11767 Msa1458860:intergenic 35.0%
ATTGTCCAATCTTCCTTCAA+TGG - tig0039870:11747-11766 Msa1458860:CDS 35.0%
GCTGGGAGATTAATTCAATA+TGG + tig0039870:11907-11926 Msa1458860:intergenic 35.0%
AAAGAGAGGGATAAGAGAAT+TGG + tig0039870:11980-11999 Msa1458860:intergenic 35.0%
!!! AAAATATTTTGGTTGCGAGG+CGG + tig0039870:12055-12074 Msa1458860:intergenic 35.0%
!!! CTCAAAATATTTTGGTTGCG+AGG + tig0039870:12058-12077 Msa1458860:intergenic 35.0%
TGTACTCTTACAAAAGCAGA+GGG + tig0039870:12167-12186 Msa1458860:intergenic 35.0%
! CTTTTAGGCGAATAGCAATA+AGG + tig0039870:12443-12462 Msa1458860:intergenic 35.0%
TAGAAATTTCATCCGACTTC+TGG - tig0039870:12474-12493 Msa1458860:intron 35.0%
GACTAAAAAACTATCCCACA+AGG + tig0039870:12500-12519 Msa1458860:intergenic 35.0%
!!! TGGGATAGTTTTTTAGTCAG+TGG - tig0039870:12502-12521 Msa1458860:intron 35.0%
!!! GGGATAGTTTTTTAGTCAGT+GGG - tig0039870:12503-12522 Msa1458860:intron 35.0%
!! TTTTTAGTCAGTGGGATAGA+AGG - tig0039870:12511-12530 Msa1458860:intron 35.0%
! GATATTTGATTTCAGGGCAT+CGG + tig0039870:12547-12566 Msa1458860:intergenic 35.0%
! CTAGTGCGATATTTGATTTC+AGG + tig0039870:12554-12573 Msa1458860:intergenic 35.0%
TTATGAGTTCGTCAACAGAA+TGG + tig0039870:12594-12613 Msa1458860:intergenic 35.0%
TTCTGTATTATGAAGCAGGA+AGG + tig0039870:12646-12665 Msa1458860:intergenic 35.0%
CATAATACAGAAGAGGAAGT+TGG - tig0039870:12654-12673 Msa1458860:intron 35.0%
TGAGGGATCTAAATTCCAAT+GGG + tig0039870:12874-12893 Msa1458860:intergenic 35.0%
! CATTCAATTTTCCATTCCTC+TGG + tig0039870:12930-12949 Msa1458860:intergenic 35.0%
ATAGTGCTATATGTGAATGC+AGG - tig0039870:13047-13066 Msa1458860:intron 35.0%
!! CAGTGCTGGTTAATACATTT+AGG + tig0039870:13114-13133 Msa1458860:intergenic 35.0%
TATTTGTATTCTGCTTTCCC+CGG - tig0039870:13367-13386 Msa1458860:CDS 35.0%
CTTGTAGAACAAAATAACCG+GGG + tig0039870:13387-13406 Msa1458860:intergenic 35.0%
!! CAAGTTTCTTAGGCTTTGTT+TGG - tig0039870:13403-13422 Msa1458860:intron 35.0%
!!! TTTTTTAGTTCCCCCAAATG+AGG - tig0039870:13630-13649 Msa1458860:intron 35.0%
TATAAAACCCTCCTCATTTG+GGG + tig0039870:13644-13663 Msa1458860:intergenic 35.0%
AAGAAATAGAGGACATTGGA+AGG + tig0039870:13689-13708 Msa1458860:intergenic 35.0%
AGAGTAAGTGGAAGAAATAG+AGG + tig0039870:13700-13719 Msa1458860:intergenic 35.0%
GGAAAAAAGGAAAGAGTAAG+TGG + tig0039870:13712-13731 Msa1458860:intergenic 35.0%
AAAGGAAAGGCTTGGAAAAA+AGG + tig0039870:13725-13744 Msa1458860:intergenic 35.0%
!! TAAGGCTTTGTTTGCAAGTT+TGG + tig0039870:13757-13776 Msa1458860:intergenic 35.0%
TAGCAGTCTGTAGTTACAAT+TGG - tig0039870:13990-14009 Msa1458860:intron 35.0%
! TTATTTAAAACTGAAGGCCG+AGG - tig0039870:14200-14219 Msa1458860:intron 35.0%
! TATTTAAAACTGAAGGCCGA+GGG - tig0039870:14201-14220 Msa1458860:intron 35.0%
GGGAAATTAAGGCCTTAATA+TGG - tig0039870:14268-14287 Msa1458860:intron 35.0%
CAGTTTGTCATTGAATACTG+TGG - tig0039870:14363-14382 Msa1458860:intron 35.0%
! TTTGTTTGAAGTGGTTTACC+AGG + tig0039870:14617-14636 Msa1458860:intergenic 35.0%
! CATTTTCTTGTCTCACAGTT+TGG + tig0039870:14763-14782 Msa1458860:intergenic 35.0%
CAAACTGTGAGACAAGAAAA+TGG - tig0039870:14761-14780 Msa1458860:intron 35.0%
GACAAGAAAATGGAATGTCA+TGG - tig0039870:14771-14790 Msa1458860:intron 35.0%
CAAGAAAATGGAATGTCATG+GGG - tig0039870:14773-14792 Msa1458860:intron 35.0%
AAGAAAATGGAATGTCATGG+GGG - tig0039870:14774-14793 Msa1458860:intron 35.0%
AAGAGTTGGAATATTTGCAC+TGG - tig0039870:14801-14820 Msa1458860:intron 35.0%
TATTCCTATTGGAACTGAAC+TGG - tig0039870:14828-14847 Msa1458860:intron 35.0%
! CTCAAATGTTCTGAATTCCT+TGG - tig0039870:14910-14929 Msa1458860:intron 35.0%
ATCATGCCCATGCATTTAAA+AGG + tig0039870:15032-15051 Msa1458860:intergenic 35.0%
! TAGTGGGTCTTAAAAACTCA+TGG + tig0039870:15070-15089 Msa1458860:intergenic 35.0%
TCACCTTTCAAGCTATTAGT+GGG + tig0039870:15086-15105 Msa1458860:intergenic 35.0%
ATCACCTTTCAAGCTATTAG+TGG + tig0039870:15087-15106 Msa1458860:intergenic 35.0%
ACTAATAGCTTGAAAGGTGA+TGG - tig0039870:15086-15105 Msa1458860:intron 35.0%
GTGCTGTATTCATCTCTAAA+AGG - tig0039870:15424-15443 Msa1458860:intron 35.0%
! TCGTTTTATCTGTTACTGAC+TGG - tig0039870:15453-15472 Msa1458860:intron 35.0%
TGCTAGGATCTCATCATTAT+GGG + tig0039870:15517-15536 Msa1458860:intergenic 35.0%
AAAGACTAAGCACAAAAGTG+GGG + tig0039870:15567-15586 Msa1458860:intergenic 35.0%
!!! ATGGTTTTGGATAAAGAGGA+AGG + tig0039870:15649-15668 Msa1458860:intergenic 35.0%
AGCTTTCAGTATAATAGCCA+TGG + tig0039870:15872-15891 Msa1458860:intergenic 35.0%
! CGGTTGAACATTTAAAACAG+TGG + tig0039870:15911-15930 Msa1458860:intergenic 35.0%
GAAAACTGAAATAGAAAGCG+AGG - tig0039870:15972-15991 Msa1458860:intron 35.0%
AAGATCCTGTTTGGTATCTT+GGG + tig0039870:16013-16032 Msa1458860:intergenic 35.0%
! TTTTTGTGCAAGATCCTGTT+TGG + tig0039870:16022-16041 Msa1458860:intergenic 35.0%
! CTTAGATCTTTTGGTAGAGA+TGG + tig0039870:16091-16110 Msa1458860:intergenic 35.0%
CATCTCTACCAAAAGATCTA+AGG - tig0039870:16089-16108 Msa1458860:intron 35.0%
TCTCTACCAAAAGATCTAAG+GGG - tig0039870:16091-16110 Msa1458860:intron 35.0%
! GGAGGAGATTTTAGATTATG+AGG - tig0039870:16191-16210 Msa1458860:intron 35.0%
GGACTAAAACTTAGTTACCT+TGG - tig0039870:16290-16309 Msa1458860:intron 35.0%
! TGTCATTTCATAGTACGATC+TGG - tig0039870:16359-16378 Msa1458860:intron 35.0%
ATGAGAACTGTCATGAATCA+CGG - tig0039870:16517-16536 Msa1458860:intron 35.0%
! GTCATCTTTTCTTTTCTGCA+TGG + tig0039870:16648-16667 Msa1458860:intergenic 35.0%
GAAAAGAAAAGATGACGCTA+CGG - tig0039870:16652-16671 Msa1458860:intron 35.0%
! AATGAAGCTTTTGACGTTCT+CGG - tig0039870:16901-16920 Msa1458860:intron 35.0%
!! CATCAATTACGGATTAGATG+AGG + tig0039870:16927-16946 Msa1458860:intergenic 35.0%
CTAGGTTCTGTTATGAACTT+CGG + tig0039870:16994-17013 Msa1458860:intergenic 35.0%
!! AAAAAGTTCTGAGTTAGTGC+TGG + tig0039870:17079-17098 Msa1458860:intergenic 35.0%
CGAAATTCATAACAGAAGCT+AGG - tig0039870:17108-17127 Msa1458860:five_prime_UTR 35.0%
ATTGATCGATCGATGTTACC+GGG + tig0039870:11557-11576 Msa1458860:intergenic 40.0%
ATCGATCGATCAATTAACGG+CGG - tig0039870:11563-11582 Msa1458860:CDS 40.0%
CACTCGATTGACATAAAGGA+AGG + tig0039870:11591-11610 Msa1458860:intergenic 40.0%
CAAGCACTCGATTGACATAA+AGG + tig0039870:11595-11614 Msa1458860:intergenic 40.0%
TCGATTGAGACAGAGAGTAA+AGG - tig0039870:11634-11653 Msa1458860:CDS 40.0%
! CAGAGAGTAAAGGCACAAAT+CGG - tig0039870:11644-11663 Msa1458860:CDS 40.0%
! AAAGGCACAAATCGGCTAAA+CGG - tig0039870:11652-11671 Msa1458860:CDS 40.0%
GGGATCTTTACCTAATGATG+CGG + tig0039870:11726-11745 Msa1458860:intergenic 40.0%
TGAAGGAAGATTGGACAATG+GGG + tig0039870:11746-11765 Msa1458860:intergenic 40.0%
ATTAGCTACGCGATTCTTAC+CGG + tig0039870:11794-11813 Msa1458860:intergenic 40.0%
GCTGGTAGAGTTTGTATATG+TGG + tig0039870:11847-11866 Msa1458860:intergenic 40.0%
CATATACAAACTCTACCAGC+CGG - tig0039870:11847-11866 Msa1458860:CDS 40.0%
TGAATTAATCTCCCAGCTAG+TGG - tig0039870:11910-11929 Msa1458860:CDS 40.0%
AGCACTGCGCAAGATTAATT+TGG + tig0039870:12103-12122 Msa1458860:intergenic 40.0%
GTGTACTCTTACAAAAGCAG+AGG + tig0039870:12168-12187 Msa1458860:intergenic 40.0%
ACTTTGTAAAGCTGTCCTGA+CGG + tig0039870:12267-12286 Msa1458860:intergenic 40.0%
ACTAAAGATCCAGCATAAGC+GGG + tig0039870:12323-12342 Msa1458860:intergenic 40.0%
CACTAAAGATCCAGCATAAG+CGG + tig0039870:12324-12343 Msa1458860:intergenic 40.0%
GAATGGAATTGGAAGTGAAG+TGG + tig0039870:12577-12596 Msa1458860:intergenic 40.0%
GTTCGTCAACAGAATGGAAT+TGG + tig0039870:12588-12607 Msa1458860:intergenic 40.0%
! ACTAGATAACTTGTGACAGC+GGG + tig0039870:12622-12641 Msa1458860:intergenic 40.0%
! CACTAGATAACTTGTGACAG+CGG + tig0039870:12623-12642 Msa1458860:intergenic 40.0%
CCTCTTCTGTATTATGAAGC+AGG + tig0039870:12650-12669 Msa1458860:intergenic 40.0%
CCTGCTTCATAATACAGAAG+AGG - tig0039870:12647-12666 Msa1458860:intron 40.0%
! CAAATCAAAGGGTACAAGGT+TGG + tig0039870:12760-12779 Msa1458860:intergenic 40.0%
CAACCTTGTACCCTTTGATT+TGG - tig0039870:12758-12777 Msa1458860:intron 40.0%
!! CTTGTACCCTTTGATTTGGA+GGG - tig0039870:12762-12781 Msa1458860:intron 40.0%
TTCCTACCCTCCAAATCAAA+GGG + tig0039870:12771-12790 Msa1458860:intergenic 40.0%
TTTCCTACCCTCCAAATCAA+AGG + tig0039870:12772-12791 Msa1458860:intergenic 40.0%
!! TTTGATTTGGAGGGTAGGAA+AGG - tig0039870:12771-12790 Msa1458860:intron 40.0%
GTGAGGGATCTAAATTCCAA+TGG + tig0039870:12875-12894 Msa1458860:intergenic 40.0%
CTTGTACGTAGCCTTTGAAT+TGG + tig0039870:12900-12919 Msa1458860:intergenic 40.0%
CAATTCAAAGGCTACGTACA+AGG - tig0039870:12898-12917 Msa1458860:CDS 40.0%
ACTTCTCTTTATCTCTGTGC+AGG - tig0039870:13002-13021 Msa1458860:intron 40.0%
! TTTTACAATGGATGCCGCTA+GGG + tig0039870:13156-13175 Msa1458860:intergenic 40.0%
! TTTTTACAATGGATGCCGCT+AGG + tig0039870:13157-13176 Msa1458860:intergenic 40.0%
CGGCATCCATTGTAAAAATC+AGG - tig0039870:13159-13178 Msa1458860:CDS 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG - tig0039870:13411-13430 Msa1458860:intron 40.0%
! TTGTATTGGAGGAGGGTTTT+GGG + tig0039870:13610-13629 Msa1458860:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG + tig0039870:13611-13630 Msa1458860:intergenic 40.0%
ATAAAACCCTCCTCATTTGG+GGG + tig0039870:13643-13662 Msa1458860:intergenic 40.0%
AATAGAGGACATTGGAAGGA+GGG + tig0039870:13685-13704 Msa1458860:intergenic 40.0%
AAATAGAGGACATTGGAAGG+AGG + tig0039870:13686-13705 Msa1458860:intergenic 40.0%
GTGGAAGAAATAGAGGACAT+TGG + tig0039870:13693-13712 Msa1458860:intergenic 40.0%
! CTTTGTTTGCAAGTTTGGAG+GGG + tig0039870:13752-13771 Msa1458860:intergenic 40.0%
!! GCTTTGTTTGCAAGTTTGGA+GGG + tig0039870:13753-13772 Msa1458860:intergenic 40.0%
AGCAAACTTGACTGCTACTA+AGG + tig0039870:13775-13794 Msa1458860:intergenic 40.0%
TTTCTGCAAGCATGAGACAT+GGG + tig0039870:14150-14169 Msa1458860:intergenic 40.0%
ATTTCTGCAAGCATGAGACA+TGG + tig0039870:14151-14170 Msa1458860:intergenic 40.0%
ATAAGTATGGGATCTGCGTT+TGG + tig0039870:14412-14431 Msa1458860:intergenic 40.0%
!! GTTTGCTTTTGCAGGTCTTA+AGG - tig0039870:14510-14529 Msa1458860:intron 40.0%
!!! TCCTTTTCTAGTTGCATCGA+TGG + tig0039870:14569-14588 Msa1458860:intergenic 40.0%
TTGAAGTGGTTTACCAGGAA+TGG + tig0039870:14612-14631 Msa1458860:intergenic 40.0%
GCACTGGAAGATATTCCTAT+TGG - tig0039870:14817-14836 Msa1458860:intron 40.0%
TATGCCAGTTCAGTTCCAAT+AGG + tig0039870:14835-14854 Msa1458860:intergenic 40.0%
AGACCCACTAATAGCTTGAA+AGG - tig0039870:15080-15099 Msa1458860:intron 40.0%
CTACTCTTCTTCCTCATGTT+TGG - tig0039870:15328-15347 Msa1458860:intron 40.0%
CTCCGATTATTCCAAACATG+AGG + tig0039870:15342-15361 Msa1458860:intergenic 40.0%
! ATGTTTGGAATAATCGGAGC+AGG - tig0039870:15343-15362 Msa1458860:intron 40.0%
AGCAGGAGGATACTTATCTA+TGG - tig0039870:15360-15379 Msa1458860:intron 40.0%
GCAGGAGGATACTTATCTAT+GGG - tig0039870:15361-15380 Msa1458860:intron 40.0%
! TATGGGAAGATGATGATGAC+AGG - tig0039870:15378-15397 Msa1458860:intron 40.0%
ATCTCATCATTATGGGGTCT+AGG + tig0039870:15510-15529 Msa1458860:intergenic 40.0%
GCTAGGATCTCATCATTATG+GGG + tig0039870:15516-15535 Msa1458860:intergenic 40.0%
GTGCTAGGATCTCATCATTA+TGG + tig0039870:15518-15537 Msa1458860:intergenic 40.0%
TAATGATGAGATCCTAGCAC+AGG - tig0039870:15518-15537 Msa1458860:intron 40.0%
AAGACTAAGCACAAAAGTGG+GGG + tig0039870:15566-15585 Msa1458860:intergenic 40.0%
GATGAACTCACGACAAATGT+TGG - tig0039870:15829-15848 Msa1458860:intron 40.0%
TGTACAGAGTGAACAATCCA+TGG - tig0039870:15852-15871 Msa1458860:intron 40.0%
ACTGAAAGCTGAAGAACCAT+CGG - tig0039870:15882-15901 Msa1458860:intron 40.0%
! TTTAAAACAGTGGACTCCGA+TGG + tig0039870:15901-15920 Msa1458860:intergenic 40.0%
TTCAACCGCTGAATTCGATT+GGG - tig0039870:15923-15942 Msa1458860:intron 40.0%
TTGATCCCAATCGAATTCAG+CGG + tig0039870:15931-15950 Msa1458860:intergenic 40.0%
CTGAATTCGATTGGGATCAA+TGG - tig0039870:15931-15950 Msa1458860:intron 40.0%
CAAGATCCTGTTTGGTATCT+TGG + tig0039870:16014-16033 Msa1458860:intergenic 40.0%
ATTCAAAGTAACACTGCTGG+AGG - tig0039870:16060-16079 Msa1458860:intron 40.0%
CTCTACCAAAAGATCTAAGG+GGG - tig0039870:16092-16111 Msa1458860:intron 40.0%
TCTACCAAAAGATCTAAGGG+GGG - tig0039870:16093-16112 Msa1458860:intron 40.0%
ATTGATGCAAAGTATGCAGC+TGG - tig0039870:16144-16163 Msa1458860:intron 40.0%
GTGCTTCCTTTGATGCTAAA+AGG + tig0039870:16170-16189 Msa1458860:intergenic 40.0%
! TTTAGCATCAAAGGAAGCAC+AGG - tig0039870:16170-16189 Msa1458860:intron 40.0%
TGACAGATGATGTGTGCATT+TGG + tig0039870:16433-16452 Msa1458860:intergenic 40.0%
ATCCTTCTCGTGTTCTTCAA+TGG + tig0039870:16714-16733 Msa1458860:intergenic 40.0%
TGTCGTAGATACACTGTCTT+GGG + tig0039870:16738-16757 Msa1458860:intergenic 40.0%
! TGTTGCTTGTACTCCTCAAA+AGG - tig0039870:16835-16854 Msa1458860:intron 40.0%
CGAAGTTCATAACAGAACCT+AGG - tig0039870:16992-17011 Msa1458860:five_prime_UTR 40.0%
! GGATTTGTTTATCAGGTCCT+AGG + tig0039870:17012-17031 Msa1458860:intergenic 40.0%
GTCTACTAGGTAGCATAACA+TGG + tig0039870:17173-17192 Msa1458860:intergenic 40.0%
AACTCTTCTTGCGTTTGCGT+TGG + tig0039870:10653-10672 Msa1458860:intergenic 45.0%
ACAAGCGAGAAAAGGGGTTT+GGG + tig0039870:10750-10769 Msa1458860:intergenic 45.0%
AGCTTGCACAAGCGAGAAAA+GGG + tig0039870:10757-10776 Msa1458860:intergenic 45.0%
AAGCTTGCACAAGCGAGAAA+AGG + tig0039870:10758-10777 Msa1458860:intergenic 45.0%
CACTCGGTAGCATTACTAAC+TGG - tig0039870:11129-11148 Msa1458860:intron 45.0%
TCTCTCTTATGGTAGGTTCC+AGG - tig0039870:11285-11304 Msa1458860:intron 45.0%
GAAAATTATTGGACCGGACC+TGG + tig0039870:11306-11325 Msa1458860:intergenic 45.0%
ACCACTGAATCCCTTGCTTT+CGG + tig0039870:11438-11457 Msa1458860:intergenic 45.0%
! GATTCAGTGGTCTTACCCTT+GGG - tig0039870:11447-11466 Msa1458860:intron 45.0%
GCTTGACTTCTCTATCTGAC+CGG - tig0039870:11610-11629 Msa1458860:CDS 45.0%
CTTGACTTCTCTATCTGACC+GGG - tig0039870:11611-11630 Msa1458860:CDS 45.0%
! GCTAGTTCTTCTCCCAATCT+CGG + tig0039870:11684-11703 Msa1458860:intergenic 45.0%
CTAATGATGCGGAGCGAATT+CGG + tig0039870:11715-11734 Msa1458860:intergenic 45.0%
AAATTGATATATCCGCCGGC+TGG + tig0039870:11865-11884 Msa1458860:intergenic 45.0%
TGCATAGCCCATGAGAATGA+TGG + tig0039870:12295-12314 Msa1458860:intergenic 45.0%
TAAAGATCCAGCATAAGCGG+GGG + tig0039870:12321-12340 Msa1458860:intergenic 45.0%
CTAAAGATCCAGCATAAGCG+GGG + tig0039870:12322-12341 Msa1458860:intergenic 45.0%
TTAGTCAGTGGGATAGAAGG+TGG - tig0039870:12514-12533 Msa1458860:intron 45.0%
! CCTCCAAATCAAAGGGTACA+AGG + tig0039870:12764-12783 Msa1458860:intergenic 45.0%
!! CCTTGTACCCTTTGATTTGG+AGG - tig0039870:12761-12780 Msa1458860:intron 45.0%
!! TACCCTTTGATTTGGAGGGT+AGG - tig0039870:12766-12785 Msa1458860:intron 45.0%
AGGTGGAGTGTGGAGTATAA+TGG - tig0039870:12791-12810 Msa1458860:intron 45.0%
!! TGGGCTGGTATACCATTGTT+TGG + tig0039870:12855-12874 Msa1458860:intergenic 45.0%
ACAATGGTATACCAGCCCAT+TGG - tig0039870:12856-12875 Msa1458860:CDS 45.0%
GGATCTAAATTCCAATGGGC+TGG + tig0039870:12870-12889 Msa1458860:intergenic 45.0%
ATCCCTCACCACCAATTCAA+AGG - tig0039870:12886-12905 Msa1458860:CDS 45.0%
!! AGCCTTTGAATTGGTGGTGA+GGG + tig0039870:12891-12910 Msa1458860:intergenic 45.0%
!! TAGCCTTTGAATTGGTGGTG+AGG + tig0039870:12892-12911 Msa1458860:intergenic 45.0%
GTACGTAGCCTTTGAATTGG+TGG + tig0039870:12897-12916 Msa1458860:intergenic 45.0%
! AATTTTCCATTCCTCTGGCC+TGG + tig0039870:12925-12944 Msa1458860:intergenic 45.0%
AAATCAGGTGAGTTCGTGCT+TGG - tig0039870:13174-13193 Msa1458860:CDS 45.0%
AATCAGGTGAGTTCGTGCTT+GGG - tig0039870:13175-13194 Msa1458860:CDS 45.0%
TCGTACTATAACCATCCTGC+AGG - tig0039870:13226-13245 Msa1458860:intron 45.0%
! CTTTTCAACTACCTGCAGGA+TGG + tig0039870:13240-13259 Msa1458860:intergenic 45.0%
! CCAACTTTTCAACTACCTGC+AGG + tig0039870:13244-13263 Msa1458860:intergenic 45.0%
CCTGCAGGTAGTTGAAAAGT+TGG - tig0039870:13241-13260 Msa1458860:intron 45.0%
GCTTTAACCTGTGTCTCTGA+AGG - tig0039870:13293-13312 Msa1458860:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - tig0039870:13415-13434 Msa1458860:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - tig0039870:13416-13435 Msa1458860:intron 45.0%
! TGTATTGGAGGAGGGTTTTG+GGG + tig0039870:13609-13628 Msa1458860:intergenic 45.0%
! TTTAGTTCCCCCAAATGAGG+AGG - tig0039870:13633-13652 Msa1458860:intron 45.0%
TTAGTTCCCCCAAATGAGGA+GGG - tig0039870:13634-13653 Msa1458860:intron 45.0%
ATAGAGGACATTGGAAGGAG+GGG + tig0039870:13684-13703 Msa1458860:intergenic 45.0%
!! GGCTTTGTTTGCAAGTTTGG+AGG + tig0039870:13754-13773 Msa1458860:intergenic 45.0%
TCTGGCTGATGAGGAAATCA+AGG - tig0039870:14232-14251 Msa1458860:intron 45.0%
AACCTTGAGCAGTGGGAAAT+AGG + tig0039870:14705-14724 Msa1458860:intergenic 45.0%
GATGTCAAACCTTGAGCAGT+GGG + tig0039870:14712-14731 Msa1458860:intergenic 45.0%
TGATGTCAAACCTTGAGCAG+TGG + tig0039870:14713-14732 Msa1458860:intergenic 45.0%
GTCATGGGGGAAATAAGAGT+TGG - tig0039870:14787-14806 Msa1458860:intron 45.0%
! TGAATGGTTTGGAGGTGCAA+AGG - tig0039870:14867-14886 Msa1458860:intron 45.0%
TTCCTTGGAGCAAAATCTCG+TGG - tig0039870:14925-14944 Msa1458860:intron 45.0%
! AACCACGAGATTTTGCTCCA+AGG + tig0039870:14930-14949 Msa1458860:intergenic 45.0%
! TAGCTTGAAAGGTGATGGCT+AGG - tig0039870:15091-15110 Msa1458860:intron 45.0%
! TTTGGAATAATCGGAGCAGG+AGG - tig0039870:15346-15365 Msa1458860:intron 45.0%
TCATTATGGGGTCTAGGAGT+GGG + tig0039870:15504-15523 Msa1458860:intergenic 45.0%
ATCATTATGGGGTCTAGGAG+TGG + tig0039870:15505-15524 Msa1458860:intergenic 45.0%
TCCTTTATATGACTCTGCGG+AGG - tig0039870:15807-15826 Msa1458860:intron 45.0%
TCCTCCGCAGAGTCATATAA+AGG + tig0039870:15811-15830 Msa1458860:intergenic 45.0%
GTTCAACCGCTGAATTCGAT+TGG - tig0039870:15922-15941 Msa1458860:intron 45.0%
TCGATTGGGATCAATGGCTT+AGG - tig0039870:15937-15956 Msa1458860:intron 45.0%
GTACTCCCAAGATACCAAAC+AGG - tig0039870:16005-16024 Msa1458860:intron 45.0%
CGCATTCAAAGTAACACTGC+TGG - tig0039870:16057-16076 Msa1458860:intron 45.0%
! CTTTCCCCCCTTAGATCTTT+TGG + tig0039870:16100-16119 Msa1458860:intergenic 45.0%
!!! AGCTGGCCTTTTAGCATCAA+AGG - tig0039870:16161-16180 Msa1458860:intron 45.0%
TTCTCGTGTTCTTCAATGGC+AGG + tig0039870:16710-16729 Msa1458860:intergenic 45.0%
TGCCATTGAAGAACACGAGA+AGG - tig0039870:16709-16728 Msa1458860:intron 45.0%
CTGTCGTAGATACACTGTCT+TGG + tig0039870:16739-16758 Msa1458860:intergenic 45.0%
AGTAGCAGAGAAGTGGATAC+AGG - tig0039870:16757-16776 Msa1458860:CDS 45.0%
TTCCTGCCTAAAACTCAAGG+CGG - tig0039870:16781-16800 Msa1458860:CDS 45.0%
! CAAACTCCGCCTTGAGTTTT+AGG + tig0039870:16790-16809 Msa1458860:intergenic 45.0%
! TTCAGTACCTTTTGCTTGGC+CGG + tig0039870:16864-16883 Msa1458860:intergenic 45.0%
! CGACTTCAGTACCTTTTGCT+TGG + tig0039870:16868-16887 Msa1458860:intergenic 45.0%
GTGCACTAGGTAGCATAACA+TGG + tig0039870:17057-17076 Msa1458860:intergenic 45.0%
!!! TATTATTATTATTATTTTGA+AGG - tig0039870:10922-10941 Msa1458860:CDS 5.0%
! GTTGGTGAAAAAGGGAAGCG+AGG - tig0039870:10604-10623 Msa1458860:three_prime_UTR 50.0%
CGTTGGAACTGTAGTGGTAG+CGG + tig0039870:10636-10655 Msa1458860:intergenic 50.0%
CGTTTGCGTTGGAACTGTAG+TGG + tig0039870:10642-10661 Msa1458860:intergenic 50.0%
AAGCGAGAAAAGGGGTTTGG+GGG + tig0039870:10748-10767 Msa1458860:intergenic 50.0%
CAAGCGAGAAAAGGGGTTTG+GGG + tig0039870:10749-10768 Msa1458860:intergenic 50.0%
CACAAGCGAGAAAAGGGGTT+TGG + tig0039870:10751-10770 Msa1458860:intergenic 50.0%
GCTTGCACAAGCGAGAAAAG+GGG + tig0039870:10756-10775 Msa1458860:intergenic 50.0%
GGCAAATCTTCAGCAGCATG+AGG + tig0039870:10950-10969 Msa1458860:intergenic 50.0%
CTTATGGTAGGTTCCAGGTC+CGG - tig0039870:11290-11309 Msa1458860:intron 50.0%
! GGATTCAGTGGTCTTACCCT+TGG - tig0039870:11446-11465 Msa1458860:intron 50.0%
AGAAGAGAACCTACAAGGGC+CGG + tig0039870:11473-11492 Msa1458860:intergenic 50.0%
CTGTCTCTGTTACTGCTTCC+CGG - tig0039870:11536-11555 Msa1458860:intron 50.0%
ACTCTCTGTCTCAATCGACC+CGG + tig0039870:11632-11651 Msa1458860:intergenic 50.0%
TAAACGGCTGAGTCCGAGAT+TGG - tig0039870:11668-11687 Msa1458860:CDS 50.0%
AAACGGCTGAGTCCGAGATT+GGG - tig0039870:11669-11688 Msa1458860:CDS 50.0%
CGAATTCGCTCCGCATCATT+AGG - tig0039870:11713-11732 Msa1458860:CDS 50.0%
ATACAAACTCTACCAGCCGG+CGG - tig0039870:11850-11869 Msa1458860:CDS 50.0%
!!! ATTTTGGTTGCGAGGCGGAA+GGG + tig0039870:12050-12069 Msa1458860:intergenic 50.0%
!!! TATTTTGGTTGCGAGGCGGA+AGG + tig0039870:12051-12070 Msa1458860:intergenic 50.0%
ATACTCTTGCGAAGACCGTC+AGG - tig0039870:12249-12268 Msa1458860:intron 50.0%
TATCCCACAAGGCCAGAAGT+CGG + tig0039870:12489-12508 Msa1458860:intergenic 50.0%
GATTTGGAGGGTAGGAAAGG+TGG - tig0039870:12774-12793 Msa1458860:intron 50.0%
AAAGGCTACGTACAAGGACC+AGG - tig0039870:12904-12923 Msa1458860:CDS 50.0%
GTGCAGGCATAAGAAGCAGA+AGG - tig0039870:13018-13037 Msa1458860:intron 50.0%
CAGGCATAAGAAGCAGAAGG+AGG - tig0039870:13021-13040 Msa1458860:intron 50.0%
GCATAAGAAGCAGAAGGAGG+AGG - tig0039870:13024-13043 Msa1458860:intron 50.0%
GATGATCCTGACAGTGCATG+TGG - tig0039870:13079-13098 Msa1458860:intron 50.0%
CTGACAGTGCATGTGGAGAT+GGG - tig0039870:13086-13105 Msa1458860:intron 50.0%
ACAAGTGCCTTCAGAGACAC+AGG + tig0039870:13303-13322 Msa1458860:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - tig0039870:13414-13433 Msa1458860:intron 50.0%
GGGAGGGGGAGAGAAATATA+GGG - tig0039870:13436-13455 Msa1458860:intron 50.0%
GGAGGGGGAGAGAAATATAG+GGG - tig0039870:13437-13456 Msa1458860:intron 50.0%
!!! TATTGGAGGAGGGTTTTGGG+GGG + tig0039870:13607-13626 Msa1458860:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+GGG + tig0039870:13608-13627 Msa1458860:intergenic 50.0%
TTGGAGGGGAAGGAAAGGAA+AGG + tig0039870:13738-13757 Msa1458860:intergenic 50.0%
CAAGTTTGGAGGGGAAGGAA+AGG + tig0039870:13743-13762 Msa1458860:intergenic 50.0%
GTTTGCAAGTTTGGAGGGGA+AGG + tig0039870:13748-13767 Msa1458860:intergenic 50.0%
TTAAAACTGAAGGCCGAGGG+TGG - tig0039870:14204-14223 Msa1458860:intron 50.0%
TAAAACTGAAGGCCGAGGGT+GGG - tig0039870:14205-14224 Msa1458860:intron 50.0%
CTTGAGCAGTGGGAAATAGG+AGG + tig0039870:14702-14721 Msa1458860:intergenic 50.0%
CTCCTATTTCCCACTGCTCA+AGG - tig0039870:14700-14719 Msa1458860:CDS 50.0%
AACATTTGAGCGCACCACAG+AGG + tig0039870:14900-14919 Msa1458860:intergenic 50.0%
CATTATGGGGTCTAGGAGTG+GGG + tig0039870:15503-15522 Msa1458860:intergenic 50.0%
CAAGCACAAGTTCCTGTGCT+AGG + tig0039870:15533-15552 Msa1458860:intergenic 50.0%
! AGCATCAAAGGAAGCACAGG+AGG - tig0039870:16173-16192 Msa1458860:intron 50.0%
CTACGACAGTAGCAGAGAAG+TGG - tig0039870:16750-16769 Msa1458860:intron 50.0%
GGCTTCCTGCCTAAAACTCA+AGG - tig0039870:16778-16797 Msa1458860:CDS 50.0%
!! TGTACTCCTCAAAAGGCACC+CGG - tig0039870:16842-16861 Msa1458860:intron 50.0%
! TCAGTACCTTTTGCTTGGCC+GGG + tig0039870:16863-16882 Msa1458860:intergenic 50.0%
!! TGAGTTAGTGCTGGTGCACT+AGG + tig0039870:17070-17089 Msa1458860:intergenic 50.0%
AGCGAGAAAAGGGGTTTGGG+GGG + tig0039870:10747-10766 Msa1458860:intergenic 55.0%
! TTGTTGGTGGGCCGAAAGCA+AGG - tig0039870:11424-11443 Msa1458860:intron 55.0%
! TGTTGGTGGGCCGAAAGCAA+GGG - tig0039870:11425-11444 Msa1458860:intron 55.0%
GCCGAAAGCAAGGGATTCAG+TGG - tig0039870:11434-11453 Msa1458860:intron 55.0%
GTGGTCGCCCAGTATGACAT+AGG + tig0039870:11828-11847 Msa1458860:intergenic 55.0%
TGCATTTCCCCCGCTTATGC+TGG - tig0039870:12311-12330 Msa1458860:intron 55.0%
!! TCATCCGACTTCTGGCCTTG+TGG - tig0039870:12482-12501 Msa1458860:intron 55.0%
!! CATCCGACTTCTGGCCTTGT+GGG - tig0039870:12483-12502 Msa1458860:intron 55.0%
AGGGTAGGAAAGGTGGAGTG+TGG - tig0039870:12781-12800 Msa1458860:intron 55.0%
CCATCTCCACATGCACTGTC+AGG + tig0039870:13088-13107 Msa1458860:intergenic 55.0%
CCTGACAGTGCATGTGGAGA+TGG - tig0039870:13085-13104 Msa1458860:intron 55.0%
! ACCCCTGGATTTTGCCCTAG+CGG - tig0039870:13139-13158 Msa1458860:intron 55.0%
TGCCGCTAGGGCAAAATCCA+GGG + tig0039870:13144-13163 Msa1458860:intergenic 55.0%
ATGCCGCTAGGGCAAAATCC+AGG + tig0039870:13145-13164 Msa1458860:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - tig0039870:13419-13438 Msa1458860:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - tig0039870:13420-13439 Msa1458860:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - tig0039870:13421-13440 Msa1458860:intron 55.0%
GGGGAGGGGGAGAGAAATAT+AGG - tig0039870:13435-13454 Msa1458860:intron 55.0%
!!! AGGAGGGTTTTGGGGGGTTT+GGG + tig0039870:13601-13620 Msa1458860:intergenic 55.0%
GGGGAAGGAAAGGAAAGGCT+TGG + tig0039870:13733-13752 Msa1458860:intergenic 55.0%
AAAACTGAAGGCCGAGGGTG+GGG - tig0039870:14206-14225 Msa1458860:intron 55.0%
!!! CTCCGCCTTGAGTTTTAGGC+AGG + tig0039870:16786-16805 Msa1458860:intergenic 55.0%
! CAGTGGTCTTACCCTTGGGC+CGG - tig0039870:11451-11470 Msa1458860:intron 60.0%
ACGTACAAGGACCAGGCCAG+AGG - tig0039870:12911-12930 Msa1458860:CDS 60.0%
CAAGGACCAGGCCAGAGGAA+TGG - tig0039870:12916-12935 Msa1458860:CDS 60.0%
! ACCAGCACTGAATGCACCCC+TGG - tig0039870:13124-13143 Msa1458860:intron 60.0%
! TCCAGGGGTGCATTCAGTGC+TGG + tig0039870:13128-13147 Msa1458860:intergenic 60.0%
GCCGCTAGGGCAAAATCCAG+GGG + tig0039870:13143-13162 Msa1458860:intergenic 60.0%
TTGGGAGTTTGGAGGGGAGG+GGG - tig0039870:13422-13441 Msa1458860:intron 60.0%
!!! GGGTTTTGGGGGGTTTGGGA+GGG + tig0039870:13597-13616 Msa1458860:intergenic 60.0%
!!! AGGGTTTTGGGGGGTTTGGG+AGG + tig0039870:13598-13617 Msa1458860:intergenic 60.0%
!!! GAGGAGGGTTTTGGGGGGTT+TGG + tig0039870:13602-13621 Msa1458860:intergenic 60.0%
! GTGGGGTCTTCTGGCTGATG+AGG - tig0039870:14223-14242 Msa1458860:intron 60.0%
GCAAAGGTTCGCTGCCTCTG+TGG - tig0039870:14883-14902 Msa1458860:intron 60.0%
ATGGGGTCTAGGAGTGGGGA+AGG + tig0039870:15499-15518 Msa1458860:intergenic 60.0%
! AAGGCACCCGGCCAAGCAAA+AGG - tig0039870:16854-16873 Msa1458860:intron 60.0%
ACCTACAAGGGCCGGCCCAA+GGG + tig0039870:11465-11484 Msa1458860:intergenic 65.0%
AACCTACAAGGGCCGGCCCA+AGG + tig0039870:11466-11485 Msa1458860:intergenic 65.0%
CAGCCAGAAGACCCCACCCT+CGG + tig0039870:14220-14239 Msa1458860:intergenic 65.0%
! GCTTGGCCGGGTGCCTTTTG+AGG + tig0039870:16851-16870 Msa1458860:intergenic 65.0%
ACCCTTGGGCCGGCCCTTGT+AGG - tig0039870:11461-11480 Msa1458860:intron 70.0%
AGGCCGAGGGTGGGGTCTTC+TGG - tig0039870:14214-14233 Msa1458860:intron 70.0%
Chromosome Type Strat End Strand Name
tig0039870 gene 10566 17199 10566 ID=Msa1458860;Name=Msa1458860
tig0039870 mRNA 10566 17199 10566 ID=Msa1458860-mRNA-1;Parent=Msa1458860;Name=Msa1458860-mRNA-1;_AED=0.15;_eAED=0.15;_QI=270|1|1|1|1|1|10|259|479
tig0039870 exon 10566 11112 10566 ID=Msa1458860-mRNA-1:exon:21988;Parent=Msa1458860-mRNA-1
tig0039870 exon 11553 11976 11553 ID=Msa1458860-mRNA-1:exon:21987;Parent=Msa1458860-mRNA-1
tig0039870 exon 12366 12400 12366 ID=Msa1458860-mRNA-1:exon:21986;Parent=Msa1458860-mRNA-1
tig0039870 exon 12811 13009 12811 ID=Msa1458860-mRNA-1:exon:21985;Parent=Msa1458860-mRNA-1
tig0039870 exon 13148 13241 13148 ID=Msa1458860-mRNA-1:exon:21984;Parent=Msa1458860-mRNA-1
tig0039870 exon 13324 13408 13324 ID=Msa1458860-mRNA-1:exon:21983;Parent=Msa1458860-mRNA-1
tig0039870 exon 13512 13598 13512 ID=Msa1458860-mRNA-1:exon:21982;Parent=Msa1458860-mRNA-1
tig0039870 exon 14585 14741 14585 ID=Msa1458860-mRNA-1:exon:21981;Parent=Msa1458860-mRNA-1
tig0039870 exon 16754 16821 16754 ID=Msa1458860-mRNA-1:exon:21980;Parent=Msa1458860-mRNA-1
tig0039870 exon 16927 17199 16927 ID=Msa1458860-mRNA-1:exon:21979;Parent=Msa1458860-mRNA-1
tig0039870 five_prime_UTR 16930 17199 16930 ID=Msa1458860-mRNA-1:five_prime_utr;Parent=Msa1458860-mRNA-1
tig0039870 CDS 16927 16929 16927 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 16754 16821 16754 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 14585 14741 14585 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 13512 13598 13512 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 13324 13408 13324 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 13148 13241 13148 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 12811 13009 12811 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 12366 12400 12366 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 11553 11976 11553 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 CDS 10825 11112 10825 ID=Msa1458860-mRNA-1:cds;Parent=Msa1458860-mRNA-1
tig0039870 three_prime_UTR 10566 10824 10566 ID=Msa1458860-mRNA-1:three_prime_utr;Parent=Msa1458860-mRNA-1
Gene Sequence

>Msa1458860

ATGGAACCTCATGCTGCTGAAGATTTGCCTCAATACATTCATATCAATCAAAATGATTTTTTTATGCGAAGGCATAAGAAGCAGAAGGAGGAGGATAGTGCTATATGTGAATGCAGGTATGATGAAGATGATCCTGACAGTGCATGTGGAGATGGGTGCCTAAATGTATTAACCAGCACTGAATGCACCCCTGGATTTTGCCCTAGCGGCATCCATTGTAAAAATCAGAAATTTCAGAAGCGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTCTGGCTGATGAGGAAATCAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGCAAAGAAGCCAAACGCAGATCCCATACTTATGAAATTCAAGGTCTTAAGGATGCATTTATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAAGGAAGCCTTGCAAGATTTATAAACCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCATGGGGGAAATAAGAGTTGGAATATTTGCACTGGAAGATATTCCTATTGGAACTGAACTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTCAAATGTTCTGAATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACTCACGACAAATGTTGGTGTACAGAGTGAACAATCCATGGCTATTATACTGAAAGCTGAAGAACCATCGGAGTCCACTGTTTTAAATGTTCAACCGCTGAATTCGATTGGGATCAATGGCTTAGGTATTCAGAAAATGAAAACTGAAATAGAAAGCGAGGACATGAAGTTGTACTCCCAAGATACCAAACAGGATCTTGCACAAAAAAATGCAATGATATCGCGCATTCAAAGTAACACTGCTGGAGGAAAGTCCATCTCTACCAAAAGATCTAAGGGGGGAAAGCTTAAAAATCACACACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTAGCATCAAAGGAAGCACAGGAGGAGATTTTAGATTATGAGAAAAGAAAAGATGACGCTACGGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATTGAAGAACACGAGAAGGATACCCAAGACAGTGTATCTACGACAGTAGCAGAGAAGTGGATACAGGCTTCCTGCCTAAAACTCAAGGCGGAGTTTGATCTTTACTCGTCAATTATTAAAAATGTTGCTTGTACTCCTCAAAAGGCACCCGGCCAAGCAAAAGGTACTGAAGTCGATAACGAAGACAAAATGAAGCTTTTGACGTTCTCGGCCTCATCTAATCCGTAA
Protein sequence

>Msa1458860

MEPHAAEDLPQYIHINQNDFFMRRHKKQKEEDSAICECRYDEDDPDSACGDGCLNVLTSTECTPGFCPSGIHCKNQKFQKREYAKTKLFKTEGRGWGLLADEEIKAGQFVIEYCGEVISCKEAKRRSHTYEIQGLKDAFIISLNASESIDATRKGSLARFINHSCQPNCETRKWNVMGEIRVGIFALEDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSEFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTTNVGVQSEQSMAIILKAEEPSESTVLNVQPLNSIGINGLGIQKMKTEIESEDMKLYSQDTKQDLAQKNAMISRIQSNTAGGKSISTKRSKGGKLKNHTQKKIDAKYAAGLLASKEAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHEKDTQDSVSTTVAEKWIQASCLKLKAEFDLYSSIIKNVACTPQKAPGQAKGTEVDNEDKMKLLTFSASSNP*