Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175270 | sp|Q66GR8|NET3A_ARATH | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 2.01e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175270 | A0A072VN48 | 92.276 | 492 | 38 | 0 | 1 | 492 | 1 | 492 | 0.0 | 896 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054390 | Msa0175270 | 0.804675 | 1.927371e-49 | -8.615850e-47 |
| Msa0175270 | Msa1346590 | 0.835812 | 1.349351e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175270 | MtrunA17_Chr1g0196081 | 92.276 | 492 | 38 | 0 | 1 | 492 | 1 | 492 | 0.0 | 896 |
| Msa0175270 | MtrunA17_Chr7g0268631 | 57.028 | 249 | 84 | 6 | 8 | 235 | 45 | 291 | 3.35e-78 | 248 |
| Msa0175270 | MtrunA17_Chr7g0268631 | 58.730 | 126 | 52 | 0 | 364 | 489 | 209 | 334 | 5.75e-39 | 144 |
| Msa0175270 | MtrunA17_Chr1g0204981 | 59.494 | 79 | 31 | 1 | 17 | 95 | 15 | 92 | 5.65e-25 | 109 |
| Msa0175270 | MtrunA17_Chr1g0185241 | 53.261 | 92 | 42 | 1 | 1 | 92 | 1 | 91 | 1.11e-24 | 108 |
| Msa0175270 | MtrunA17_Chr5g0432781 | 55.914 | 93 | 40 | 1 | 4 | 95 | 8 | 100 | 2.65e-24 | 106 |
| Msa0175270 | MtrunA17_Chr7g0260161 | 48.246 | 114 | 56 | 2 | 17 | 130 | 15 | 125 | 3.47e-24 | 107 |
| Msa0175270 | MtrunA17_Chr5g0394641 | 56.962 | 79 | 33 | 1 | 17 | 95 | 15 | 92 | 2.64e-23 | 104 |
| Msa0175270 | MtrunA17_Chr5g0412211 | 31.088 | 193 | 128 | 2 | 8 | 200 | 2 | 189 | 2.31e-21 | 98.2 |
| Msa0175270 | MtrunA17_Chr5g0427501 | 40.909 | 88 | 52 | 0 | 8 | 95 | 2 | 89 | 5.86e-18 | 87.4 |
| Msa0175270 | MtrunA17_Chr8g0367521 | 37.500 | 88 | 55 | 0 | 8 | 95 | 2 | 89 | 3.94e-17 | 84.7 |
| Msa0175270 | MtrunA17_Chr3g0107891 | 55.556 | 63 | 28 | 0 | 33 | 95 | 9 | 71 | 4.02e-16 | 80.9 |
| Msa0175270 | MtrunA17_Chr3g0132861 | 45.205 | 73 | 38 | 1 | 25 | 95 | 14 | 86 | 1.66e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175270 | AT1G03470.2 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 2.05e-40 | 147 |
| Msa0175270 | AT1G03470.3 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 2.05e-40 | 147 |
| Msa0175270 | AT1G03470.1 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 2.05e-40 | 147 |
| Msa0175270 | AT1G03470.4 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 2.05e-40 | 147 |
| Msa0175270 | AT2G47920.2 | 60.000 | 80 | 32 | 0 | 14 | 93 | 7 | 86 | 2.73e-29 | 115 |
| Msa0175270 | AT2G47920.1 | 60.000 | 80 | 32 | 0 | 14 | 93 | 7 | 86 | 2.73e-29 | 115 |
| Msa0175270 | AT3G22790.1 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 9.44e-25 | 109 |
| Msa0175270 | AT3G22790.3 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 9.44e-25 | 109 |
| Msa0175270 | AT3G22790.2 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 9.44e-25 | 109 |
| Msa0175270 | AT1G03080.3 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 2.54e-24 | 107 |
| Msa0175270 | AT1G03080.1 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 2.54e-24 | 107 |
| Msa0175270 | AT1G03080.2 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 2.54e-24 | 107 |
| Msa0175270 | AT2G30500.2 | 47.000 | 100 | 48 | 1 | 1 | 95 | 1 | 100 | 1.10e-22 | 101 |
| Msa0175270 | AT2G30500.1 | 47.000 | 100 | 48 | 1 | 1 | 95 | 1 | 100 | 1.10e-22 | 101 |
| Msa0175270 | AT5G10500.1 | 31.863 | 204 | 123 | 3 | 8 | 204 | 2 | 196 | 3.34e-22 | 100 |
| Msa0175270 | AT2G30500.3 | 48.276 | 87 | 45 | 0 | 9 | 95 | 13 | 99 | 4.38e-22 | 99.8 |
| Msa0175270 | AT4G14760.4 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 7.04e-22 | 100 |
| Msa0175270 | AT4G14760.2 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 7.04e-22 | 100 |
| Msa0175270 | AT4G14760.3 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 7.04e-22 | 100 |
| Msa0175270 | AT4G14760.1 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 7.04e-22 | 100 |
| Msa0175270 | AT4G02710.1 | 53.947 | 76 | 34 | 1 | 17 | 92 | 15 | 89 | 1.20e-21 | 99.4 |
| Msa0175270 | AT2G22560.1 | 31.156 | 199 | 133 | 3 | 8 | 204 | 2 | 198 | 1.70e-21 | 99.0 |
| Msa0175270 | AT1G09720.1 | 45.455 | 88 | 48 | 0 | 8 | 95 | 2 | 89 | 1.42e-20 | 95.9 |
| Msa0175270 | AT5G58320.5 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 4.55e-20 | 93.6 |
| Msa0175270 | AT5G58320.2 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 4.55e-20 | 93.6 |
| Msa0175270 | AT5G58320.1 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 6.02e-20 | 93.2 |
| Msa0175270 | AT5G58320.4 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 6.02e-20 | 93.2 |
| Msa0175270 | AT1G58215.1 | 42.353 | 85 | 49 | 0 | 8 | 92 | 2 | 86 | 5.57e-18 | 87.8 |
| Msa0175270 | AT4G03153.1 | 37.126 | 167 | 83 | 7 | 15 | 177 | 5 | 153 | 4.00e-17 | 80.5 |
| Msa0175270 | AT5G58320.3 | 52.632 | 57 | 27 | 0 | 39 | 95 | 1 | 57 | 2.58e-13 | 72.4 |
Find 77 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGTCTTCCATTTCT+TGG | 0.290545 | 1_4:-61172364 | None:intergenic |
| CATTACTACTTCATTACTAA+TGG | 0.327841 | 1_4:-61171635 | None:intergenic |
| AGCAGGCGAATTCCGGATTC+AGG | 0.330739 | 1_4:-61171271 | None:intergenic |
| ATAAGTTTGTTGAACTCAAA+TGG | 0.353839 | 1_4:-61172381 | None:intergenic |
| AGGGGTGAGCAGGCGAATTC+CGG | 0.363649 | 1_4:-61171278 | None:intergenic |
| TAAGTTTGTTGAACTCAAAT+GGG | 0.375260 | 1_4:-61172380 | None:intergenic |
| ATTCTCAGGGAAATTGCTTA+AGG | 0.376008 | 1_4:+61172410 | Msa0175270:CDS |
| AAACTTATTGAAACATTCTC+AGG | 0.390309 | 1_4:+61172396 | Msa0175270:CDS |
| CTTCATTACTTCATTGCAAA+TGG | 0.404602 | 1_4:-61172082 | None:intergenic |
| CTAAGGAATCTGCCAAGAAA+TGG | 0.413578 | 1_4:+61172352 | Msa0175270:CDS |
| TTCTCAGGGAAATTGCTTAA+GGG | 0.421637 | 1_4:+61172411 | Msa0175270:CDS |
| CTTCATCACTTCGTTATTGA+CGG | 0.424207 | 1_4:-61171824 | None:intergenic |
| AGTCTCTCAATTTCGCTTGT+CGG | 0.431669 | 1_4:-61171472 | None:intergenic |
| CGAAGAGGAGGTTCAGTTTG+TGG | 0.438529 | 1_4:+61171429 | Msa0175270:CDS |
| GAAAGAGAATGAAGCACAAA+AGG | 0.439250 | 1_4:+61172131 | Msa0175270:CDS |
| TGATGAAGTGATGATGTTGA+TGG | 0.446383 | 1_4:+61172182 | Msa0175270:CDS |
| GAAAGAGAATGAAGTGCAAA+AGG | 0.447601 | 1_4:+61171966 | Msa0175270:CDS |
| TGAACCTCCTCTTCGTGCTC+AGG | 0.452235 | 1_4:-61171421 | None:intergenic |
| CTTCATTACGTCATTACAAA+TGG | 0.455975 | 1_4:-61171731 | None:intergenic |
| TCAACCATGCTCACAAGCTC+TGG | 0.456514 | 1_4:-61171196 | None:intergenic |
| AAAAGAGAATGAAGCGCATA+AGG | 0.456733 | 1_4:+61171591 | Msa0175270:CDS |
| CATCATCACTTCATCACAAA+TGG | 0.461968 | 1_4:-61172175 | None:intergenic |
| GAGACCAGAGCTTGTGAGCA+TGG | 0.471230 | 1_4:+61171192 | Msa0175270:CDS |
| TCAAAACTCACCGACTTCTC+TGG | 0.472455 | 1_4:-61171325 | None:intergenic |
| GCATGGTTGAAGATTTCTAT+AGG | 0.473560 | 1_4:+61171209 | Msa0175270:CDS |
| GATCAAGTCAGGCCTGAATC+CGG | 0.480759 | 1_4:+61171259 | Msa0175270:CDS |
| CTTCATTAGTTCATTACTGA+TGG | 0.481194 | 1_4:-61171917 | None:intergenic |
| ATGAAGTAGTAATGAAGTTG+AGG | 0.483006 | 1_4:+61171644 | Msa0175270:CDS |
| AACAATAGATATGCTGAAGC+AGG | 0.489603 | 1_4:+61172302 | Msa0175270:CDS |
| CAATGAAGTAGTGAAGTTGA+GGG | 0.492449 | 1_4:+61172017 | Msa0175270:CDS |
| ATGAAGCAGAAGGGGTGAGC+AGG | 0.496104 | 1_4:-61171288 | None:intergenic |
| ACAATACTAGGCTTATTCCT+TGG | 0.496896 | 1_4:-61172438 | None:intergenic |
| GTGAATAAAGCACAGAAGGA+TGG | 0.505127 | 1_4:+61171691 | Msa0175270:CDS |
| CTGAACGGTATGATCAAGTC+AGG | 0.509244 | 1_4:+61171248 | Msa0175270:CDS |
| TGATGAAGTAATGAAGTTGA+GGG | 0.510431 | 1_4:+61171549 | Msa0175270:CDS |
| TGAAGAGAAGAAGATTCATA+AGG | 0.513957 | 1_4:+61171498 | Msa0175270:CDS |
| GCAATGTTGAAATTAATTGA+AGG | 0.516501 | 1_4:+61171124 | Msa0175270:CDS |
| TCTCAGGGAAATTGCTTAAG+GGG | 0.517388 | 1_4:+61172412 | Msa0175270:CDS |
| TTGATGAAGTAATGAAGTTG+AGG | 0.524579 | 1_4:+61171548 | Msa0175270:CDS |
| GATGAGAAGCTTCATAGCTA+AGG | 0.524901 | 1_4:+61172335 | Msa0175270:CDS |
| TGAAGTAGTAATGAAGTTGA+GGG | 0.533088 | 1_4:+61171645 | Msa0175270:CDS |
| GCAATGAAGTAGTGAAGTTG+AGG | 0.536672 | 1_4:+61172016 | Msa0175270:CDS |
| GAAAGTGAATAAAGCACAGA+AGG | 0.536904 | 1_4:+61171687 | Msa0175270:CDS |
| GAAAGACAAAGAGAAAATAG+AGG | 0.538013 | 1_4:+61172260 | Msa0175270:CDS |
| TAATGAACTAATGAAGTTGA+GGG | 0.539882 | 1_4:+61171924 | Msa0175270:CDS |
| CATCTCAGCTCTTTGTGCAA+AGG | 0.544599 | 1_4:-61171158 | None:intergenic |
| TAATGACGTAATGAAGTTGA+GGG | 0.552405 | 1_4:+61171738 | Msa0175270:CDS |
| GTAATGAACTAATGAAGTTG+AGG | 0.555988 | 1_4:+61171923 | Msa0175270:CDS |
| AATTGCTTAAGGGGATTCCA+AGG | 0.560172 | 1_4:+61172421 | Msa0175270:CDS |
| TTCTGAGAATTGTGATGTAG+AGG | 0.561390 | 1_4:+61171372 | Msa0175270:CDS |
| GTAATGACGTAATGAAGTTG+AGG | 0.563801 | 1_4:+61171737 | Msa0175270:CDS |
| CGTCACAGTCACACTGGTGG+TGG | 0.568587 | 1_4:+61169852 | Msa0175270:CDS |
| AAGAATGAACTCAAGCAGAA+AGG | 0.580989 | 1_4:+61171799 | Msa0175270:CDS |
| TGGCTTCAATCTATACTCAC+TGG | 0.581171 | 1_4:+61169908 | Msa0175270:CDS |
| GAATGCTTAAATGAAGCAGA+AGG | 0.588387 | 1_4:-61171298 | None:intergenic |
| GCATTCTCAACCAGAGAAGT+CGG | 0.609142 | 1_4:+61171315 | Msa0175270:CDS |
| AAGCCATGTTGATCTTCTAA+CGG | 0.609448 | 1_4:-61169891 | None:intergenic |
| ATAACGAAGTGATGAAGCTG+AGG | 0.621206 | 1_4:+61171830 | Msa0175270:CDS |
| AACTTATTGAAACATTCTCA+GGG | 0.622302 | 1_4:+61172397 | Msa0175270:CDS |
| TGAACTAATGAAGTTGAGGG+AGG | 0.627852 | 1_4:+61171927 | Msa0175270:CDS |
| ATCTAAGTAAAGAAACAGCA+AGG | 0.630006 | 1_4:+61169786 | None:intergenic |
| ATCAACCGTCACAGTCACAC+TGG | 0.631274 | 1_4:+61169846 | Msa0175270:CDS |
| AATGCTTAAATGAAGCAGAA+GGG | 0.631992 | 1_4:-61171297 | None:intergenic |
| ATGCTTAAATGAAGCAGAAG+GGG | 0.634860 | 1_4:-61171296 | None:intergenic |
| TTGTGATGTAGAGGAATCTG+TGG | 0.636948 | 1_4:+61171381 | Msa0175270:CDS |
| TGATCCTGAGCACGAAGAGG+AGG | 0.641241 | 1_4:+61171417 | Msa0175270:CDS |
| AAGTTTGTTGAACTCAAATG+GGG | 0.655479 | 1_4:-61172379 | None:intergenic |
| TGATGATCCTGAGCACGAAG+AGG | 0.664746 | 1_4:+61171414 | Msa0175270:CDS |
| ACAAGCGAAATTGAGAGACT+CGG | 0.669248 | 1_4:+61171475 | Msa0175270:CDS |
| AACCGTCACAGTCACACTGG+TGG | 0.670502 | 1_4:+61169849 | Msa0175270:CDS |
| TAACGAAGTGATGAAGCTGA+GGG | 0.678554 | 1_4:+61171831 | Msa0175270:CDS |
| AACACCGCTTGTTAGCTGAA+CGG | 0.678597 | 1_4:+61171233 | Msa0175270:CDS |
| CCATGTTGATCTTCTAACGG+TGG | 0.679481 | 1_4:-61169888 | None:intergenic |
| AGAGCTGAATGAGAAGACAA+AGG | 0.680186 | 1_4:+61171102 | Msa0175270:intron |
| CATACCGTTCAGCTAACAAG+CGG | 0.687994 | 1_4:-61171237 | None:intergenic |
| CACCACCAGTGTGACTGTGA+CGG | 0.706302 | 1_4:-61169851 | None:intergenic |
| CCACCGTTAGAAGATCAACA+TGG | 0.710207 | 1_4:+61169888 | Msa0175270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTAATTAGTGCT+AGG | + | chr1_4:61169981-61170000 | Msa0175270:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | + | chr1_4:61170106-61170125 | Msa0175270:intron | 15.0% |
| !! | ATACTACAAATTATATTACT+CGG | - | chr1_4:61170852-61170871 | None:intergenic | 15.0% |
| !! | GAAATTAAGTAATATGTATA+TGG | + | chr1_4:61171064-61171083 | Msa0175270:intron | 15.0% |
| !!! | TTAGTTTTTGATGAAGAATT+AGG | + | chr1_4:61170192-61170211 | Msa0175270:intron | 20.0% |
| !!! | TTTTTTTTCTTTCAAACACA+TGG | + | chr1_4:61170272-61170291 | Msa0175270:intron | 20.0% |
| !!! | ACTCTTTGAAATAATAACAA+AGG | - | chr1_4:61170708-61170727 | None:intergenic | 20.0% |
| !!! | TTTTTTGACTGTATTTAGTA+TGG | + | chr1_4:61170744-61170763 | Msa0175270:intron | 20.0% |
| !! | TTTAGTATGGAAAAGTTAAA+AGG | + | chr1_4:61170757-61170776 | Msa0175270:intron | 20.0% |
| !! | TGTATATGGTTGTTTATTTA+TGG | + | chr1_4:61171078-61171097 | Msa0175270:intron | 20.0% |
| ! | AACTCAAATGAATAAAAGGA+AGG | - | chr1_4:61169953-61169972 | None:intergenic | 25.0% |
| ! | CAGAAACTCAAATGAATAAA+AGG | - | chr1_4:61169957-61169976 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAACGGTAT+CGG | + | chr1_4:61170112-61170131 | Msa0175270:intron | 25.0% |
| !! | AAAATGAATGATGATTTGCA+AGG | + | chr1_4:61170309-61170328 | Msa0175270:intron | 25.0% |
| ! | GGAAGAAAAAAAAGAATGAT+TGG | - | chr1_4:61170413-61170432 | None:intergenic | 25.0% |
| ! | TTTGTTGCCTATTAAATTTC+CGG | + | chr1_4:61170455-61170474 | Msa0175270:intron | 25.0% |
| !!! | TTCTAACTTCTTTTGAAAAG+GGG | - | chr1_4:61170626-61170645 | None:intergenic | 25.0% |
| !!! | CTTCTAACTTCTTTTGAAAA+GGG | - | chr1_4:61170627-61170646 | None:intergenic | 25.0% |
| !! | CTTTTCAAAAGAAGTTAGAA+GGG | + | chr1_4:61170626-61170645 | Msa0175270:intron | 25.0% |
| ! | AGATACTAATTTAACATGAG+TGG | + | chr1_4:61170656-61170675 | Msa0175270:intron | 25.0% |
| ! | ACTCATTAAACTACTAACAA+AGG | - | chr1_4:61170790-61170809 | None:intergenic | 25.0% |
| !! | TGTAGTATTGAAAAGTGAAA+AGG | + | chr1_4:61170864-61170883 | Msa0175270:intron | 25.0% |
| ! | ATTGAAAAGTGAAAAGGTTA+TGG | + | chr1_4:61170870-61170889 | Msa0175270:intron | 25.0% |
| ! | TTGAAAAGTGAAAAGGTTAT+GGG | + | chr1_4:61170871-61170890 | Msa0175270:intron | 25.0% |
| ! | CTCCAATGAAATAATAACAA+AGG | - | chr1_4:61170897-61170916 | None:intergenic | 25.0% |
| ! | CATGTTAATTATTTACACTC+TGG | - | chr1_4:61171018-61171037 | None:intergenic | 25.0% |
| ! | GCAATGTTGAAATTAATTGA+AGG | + | chr1_4:61171124-61171143 | Msa0175270:CDS | 25.0% |
| ! | CATTACTACTTCATTACTAA+TGG | - | chr1_4:61171638-61171657 | None:intergenic | 25.0% |
| ! | TAATGAACTAATGAAGTTGA+GGG | + | chr1_4:61171924-61171943 | Msa0175270:CDS | 25.0% |
| !!! | TAAGTTTGTTGAACTCAAAT+GGG | - | chr1_4:61172383-61172402 | None:intergenic | 25.0% |
| !!! | ATAAGTTTGTTGAACTCAAA+TGG | - | chr1_4:61172384-61172403 | None:intergenic | 25.0% |
| ! | AAACTTATTGAAACATTCTC+AGG | + | chr1_4:61172396-61172415 | Msa0175270:CDS | 25.0% |
| ! | AACTTATTGAAACATTCTCA+GGG | + | chr1_4:61172397-61172416 | Msa0175270:CDS | 25.0% |
| ATAAAAGGAAGGAAAAGAAG+TGG | - | chr1_4:61169942-61169961 | None:intergenic | 30.0% | |
| ! | CTTTCAAACACATGGAATTT+TGG | + | chr1_4:61170280-61170299 | Msa0175270:intron | 30.0% |
| ! | AACACATGGAATTTTGGATA+TGG | + | chr1_4:61170286-61170305 | Msa0175270:intron | 30.0% |
| ! | GAATGCATTCAATGATGTTT+TGG | + | chr1_4:61170331-61170350 | Msa0175270:intron | 30.0% |
| !!! | TTCAATGATGTTTTGGTTGA+TGG | + | chr1_4:61170338-61170357 | Msa0175270:intron | 30.0% |
| GTACTATGCCTTTATTACAA+GGG | - | chr1_4:61170371-61170390 | None:intergenic | 30.0% | |
| AAAAAGAATGATTGGTGAGA+TGG | - | chr1_4:61170405-61170424 | None:intergenic | 30.0% | |
| ACACTTATATGAGTCTACTT+GGG | - | chr1_4:61170434-61170453 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTACAGAATCATG+CGG | - | chr1_4:61170483-61170502 | None:intergenic | 30.0% |
| !! | CCTTCTAACTTCTTTTGAAA+AGG | - | chr1_4:61170628-61170647 | None:intergenic | 30.0% |
| ! | CCTTTTCAAAAGAAGTTAGA+AGG | + | chr1_4:61170625-61170644 | Msa0175270:intron | 30.0% |
| !! | GGCCTTTGTTATTATTTCAT+TGG | + | chr1_4:61170892-61170911 | Msa0175270:intron | 30.0% |
| TTCCTTATGCAATTTGCATA+TGG | + | chr1_4:61170961-61170980 | Msa0175270:intron | 30.0% | |
| TACCATATGCAAATTGCATA+AGG | - | chr1_4:61170966-61170985 | None:intergenic | 30.0% | |
| AATGCTTAAATGAAGCAGAA+GGG | - | chr1_4:61171300-61171319 | None:intergenic | 30.0% | |
| TGAAGAGAAGAAGATTCATA+AGG | + | chr1_4:61171498-61171517 | Msa0175270:CDS | 30.0% | |
| TTGATGAAGTAATGAAGTTG+AGG | + | chr1_4:61171548-61171567 | Msa0175270:CDS | 30.0% | |
| TGATGAAGTAATGAAGTTGA+GGG | + | chr1_4:61171549-61171568 | Msa0175270:CDS | 30.0% | |
| ATGAAGTAGTAATGAAGTTG+AGG | + | chr1_4:61171644-61171663 | Msa0175270:CDS | 30.0% | |
| TGAAGTAGTAATGAAGTTGA+GGG | + | chr1_4:61171645-61171664 | Msa0175270:CDS | 30.0% | |
| CTTCATTACGTCATTACAAA+TGG | - | chr1_4:61171734-61171753 | None:intergenic | 30.0% | |
| TAATGACGTAATGAAGTTGA+GGG | + | chr1_4:61171738-61171757 | Msa0175270:CDS | 30.0% | |
| CTTCATTAGTTCATTACTGA+TGG | - | chr1_4:61171920-61171939 | None:intergenic | 30.0% | |
| GTAATGAACTAATGAAGTTG+AGG | + | chr1_4:61171923-61171942 | Msa0175270:CDS | 30.0% | |
| CTTCATTACTTCATTGCAAA+TGG | - | chr1_4:61172085-61172104 | None:intergenic | 30.0% | |
| GAAAGACAAAGAGAAAATAG+AGG | + | chr1_4:61172260-61172279 | Msa0175270:CDS | 30.0% | |
| !! | AAGTTTGTTGAACTCAAATG+GGG | - | chr1_4:61172382-61172401 | None:intergenic | 30.0% |
| AAGCCATGTTGATCTTCTAA+CGG | - | chr1_4:61169894-61169913 | None:intergenic | 35.0% | |
| AAACAACTAGCAATGAAGCT+CGG | - | chr1_4:61170173-61170192 | None:intergenic | 35.0% | |
| GTGTCTAACCCTTGTAATAA+AGG | + | chr1_4:61170360-61170379 | Msa0175270:intron | 35.0% | |
| GGTACTATGCCTTTATTACA+AGG | - | chr1_4:61170372-61170391 | None:intergenic | 35.0% | |
| CACACTTATATGAGTCTACT+TGG | - | chr1_4:61170435-61170454 | None:intergenic | 35.0% | |
| ! | TTTTCAGTACAGAATCATGC+GGG | - | chr1_4:61170482-61170501 | None:intergenic | 35.0% |
| TATCTCCTTCGTTTGAATTC+CGG | + | chr1_4:61170514-61170533 | Msa0175270:intron | 35.0% | |
| CATGAGTGGAAAAAGTGAAA+AGG | + | chr1_4:61170670-61170689 | Msa0175270:intron | 35.0% | |
| GCAATTTGCATATGGTATCT+AGG | + | chr1_4:61170969-61170988 | Msa0175270:intron | 35.0% | |
| GCATGGTTGAAGATTTCTAT+AGG | + | chr1_4:61171209-61171228 | Msa0175270:CDS | 35.0% | |
| ATGCTTAAATGAAGCAGAAG+GGG | - | chr1_4:61171299-61171318 | None:intergenic | 35.0% | |
| GAATGCTTAAATGAAGCAGA+AGG | - | chr1_4:61171301-61171320 | None:intergenic | 35.0% | |
| ! | TTCTGAGAATTGTGATGTAG+AGG | + | chr1_4:61171372-61171391 | Msa0175270:CDS | 35.0% |
| AAAAGAGAATGAAGCGCATA+AGG | + | chr1_4:61171591-61171610 | Msa0175270:CDS | 35.0% | |
| GAAAGTGAATAAAGCACAGA+AGG | + | chr1_4:61171687-61171706 | Msa0175270:CDS | 35.0% | |
| GTAATGACGTAATGAAGTTG+AGG | + | chr1_4:61171737-61171756 | Msa0175270:CDS | 35.0% | |
| AAGAATGAACTCAAGCAGAA+AGG | + | chr1_4:61171799-61171818 | Msa0175270:CDS | 35.0% | |
| CTTCATCACTTCGTTATTGA+CGG | - | chr1_4:61171827-61171846 | None:intergenic | 35.0% | |
| GAAAGAGAATGAAGTGCAAA+AGG | + | chr1_4:61171966-61171985 | Msa0175270:CDS | 35.0% | |
| CAATGAAGTAGTGAAGTTGA+GGG | + | chr1_4:61172017-61172036 | Msa0175270:CDS | 35.0% | |
| GAAAGAGAATGAAGCACAAA+AGG | + | chr1_4:61172131-61172150 | Msa0175270:CDS | 35.0% | |
| CATCATCACTTCATCACAAA+TGG | - | chr1_4:61172178-61172197 | None:intergenic | 35.0% | |
| ! | TGATGAAGTGATGATGTTGA+TGG | + | chr1_4:61172182-61172201 | Msa0175270:CDS | 35.0% |
| AACAATAGATATGCTGAAGC+AGG | + | chr1_4:61172302-61172321 | Msa0175270:CDS | 35.0% | |
| ATTCTCAGGGAAATTGCTTA+AGG | + | chr1_4:61172410-61172429 | Msa0175270:CDS | 35.0% | |
| TTCTCAGGGAAATTGCTTAA+GGG | + | chr1_4:61172411-61172430 | Msa0175270:CDS | 35.0% | |
| ACAATACTAGGCTTATTCCT+TGG | - | chr1_4:61172441-61172460 | None:intergenic | 35.0% | |
| TGGCTTCAATCTATACTCAC+TGG | + | chr1_4:61169908-61169927 | Msa0175270:CDS | 40.0% | |
| AGTGTAATCATGTGTCGTGT+CGG | - | chr1_4:61170078-61170097 | None:intergenic | 40.0% | |
| TGGTGAGATGGTCAATCATA+TGG | - | chr1_4:61170393-61170412 | None:intergenic | 40.0% | |
| ATACAGATACCTCTCTCAAC+CGG | - | chr1_4:61170536-61170555 | None:intergenic | 40.0% | |
| ATTTATTGTCCGATGATGCC+TGG | + | chr1_4:61170554-61170573 | Msa0175270:intron | 40.0% | |
| AGAGCTGAATGAGAAGACAA+AGG | + | chr1_4:61171102-61171121 | Msa0175270:intron | 40.0% | |
| TTGTGATGTAGAGGAATCTG+TGG | + | chr1_4:61171381-61171400 | Msa0175270:CDS | 40.0% | |
| AGTCTCTCAATTTCGCTTGT+CGG | - | chr1_4:61171475-61171494 | None:intergenic | 40.0% | |
| ACAAGCGAAATTGAGAGACT+CGG | + | chr1_4:61171475-61171494 | Msa0175270:CDS | 40.0% | |
| GTGAATAAAGCACAGAAGGA+TGG | + | chr1_4:61171691-61171710 | Msa0175270:CDS | 40.0% | |
| ATAACGAAGTGATGAAGCTG+AGG | + | chr1_4:61171830-61171849 | Msa0175270:CDS | 40.0% | |
| TAACGAAGTGATGAAGCTGA+GGG | + | chr1_4:61171831-61171850 | Msa0175270:CDS | 40.0% | |
| TGAACTAATGAAGTTGAGGG+AGG | + | chr1_4:61171927-61171946 | Msa0175270:CDS | 40.0% | |
| GCAATGAAGTAGTGAAGTTG+AGG | + | chr1_4:61172016-61172035 | Msa0175270:CDS | 40.0% | |
| GATGAGAAGCTTCATAGCTA+AGG | + | chr1_4:61172335-61172354 | Msa0175270:CDS | 40.0% | |
| CTAAGGAATCTGCCAAGAAA+TGG | + | chr1_4:61172352-61172371 | Msa0175270:CDS | 40.0% | |
| AAATGGGGTCTTCCATTTCT+TGG | - | chr1_4:61172367-61172386 | None:intergenic | 40.0% | |
| TCTCAGGGAAATTGCTTAAG+GGG | + | chr1_4:61172412-61172431 | Msa0175270:CDS | 40.0% | |
| AATTGCTTAAGGGGATTCCA+AGG | + | chr1_4:61172421-61172440 | Msa0175270:CDS | 40.0% | |
| CCATGTTGATCTTCTAACGG+TGG | - | chr1_4:61169891-61169910 | None:intergenic | 45.0% | |
| CCACCGTTAGAAGATCAACA+TGG | + | chr1_4:61169888-61169907 | Msa0175270:CDS | 45.0% | |
| AGGAAGGAAAAGAAGTGGTC+AGG | - | chr1_4:61169937-61169956 | None:intergenic | 45.0% | |
| TAGTGCTAGGCTATGAAGCA+CGG | + | chr1_4:61169994-61170013 | Msa0175270:intron | 45.0% | |
| TATGAAGCACGGTCACTTCT+CGG | + | chr1_4:61170005-61170024 | Msa0175270:intron | 45.0% | |
| ! | TTCTCGGATTAGACGTGTTC+TGG | + | chr1_4:61170021-61170040 | Msa0175270:intron | 45.0% |
| ATGAAGCTCGGATATGGACA+CGG | - | chr1_4:61170161-61170180 | None:intergenic | 45.0% | |
| CTAGCAATGAAGCTCGGATA+TGG | - | chr1_4:61170167-61170186 | None:intergenic | 45.0% | |
| TGCGGGTCCGGAAATTTAAT+AGG | - | chr1_4:61170465-61170484 | None:intergenic | 45.0% | |
| CTCAACCGGAATTCAAACGA+AGG | - | chr1_4:61170522-61170541 | None:intergenic | 45.0% | |
| GTTTGAATTCCGGTTGAGAG+AGG | + | chr1_4:61170524-61170543 | Msa0175270:intron | 45.0% | |
| CAAAGTTTCCCTCCACTAGA+GGG | - | chr1_4:61170589-61170608 | None:intergenic | 45.0% | |
| TCAAAGTTTCCCTCCACTAG+AGG | - | chr1_4:61170590-61170609 | None:intergenic | 45.0% | |
| CATCTCAGCTCTTTGTGCAA+AGG | - | chr1_4:61171161-61171180 | None:intergenic | 45.0% | |
| ! | AACACCGCTTGTTAGCTGAA+CGG | + | chr1_4:61171233-61171252 | Msa0175270:CDS | 45.0% |
| CATACCGTTCAGCTAACAAG+CGG | - | chr1_4:61171240-61171259 | None:intergenic | 45.0% | |
| CTGAACGGTATGATCAAGTC+AGG | + | chr1_4:61171248-61171267 | Msa0175270:CDS | 45.0% | |
| GCATTCTCAACCAGAGAAGT+CGG | + | chr1_4:61171315-61171334 | Msa0175270:CDS | 45.0% | |
| !! | TCAAAACTCACCGACTTCTC+TGG | - | chr1_4:61171328-61171347 | None:intergenic | 45.0% |
| ATCAACCGTCACAGTCACAC+TGG | + | chr1_4:61169846-61169865 | Msa0175270:CDS | 50.0% | |
| GACACAACACGTGTCCAACA+CGG | - | chr1_4:61170050-61170069 | None:intergenic | 50.0% | |
| AGTACAGAATCATGCGGGTC+CGG | - | chr1_4:61170477-61170496 | None:intergenic | 50.0% | |
| ATTGTCCGATGATGCCTGGA+AGG | + | chr1_4:61170558-61170577 | Msa0175270:intron | 50.0% | |
| TTGTCCGATGATGCCTGGAA+GGG | + | chr1_4:61170559-61170578 | Msa0175270:intron | 50.0% | |
| AATCCCCTTCCAGGCATCAT+CGG | - | chr1_4:61170566-61170585 | None:intergenic | 50.0% | |
| TCAACCATGCTCACAAGCTC+TGG | - | chr1_4:61171199-61171218 | None:intergenic | 50.0% | |
| GATCAAGTCAGGCCTGAATC+CGG | + | chr1_4:61171259-61171278 | Msa0175270:CDS | 50.0% | |
| TGATGATCCTGAGCACGAAG+AGG | + | chr1_4:61171414-61171433 | Msa0175270:CDS | 50.0% | |
| CGAAGAGGAGGTTCAGTTTG+TGG | + | chr1_4:61171429-61171448 | Msa0175270:CDS | 50.0% | |
| AACCGTCACAGTCACACTGG+TGG | + | chr1_4:61169849-61169868 | Msa0175270:CDS | 55.0% | |
| CACCACCAGTGTGACTGTGA+CGG | - | chr1_4:61169854-61169873 | None:intergenic | 55.0% | |
| ACGTGTTCTGGTGTCCGTGT+TGG | + | chr1_4:61170033-61170052 | Msa0175270:intron | 55.0% | |
| TGTCCGATGATGCCTGGAAG+GGG | + | chr1_4:61170560-61170579 | Msa0175270:intron | 55.0% | |
| ACTAGAGGGAATCCCCTTCC+AGG | - | chr1_4:61170575-61170594 | None:intergenic | 55.0% | |
| TGGAAGGGGATTCCCTCTAG+TGG | + | chr1_4:61170574-61170593 | Msa0175270:intron | 55.0% | |
| AAGGGGATTCCCTCTAGTGG+AGG | + | chr1_4:61170577-61170596 | Msa0175270:intron | 55.0% | |
| AGGGGATTCCCTCTAGTGGA+GGG | + | chr1_4:61170578-61170597 | Msa0175270:intron | 55.0% | |
| GAGACCAGAGCTTGTGAGCA+TGG | + | chr1_4:61171192-61171211 | Msa0175270:CDS | 55.0% | |
| AGCAGGCGAATTCCGGATTC+AGG | - | chr1_4:61171274-61171293 | None:intergenic | 55.0% | |
| ATGAAGCAGAAGGGGTGAGC+AGG | - | chr1_4:61171291-61171310 | None:intergenic | 55.0% | |
| TGATCCTGAGCACGAAGAGG+AGG | + | chr1_4:61171417-61171436 | Msa0175270:CDS | 55.0% | |
| TGAACCTCCTCTTCGTGCTC+AGG | - | chr1_4:61171424-61171443 | None:intergenic | 55.0% | |
| CGTCACAGTCACACTGGTGG+TGG | + | chr1_4:61169852-61169871 | Msa0175270:CDS | 60.0% | |
| CACGGACACCAGACACGACA+CGG | - | chr1_4:61170143-61170162 | None:intergenic | 60.0% | |
| AGGGGTGAGCAGGCGAATTC+CGG | - | chr1_4:61171281-61171300 | None:intergenic | 60.0% | |
| CGGCGTGTCCGTGTCGTGTC+TGG | + | chr1_4:61170132-61170151 | Msa0175270:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 61169794 | 61172470 | 61169794 | ID=Msa0175270;Name=Msa0175270 |
| chr1_4 | mRNA | 61169794 | 61172470 | 61169794 | ID=Msa0175270-mRNA-1;Parent=Msa0175270;Name=Msa0175270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=24|1|0.5|1|1|1|2|0|492 |
| chr1_4 | exon | 61169794 | 61169929 | 61169794 | ID=Msa0175270-mRNA-1:exon:19474;Parent=Msa0175270-mRNA-1 |
| chr1_4 | exon | 61171104 | 61172470 | 61171104 | ID=Msa0175270-mRNA-1:exon:19475;Parent=Msa0175270-mRNA-1 |
| chr1_4 | five_prime_UTR | 61169794 | 61169817 | 61169794 | ID=Msa0175270-mRNA-1:five_prime_utr;Parent=Msa0175270-mRNA-1 |
| chr1_4 | CDS | 61169818 | 61169929 | 61169818 | ID=Msa0175270-mRNA-1:cds;Parent=Msa0175270-mRNA-1 |
| chr1_4 | CDS | 61171104 | 61172470 | 61171104 | ID=Msa0175270-mRNA-1:cds;Parent=Msa0175270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
