AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0177060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177060 MtrunA17_Chr1g0199731 100.000 287 0 0 1 287 1 287 0.0 578
Msa0177060 MtrunA17_Chr4g0029071 83.803 284 46 0 1 284 1 284 1.18e-177 491
Msa0177060 MtrunA17_Chr7g0264111 81.185 287 54 0 1 287 1 287 7.06e-173 479
Msa0177060 MtrunA17_Chr2g0326621 77.972 286 61 2 1 284 1 286 8.84e-167 463
Msa0177060 MtrunA17_Chr3g0145671 79.705 271 49 1 16 286 14 278 7.09e-155 433
Msa0177060 MtrunA17_Chr4g0006001 72.374 257 65 1 16 272 33 283 1.48e-136 387
Msa0177060 MtrunA17_Chr8g0386961 71.923 260 66 2 14 272 27 280 9.37e-136 385
Msa0177060 MtrunA17_Chr5g0436701 71.910 267 68 3 7 272 23 283 2.78e-135 384
Msa0177060 MtrunA17_Chr5g0397391 70.943 265 70 2 14 277 27 285 1.11e-134 382
Msa0177060 MtrunA17_Chr3g0113211 69.373 271 76 2 3 272 19 283 3.00e-134 381
Msa0177060 MtrunA17_Chr2g0331261 37.553 237 124 6 39 270 20 237 3.47e-35 127
Msa0177060 MtrunA17_Chr1g0188771 36.402 239 124 7 39 270 21 238 5.08e-35 127
Msa0177060 MtrunA17_Chr1g0212671 38.525 244 134 7 30 272 12 240 1.72e-33 122
Msa0177060 MtrunA17_Chr8g0340161 37.083 240 113 6 39 266 19 232 1.15e-32 120
Msa0177060 MtrunA17_Chr7g0264961 34.711 242 141 5 30 270 12 237 5.97e-32 119
Msa0177060 MtrunA17_Chr4g0030861 37.344 241 126 7 44 278 26 247 1.36e-31 117
Msa0177060 MtrunA17_Chr1g0146161 35.600 250 129 9 30 271 10 235 3.86e-31 116
Msa0177060 MtrunA17_Chr6g0478191 37.179 234 129 6 39 270 21 238 1.01e-30 115
Msa0177060 MtrunA17_Chr5g0399341 37.118 229 127 5 39 266 19 231 4.71e-30 113
Msa0177060 MtrunA17_Chr1g0146171 34.263 251 130 9 30 271 10 234 8.65e-30 113
Msa0177060 MtrunA17_Chr7g0222791 37.339 233 130 6 39 270 21 238 3.74e-29 111
Msa0177060 MtrunA17_Chr8g0379901 27.536 276 165 7 1 269 1 248 3.31e-20 87.8
Msa0177060 MtrunA17_Chr2g0284631 29.487 234 138 6 39 269 91 300 1.34e-19 87.0
Msa0177060 MtrunA17_Chr5g0435051 29.694 229 143 5 41 269 38 248 1.45e-18 83.2
Msa0177060 MtrunA17_Chr5g0426131 29.897 194 123 4 78 269 65 247 2.14e-18 82.8
Msa0177060 MtrunA17_Chr3g0079421 30.846 201 119 5 76 272 53 237 2.52e-18 82.4
Msa0177060 MtrunA17_Chr2g0284611 27.660 235 145 6 37 269 36 247 8.21e-17 78.6
Msa0177060 MtrunA17_Chr4g0020781 32.973 185 97 4 94 270 30 195 1.47e-16 76.6
Msa0177060 MtrunA17_Chr4g0038591 31.694 183 109 8 92 261 95 274 1.67e-16 78.2
Msa0177060 MtrunA17_Chr8g0379911 25.969 258 160 6 15 269 18 247 2.34e-16 77.0
Msa0177060 MtrunA17_Chr2g0284591 27.542 236 144 6 37 269 34 245 3.96e-16 76.6
Msa0177060 MtrunA17_Chr4g0044201 27.234 235 131 6 39 269 35 233 4.17e-15 73.6
Msa0177060 MtrunA17_Chr4g0038611 29.121 182 115 6 92 261 32 211 6.11e-15 73.2
Msa0177060 MtrunA17_Chr2g0284601 30.208 192 114 5 82 269 24 199 6.46e-15 72.4
Msa0177060 MtrunA17_Chr2g0284581 28.796 191 118 4 82 269 72 247 1.32e-14 72.4
Msa0177060 MtrunA17_Chr2g0333771 28.111 217 134 6 43 259 84 278 2.94e-14 71.6
Msa0177060 MtrunA17_Chr7g0217331 26.693 251 154 6 37 283 35 259 9.64e-14 69.7
Msa0177060 MtrunA17_Chr4g0001221 25.185 270 161 8 21 282 68 304 1.86e-13 69.3
Msa0177060 MtrunA17_Chr1g0184541 26.050 238 146 7 36 269 59 270 1.01e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0177060 AT2G37170.2 83.275 287 46 1 1 287 44 328 1.77e-178 495
Msa0177060 AT2G37170.1 83.275 287 46 1 1 287 1 285 9.20e-178 491
Msa0177060 AT3G53420.1 82.230 287 51 0 1 287 1 287 7.27e-176 487
Msa0177060 AT3G53420.2 82.230 287 51 0 1 287 1 287 7.27e-176 487
Msa0177060 AT2G37180.1 82.230 287 49 1 1 287 1 285 8.79e-175 484
Msa0177060 AT3G54820.1 82.230 287 50 1 1 287 1 286 5.21e-174 482
Msa0177060 AT2G39010.1 78.521 284 60 1 1 284 1 283 1.71e-167 466
Msa0177060 AT5G60660.1 79.859 283 57 0 1 283 1 283 2.29e-167 466
Msa0177060 AT2G16850.1 79.715 281 50 2 6 286 4 277 2.12e-159 445
Msa0177060 AT4G35100.1 77.305 282 57 2 6 286 4 279 1.02e-155 436
Msa0177060 AT4G35100.2 77.305 282 57 2 6 286 4 279 1.02e-155 436
Msa0177060 AT4G00430.1 74.131 259 61 1 14 272 28 280 4.97e-140 396
Msa0177060 AT2G45960.1 72.587 259 65 1 14 272 27 279 2.34e-136 387
Msa0177060 AT4G23400.1 74.517 259 60 1 14 272 28 280 1.65e-131 375
Msa0177060 AT1G01620.1 73.745 259 62 1 14 272 27 279 3.01e-131 374
Msa0177060 AT3G61430.2 72.587 259 65 1 14 272 27 279 6.99e-129 368
Msa0177060 AT3G61430.1 72.587 259 65 1 14 272 27 279 6.99e-129 368
Msa0177060 AT2G45960.2 72.766 235 58 1 14 248 27 255 1.10e-121 349
Msa0177060 AT2G45960.3 72.766 235 58 1 14 248 27 255 1.02e-120 348
Msa0177060 AT1G01620.2 77.073 205 47 0 68 272 3 207 1.29e-113 327
Msa0177060 AT2G39010.2 76.733 202 46 1 1 202 1 201 3.47e-112 323
Msa0177060 AT4G00430.2 70.466 193 51 1 14 206 28 214 8.17e-92 271
Msa0177060 AT3G26520.1 38.618 246 127 8 30 270 13 239 3.47e-35 127
Msa0177060 AT3G16240.1 39.574 235 114 7 39 266 19 232 2.88e-33 122
Msa0177060 AT1G73190.1 36.842 247 137 7 29 270 14 246 6.04e-33 122
Msa0177060 AT2G36830.1 37.860 243 127 9 30 267 12 235 9.04e-33 121
Msa0177060 AT5G47450.1 38.559 236 121 7 36 266 16 232 1.83e-32 120
Msa0177060 AT1G17810.1 35.743 249 137 7 29 270 14 246 5.37e-32 119
Msa0177060 AT4G01470.1 35.918 245 133 6 31 270 13 238 2.96e-31 117
Msa0177060 AT2G25810.1 34.298 242 139 6 30 270 10 232 2.13e-29 112
Msa0177060 AT4G17340.1 35.573 253 132 8 39 286 19 245 3.02e-28 109
Msa0177060 AT3G47440.1 33.191 235 136 7 39 270 23 239 7.35e-25 100
Msa0177060 AT4G19030.1 28.016 257 165 5 16 269 32 271 1.23e-19 87.0
Msa0177060 AT5G37820.1 28.326 233 142 7 39 269 43 252 6.29e-16 76.6
Msa0177060 AT5G37820.2 28.326 233 142 7 39 269 79 288 7.30e-16 76.6
Msa0177060 AT4G18910.1 26.800 250 161 6 25 269 36 268 1.16e-14 73.2
Msa0177060 AT1G80760.1 27.632 228 143 6 36 263 77 282 1.32e-14 73.2
Msa0177060 AT2G34390.1 27.007 274 163 8 3 269 20 263 1.32e-14 72.8
Msa0177060 AT1G31885.1 27.234 235 143 6 32 259 36 249 1.72e-13 70.1
Msa0177060 AT2G34390.2 30.151 199 119 6 78 269 36 221 4.66e-13 67.8
Msa0177060 AT1G31885.2 28.571 189 116 4 78 259 19 195 1.28e-12 67.0
Msa0177060 AT5G37810.1 26.724 232 147 6 39 269 43 252 2.13e-12 66.6
Msa0177060 AT3G06100.1 29.876 241 128 11 39 269 46 255 2.35e-11 63.2

Find 113 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGCACTGCTGGAATTTC+AGG 0.116467 1_4:+63859820 Msa0177060:CDS
CTTGGTATTGCTTGGGCTTT+TGG 0.167039 1_4:+63859775 Msa0177060:CDS
CATTGGCTTTGCTGTATTCA+TGG 0.216375 1_4:+63861964 Msa0177060:CDS
TTGTACTCATATATTTATTA+TGG 0.227027 1_4:+63862960 Msa0177060:three_prime_UTR
TGTGGTGGTGTTGGAATTCT+TGG 0.250599 1_4:+63859757 Msa0177060:CDS
AGCAATAAGGGCCCTATAAA+AGG 0.254565 1_4:-63859641 None:intergenic
TGAGAGGAGAGGGGTATATA+TGG 0.263360 1_4:-63859416 None:intergenic
TGCTGTATTCATGGTTCATT+TGG 0.265351 1_4:+63861973 Msa0177060:CDS
TTGCAATGAACTCAGCAATA+AGG 0.296999 1_4:-63859654 None:intergenic
CTTCAACGTCCTTTGCCATT+TGG 0.306760 1_4:-63859531 None:intergenic
ACATGGTGGCTCAGTGTTTA+GGG 0.314737 1_4:+63860275 Msa0177060:CDS
TTTGGGTTGGACCATTCATT+GGG 0.321050 1_4:+63862611 Msa0177060:CDS
TACATGGTGGCTCAGTGTTT+AGG 0.322720 1_4:+63860274 Msa0177060:CDS
GATTGTTGGTACCTTTGTTT+TGG 0.338987 1_4:+63860414 Msa0177060:CDS
TGCCCTTAGGGCACATGTTA+AGG 0.346156 1_4:+63863061 Msa0177060:three_prime_UTR
ATTAACCCAGCAGTGACATT+TGG 0.351379 1_4:+63860208 Msa0177060:CDS
TTAAAGCTCTTGGATCATTC+AGG 0.352174 1_4:+63862683 Msa0177060:CDS
CAGTGTTTAGGGGCTATTGC+TGG 0.353377 1_4:+63860286 Msa0177060:CDS
GTCCTTGTTTACTGCACTGC+TGG 0.353886 1_4:+63859811 Msa0177060:CDS
CACCAGCTTTAACATCAGTT+TGG 0.356493 1_4:-63859726 None:intergenic
TTGGAATTCTTGGTATTGCT+TGG 0.357512 1_4:+63859767 Msa0177060:CDS
TGCTGGAGTTGGGTTGGTTA+AGG 0.360281 1_4:+63860303 Msa0177060:CDS
AGTGCTTACTTTGATAGATA+TGG 0.363517 1_4:+63860334 Msa0177060:CDS
CTCCATGATGGTTACAGTAC+TGG 0.363825 1_4:+63860373 Msa0177060:CDS
TTAGGGGCTATTGCTGGAGT+TGG 0.368147 1_4:+63860292 Msa0177060:CDS
AAATGTTAACTTGTGCCCTT+AGG 0.373224 1_4:+63863048 Msa0177060:three_prime_UTR
ATACAGAGGAAAGTGTAAAA+AGG 0.376218 1_4:-63862885 None:intergenic
TCATTCACACGATAAATATA+AGG 0.376930 1_4:+63863024 Msa0177060:three_prime_UTR
AGTTGAGTTGATAGAGGAAG+AGG 0.380081 1_4:-63859380 None:intergenic
TGTGTGGTCAGTGGATCTTT+TGG 0.380699 1_4:+63862593 Msa0177060:intron
ACTTCCATTCTTGTTTCAAA+AGG 0.384648 1_4:+63859503 Msa0177060:five_prime_UTR
GAATCTCTAGCACTTCTCTT+AGG 0.389590 1_4:-63860463 None:intergenic
AAAGGAAGAGACTTTGTTGA+TGG 0.390872 1_4:-63859456 None:intergenic
TGGAATTCTTGGTATTGCTT+GGG 0.394756 1_4:+63859768 Msa0177060:CDS
GGCTATTGCTGGAGTTGGGT+TGG 0.397346 1_4:+63860297 Msa0177060:CDS
TGCAATGAACTCAGCAATAA+GGG 0.403418 1_4:-63859653 None:intergenic
TACAGTACTGGTGTTGGATT+AGG 0.404629 1_4:+63860385 Msa0177060:CDS
TAAGATGAATTGATGGTAGA+AGG 0.409224 1_4:-63862647 None:intergenic
TTAACCCAGCAGTGACATTT+GGG 0.413578 1_4:+63860209 Msa0177060:CDS
ATTGTTCTTCATCTTCATCA+TGG 0.416251 1_4:+63862728 Msa0177060:three_prime_UTR
GCAGGTGCTGTTAAAGCTCT+TGG 0.418710 1_4:+63862673 Msa0177060:CDS
GAGTTGAGTTGAGTTGATAG+AGG 0.418993 1_4:-63859386 None:intergenic
TAGGGGCTATTGCTGGAGTT+GGG 0.422243 1_4:+63860293 Msa0177060:CDS
GGTGATGCTTGTGGTGGTGT+TGG 0.424068 1_4:+63859748 Msa0177060:CDS
TGGAATAGAGTGAGAGGAGA+GGG 0.428024 1_4:-63859426 None:intergenic
CTGCTCTTAAGATGAATTGA+TGG 0.428710 1_4:-63862654 None:intergenic
ATGCTGAAGAACTCACAAAA+TGG 0.434066 1_4:+63859617 Msa0177060:CDS
CTTCCATTCTTGTTTCAAAA+GGG 0.444334 1_4:+63859504 Msa0177060:five_prime_UTR
TTTCAAAAGGGTAATCCAAA+TGG 0.448215 1_4:+63859516 Msa0177060:exon
GGCACTCACATGGTCATCCC+AGG 0.449328 1_4:-63862074 None:intergenic
AATAGCCCAAATGTCACTGC+TGG 0.456045 1_4:-63860214 None:intergenic
ATCAATCCTGCTAGAAGTCT+TGG 0.462477 1_4:+63862022 Msa0177060:CDS
AAAGAAGATAATTGAAGAGA+TGG 0.482123 1_4:+63862761 Msa0177060:three_prime_UTR
TTGATGCCAGTGCCAGTGAC+TGG 0.491396 1_4:-63862004 None:intergenic
GGATTAGGTGCTGAGATTGT+TGG 0.494655 1_4:+63860400 Msa0177060:CDS
AGAAGACAAAGAACAGAGAA+AGG 0.503367 1_4:-63859474 None:intergenic
AAATTGTGTCTTCAAGATTG+TGG 0.503880 1_4:+63862823 Msa0177060:three_prime_UTR
AATGTTAACTTGTGCCCTTA+GGG 0.504942 1_4:+63863049 Msa0177060:three_prime_UTR
TGCTAGAGATTCACATGTGC+CGG 0.507488 1_4:+63860474 Msa0177060:CDS
GTTCCTTAACATGTGCCCTA+AGG 0.509508 1_4:-63863064 None:intergenic
ACCATCCCAGTCACTGGCAC+TGG 0.513628 1_4:+63861998 Msa0177060:CDS
TCTACAACAAAGATAAGCCC+TGG 0.515612 1_4:+63862056 Msa0177060:CDS
TCAATGAGTGGTGCTGGTGG+AGG 0.515832 1_4:-63859595 None:intergenic
AGGAAGAGACTTTGTTGATG+GGG 0.518165 1_4:-63859454 None:intergenic
GCAATGGCTGCCCCAATGAA+TGG 0.519647 1_4:-63862622 None:intergenic
TCAGCATCAATGAGTGGTGC+TGG 0.521662 1_4:-63859601 None:intergenic
ATCCAAACTGATGTTAAAGC+TGG 0.525313 1_4:+63859724 Msa0177060:CDS
CATCAATTCATCTTAAGAGC+AGG 0.526225 1_4:+63862655 Msa0177060:CDS
AAGGAAGAGACTTTGTTGAT+GGG 0.530284 1_4:-63859455 None:intergenic
TTGGCAACCATCCCAGTCAC+TGG 0.536043 1_4:+63861992 Msa0177060:CDS
TTCCTTAACATGTGCCCTAA+GGG 0.536820 1_4:-63863063 None:intergenic
AGGATCAGTAGCAGAGAAAA+CGG 0.540023 1_4:-63860443 None:intergenic
ACTTTGTTGATGGGGAAGTG+TGG 0.541378 1_4:-63859446 None:intergenic
GAACAATGCACTCAAACAGT+AGG 0.546368 1_4:-63862712 None:intergenic
GATCAGAGCAATTATGTACA+TGG 0.548140 1_4:+63860258 Msa0177060:CDS
ATGAATACAGCAAAGCCAAT+GGG 0.548910 1_4:-63861962 None:intergenic
GTGGTGCTGGTGGAGGGTCA+TGG 0.549256 1_4:-63859588 None:intergenic
TTCCAGCAGTGCAGTAAACA+AGG 0.555662 1_4:-63859813 None:intergenic
CACCAGTACTGTAACCATCA+TGG 0.555683 1_4:-63860375 None:intergenic
TACTTTGATAGATATGGTGG+TGG 0.560516 1_4:+63860340 Msa0177060:CDS
ACAGCAAAGCCAATGGGAAG+TGG 0.562056 1_4:-63861956 None:intergenic
GGAATAGAGTGAGAGGAGAG+GGG 0.564172 1_4:-63859425 None:intergenic
GAAGTGTGGAATAGAGTGAG+AGG 0.564320 1_4:-63859432 None:intergenic
CAGTCAAAACAGTAACGTAA+AGG 0.566620 1_4:-63859687 None:intergenic
CATGGTGGCTCAGTGTTTAG+GGG 0.567199 1_4:+63860276 Msa0177060:CDS
CTTGAAGACACAATTTAGAG+AGG 0.574934 1_4:-63862816 None:intergenic
GTGGAATAGAGTGAGAGGAG+AGG 0.576913 1_4:-63859427 None:intergenic
ATATTTATCGTGTGAATGAG+AGG 0.581998 1_4:-63863020 None:intergenic
CATGAATACAGCAAAGCCAA+TGG 0.582174 1_4:-63861963 None:intergenic
TTAAGTATATTGTATCAAAG+TGG 0.587783 1_4:+63863127 Msa0177060:three_prime_UTR
TGATGCCAGTGCCAGTGACT+GGG 0.591533 1_4:-63862003 None:intergenic
AACAATGCACTCAAACAGTA+GGG 0.595283 1_4:-63862711 None:intergenic
ATAGCCCAAATGTCACTGCT+GGG 0.598118 1_4:-63860213 None:intergenic
CAATGAGTGGTGCTGGTGGA+GGG 0.603087 1_4:-63859594 None:intergenic
GCAGAACCAAGACTTCTAGC+AGG 0.610357 1_4:-63862028 None:intergenic
GATGGTTACAGTACTGGTGT+TGG 0.612517 1_4:+63860379 Msa0177060:CDS
CTACAACAAAGATAAGCCCT+GGG 0.614303 1_4:+63862057 Msa0177060:CDS
AAGGGTAATCCAAATGGCAA+AGG 0.616325 1_4:+63859522 Msa0177060:exon
GCATCAATGAGTGGTGCTGG+TGG 0.623719 1_4:-63859598 None:intergenic
GCCAGTGCCAGTGACTGGGA+TGG 0.626932 1_4:-63861999 None:intergenic
AAAGCTGGTGGTGATGCTTG+TGG 0.631014 1_4:+63859739 Msa0177060:CDS
TTGGGTTGGACCATTCATTG+GGG 0.640946 1_4:+63862612 Msa0177060:CDS
GCACTCACATGGTCATCCCA+GGG 0.643963 1_4:-63862073 None:intergenic
CAAACTGATGTTAAAGCTGG+TGG 0.644812 1_4:+63859727 Msa0177060:CDS
TTGATGGTAGAAGGCTGCAA+TGG 0.646870 1_4:-63862638 None:intergenic
GACGTTGAAGTTGCTGAACG+TGG 0.653894 1_4:+63859544 Msa0177060:CDS
AACGGTGTAAACCAAAACAA+AGG 0.663291 1_4:-63860425 None:intergenic
GCTTACTTTGATAGATATGG+TGG 0.668285 1_4:+63860337 Msa0177060:CDS
GCTGGTGGTGATGCTTGTGG+TGG 0.673105 1_4:+63859742 Msa0177060:CDS
TAATAAATATATGAGTACAA+AGG 0.683706 1_4:-63862957 None:intergenic
CAGAGCAATTATGTACATGG+TGG 0.699949 1_4:+63860261 Msa0177060:CDS
AGTTCTTCAGCATCAATGAG+TGG 0.710311 1_4:-63859607 None:intergenic
ACGCACTAAAGAGAATACAG+AGG 0.714034 1_4:-63862899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAGTATGAAAATTTA+TGG + chr1_4:63860155-63860174 Msa0177060:intron 10.0%
!! TATAAAGTATGAAAATTTAT+GGG + chr1_4:63860156-63860175 Msa0177060:intron 10.0%
!! TATTGCATTAAAAAAATATT+TGG - chr1_4:63861022-63861041 None:intergenic 10.0%
!!! TTTATTCTTTATTTATTAGA+AGG - chr1_4:63861768-63861787 None:intergenic 10.0%
!! ATAAATAAAGAATAAAATCA+TGG + chr1_4:63861772-63861791 Msa0177060:intron 10.0%
!! TAAATAAAGAATAAAATCAT+GGG + chr1_4:63861773-63861792 Msa0177060:intron 10.0%
!! TTCAATACAAATAATTTATA+TGG - chr1_4:63862497-63862516 None:intergenic 10.0%
!!! TTTTTTGGCTTATATTTTAA+AGG + chr1_4:63860108-63860127 Msa0177060:intron 15.0%
!!! TTTTTGGCTTATATTTTAAA+GGG + chr1_4:63860109-63860128 Msa0177060:intron 15.0%
!! AAATAAAAATGAAAACATAC+CGG - chr1_4:63860496-63860515 None:intergenic 15.0%
!!! ATGTTGAAAATATTGATTAA+AGG + chr1_4:63860618-63860637 Msa0177060:intron 15.0%
!!! TGTTGAAAATATTGATTAAA+GGG + chr1_4:63860619-63860638 Msa0177060:intron 15.0%
!!! TGTGTATATGATTTTTTTTT+AGG - chr1_4:63860900-63860919 None:intergenic 15.0%
!!! TTAATTTTGAAGAAGTTTTT+TGG + chr1_4:63861049-63861068 Msa0177060:intron 15.0%
!! AATGATGGTATTTATTAATT+TGG - chr1_4:63861340-63861359 None:intergenic 15.0%
!!! AGAAATAAATTTTGTTTTCA+AGG - chr1_4:63861599-63861618 None:intergenic 15.0%
!! ATTATTTGTATTCATATGTT+TGG + chr1_4:63861864-63861883 Msa0177060:intron 15.0%
!!! TTTTTTTATTTTGTATGTGA+AGG + chr1_4:63861925-63861944 Msa0177060:intron 15.0%
!! TAATAAATATATGAGTACAA+AGG - chr1_4:63862960-63862979 None:intergenic 15.0%
!! TTGTACTCATATATTTATTA+TGG + chr1_4:63862960-63862979 Msa0177060:three_prime_UTR 15.0%
!!! TTTAACTTTGAAGAGTTTTT+TGG + chr1_4:63860093-63860112 Msa0177060:intron 20.0%
!!! AAAAATAAAGTATTTGCAAG+TGG + chr1_4:63860669-63860688 Msa0177060:intron 20.0%
!! AGTAATTACCAAAAACAATA+AGG + chr1_4:63861236-63861255 Msa0177060:intron 20.0%
!! GTAATTACCAAAAACAATAA+GGG + chr1_4:63861237-63861256 Msa0177060:intron 20.0%
!! ATCATTTCATTTGGAAATTA+TGG - chr1_4:63861443-63861462 None:intergenic 20.0%
!! TTTAACAACATCATTTCATT+TGG - chr1_4:63861452-63861471 None:intergenic 20.0%
!!! ATAGGCTTTACATATATTTT+TGG + chr1_4:63862428-63862447 Msa0177060:intron 20.0%
!! ATTATTTGTATTGAATGAAC+CGG + chr1_4:63862502-63862521 Msa0177060:intron 20.0%
!! TTGTCAACTAAAAAAAGATA+AGG + chr1_4:63862535-63862554 Msa0177060:intron 20.0%
!! CTAAAAAAAGATAAGGAATA+TGG + chr1_4:63862542-63862561 Msa0177060:intron 20.0%
!! TTAAGTATATTGTATCAAAG+TGG + chr1_4:63863127-63863146 Msa0177060:three_prime_UTR 20.0%
! AAAGGGTTACTATTATTTGA+AGG + chr1_4:63860126-63860145 Msa0177060:intron 25.0%
!! GTTTGAAATGAATCTATTGT+AGG + chr1_4:63860178-63860197 Msa0177060:intron 25.0%
! AATGTATATACGACTAAATG+TGG + chr1_4:63860642-63860661 Msa0177060:intron 25.0%
!! TTTAAAACACACCATAAACT+AGG - chr1_4:63860770-63860789 None:intergenic 25.0%
!! AAAAATATTTGGTTCCTCTA+GGG - chr1_4:63861011-63861030 None:intergenic 25.0%
!! AAAAAATATTTGGTTCCTCT+AGG - chr1_4:63861012-63861031 None:intergenic 25.0%
!!! GTTTGAACTAGTTTGTTTTT+TGG + chr1_4:63861098-63861117 Msa0177060:intron 25.0%
!! AACATTACCCTTATTGTTTT+TGG - chr1_4:63861247-63861266 None:intergenic 25.0%
!!! TTTTTACCTACTTTTTTGCT+TGG + chr1_4:63861280-63861299 Msa0177060:intron 25.0%
! AAGCACTAAGAAATTAATGA+TGG - chr1_4:63861355-63861374 None:intergenic 25.0%
!!! AAAACTGATATTGACTTATC+AGG - chr1_4:63861708-63861727 None:intergenic 25.0%
!! TGATAAGTCAATATCAGTTT+TGG + chr1_4:63861707-63861726 Msa0177060:intron 25.0%
! ATAAAGTGACAAAACAAATG+GGG - chr1_4:63861831-63861850 None:intergenic 25.0%
! CATAAAGTGACAAAACAAAT+GGG - chr1_4:63861832-63861851 None:intergenic 25.0%
! ACATAAAGTGACAAAACAAA+TGG - chr1_4:63861833-63861852 None:intergenic 25.0%
!! TATTTTGTATGTGAAGGTTT+TGG + chr1_4:63861931-63861950 Msa0177060:intron 25.0%
! AGAAGTTAAAATATGGAAAG+AGG - chr1_4:63862098-63862117 None:intergenic 25.0%
!! GATTTTCATCAATTCATGTT+TGG + chr1_4:63862184-63862203 Msa0177060:intron 25.0%
! TTTCTTTGGTAAAATTGAAC+TGG + chr1_4:63862248-63862267 Msa0177060:intron 25.0%
! ATATATGTAAAGCCTATGTT+TGG - chr1_4:63862425-63862444 None:intergenic 25.0%
! TTCATACTCTTAATTCTTGT+AGG + chr1_4:63862471-63862490 Msa0177060:intron 25.0%
! AAAGAAGATAATTGAAGAGA+TGG + chr1_4:63862761-63862780 Msa0177060:three_prime_UTR 25.0%
! TCATTCACACGATAAATATA+AGG + chr1_4:63863024-63863043 Msa0177060:three_prime_UTR 25.0%
! ACTTCCATTCTTGTTTCAAA+AGG + chr1_4:63859503-63859522 Msa0177060:five_prime_UTR 30.0%
! CTTCCATTCTTGTTTCAAAA+GGG + chr1_4:63859504-63859523 Msa0177060:five_prime_UTR 30.0%
!!! TTACCCTTTTGAAACAAGAA+TGG - chr1_4:63859510-63859529 None:intergenic 30.0%
TTTCAAAAGGGTAATCCAAA+TGG + chr1_4:63859516-63859535 Msa0177060:exon 30.0%
! TCACAAAATGGTCCTTTTAT+AGG + chr1_4:63859629-63859648 Msa0177060:CDS 30.0%
! CACAAAATGGTCCTTTTATA+GGG + chr1_4:63859630-63859649 Msa0177060:CDS 30.0%
!!! GTTACTGTTTTGACTGTTAT+TGG + chr1_4:63859694-63859713 Msa0177060:CDS 30.0%
TTTGTTTGTGTGAGTTTCAA+TGG - chr1_4:63859903-63859922 None:intergenic 30.0%
!! TTTTATCTTGATTCGAACTC+GGG - chr1_4:63859934-63859953 None:intergenic 30.0%
!! CTTTTATCTTGATTCGAACT+CGG - chr1_4:63859935-63859954 None:intergenic 30.0%
TGAAATGAATCTATTGTAGG+TGG + chr1_4:63860181-63860200 Msa0177060:intron 30.0%
AGTGCTTACTTTGATAGATA+TGG + chr1_4:63860334-63860353 Msa0177060:CDS 30.0%
! CAATATTTTCAACATACCTC+AGG - chr1_4:63860613-63860632 None:intergenic 30.0%
TATATACGACTAAATGTGGA+AGG + chr1_4:63860646-63860665 Msa0177060:intron 30.0%
TACACAATCATGATAAGTCA+TGG + chr1_4:63860927-63860946 Msa0177060:intron 30.0%
!!! TAGTTTGTTTTTTGGTGCTT+TGG + chr1_4:63861106-63861125 Msa0177060:intron 30.0%
TCATTTGGAAATTATGGTGA+AGG - chr1_4:63861437-63861456 None:intergenic 30.0%
ATGTCCAAACTTGTAAAAAG+TGG + chr1_4:63861560-63861579 Msa0177060:intron 30.0%
!!! GAATCCACTTTTTACAAGTT+TGG - chr1_4:63861567-63861586 None:intergenic 30.0%
TAAAGTGACAAAACAAATGG+GGG - chr1_4:63861830-63861849 None:intergenic 30.0%
TTGAATTAAAGCAGATACGA+AGG - chr1_4:63861894-63861913 None:intergenic 30.0%
TCGTATCTGCTTTAATTCAA+TGG + chr1_4:63861894-63861913 Msa0177060:intron 30.0%
!!! TCCATATTTTAACTTCTAGC+TGG + chr1_4:63862101-63862120 Msa0177060:intron 30.0%
ACCAGCTAGAAGTTAAAATA+TGG - chr1_4:63862105-63862124 None:intergenic 30.0%
ATCTTTAACACAAGCAATTC+TGG - chr1_4:63862211-63862230 None:intergenic 30.0%
GCTAGAAATCTAAGTTTCTT+TGG + chr1_4:63862234-63862253 Msa0177060:intron 30.0%
!! CTGGCATTGAAATCAATTTT+AGG + chr1_4:63862267-63862286 Msa0177060:intron 30.0%
AACATGAGCTTAGTTATGTT+TGG - chr1_4:63862301-63862320 None:intergenic 30.0%
AACATAACTAAGCTCATGTT+TGG + chr1_4:63862301-63862320 Msa0177060:intron 30.0%
! ATATTTTGTTCCTTTGTGTG+TGG + chr1_4:63862577-63862596 Msa0177060:intron 30.0%
! TAAGATGAATTGATGGTAGA+AGG - chr1_4:63862650-63862669 None:intergenic 30.0%
ATTGTTCTTCATCTTCATCA+TGG + chr1_4:63862728-63862747 Msa0177060:three_prime_UTR 30.0%
!!! CATCTTCATCATGGTTTTAA+TGG + chr1_4:63862737-63862756 Msa0177060:three_prime_UTR 30.0%
AAATTGTGTCTTCAAGATTG+TGG + chr1_4:63862823-63862842 Msa0177060:three_prime_UTR 30.0%
ATTAAAGTCTCTTTCGTTAC+AGG + chr1_4:63862857-63862876 Msa0177060:intron 30.0%
TTAAAGTCTCTTTCGTTACA+GGG + chr1_4:63862858-63862877 Msa0177060:intron 30.0%
! ATACAGAGGAAAGTGTAAAA+AGG - chr1_4:63862888-63862907 None:intergenic 30.0%
ATATTTATCGTGTGAATGAG+AGG - chr1_4:63863023-63863042 None:intergenic 30.0%
AAGGAAGAGACTTTGTTGAT+GGG - chr1_4:63859458-63859477 None:intergenic 35.0%
AAAGGAAGAGACTTTGTTGA+TGG - chr1_4:63859459-63859478 None:intergenic 35.0%
AGAAGACAAAGAACAGAGAA+AGG - chr1_4:63859477-63859496 None:intergenic 35.0%
ATGCTGAAGAACTCACAAAA+TGG + chr1_4:63859617-63859636 Msa0177060:CDS 35.0%
TGCAATGAACTCAGCAATAA+GGG - chr1_4:63859656-63859675 None:intergenic 35.0%
TTGCAATGAACTCAGCAATA+AGG - chr1_4:63859657-63859676 None:intergenic 35.0%
CAGTCAAAACAGTAACGTAA+AGG - chr1_4:63859690-63859709 None:intergenic 35.0%
ATCCAAACTGATGTTAAAGC+TGG + chr1_4:63859724-63859743 Msa0177060:CDS 35.0%
TTGGAATTCTTGGTATTGCT+TGG + chr1_4:63859767-63859786 Msa0177060:CDS 35.0%
TGGAATTCTTGGTATTGCTT+GGG + chr1_4:63859768-63859787 Msa0177060:CDS 35.0%
! TTTATCTTGATTCGAACTCG+GGG - chr1_4:63859933-63859952 None:intergenic 35.0%
!! CGAATCAAGATAAAAGTGTC+CGG + chr1_4:63859939-63859958 Msa0177060:intron 35.0%
CTGACAATACCGATATTGTT+AGG - chr1_4:63859965-63859984 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG + chr1_4:63860219-63860238 Msa0177060:CDS 35.0%
GATCAGAGCAATTATGTACA+TGG + chr1_4:63860258-63860277 Msa0177060:CDS 35.0%
GCTTACTTTGATAGATATGG+TGG + chr1_4:63860337-63860356 Msa0177060:CDS 35.0%
TACTTTGATAGATATGGTGG+TGG + chr1_4:63860340-63860359 Msa0177060:CDS 35.0%
!! GATTGTTGGTACCTTTGTTT+TGG + chr1_4:63860414-63860433 Msa0177060:CDS 35.0%
AACGGTGTAAACCAAAACAA+AGG - chr1_4:63860428-63860447 None:intergenic 35.0%
AATTGCAACCTCCTAGTTTA+TGG + chr1_4:63860756-63860775 Msa0177060:intron 35.0%
AAAACACACCATAAACTAGG+AGG - chr1_4:63860767-63860786 None:intergenic 35.0%
AAAGTGAGAAATATCCCTAG+AGG + chr1_4:63860994-63861013 Msa0177060:intron 35.0%
ATGATCTCAAATTGCTTCAG+AGG + chr1_4:63861178-63861197 Msa0177060:intron 35.0%
AAGAAGCCAAGCAAAAAAGT+AGG - chr1_4:63861289-63861308 None:intergenic 35.0%
! GCTTCTTTTAGTCAACATCT+TGG + chr1_4:63861302-63861321 Msa0177060:intron 35.0%
! TAGTGCTTACTTGCATCTTT+TGG + chr1_4:63861367-63861386 Msa0177060:intron 35.0%
! AGTGCTTACTTGCATCTTTT+GGG + chr1_4:63861368-63861387 Msa0177060:intron 35.0%
TGGAAATTATGGTGAAGGAA+AGG - chr1_4:63861432-63861451 None:intergenic 35.0%
CTCTCATACAAGGTATGATA+GGG - chr1_4:63861515-63861534 None:intergenic 35.0%
ACTCTCATACAAGGTATGAT+AGG - chr1_4:63861516-63861535 None:intergenic 35.0%
GACAATGACATAGAAGTCAT+AGG - chr1_4:63861658-63861677 None:intergenic 35.0%
ATGAATACAGCAAAGCCAAT+GGG - chr1_4:63861965-63861984 None:intergenic 35.0%
TGCTGTATTCATGGTTCATT+TGG + chr1_4:63861973-63861992 Msa0177060:CDS 35.0%
!! GATTTGATTTGACCAAAGCA+CGG + chr1_4:63862331-63862350 Msa0177060:intron 35.0%
GTTTGGATTCACAATGAGTT+TGG - chr1_4:63862365-63862384 None:intergenic 35.0%
CTGCTCTTAAGATGAATTGA+TGG - chr1_4:63862657-63862676 None:intergenic 35.0%
CATCAATTCATCTTAAGAGC+AGG + chr1_4:63862655-63862674 Msa0177060:CDS 35.0%
TTAAAGCTCTTGGATCATTC+AGG + chr1_4:63862683-63862702 Msa0177060:CDS 35.0%
AACAATGCACTCAAACAGTA+GGG - chr1_4:63862714-63862733 None:intergenic 35.0%
CTTGAAGACACAATTTAGAG+AGG - chr1_4:63862819-63862838 None:intergenic 35.0%
TAAAGTCTCTTTCGTTACAG+GGG + chr1_4:63862859-63862878 Msa0177060:intron 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG + chr1_4:63863048-63863067 Msa0177060:three_prime_UTR 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG + chr1_4:63863049-63863068 Msa0177060:three_prime_UTR 35.0%
!! AGTTGAGTTGATAGAGGAAG+AGG - chr1_4:63859383-63859402 None:intergenic 40.0%
!! GAGTTGAGTTGAGTTGATAG+AGG - chr1_4:63859389-63859408 None:intergenic 40.0%
AGGAAGAGACTTTGTTGATG+GGG - chr1_4:63859457-63859476 None:intergenic 40.0%
AAGGGTAATCCAAATGGCAA+AGG + chr1_4:63859522-63859541 Msa0177060:exon 40.0%
AGTTCTTCAGCATCAATGAG+TGG - chr1_4:63859610-63859629 None:intergenic 40.0%
AGCAATAAGGGCCCTATAAA+AGG - chr1_4:63859644-63859663 None:intergenic 40.0%
! CACCAGCTTTAACATCAGTT+TGG - chr1_4:63859729-63859748 None:intergenic 40.0%
CAAACTGATGTTAAAGCTGG+TGG + chr1_4:63859727-63859746 Msa0177060:CDS 40.0%
AACTCACACAAACAAATGCG+AGG + chr1_4:63859907-63859926 Msa0177060:intron 40.0%
CAATACCGATATTGTTAGGC+CGG - chr1_4:63859961-63859980 None:intergenic 40.0%
TCGGTATTGTCAGTTGAGTT+AGG + chr1_4:63859972-63859991 Msa0177060:intron 40.0%
CGGTATTGTCAGTTGAGTTA+GGG + chr1_4:63859973-63859992 Msa0177060:intron 40.0%
ATTAACCCAGCAGTGACATT+TGG + chr1_4:63860208-63860227 Msa0177060:CDS 40.0%
TTAACCCAGCAGTGACATTT+GGG + chr1_4:63860209-63860228 Msa0177060:CDS 40.0%
CAGAGCAATTATGTACATGG+TGG + chr1_4:63860261-63860280 Msa0177060:CDS 40.0%
! GGTGCTAATTTTCTCCATGA+TGG + chr1_4:63860361-63860380 Msa0177060:CDS 40.0%
!! TACAGTACTGGTGTTGGATT+AGG + chr1_4:63860385-63860404 Msa0177060:CDS 40.0%
AGGATCAGTAGCAGAGAAAA+CGG - chr1_4:63860446-63860465 None:intergenic 40.0%
GAATCTCTAGCACTTCTCTT+AGG - chr1_4:63860466-63860485 None:intergenic 40.0%
CATACATGCACTTCGAAAAC+AGG - chr1_4:63860541-63860560 None:intergenic 40.0%
ACATGTGATTTAGTTGCCTG+AGG + chr1_4:63860594-63860613 Msa0177060:intron 40.0%
TTTACCACCCTAGCATGTTT+AGG - chr1_4:63861398-63861417 None:intergenic 40.0%
CCACAAACAACTCTCATACA+AGG - chr1_4:63861525-63861544 None:intergenic 40.0%
CCTTGTATGAGAGTTGTTTG+TGG + chr1_4:63861522-63861541 Msa0177060:intron 40.0%
TGTATGAGAGTTGTTTGTGG+AGG + chr1_4:63861525-63861544 Msa0177060:intron 40.0%
TCTATGTCATTGTCCTAAGC+TGG + chr1_4:63861664-63861683 Msa0177060:intron 40.0%
CCAATTAGATTTGCCAGCTT+AGG - chr1_4:63861680-63861699 None:intergenic 40.0%
CCTAAGCTGGCAAATCTAAT+TGG + chr1_4:63861677-63861696 Msa0177060:intron 40.0%
CATGAATACAGCAAAGCCAA+TGG - chr1_4:63861966-63861985 None:intergenic 40.0%
!! CATTGGCTTTGCTGTATTCA+TGG + chr1_4:63861964-63861983 Msa0177060:CDS 40.0%
ATCAATCCTGCTAGAAGTCT+TGG + chr1_4:63862022-63862041 Msa0177060:CDS 40.0%
TCTACAACAAAGATAAGCCC+TGG + chr1_4:63862056-63862075 Msa0177060:CDS 40.0%
CTACAACAAAGATAAGCCCT+GGG + chr1_4:63862057-63862076 Msa0177060:CDS 40.0%
!! TCCAAACCAGCATTGATTTG+TGG + chr1_4:63862378-63862397 Msa0177060:intron 40.0%
! TGATTTGTGGCCAATCCAAT+TGG + chr1_4:63862391-63862410 Msa0177060:intron 40.0%
! AAAGCCTATGTTTGGTTCCA+TGG - chr1_4:63862417-63862436 None:intergenic 40.0%
AGTTGACAACTTGACAATGC+CGG - chr1_4:63862524-63862543 None:intergenic 40.0%
!!! TTTTGGGTTGGACCATTCAT+TGG + chr1_4:63862610-63862629 Msa0177060:CDS 40.0%
!! TTTGGGTTGGACCATTCATT+GGG + chr1_4:63862611-63862630 Msa0177060:CDS 40.0%
GAACAATGCACTCAAACAGT+AGG - chr1_4:63862715-63862734 None:intergenic 40.0%
AAAGTCTCTTTCGTTACAGG+GGG + chr1_4:63862860-63862879 Msa0177060:intron 40.0%
ACGCACTAAAGAGAATACAG+AGG - chr1_4:63862902-63862921 None:intergenic 40.0%
TTCCTTAACATGTGCCCTAA+GGG - chr1_4:63863066-63863085 None:intergenic 40.0%
! TGAGAGGAGAGGGGTATATA+TGG - chr1_4:63859419-63859438 None:intergenic 45.0%
TGGAATAGAGTGAGAGGAGA+GGG - chr1_4:63859429-63859448 None:intergenic 45.0%
GAAGTGTGGAATAGAGTGAG+AGG - chr1_4:63859435-63859454 None:intergenic 45.0%
! ACTTTGTTGATGGGGAAGTG+TGG - chr1_4:63859449-63859468 None:intergenic 45.0%
CTTCAACGTCCTTTGCCATT+TGG - chr1_4:63859534-63859553 None:intergenic 45.0%
! TGTGGTGGTGTTGGAATTCT+TGG + chr1_4:63859757-63859776 Msa0177060:CDS 45.0%
! CTTGGTATTGCTTGGGCTTT+TGG + chr1_4:63859775-63859794 Msa0177060:CDS 45.0%
TTCCAGCAGTGCAGTAAACA+AGG - chr1_4:63859816-63859835 None:intergenic 45.0%
TACTGCACTGCTGGAATTTC+AGG + chr1_4:63859820-63859839 Msa0177060:CDS 45.0%
!! TCCTTTTGAGTCCTTAGACG+AGG + chr1_4:63859868-63859887 Msa0177060:intron 45.0%
ACCTCGTCTAAGGACTCAAA+AGG - chr1_4:63859872-63859891 None:intergenic 45.0%
GGTACTTAACACCTCGTCTA+AGG - chr1_4:63859882-63859901 None:intergenic 45.0%
AGTGTCCGGCCTAACAATAT+CGG + chr1_4:63859953-63859972 Msa0177060:intron 45.0%
GTCAGTTGAGTTAGGGCTTA+TGG + chr1_4:63859980-63859999 Msa0177060:intron 45.0%
ATAGCCCAAATGTCACTGCT+GGG - chr1_4:63860216-63860235 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG - chr1_4:63860217-63860236 None:intergenic 45.0%
!!! TGGGCTATTTTTGGCTCGTA+AGG + chr1_4:63860228-63860247 Msa0177060:CDS 45.0%
TACATGGTGGCTCAGTGTTT+AGG + chr1_4:63860274-63860293 Msa0177060:CDS 45.0%
ACATGGTGGCTCAGTGTTTA+GGG + chr1_4:63860275-63860294 Msa0177060:CDS 45.0%
CTCCATGATGGTTACAGTAC+TGG + chr1_4:63860373-63860392 Msa0177060:CDS 45.0%
CACCAGTACTGTAACCATCA+TGG - chr1_4:63860378-63860397 None:intergenic 45.0%
!! GATGGTTACAGTACTGGTGT+TGG + chr1_4:63860379-63860398 Msa0177060:CDS 45.0%
!! GGATTAGGTGCTGAGATTGT+TGG + chr1_4:63860400-63860419 Msa0177060:CDS 45.0%
TGCTAGAGATTCACATGTGC+CGG + chr1_4:63860474-63860493 Msa0177060:CDS 45.0%
!! TTGGTGCTTTGGTTCTGCTT+TGG + chr1_4:63861117-63861136 Msa0177060:intron 45.0%
TGGGTTCACCTAAACATGCT+AGG + chr1_4:63861387-63861406 Msa0177060:intron 45.0%
GGGTTCACCTAAACATGCTA+GGG + chr1_4:63861388-63861407 Msa0177060:intron 45.0%
TTCACCTAAACATGCTAGGG+TGG + chr1_4:63861391-63861410 Msa0177060:intron 45.0%
AGCGTGCCTTTGTGGTATAT+GGG + chr1_4:63861486-63861505 Msa0177060:intron 45.0%
ATGAGAGTTGTTTGTGGAGG+TGG + chr1_4:63861528-63861547 Msa0177060:intron 45.0%
GTGACAAAACAAATGGGGGA+TGG - chr1_4:63861826-63861845 None:intergenic 45.0%
!! TATGGAAAGAGGCACTCACA+TGG - chr1_4:63862087-63862106 None:intergenic 45.0%
TTGGCAAAATCACCGTGCTT+TGG - chr1_4:63862346-63862365 None:intergenic 45.0%
! GCCACAAATCAATGCTGGTT+TGG - chr1_4:63862382-63862401 None:intergenic 45.0%
! GATTGGCCACAAATCAATGC+TGG - chr1_4:63862387-63862406 None:intergenic 45.0%
! TGTTTGGTTCCATGGCCAAT+TGG - chr1_4:63862409-63862428 None:intergenic 45.0%
TTGGCCATGGAACCAAACAT+AGG + chr1_4:63862410-63862429 Msa0177060:intron 45.0%
! TGTGTGGTCAGTGGATCTTT+TGG + chr1_4:63862593-63862612 Msa0177060:intron 45.0%
! GTGTGGTCAGTGGATCTTTT+GGG + chr1_4:63862594-63862613 Msa0177060:intron 45.0%
!! TTGGGTTGGACCATTCATTG+GGG + chr1_4:63862612-63862631 Msa0177060:CDS 45.0%
! TTGATGGTAGAAGGCTGCAA+TGG - chr1_4:63862641-63862660 None:intergenic 45.0%
GTTCCTTAACATGTGCCCTA+AGG - chr1_4:63863067-63863086 None:intergenic 45.0%
!! TTTAGAAAATAAATAAATTA+AGG - chr1_4:63860977-63860996 None:intergenic 5.0%
GGAATAGAGTGAGAGGAGAG+GGG - chr1_4:63859428-63859447 None:intergenic 50.0%
GTGGAATAGAGTGAGAGGAG+AGG - chr1_4:63859430-63859449 None:intergenic 50.0%
GACGTTGAAGTTGCTGAACG+TGG + chr1_4:63859544-63859563 Msa0177060:CDS 50.0%
TCAGCATCAATGAGTGGTGC+TGG - chr1_4:63859604-63859623 None:intergenic 50.0%
! AAAGCTGGTGGTGATGCTTG+TGG + chr1_4:63859739-63859758 Msa0177060:CDS 50.0%
! GGTATTGCTTGGGCTTTTGG+TGG + chr1_4:63859778-63859797 Msa0177060:CDS 50.0%
! GTCCTTGTTTACTGCACTGC+TGG + chr1_4:63859811-63859830 Msa0177060:CDS 50.0%
CATGGTGGCTCAGTGTTTAG+GGG + chr1_4:63860276-63860295 Msa0177060:CDS 50.0%
CAGTGTTTAGGGGCTATTGC+TGG + chr1_4:63860286-63860305 Msa0177060:CDS 50.0%
TTAGGGGCTATTGCTGGAGT+TGG + chr1_4:63860292-63860311 Msa0177060:CDS 50.0%
TAGGGGCTATTGCTGGAGTT+GGG + chr1_4:63860293-63860312 Msa0177060:CDS 50.0%
!! TGCTGGAGTTGGGTTGGTTA+AGG + chr1_4:63860303-63860322 Msa0177060:CDS 50.0%
CAGCGTGCCTTTGTGGTATA+TGG + chr1_4:63861485-63861504 Msa0177060:intron 50.0%
GCGTGCCTTTGTGGTATATG+GGG + chr1_4:63861487-63861506 Msa0177060:intron 50.0%
CGTGCCTTTGTGGTATATGG+GGG + chr1_4:63861488-63861507 Msa0177060:intron 50.0%
CAAATGGGGGATGGACAGAT+GGG - chr1_4:63861817-63861836 None:intergenic 50.0%
ACAAATGGGGGATGGACAGA+TGG - chr1_4:63861818-63861837 None:intergenic 50.0%
!! GTTTTGGCACCACTTCCCAT+TGG + chr1_4:63861947-63861966 Msa0177060:CDS 50.0%
ACAGCAAAGCCAATGGGAAG+TGG - chr1_4:63861959-63861978 None:intergenic 50.0%
GCAGAACCAAGACTTCTAGC+AGG - chr1_4:63862031-63862050 None:intergenic 50.0%
GGTTCCATGGCCAATTGGAT+TGG - chr1_4:63862404-63862423 None:intergenic 50.0%
GTTCCTTTGTGTGTGGTCAG+TGG + chr1_4:63862584-63862603 Msa0177060:intron 50.0%
GATCCACTGACCACACACAA+AGG - chr1_4:63862590-63862609 None:intergenic 50.0%
!! GGTCAGTGGATCTTTTGGGT+TGG + chr1_4:63862598-63862617 Msa0177060:intron 50.0%
!! GCAGGTGCTGTTAAAGCTCT+TGG + chr1_4:63862673-63862692 Msa0177060:CDS 50.0%
TGCCCTTAGGGCACATGTTA+AGG + chr1_4:63863061-63863080 Msa0177060:three_prime_UTR 50.0%
!! CAATGAGTGGTGCTGGTGGA+GGG - chr1_4:63859597-63859616 None:intergenic 55.0%
!! TCAATGAGTGGTGCTGGTGG+AGG - chr1_4:63859598-63859617 None:intergenic 55.0%
! GCATCAATGAGTGGTGCTGG+TGG - chr1_4:63859601-63859620 None:intergenic 55.0%
! GGTGATGCTTGTGGTGGTGT+TGG + chr1_4:63859748-63859767 Msa0177060:CDS 55.0%
GGCTATTGCTGGAGTTGGGT+TGG + chr1_4:63860297-63860316 Msa0177060:CDS 55.0%
ACAACAGCAGCGTGCCTTTG+TGG + chr1_4:63861478-63861497 Msa0177060:intron 55.0%
GGGACCCCCATATACCACAA+AGG - chr1_4:63861495-63861514 None:intergenic 55.0%
TTGGCAACCATCCCAGTCAC+TGG + chr1_4:63861992-63862011 Msa0177060:CDS 55.0%
TGATGCCAGTGCCAGTGACT+GGG - chr1_4:63862006-63862025 None:intergenic 55.0%
TTGATGCCAGTGCCAGTGAC+TGG - chr1_4:63862007-63862026 None:intergenic 55.0%
GCACTCACATGGTCATCCCA+GGG - chr1_4:63862076-63862095 None:intergenic 55.0%
GTGGCCAATCCAATTGGCCA+TGG + chr1_4:63862397-63862416 Msa0177060:intron 55.0%
GCAATGGCTGCCCCAATGAA+TGG - chr1_4:63862625-63862644 None:intergenic 55.0%
! GCTGGTGGTGATGCTTGTGG+TGG + chr1_4:63859742-63859761 Msa0177060:CDS 60.0%
ACCATCCCAGTCACTGGCAC+TGG + chr1_4:63861998-63862017 Msa0177060:CDS 60.0%
GGCACTCACATGGTCATCCC+AGG - chr1_4:63862077-63862096 None:intergenic 60.0%
!! GTGGTGCTGGTGGAGGGTCA+TGG - chr1_4:63859591-63859610 None:intergenic 65.0%
GCCAGTGCCAGTGACTGGGA+TGG - chr1_4:63862002-63862021 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63859356 63863164 63859356 ID=Msa0177060;Name=Msa0177060
chr1_4 mRNA 63859356 63863164 63859356 ID=Msa0177060-mRNA-1;Parent=Msa0177060;Name=Msa0177060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|0.75|0.6|5|421|287
chr1_4 exon 63859356 63859841 63859356 ID=Msa0177060-mRNA-1:exon:20693;Parent=Msa0177060-mRNA-1
chr1_4 exon 63860200 63860495 63860200 ID=Msa0177060-mRNA-1:exon:20694;Parent=Msa0177060-mRNA-1
chr1_4 exon 63861947 63862087 63861947 ID=Msa0177060-mRNA-1:exon:20695;Parent=Msa0177060-mRNA-1
chr1_4 exon 63862604 63862858 63862604 ID=Msa0177060-mRNA-1:exon:20696;Parent=Msa0177060-mRNA-1
chr1_4 exon 63862879 63863164 63862879 ID=Msa0177060-mRNA-1:exon:20697;Parent=Msa0177060-mRNA-1
chr1_4 five_prime_UTR 63859356 63859534 63859356 ID=Msa0177060-mRNA-1:five_prime_utr;Parent=Msa0177060-mRNA-1
chr1_4 CDS 63859535 63859841 63859535 ID=Msa0177060-mRNA-1:cds;Parent=Msa0177060-mRNA-1
chr1_4 CDS 63860200 63860495 63860200 ID=Msa0177060-mRNA-1:cds;Parent=Msa0177060-mRNA-1
chr1_4 CDS 63861947 63862087 63861947 ID=Msa0177060-mRNA-1:cds;Parent=Msa0177060-mRNA-1
chr1_4 CDS 63862604 63862723 63862604 ID=Msa0177060-mRNA-1:cds;Parent=Msa0177060-mRNA-1
chr1_4 three_prime_UTR 63862724 63862858 63862724 ID=Msa0177060-mRNA-1:three_prime_utr;Parent=Msa0177060-mRNA-1
chr1_4 three_prime_UTR 63862879 63863164 63862879 ID=Msa0177060-mRNA-1:three_prime_utr;Parent=Msa0177060-mRNA-1
Gene Sequence

>Msa0177060

ATGGCAAAGGACGTTGAAGTTGCTGAACGTGGCTCTTTCTCTAACAAAGACTACCATGACCCTCCACCAGCACCACTCATTGATGCTGAAGAACTCACAAAATGGTCCTTTTATAGGGCCCTTATTGCTGAGTTCATTGCAACTTTACTTTTCCTTTACGTTACTGTTTTGACTGTTATTGGTTACAGTATCCAAACTGATGTTAAAGCTGGTGGTGATGCTTGTGGTGGTGTTGGAATTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATTTCAGGTGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGATCAGAGCAATTATGTACATGGTGGCTCAGTGTTTAGGGGCTATTGCTGGAGTTGGGTTGGTTAAGGCTTTTCAAAGTGCTTACTTTGATAGATATGGTGGTGGTGCTAATTTTCTCCATGATGGTTACAGTACTGGTGTTGGATTAGGTGCTGAGATTGTTGGTACCTTTGTTTTGGTTTACACCGTTTTCTCTGCTACTGATCCTAAGAGAAGTGCTAGAGATTCACATGTGCCGGTTTTGGCACCACTTCCCATTGGCTTTGCTGTATTCATGGTTCATTTGGCAACCATCCCAGTCACTGGCACTGGCATCAATCCTGCTAGAAGTCTTGGTTCTGCTGTTATCTACAACAAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCCTTCTACCATCAATTCATCTTAAGAGCAGGTGCTGTTAAAGCTCTTGGATCATTCAGGAGTAACCCTACTGTTTGA
Protein sequence

>Msa0177060

MAKDVEVAERGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAIAGVGLVKAFQSAYFDRYGGGANFLHDGYSTGVGLGAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV*