Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346590 | XP_013469224.1 | 92.073 | 492 | 39 | 0 | 1 | 492 | 1 | 492 | 0.0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346590 | sp|Q66GR8|NET3A_ARATH | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 5.43e-40 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346590 | A0A072VN48 | 92.073 | 492 | 39 | 0 | 1 | 492 | 1 | 492 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175270 | Msa1346590 | 0.835812 | 1.349351e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346590 | MtrunA17_Chr1g0196081 | 92.073 | 492 | 39 | 0 | 1 | 492 | 1 | 492 | 0.0 | 895 |
| Msa1346590 | MtrunA17_Chr7g0268631 | 54.962 | 262 | 89 | 7 | 8 | 248 | 45 | 298 | 1.20e-78 | 249 |
| Msa1346590 | MtrunA17_Chr7g0268631 | 57.937 | 126 | 53 | 0 | 364 | 489 | 209 | 334 | 6.01e-38 | 142 |
| Msa1346590 | MtrunA17_Chr7g0268631 | 52.857 | 70 | 33 | 0 | 278 | 347 | 209 | 278 | 1.39e-11 | 65.9 |
| Msa1346590 | MtrunA17_Chr7g0268631 | 49.398 | 83 | 41 | 1 | 247 | 328 | 209 | 291 | 3.99e-11 | 64.3 |
| Msa1346590 | MtrunA17_Chr1g0204981 | 59.494 | 79 | 31 | 1 | 17 | 95 | 15 | 92 | 2.32e-25 | 110 |
| Msa1346590 | MtrunA17_Chr1g0185241 | 53.261 | 92 | 42 | 1 | 1 | 92 | 1 | 91 | 5.08e-25 | 109 |
| Msa1346590 | MtrunA17_Chr5g0432781 | 55.914 | 93 | 40 | 1 | 4 | 95 | 8 | 100 | 1.20e-24 | 107 |
| Msa1346590 | MtrunA17_Chr7g0260161 | 48.246 | 114 | 56 | 2 | 17 | 130 | 15 | 125 | 1.66e-24 | 108 |
| Msa1346590 | MtrunA17_Chr5g0394641 | 56.962 | 79 | 33 | 1 | 17 | 95 | 15 | 92 | 9.95e-24 | 105 |
| Msa1346590 | MtrunA17_Chr5g0412211 | 31.383 | 188 | 124 | 2 | 13 | 200 | 7 | 189 | 1.37e-21 | 99.0 |
| Msa1346590 | MtrunA17_Chr5g0427501 | 40.909 | 88 | 52 | 0 | 8 | 95 | 2 | 89 | 6.13e-18 | 87.4 |
| Msa1346590 | MtrunA17_Chr8g0367521 | 37.500 | 88 | 55 | 0 | 8 | 95 | 2 | 89 | 1.85e-17 | 85.9 |
| Msa1346590 | MtrunA17_Chr3g0107891 | 55.556 | 63 | 28 | 0 | 33 | 95 | 9 | 71 | 1.02e-15 | 79.7 |
| Msa1346590 | MtrunA17_Chr3g0132861 | 45.205 | 73 | 38 | 1 | 25 | 95 | 14 | 86 | 1.69e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346590 | AT1G03470.2 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 5.52e-41 | 148 |
| Msa1346590 | AT1G03470.3 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 5.52e-41 | 148 |
| Msa1346590 | AT1G03470.1 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 5.52e-41 | 148 |
| Msa1346590 | AT1G03470.4 | 42.735 | 234 | 88 | 10 | 15 | 223 | 6 | 218 | 5.52e-41 | 148 |
| Msa1346590 | AT2G47920.2 | 61.250 | 80 | 31 | 0 | 14 | 93 | 7 | 86 | 4.96e-30 | 117 |
| Msa1346590 | AT2G47920.1 | 61.250 | 80 | 31 | 0 | 14 | 93 | 7 | 86 | 4.96e-30 | 117 |
| Msa1346590 | AT3G22790.1 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 4.43e-25 | 110 |
| Msa1346590 | AT3G22790.3 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 4.43e-25 | 110 |
| Msa1346590 | AT3G22790.2 | 48.696 | 115 | 50 | 3 | 17 | 129 | 15 | 122 | 4.43e-25 | 110 |
| Msa1346590 | AT1G03080.3 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 1.11e-24 | 108 |
| Msa1346590 | AT1G03080.1 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 1.11e-24 | 108 |
| Msa1346590 | AT1G03080.2 | 45.872 | 109 | 48 | 2 | 10 | 118 | 6 | 103 | 1.11e-24 | 108 |
| Msa1346590 | AT2G30500.2 | 47.000 | 100 | 48 | 1 | 1 | 95 | 1 | 100 | 4.24e-23 | 102 |
| Msa1346590 | AT2G30500.1 | 47.000 | 100 | 48 | 1 | 1 | 95 | 1 | 100 | 4.24e-23 | 102 |
| Msa1346590 | AT5G10500.1 | 31.863 | 204 | 123 | 3 | 8 | 204 | 2 | 196 | 1.68e-22 | 101 |
| Msa1346590 | AT2G30500.3 | 48.276 | 87 | 45 | 0 | 9 | 95 | 13 | 99 | 1.73e-22 | 100 |
| Msa1346590 | AT4G14760.4 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 3.04e-22 | 101 |
| Msa1346590 | AT4G14760.2 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 3.04e-22 | 101 |
| Msa1346590 | AT4G14760.3 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 3.04e-22 | 101 |
| Msa1346590 | AT4G14760.1 | 53.165 | 79 | 35 | 1 | 17 | 95 | 15 | 91 | 3.04e-22 | 101 |
| Msa1346590 | AT4G02710.1 | 53.947 | 76 | 34 | 1 | 17 | 92 | 15 | 89 | 5.13e-22 | 100 |
| Msa1346590 | AT2G22560.1 | 31.156 | 199 | 133 | 3 | 8 | 204 | 2 | 198 | 7.01e-22 | 100 |
| Msa1346590 | AT1G09720.1 | 45.455 | 88 | 48 | 0 | 8 | 95 | 2 | 89 | 6.52e-21 | 97.1 |
| Msa1346590 | AT5G58320.5 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 1.88e-20 | 94.7 |
| Msa1346590 | AT5G58320.2 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 1.88e-20 | 94.7 |
| Msa1346590 | AT5G58320.1 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 2.33e-20 | 94.4 |
| Msa1346590 | AT5G58320.4 | 46.988 | 83 | 44 | 0 | 13 | 95 | 18 | 100 | 2.33e-20 | 94.4 |
| Msa1346590 | AT1G58215.1 | 42.353 | 85 | 49 | 0 | 8 | 92 | 2 | 86 | 2.58e-18 | 89.0 |
| Msa1346590 | AT4G03153.1 | 37.725 | 167 | 82 | 7 | 15 | 177 | 5 | 153 | 7.76e-18 | 82.8 |
| Msa1346590 | AT5G58320.3 | 52.632 | 57 | 27 | 0 | 39 | 95 | 1 | 57 | 2.65e-13 | 72.4 |
Find 79 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGGGGTCTTCCATTTCT+TGG | 0.290545 | tig0009097:-34182 | None:intergenic |
| CTTCATCACTTCATTATTGA+TGG | 0.292338 | tig0009097:-33642 | None:intergenic |
| CTTCATTATTTCATTACTAA+TGG | 0.305121 | tig0009097:-33735 | None:intergenic |
| CATCACTATTTCATTACTAA+TGG | 0.326114 | tig0009097:-33453 | None:intergenic |
| AGCAGGCGAATTCCGGATTC+AGG | 0.330739 | tig0009097:-33089 | None:intergenic |
| ATAAGTTTGTTGAACTCAAA+TGG | 0.353839 | tig0009097:-34199 | None:intergenic |
| AGGGGTGAGCAGGCGAATTC+CGG | 0.363649 | tig0009097:-33096 | None:intergenic |
| TAAGTTTGTTGAACTCAAAT+GGG | 0.375260 | tig0009097:-34198 | None:intergenic |
| ATTCTCAGGGAAATTGCTTA+AGG | 0.376008 | tig0009097:+34228 | Msa1346590:CDS |
| AAACTTATTGAAACATTCTC+AGG | 0.390309 | tig0009097:+34214 | Msa1346590:CDS |
| CTAAGGAATCTGCCAAGAAA+TGG | 0.413578 | tig0009097:+34170 | Msa1346590:CDS |
| TTCTCAGGGAAATTGCTTAA+GGG | 0.421637 | tig0009097:+34229 | Msa1346590:CDS |
| TTTCATTACTTCATTGCAAA+TGG | 0.422345 | tig0009097:-33900 | None:intergenic |
| CTTCACTACTTCATTGCAAA+TGG | 0.423645 | tig0009097:-33828 | None:intergenic |
| AGTCTCTCAATTTCGCTTGT+CGG | 0.431669 | tig0009097:-33290 | None:intergenic |
| CGAAGAGGAGGTTCAGTTTG+TGG | 0.438529 | tig0009097:+33247 | Msa1346590:CDS |
| GAAAGAGAATGAAGCACAAA+AGG | 0.439250 | tig0009097:+33949 | Msa1346590:CDS |
| TGATGAAGTGATGATGTTGA+TGG | 0.446383 | tig0009097:+34000 | Msa1346590:CDS |
| TGAACCTCCTCTTCGTGCTC+AGG | 0.452235 | tig0009097:-33239 | None:intergenic |
| AAAGTTTCAGAGAAGAGAAT+AGG | 0.452335 | tig0009097:+34032 | Msa1346590:CDS |
| GCAATGAAGTAATGAAATTG+AGG | 0.453702 | tig0009097:+33906 | Msa1346590:CDS |
| CTTCATTACGTCATTACAAA+TGG | 0.455975 | tig0009097:-33549 | None:intergenic |
| TCAACCATGCTCACAAGCTC+TGG | 0.456514 | tig0009097:-33014 | None:intergenic |
| AAAAGAGAATGAAGCGCATA+AGG | 0.456733 | tig0009097:+33409 | Msa1346590:CDS |
| CATCATCACTTCATCACAAA+TGG | 0.461968 | tig0009097:-33993 | None:intergenic |
| GAGACCAGAGCTTGTGAGCA+TGG | 0.471230 | tig0009097:+33010 | Msa1346590:CDS |
| TCAAAACTCACCGACTTCTC+TGG | 0.472455 | tig0009097:-33143 | None:intergenic |
| GCATGGTTGAAGATTTCTAT+AGG | 0.473560 | tig0009097:+33027 | Msa1346590:CDS |
| GATCAAGTCAGGCCTGAATC+CGG | 0.480759 | tig0009097:+33077 | Msa1346590:CDS |
| ATGAAATAGTGATGAAGTTG+AGG | 0.488885 | tig0009097:+33462 | Msa1346590:CDS |
| AACAATAGATATGCTGAAGC+AGG | 0.489603 | tig0009097:+34120 | Msa1346590:CDS |
| CAATGAAGTAGTGAAGTTGA+GGG | 0.493340 | tig0009097:+33835 | Msa1346590:CDS |
| ATGAAGCAGAAGGGGTGAGC+AGG | 0.496104 | tig0009097:-33106 | None:intergenic |
| ACAATACTAGGCTTATTCCT+TGG | 0.496896 | tig0009097:-34256 | None:intergenic |
| CAATGAAGTAATGAAATTGA+GGG | 0.507840 | tig0009097:+33907 | Msa1346590:CDS |
| CTGAACGGTATGATCAAGTC+AGG | 0.509244 | tig0009097:+33066 | Msa1346590:CDS |
| TGATGAAGTAATGAAGTTGA+GGG | 0.510431 | tig0009097:+33367 | Msa1346590:CDS |
| TGAAGAGAAGAAGATTCATA+AGG | 0.513957 | tig0009097:+33316 | Msa1346590:CDS |
| GCAATGTTGAAATTAATTGA+AGG | 0.516501 | tig0009097:+32942 | Msa1346590:CDS |
| TCTCAGGGAAATTGCTTAAG+GGG | 0.517388 | tig0009097:+34230 | Msa1346590:CDS |
| TTGATGAAGTAATGAAGTTG+AGG | 0.524579 | tig0009097:+33366 | Msa1346590:CDS |
| GAAAGAGAATGAAGCGCGAA+AGG | 0.526112 | tig0009097:+33784 | Msa1346590:CDS |
| GCAATGAAGTAGTGAAGTTG+AGG | 0.527855 | tig0009097:+33834 | Msa1346590:CDS |
| GAAAGACAAAGAGAAAATAG+AGG | 0.538013 | tig0009097:+34078 | Msa1346590:CDS |
| ATAATGAAGTGATGAAGTTG+AGG | 0.539298 | tig0009097:+33648 | Msa1346590:CDS |
| TAATGAAGTGATGAAGTTGA+GGG | 0.539914 | tig0009097:+33649 | Msa1346590:CDS |
| CATCTCAGCTCTTTGTGCAA+AGG | 0.544599 | tig0009097:-32976 | None:intergenic |
| TGGCTTCAATCTACACTCAC+TGG | 0.549292 | tig0009097:+31751 | Msa1346590:CDS |
| TAATGACGTAATGAAGTTGA+GGG | 0.552405 | tig0009097:+33556 | Msa1346590:CDS |
| AATTGCTTAAGGGGATTCCA+AGG | 0.560172 | tig0009097:+34239 | Msa1346590:CDS |
| TTCTGAGAATTGTGATGTAG+AGG | 0.561390 | tig0009097:+33190 | Msa1346590:CDS |
| GTAATGACGTAATGAAGTTG+AGG | 0.563801 | tig0009097:+33555 | Msa1346590:CDS |
| CGTCACAGTCACACTGGTGG+TGG | 0.568587 | tig0009097:+31695 | Msa1346590:CDS |
| GATGAGAAGCTACATAGCTA+AGG | 0.575841 | tig0009097:+34153 | Msa1346590:CDS |
| TGAAATAGTGATGAAGTTGA+GGG | 0.578261 | tig0009097:+33463 | Msa1346590:CDS |
| GTAATGAAATAATGAAGCTG+AGG | 0.579538 | tig0009097:+33741 | Msa1346590:CDS |
| AAGAATGAACTCAAGCAGAA+AGG | 0.580989 | tig0009097:+33617 | Msa1346590:CDS |
| GAATGCTTAAATGAAGCAGA+AGG | 0.588387 | tig0009097:-33116 | None:intergenic |
| TGAAATAATGAAGCTGAGGG+AGG | 0.596541 | tig0009097:+33745 | Msa1346590:CDS |
| GCATTCTCAACCAGAGAAGT+CGG | 0.609142 | tig0009097:+33133 | Msa1346590:CDS |
| AAGCCATGTTGATCTTCTAA+CGG | 0.609448 | tig0009097:-31734 | None:intergenic |
| TAATGAAATAATGAAGCTGA+GGG | 0.617996 | tig0009097:+33742 | Msa1346590:CDS |
| AACTTATTGAAACATTCTCA+GGG | 0.622302 | tig0009097:+34215 | Msa1346590:CDS |
| ATCAACCGTCACAGTCACAC+TGG | 0.631274 | tig0009097:+31689 | Msa1346590:CDS |
| AATGCTTAAATGAAGCAGAA+GGG | 0.631992 | tig0009097:-33115 | None:intergenic |
| ATGCTTAAATGAAGCAGAAG+GGG | 0.634860 | tig0009097:-33114 | None:intergenic |
| TTGTGATGTAGAGGAATCTG+TGG | 0.636948 | tig0009097:+33199 | Msa1346590:CDS |
| TGATCCTGAGCACGAAGAGG+AGG | 0.641241 | tig0009097:+33235 | Msa1346590:CDS |
| AAGTTTGTTGAACTCAAATG+GGG | 0.655479 | tig0009097:-34197 | None:intergenic |
| ATGTAAGTAAAGAAACAGCA+AGG | 0.660807 | tig0009097:+31629 | None:intergenic |
| TGATGATCCTGAGCACGAAG+AGG | 0.664746 | tig0009097:+33232 | Msa1346590:CDS |
| ACAAGCGAAATTGAGAGACT+CGG | 0.669248 | tig0009097:+33293 | Msa1346590:CDS |
| AACCGTCACAGTCACACTGG+TGG | 0.670502 | tig0009097:+31692 | Msa1346590:CDS |
| AACACCGCTTGTTAGCTGAA+CGG | 0.678597 | tig0009097:+33051 | Msa1346590:CDS |
| CCATGTTGATCTTCTAACGG+TGG | 0.679481 | tig0009097:-31731 | None:intergenic |
| AGAGCTGAATGAGAAGACAA+AGG | 0.680186 | tig0009097:+32920 | Msa1346590:intron |
| CATACCGTTCAGCTAACAAG+CGG | 0.687994 | tig0009097:-33055 | None:intergenic |
| CACCACCAGTGTGACTGTGA+CGG | 0.706302 | tig0009097:-31694 | None:intergenic |
| CCACCGTTAGAAGATCAACA+TGG | 0.710207 | tig0009097:+31731 | Msa1346590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTAATTAGTGCT+AGG | + | tig0009097:31824-31843 | Msa1346590:intron | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+CGG | + | tig0009097:31943-31962 | Msa1346590:intron | 15.0% |
| !! | ATACTACAAATTATATTACT+CGG | - | tig0009097:32670-32689 | None:intergenic | 15.0% |
| !! | GAAATTAAGTAATATGTATA+TGG | + | tig0009097:32882-32901 | Msa1346590:intron | 15.0% |
| !!! | TTAGTTTTTGATGAAGAATT+AGG | + | tig0009097:32011-32030 | Msa1346590:intron | 20.0% |
| !!! | ACTCTTTGAAATAATAACAA+AGG | - | tig0009097:32526-32545 | None:intergenic | 20.0% |
| !!! | TTTTTTGACTGTATTTAGTA+TGG | + | tig0009097:32562-32581 | Msa1346590:intron | 20.0% |
| !! | TTTAGTATGGAAAAGTTAAA+AGG | + | tig0009097:32575-32594 | Msa1346590:intron | 20.0% |
| !! | TGTATATGGTTGTTTATTTA+TGG | + | tig0009097:32896-32915 | Msa1346590:intron | 20.0% |
| !! | CTTCATTATTTCATTACTAA+TGG | - | tig0009097:33738-33757 | None:intergenic | 20.0% |
| ! | AACTCAAATGAATAAAAGGA+AGG | - | tig0009097:31796-31815 | None:intergenic | 25.0% |
| ! | CAGAAACTCAAATGAATAAA+AGG | - | tig0009097:31800-31819 | None:intergenic | 25.0% |
| ! | TCTCAAATTATTAACGGTAT+CGG | + | tig0009097:31949-31968 | Msa1346590:intron | 25.0% |
| !!! | GTTTTTTTCTTTCAAACACA+TGG | + | tig0009097:32090-32109 | Msa1346590:intron | 25.0% |
| !! | AAAATGAATGATGATTTGCA+AGG | + | tig0009097:32127-32146 | Msa1346590:intron | 25.0% |
| ! | GGAAGAAAAAAAAGAATGAT+TGG | - | tig0009097:32231-32250 | None:intergenic | 25.0% |
| ! | TTTGTTGCCTATTAAATTTC+CGG | + | tig0009097:32273-32292 | Msa1346590:intron | 25.0% |
| !!! | TTCTAACTTCTTTTGAAAAG+GGG | - | tig0009097:32444-32463 | None:intergenic | 25.0% |
| !!! | CTTCTAACTTCTTTTGAAAA+GGG | - | tig0009097:32445-32464 | None:intergenic | 25.0% |
| !! | CTTTTCAAAAGAAGTTAGAA+GGG | + | tig0009097:32444-32463 | Msa1346590:intron | 25.0% |
| ! | AGATACTAATTTAACATGAG+TGG | + | tig0009097:32474-32493 | Msa1346590:intron | 25.0% |
| ! | ACTCATTAAACTACTAACAA+AGG | - | tig0009097:32608-32627 | None:intergenic | 25.0% |
| !! | TGTAGTATTGAAAAGTGAAA+AGG | + | tig0009097:32682-32701 | Msa1346590:intron | 25.0% |
| ! | ATTGAAAAGTGAAAAGGTTA+TGG | + | tig0009097:32688-32707 | Msa1346590:intron | 25.0% |
| ! | TTGAAAAGTGAAAAGGTTAT+GGG | + | tig0009097:32689-32708 | Msa1346590:intron | 25.0% |
| ! | CTCCAATGAAATAATAACAA+AGG | - | tig0009097:32715-32734 | None:intergenic | 25.0% |
| ! | CATGTTAATTATTTACACTC+TGG | - | tig0009097:32836-32855 | None:intergenic | 25.0% |
| ! | GCAATGTTGAAATTAATTGA+AGG | + | tig0009097:32942-32961 | Msa1346590:CDS | 25.0% |
| ! | CATCACTATTTCATTACTAA+TGG | - | tig0009097:33456-33475 | None:intergenic | 25.0% |
| ! | TAATGAAATAATGAAGCTGA+GGG | + | tig0009097:33742-33761 | Msa1346590:CDS | 25.0% |
| ! | TTTCATTACTTCATTGCAAA+TGG | - | tig0009097:33903-33922 | None:intergenic | 25.0% |
| ! | CAATGAAGTAATGAAATTGA+GGG | + | tig0009097:33907-33926 | Msa1346590:CDS | 25.0% |
| !!! | TAAGTTTGTTGAACTCAAAT+GGG | - | tig0009097:34201-34220 | None:intergenic | 25.0% |
| !!! | ATAAGTTTGTTGAACTCAAA+TGG | - | tig0009097:34202-34221 | None:intergenic | 25.0% |
| ! | AAACTTATTGAAACATTCTC+AGG | + | tig0009097:34214-34233 | Msa1346590:CDS | 25.0% |
| ! | AACTTATTGAAACATTCTCA+GGG | + | tig0009097:34215-34234 | Msa1346590:CDS | 25.0% |
| ATAAAAGGAAGGAAAAGAAG+TGG | - | tig0009097:31785-31804 | None:intergenic | 30.0% | |
| ! | CTTTCAAACACATGGAATTT+TGG | + | tig0009097:32098-32117 | Msa1346590:intron | 30.0% |
| ! | AACACATGGAATTTTGGATA+TGG | + | tig0009097:32104-32123 | Msa1346590:intron | 30.0% |
| ! | GAATGCATTCAATGATGTTT+TGG | + | tig0009097:32149-32168 | Msa1346590:intron | 30.0% |
| !!! | TTCAATGATGTTTTGGTTGA+TGG | + | tig0009097:32156-32175 | Msa1346590:intron | 30.0% |
| GTACTATGCCTTTATTACAA+GGG | - | tig0009097:32189-32208 | None:intergenic | 30.0% | |
| AAAAAGAATGATTGGTGAGA+TGG | - | tig0009097:32223-32242 | None:intergenic | 30.0% | |
| ACACTTATATGAGTCTACTT+GGG | - | tig0009097:32252-32271 | None:intergenic | 30.0% | |
| !! | TTTTTCAGTACAGAATCATG+CGG | - | tig0009097:32301-32320 | None:intergenic | 30.0% |
| !! | CCTTCTAACTTCTTTTGAAA+AGG | - | tig0009097:32446-32465 | None:intergenic | 30.0% |
| ! | CCTTTTCAAAAGAAGTTAGA+AGG | + | tig0009097:32443-32462 | Msa1346590:intron | 30.0% |
| !! | GGCCTTTGTTATTATTTCAT+TGG | + | tig0009097:32710-32729 | Msa1346590:intron | 30.0% |
| TTCCTTATGCAATTTGCATA+TGG | + | tig0009097:32779-32798 | Msa1346590:intron | 30.0% | |
| TACCATATGCAAATTGCATA+AGG | - | tig0009097:32784-32803 | None:intergenic | 30.0% | |
| AATGCTTAAATGAAGCAGAA+GGG | - | tig0009097:33118-33137 | None:intergenic | 30.0% | |
| TGAAGAGAAGAAGATTCATA+AGG | + | tig0009097:33316-33335 | Msa1346590:CDS | 30.0% | |
| TTGATGAAGTAATGAAGTTG+AGG | + | tig0009097:33366-33385 | Msa1346590:CDS | 30.0% | |
| TGATGAAGTAATGAAGTTGA+GGG | + | tig0009097:33367-33386 | Msa1346590:CDS | 30.0% | |
| ATGAAATAGTGATGAAGTTG+AGG | + | tig0009097:33462-33481 | Msa1346590:CDS | 30.0% | |
| TGAAATAGTGATGAAGTTGA+GGG | + | tig0009097:33463-33482 | Msa1346590:CDS | 30.0% | |
| CTTCATTACGTCATTACAAA+TGG | - | tig0009097:33552-33571 | None:intergenic | 30.0% | |
| TAATGACGTAATGAAGTTGA+GGG | + | tig0009097:33556-33575 | Msa1346590:CDS | 30.0% | |
| CTTCATCACTTCATTATTGA+TGG | - | tig0009097:33645-33664 | None:intergenic | 30.0% | |
| ATAATGAAGTGATGAAGTTG+AGG | + | tig0009097:33648-33667 | Msa1346590:CDS | 30.0% | |
| TAATGAAGTGATGAAGTTGA+GGG | + | tig0009097:33649-33668 | Msa1346590:CDS | 30.0% | |
| GTAATGAAATAATGAAGCTG+AGG | + | tig0009097:33741-33760 | Msa1346590:CDS | 30.0% | |
| GCAATGAAGTAATGAAATTG+AGG | + | tig0009097:33906-33925 | Msa1346590:CDS | 30.0% | |
| AAAGTTTCAGAGAAGAGAAT+AGG | + | tig0009097:34032-34051 | Msa1346590:CDS | 30.0% | |
| GAAAGACAAAGAGAAAATAG+AGG | + | tig0009097:34078-34097 | Msa1346590:CDS | 30.0% | |
| !! | AAGTTTGTTGAACTCAAATG+GGG | - | tig0009097:34200-34219 | None:intergenic | 30.0% |
| AAGCCATGTTGATCTTCTAA+CGG | - | tig0009097:31737-31756 | None:intergenic | 35.0% | |
| AAACAACTAGCAATGAAGCT+CGG | - | tig0009097:31992-32011 | None:intergenic | 35.0% | |
| GTGTCTAACCCTTGTAATAA+AGG | + | tig0009097:32178-32197 | Msa1346590:intron | 35.0% | |
| GGTACTATGCCTTTATTACA+AGG | - | tig0009097:32190-32209 | None:intergenic | 35.0% | |
| CACACTTATATGAGTCTACT+TGG | - | tig0009097:32253-32272 | None:intergenic | 35.0% | |
| ! | TTTTCAGTACAGAATCATGC+GGG | - | tig0009097:32300-32319 | None:intergenic | 35.0% |
| TATCTCCTTCGTTTGAATTC+CGG | + | tig0009097:32332-32351 | Msa1346590:intron | 35.0% | |
| CATGAGTGGAAAAAGTGAAA+AGG | + | tig0009097:32488-32507 | Msa1346590:intron | 35.0% | |
| GCAATTTGCATATGGTATCT+AGG | + | tig0009097:32787-32806 | Msa1346590:intron | 35.0% | |
| GCATGGTTGAAGATTTCTAT+AGG | + | tig0009097:33027-33046 | Msa1346590:CDS | 35.0% | |
| ATGCTTAAATGAAGCAGAAG+GGG | - | tig0009097:33117-33136 | None:intergenic | 35.0% | |
| GAATGCTTAAATGAAGCAGA+AGG | - | tig0009097:33119-33138 | None:intergenic | 35.0% | |
| ! | TTCTGAGAATTGTGATGTAG+AGG | + | tig0009097:33190-33209 | Msa1346590:CDS | 35.0% |
| AAAAGAGAATGAAGCGCATA+AGG | + | tig0009097:33409-33428 | Msa1346590:CDS | 35.0% | |
| ! | GAAAGTGAAAAAAGCACAGA+AGG | + | tig0009097:33505-33524 | Msa1346590:CDS | 35.0% |
| GTAATGACGTAATGAAGTTG+AGG | + | tig0009097:33555-33574 | Msa1346590:CDS | 35.0% | |
| AAGAATGAACTCAAGCAGAA+AGG | + | tig0009097:33617-33636 | Msa1346590:CDS | 35.0% | |
| CTTCACTACTTCATTGCAAA+TGG | - | tig0009097:33831-33850 | None:intergenic | 35.0% | |
| CAATGAAGTAGTGAAGTTGA+GGG | + | tig0009097:33835-33854 | Msa1346590:CDS | 35.0% | |
| GAAAGAGAATGAAGCACAAA+AGG | + | tig0009097:33949-33968 | Msa1346590:CDS | 35.0% | |
| CATCATCACTTCATCACAAA+TGG | - | tig0009097:33996-34015 | None:intergenic | 35.0% | |
| ! | TGATGAAGTGATGATGTTGA+TGG | + | tig0009097:34000-34019 | Msa1346590:CDS | 35.0% |
| AACAATAGATATGCTGAAGC+AGG | + | tig0009097:34120-34139 | Msa1346590:CDS | 35.0% | |
| ATTCTCAGGGAAATTGCTTA+AGG | + | tig0009097:34228-34247 | Msa1346590:CDS | 35.0% | |
| TTCTCAGGGAAATTGCTTAA+GGG | + | tig0009097:34229-34248 | Msa1346590:CDS | 35.0% | |
| ACAATACTAGGCTTATTCCT+TGG | - | tig0009097:34259-34278 | None:intergenic | 35.0% | |
| AGTGTAATCATGTGTCGTGT+CGG | - | tig0009097:31915-31934 | None:intergenic | 40.0% | |
| TGGTGAGATGGTCAATCATA+TGG | - | tig0009097:32211-32230 | None:intergenic | 40.0% | |
| ATACAGATACCTCTCTCAAC+CGG | - | tig0009097:32354-32373 | None:intergenic | 40.0% | |
| ATTTATTGTCCGATGATGCC+TGG | + | tig0009097:32372-32391 | Msa1346590:intron | 40.0% | |
| AGAGCTGAATGAGAAGACAA+AGG | + | tig0009097:32920-32939 | Msa1346590:intron | 40.0% | |
| TTGTGATGTAGAGGAATCTG+TGG | + | tig0009097:33199-33218 | Msa1346590:CDS | 40.0% | |
| AGTCTCTCAATTTCGCTTGT+CGG | - | tig0009097:33293-33312 | None:intergenic | 40.0% | |
| ACAAGCGAAATTGAGAGACT+CGG | + | tig0009097:33293-33312 | Msa1346590:CDS | 40.0% | |
| ! | GTGAAAAAAGCACAGAAGGA+TGG | + | tig0009097:33509-33528 | Msa1346590:CDS | 40.0% |
| TGAAATAATGAAGCTGAGGG+AGG | + | tig0009097:33745-33764 | Msa1346590:CDS | 40.0% | |
| GCAATGAAGTAGTGAAGTTG+AGG | + | tig0009097:33834-33853 | Msa1346590:CDS | 40.0% | |
| GATGAGAAGCTACATAGCTA+AGG | + | tig0009097:34153-34172 | Msa1346590:CDS | 40.0% | |
| CTAAGGAATCTGCCAAGAAA+TGG | + | tig0009097:34170-34189 | Msa1346590:CDS | 40.0% | |
| AAATGGGGTCTTCCATTTCT+TGG | - | tig0009097:34185-34204 | None:intergenic | 40.0% | |
| TCTCAGGGAAATTGCTTAAG+GGG | + | tig0009097:34230-34249 | Msa1346590:CDS | 40.0% | |
| AATTGCTTAAGGGGATTCCA+AGG | + | tig0009097:34239-34258 | Msa1346590:CDS | 40.0% | |
| CCATGTTGATCTTCTAACGG+TGG | - | tig0009097:31734-31753 | None:intergenic | 45.0% | |
| CCACCGTTAGAAGATCAACA+TGG | + | tig0009097:31731-31750 | Msa1346590:CDS | 45.0% | |
| TGGCTTCAATCTACACTCAC+TGG | + | tig0009097:31751-31770 | Msa1346590:CDS | 45.0% | |
| AGGAAGGAAAAGAAGTGGTC+AGG | - | tig0009097:31780-31799 | None:intergenic | 45.0% | |
| TAGTGCTAGGCTATGAAGCA+CGG | + | tig0009097:31837-31856 | Msa1346590:intron | 45.0% | |
| TATGAAGCACGGTCACTTCT+CGG | + | tig0009097:31848-31867 | Msa1346590:intron | 45.0% | |
| ! | TTCTCGGATTAGACGTGTTC+TGG | + | tig0009097:31864-31883 | Msa1346590:intron | 45.0% |
| GATTAGACGTGTTCTGGTGT+TGG | + | tig0009097:31870-31889 | Msa1346590:intron | 45.0% | |
| ATGAAGCTCGGATATGGACA+CGG | - | tig0009097:31980-31999 | None:intergenic | 45.0% | |
| CTAGCAATGAAGCTCGGATA+TGG | - | tig0009097:31986-32005 | None:intergenic | 45.0% | |
| TGCGGGTCCGGAAATTTAAT+AGG | - | tig0009097:32283-32302 | None:intergenic | 45.0% | |
| CTCAACCGGAATTCAAACGA+AGG | - | tig0009097:32340-32359 | None:intergenic | 45.0% | |
| GTTTGAATTCCGGTTGAGAG+AGG | + | tig0009097:32342-32361 | Msa1346590:intron | 45.0% | |
| CAAAGTTTCCCTCCACTAGA+GGG | - | tig0009097:32407-32426 | None:intergenic | 45.0% | |
| TCAAAGTTTCCCTCCACTAG+AGG | - | tig0009097:32408-32427 | None:intergenic | 45.0% | |
| CATCTCAGCTCTTTGTGCAA+AGG | - | tig0009097:32979-32998 | None:intergenic | 45.0% | |
| ! | AACACCGCTTGTTAGCTGAA+CGG | + | tig0009097:33051-33070 | Msa1346590:CDS | 45.0% |
| CATACCGTTCAGCTAACAAG+CGG | - | tig0009097:33058-33077 | None:intergenic | 45.0% | |
| CTGAACGGTATGATCAAGTC+AGG | + | tig0009097:33066-33085 | Msa1346590:CDS | 45.0% | |
| GCATTCTCAACCAGAGAAGT+CGG | + | tig0009097:33133-33152 | Msa1346590:CDS | 45.0% | |
| !! | TCAAAACTCACCGACTTCTC+TGG | - | tig0009097:33146-33165 | None:intergenic | 45.0% |
| GAAAGAGAATGAAGCGCGAA+AGG | + | tig0009097:33784-33803 | Msa1346590:CDS | 45.0% | |
| ATCAACCGTCACAGTCACAC+TGG | + | tig0009097:31689-31708 | Msa1346590:CDS | 50.0% | |
| AGTACAGAATCATGCGGGTC+CGG | - | tig0009097:32295-32314 | None:intergenic | 50.0% | |
| ATTGTCCGATGATGCCTGGA+AGG | + | tig0009097:32376-32395 | Msa1346590:intron | 50.0% | |
| TTGTCCGATGATGCCTGGAA+GGG | + | tig0009097:32377-32396 | Msa1346590:intron | 50.0% | |
| AATCCCCTTCCAGGCATCAT+CGG | - | tig0009097:32384-32403 | None:intergenic | 50.0% | |
| TCAACCATGCTCACAAGCTC+TGG | - | tig0009097:33017-33036 | None:intergenic | 50.0% | |
| GATCAAGTCAGGCCTGAATC+CGG | + | tig0009097:33077-33096 | Msa1346590:CDS | 50.0% | |
| TGATGATCCTGAGCACGAAG+AGG | + | tig0009097:33232-33251 | Msa1346590:CDS | 50.0% | |
| CGAAGAGGAGGTTCAGTTTG+TGG | + | tig0009097:33247-33266 | Msa1346590:CDS | 50.0% | |
| AACCGTCACAGTCACACTGG+TGG | + | tig0009097:31692-31711 | Msa1346590:CDS | 55.0% | |
| CACCACCAGTGTGACTGTGA+CGG | - | tig0009097:31697-31716 | None:intergenic | 55.0% | |
| TGTCCGATGATGCCTGGAAG+GGG | + | tig0009097:32378-32397 | Msa1346590:intron | 55.0% | |
| ACTAGAGGGAATCCCCTTCC+AGG | - | tig0009097:32393-32412 | None:intergenic | 55.0% | |
| TGGAAGGGGATTCCCTCTAG+TGG | + | tig0009097:32392-32411 | Msa1346590:intron | 55.0% | |
| AAGGGGATTCCCTCTAGTGG+AGG | + | tig0009097:32395-32414 | Msa1346590:intron | 55.0% | |
| AGGGGATTCCCTCTAGTGGA+GGG | + | tig0009097:32396-32415 | Msa1346590:intron | 55.0% | |
| GAGACCAGAGCTTGTGAGCA+TGG | + | tig0009097:33010-33029 | Msa1346590:CDS | 55.0% | |
| AGCAGGCGAATTCCGGATTC+AGG | - | tig0009097:33092-33111 | None:intergenic | 55.0% | |
| ATGAAGCAGAAGGGGTGAGC+AGG | - | tig0009097:33109-33128 | None:intergenic | 55.0% | |
| TGATCCTGAGCACGAAGAGG+AGG | + | tig0009097:33235-33254 | Msa1346590:CDS | 55.0% | |
| TGAACCTCCTCTTCGTGCTC+AGG | - | tig0009097:33242-33261 | None:intergenic | 55.0% | |
| CGTCACAGTCACACTGGTGG+TGG | + | tig0009097:31695-31714 | Msa1346590:CDS | 60.0% | |
| AGGGGTGAGCAGGCGAATTC+CGG | - | tig0009097:33099-33118 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0009097 | gene | 31637 | 34288 | 31637 | ID=Msa1346590;Name=Msa1346590 |
| tig0009097 | mRNA | 31637 | 34288 | 31637 | ID=Msa1346590-mRNA-1;Parent=Msa1346590;Name=Msa1346590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=24|1|0.5|1|1|1|2|0|492 |
| tig0009097 | exon | 31637 | 31772 | 31637 | ID=Msa1346590-mRNA-1:exon:5552;Parent=Msa1346590-mRNA-1 |
| tig0009097 | exon | 32922 | 34288 | 32922 | ID=Msa1346590-mRNA-1:exon:5553;Parent=Msa1346590-mRNA-1 |
| tig0009097 | five_prime_UTR | 31637 | 31660 | 31637 | ID=Msa1346590-mRNA-1:five_prime_utr;Parent=Msa1346590-mRNA-1 |
| tig0009097 | CDS | 31661 | 31772 | 31661 | ID=Msa1346590-mRNA-1:cds;Parent=Msa1346590-mRNA-1 |
| tig0009097 | CDS | 32922 | 34288 | 32922 | ID=Msa1346590-mRNA-1:cds;Parent=Msa1346590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
