AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382660 MtrunA17_Chr3g0113211 99.310 290 2 0 1 290 1 290 0.0 587
Msa0382660 MtrunA17_Chr5g0436701 93.080 289 20 0 1 289 1 289 0.0 550
Msa0382660 MtrunA17_Chr8g0386961 88.070 285 32 1 4 288 3 285 0.0 510
Msa0382660 MtrunA17_Chr5g0397391 84.321 287 43 1 4 290 3 287 3.75e-179 495
Msa0382660 MtrunA17_Chr4g0006001 80.690 290 54 2 1 289 1 289 1.08e-172 479
Msa0382660 MtrunA17_Chr7g0264111 72.481 258 64 2 32 283 16 272 1.14e-135 385
Msa0382660 MtrunA17_Chr3g0145671 71.264 261 74 1 28 288 10 269 5.03e-134 380
Msa0382660 MtrunA17_Chr1g0199731 69.004 271 77 2 19 283 3 272 1.86e-133 379
Msa0382660 MtrunA17_Chr2g0326621 68.182 264 76 2 32 288 17 279 2.78e-132 376
Msa0382660 MtrunA17_Chr4g0029071 65.217 276 89 2 19 288 3 277 2.66e-131 374
Msa0382660 MtrunA17_Chr1g0188771 35.270 241 137 6 55 290 21 247 2.06e-31 117
Msa0382660 MtrunA17_Chr2g0331261 34.615 234 138 5 50 280 15 236 4.00e-31 116
Msa0382660 MtrunA17_Chr6g0478191 37.872 235 130 6 55 285 21 243 4.09e-31 116
Msa0382660 MtrunA17_Chr8g0340161 35.622 233 133 7 50 277 12 232 1.84e-29 112
Msa0382660 MtrunA17_Chr5g0399341 35.841 226 129 5 55 277 19 231 2.85e-29 111
Msa0382660 MtrunA17_Chr4g0030861 34.025 241 136 6 44 277 10 234 3.08e-28 108
Msa0382660 MtrunA17_Chr7g0264961 33.891 239 142 6 45 280 11 236 5.51e-28 108
Msa0382660 MtrunA17_Chr1g0212671 33.871 248 136 8 44 281 10 239 1.11e-27 107
Msa0382660 MtrunA17_Chr1g0146161 32.895 228 138 6 47 273 11 224 5.46e-25 100
Msa0382660 MtrunA17_Chr7g0222791 31.950 241 141 6 44 277 10 234 6.35e-24 97.4
Msa0382660 MtrunA17_Chr1g0146171 31.897 232 127 9 55 277 19 228 3.28e-23 95.5
Msa0382660 MtrunA17_Chr5g0435051 25.969 258 166 6 26 278 9 246 8.44e-19 84.0
Msa0382660 MtrunA17_Chr8g0379901 26.236 263 177 6 26 287 10 256 2.22e-18 82.8
Msa0382660 MtrunA17_Chr2g0284631 29.167 216 131 6 58 270 94 290 1.02e-17 82.0
Msa0382660 MtrunA17_Chr4g0020781 34.021 194 100 7 103 290 29 200 1.10e-17 79.7
Msa0382660 MtrunA17_Chr2g0284591 32.710 214 126 7 58 270 39 235 1.13e-17 80.9
Msa0382660 MtrunA17_Chr4g0001221 28.279 244 147 8 37 280 68 283 1.24e-17 81.3
Msa0382660 MtrunA17_Chr4g0044201 27.434 226 131 6 58 280 38 233 1.34e-17 80.5
Msa0382660 MtrunA17_Chr5g0426131 30.043 233 140 7 50 278 32 245 1.63e-17 80.5
Msa0382660 MtrunA17_Chr4g0038591 30.224 268 151 13 38 282 27 281 1.96e-17 81.3
Msa0382660 MtrunA17_Chr8g0379911 27.074 229 151 5 52 280 35 247 2.60e-17 79.7
Msa0382660 MtrunA17_Chr2g0284611 31.963 219 131 7 53 270 36 237 8.18e-17 78.6
Msa0382660 MtrunA17_Chr7g0217331 27.948 229 146 6 53 280 35 245 1.71e-16 77.8
Msa0382660 MtrunA17_Chr2g0333771 29.279 222 140 6 59 280 84 288 2.36e-16 77.8
Msa0382660 MtrunA17_Chr3g0079421 28.042 189 117 4 92 277 59 231 2.39e-15 74.3
Msa0382660 MtrunA17_Chr4g0038611 29.167 192 120 6 102 282 32 218 7.22e-15 72.8
Msa0382660 MtrunA17_Chr2g0284581 30.093 216 129 6 58 270 41 237 7.46e-15 73.2
Msa0382660 MtrunA17_Chr2g0284601 31.351 185 114 3 86 270 18 189 6.22e-14 69.7
Msa0382660 MtrunA17_Chr1g0184541 26.754 228 142 6 52 275 59 265 9.38e-14 70.1
Msa0382660 MtrunA17_Chr1g0201331 26.126 222 147 6 59 280 78 282 3.40e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382660 AT4G00430.1 84.828 290 41 2 1 290 1 287 2.13e-180 498
Msa0382660 AT2G45960.1 83.448 290 44 2 1 290 1 286 3.63e-177 490
Msa0382660 AT4G23400.1 84.483 290 42 2 1 290 1 287 1.63e-169 471
Msa0382660 AT3G61430.2 83.793 290 43 2 1 290 1 286 2.76e-167 465
Msa0382660 AT3G61430.1 83.793 290 43 2 1 290 1 286 2.76e-167 465
Msa0382660 AT1G01620.1 83.448 290 44 2 1 290 1 286 1.61e-166 463
Msa0382660 AT2G45960.2 83.398 259 39 2 1 259 1 255 4.62e-156 436
Msa0382660 AT2G45960.3 83.398 259 39 2 1 259 1 255 6.57e-155 434
Msa0382660 AT2G37180.1 71.863 263 67 3 32 288 14 275 4.67e-133 379
Msa0382660 AT4G35100.1 71.318 258 73 1 31 288 14 270 2.87e-132 376
Msa0382660 AT4G35100.2 71.318 258 73 1 31 288 14 270 2.87e-132 376
Msa0382660 AT2G37170.2 71.483 263 68 3 32 288 57 318 4.88e-132 377
Msa0382660 AT2G37170.1 71.483 263 68 3 32 288 14 275 5.54e-132 376
Msa0382660 AT3G53420.1 71.483 263 68 3 32 288 16 277 7.63e-132 375
Msa0382660 AT3G53420.2 71.483 263 68 3 32 288 16 277 7.63e-132 375
Msa0382660 AT2G16850.1 69.318 264 80 1 25 288 6 268 1.09e-130 372
Msa0382660 AT3G54820.1 68.679 265 76 2 30 288 13 276 1.53e-130 372
Msa0382660 AT1G01620.2 85.116 215 31 1 76 290 1 214 6.33e-129 365
Msa0382660 AT5G60660.1 68.441 263 76 2 32 288 16 277 4.08e-128 366
Msa0382660 AT2G39010.1 66.792 265 81 2 30 288 13 276 1.56e-127 365
Msa0382660 AT4G00430.2 82.028 217 36 2 1 217 1 214 1.53e-126 359
Msa0382660 AT2G39010.2 62.437 197 67 2 23 213 6 201 6.24e-83 249
Msa0382660 AT3G16240.1 35.498 231 134 5 50 277 14 232 4.30e-31 117
Msa0382660 AT1G73190.1 35.918 245 126 9 55 285 24 251 8.41e-31 116
Msa0382660 AT1G17810.1 35.593 236 130 7 55 281 24 246 1.00e-30 116
Msa0382660 AT5G47450.1 36.638 232 130 7 50 277 14 232 7.09e-30 113
Msa0382660 AT4G01470.1 34.694 245 136 7 45 281 11 239 3.15e-29 112
Msa0382660 AT2G36830.1 35.102 245 132 10 44 279 10 236 1.42e-27 107
Msa0382660 AT3G26520.1 34.335 233 130 7 55 280 22 238 1.96e-26 104
Msa0382660 AT4G17340.1 34.802 227 131 6 55 277 19 232 1.98e-26 104
Msa0382660 AT2G25810.1 33.913 230 134 8 55 281 19 233 3.10e-24 98.6
Msa0382660 AT3G47440.1 32.377 244 122 11 55 281 23 240 4.87e-22 92.8
Msa0382660 AT1G31885.1 29.084 251 149 8 26 270 22 249 9.13e-19 85.1
Msa0382660 AT4G19030.1 27.397 292 185 9 2 288 11 280 1.93e-18 84.0
Msa0382660 AT5G37820.1 29.730 185 113 5 87 269 72 241 3.40e-16 77.4
Msa0382660 AT5G37820.2 29.730 185 113 5 87 269 108 277 3.76e-16 77.8
Msa0382660 AT4G18910.1 28.279 244 160 6 41 280 36 268 2.92e-15 74.7
Msa0382660 AT1G31885.2 28.571 196 122 5 81 270 12 195 9.08e-15 73.2
Msa0382660 AT1G80760.1 26.908 249 162 7 32 280 60 288 9.17e-15 73.6
Msa0382660 AT4G10380.1 25.670 261 162 7 33 278 41 284 1.38e-14 73.2
Msa0382660 AT2G34390.1 25.887 282 182 9 6 280 2 263 3.77e-14 71.6
Msa0382660 AT3G06100.1 27.660 235 147 8 55 285 46 261 8.64e-13 67.4
Msa0382660 AT2G34390.2 27.111 225 150 7 58 280 9 221 1.86e-12 66.2
Msa0382660 AT5G37810.1 26.203 187 117 5 87 269 72 241 3.73e-12 65.9
Msa0382660 AT3G06100.2 27.778 234 143 8 58 288 1 211 3.79e-12 65.1

Find 102 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATTGCTTGGTCTTT+TGG 0.175483 3_1:+85403415 Msa0382660:CDS
AACATCCTTTACATACAAAA+AGG 0.203780 3_1:-85405059 None:intergenic
GTGTAATGATTATTATTATT+AGG 0.263327 3_1:+85405093 Msa0382660:three_prime_UTR
CTGTGGTGCTGGTGTGGTTA+AGG 0.288319 3_1:+85404251 Msa0382660:CDS
AGTGACATTCGGTTTGTTCT+TGG 0.325309 3_1:+85404167 Msa0382660:CDS
ATACCAATTGGTTGTCTCTC+TGG 0.333635 3_1:-85403190 None:intergenic
AGCCTTCTGAGCTCACTTCA+TGG 0.336223 3_1:+85403275 Msa0382660:CDS
TGTGGTGCTGGTGTGGTTAA+GGG 0.341527 3_1:+85404252 Msa0382660:CDS
TTCTGGGTTGGACCATTCAT+TGG 0.343204 3_1:+85404878 Msa0382660:CDS
ATTATCTTCAACAAAGATCT+TGG 0.350263 3_1:+85404730 Msa0382660:CDS
CATCACCATCTTGACTGTTA+TGG 0.358872 3_1:+85403351 Msa0382660:CDS
ATCACCATCTTGACTGTTAT+GGG 0.380729 3_1:+85403352 Msa0382660:CDS
TGTAAAACTGTTGGTATTCA+AGG 0.380854 3_1:+85403397 Msa0382660:CDS
TTGATACCAGTTCCAGTGAT+TGG 0.381840 3_1:-85404682 None:intergenic
GTGGTGAGTGCGTTGGGTGA+TGG 0.383773 3_1:+85405115 Msa0382660:three_prime_UTR
TAAAGAACAAGATGTTTCAT+TGG 0.400740 3_1:+85403153 Msa0382660:CDS
TACTGTACCGCTGGTATCTC+TGG 0.404434 3_1:+85403460 Msa0382660:CDS
CTTGGTGCTATCTGTGGTGC+TGG 0.411516 3_1:+85404240 Msa0382660:CDS
GGTGCTAACTTTGTTGCCCC+TGG 0.413480 3_1:+85404312 Msa0382660:CDS
TACAGGAACGTGGGAGTCTC+TGG 0.414634 3_1:-85404427 None:intergenic
TGATACCAGTTCCAGTGATT+GGG 0.425209 3_1:-85404681 None:intergenic
TCATGGTCTTTCTACAGAGC+TGG 0.430662 3_1:+85403292 Msa0382660:CDS
CAAAACCAAGCCAACTTTGT+GGG 0.437982 3_1:+85404997 Msa0382660:three_prime_UTR
ATCAACCCTGCTAGGAGTCT+TGG 0.440510 3_1:+85404700 Msa0382660:CDS
GTTGCCCCTGGTTACACTAA+AGG 0.441082 3_1:+85404324 Msa0382660:CDS
GGAGTCTCTGGCGCTACGCT+TGG 0.442884 3_1:-85404415 None:intergenic
TCTTCAACAAAGATCTTGGT+TGG 0.452168 3_1:+85404734 Msa0382660:CDS
TGTAGTCCTTTCCATCATCA+TGG 0.459789 3_1:-85403225 None:intergenic
AGTTCCAGTGATTGGGATAG+TGG 0.463096 3_1:-85404674 None:intergenic
ACTATCCCAATCACTGGAAC+TGG 0.463239 3_1:+85404676 Msa0382660:CDS
TATTAGGTGGTGAGTGCGTT+GGG 0.463704 3_1:+85405109 Msa0382660:three_prime_UTR
TAAAACCCACAAAGTTGGCT+TGG 0.466445 3_1:-85405002 None:intergenic
AAAGAACAAGATGTTTCATT+GGG 0.468564 3_1:+85403154 Msa0382660:CDS
TACCAATTGGTTGTCTCTCT+GGG 0.469628 3_1:-85403189 None:intergenic
TGGTGAGTGCGTTGGGTGAT+GGG 0.469893 3_1:+85405116 Msa0382660:three_prime_UTR
AACCAGAGCTTTGTTCTACA+TGG 0.473495 3_1:+85404206 Msa0382660:CDS
CTCTGAGCTGCAATACCAAT+TGG 0.474372 3_1:-85403202 None:intergenic
AACAAACCGAATGTCACTGC+TGG 0.475621 3_1:-85404162 None:intergenic
AGCTGGGATAGCTGAGTTTG+TGG 0.478196 3_1:+85403309 Msa0382660:CDS
TAAAATAAAACCCACAAAGT+TGG 0.480980 3_1:-85405007 None:intergenic
CAACAATACATCACCACACA+TGG 0.480995 3_1:-85405186 None:intergenic
GAAATAATTAAAACCAGATA+AGG 0.484007 3_1:-85405036 None:intergenic
AATTAATTACTTGACTTGAA+AGG 0.484353 3_1:-85404947 None:intergenic
AGCTCAGAAGGCTCAAACAA+TGG 0.493164 3_1:-85403265 None:intergenic
GCTCTTGTTTACTGTACCGC+TGG 0.502006 3_1:+85403451 Msa0382660:CDS
ATTACTTGACTTGAAAGGAA+TGG 0.503755 3_1:-85404942 None:intergenic
CATCAAAGATCACAAACCGT+TGG 0.506404 3_1:-85404974 None:intergenic
TGCTATCTGTGGTGCTGGTG+TGG 0.507082 3_1:+85404245 Msa0382660:CDS
GGCGCTACGCTTGGCATCAG+TGG 0.507135 3_1:-85404406 None:intergenic
GACCATGAAGTGAGCTCAGA+AGG 0.508065 3_1:-85403277 None:intergenic
CCATCACCTTTAGTGTAACC+AGG 0.509306 3_1:-85404330 None:intergenic
TTGGTATTCAAGGAATTGCT+TGG 0.510082 3_1:+85403407 Msa0382660:CDS
GGACTTGGTGCTGAGATTGT+TGG 0.510762 3_1:+85404351 Msa0382660:CDS
ATATGAATATTAAGTGGTTG+AGG 0.512954 3_1:-85403083 None:intergenic
CATTCGGTTTGTTCTTGGCA+AGG 0.513044 3_1:+85404172 Msa0382660:CDS
ATAAACCCAGCAGTGACATT+CGG 0.513323 3_1:+85404156 Msa0382660:CDS
GAAGGCTCAAACAATGGTGC+TGG 0.515315 3_1:-85403259 None:intergenic
GGCATCAGTGGCGGAGAAGA+CGG 0.517403 3_1:-85404394 None:intergenic
TCAAACAATGGTGCTGGTGG+TGG 0.535198 3_1:-85403253 None:intergenic
ATATTCCAACTTAAAAGTAA+TGG 0.536522 3_1:-85405147 None:intergenic
CATGGTCTTTCTACAGAGCT+GGG 0.538255 3_1:+85403293 Msa0382660:CDS
TTCCCAGAGAGACAACCAAT+TGG 0.543575 3_1:+85403187 Msa0382660:CDS
GCAAAACCAAGCCAACTTTG+TGG 0.545823 3_1:+85404996 Msa0382660:three_prime_UTR
TTGGCCACTATCCCAATCAC+TGG 0.548120 3_1:+85404670 Msa0382660:CDS
GCAGCACCAAGACTCCTAGC+AGG 0.553150 3_1:-85404706 None:intergenic
ATACATCACCACACATGGGT+AGG 0.557334 3_1:-85405181 None:intergenic
AAGTAATTAATTTAATCCAA+CGG 0.563313 3_1:+85404958 Msa0382660:exon
TTATTAGGTGGTGAGTGCGT+TGG 0.563840 3_1:+85405108 Msa0382660:three_prime_UTR
CACCATGTAGAACAAAGCTC+TGG 0.564057 3_1:-85404208 None:intergenic
TAATGATTATTATTATTAGG+TGG 0.567044 3_1:+85405096 Msa0382660:three_prime_UTR
CAAACCCTTGGTGCTATCTG+TGG 0.570105 3_1:+85404234 Msa0382660:CDS
TGCTGAATATGAATATTAAG+TGG 0.572314 3_1:-85403089 None:intergenic
AACACCCATAACAGTCAAGA+TGG 0.578675 3_1:-85403356 None:intergenic
CCTGGTTACACTAAAGGTGA+TGG 0.579850 3_1:+85404330 Msa0382660:CDS
ACAGCGAACCCAATTGGCAG+TGG 0.580895 3_1:-85404634 None:intergenic
ACAAAGAGAGTGAGCTATGG+AGG 0.581560 3_1:+85403129 Msa0382660:exon
GCAGCTCAGAGCCATGATGA+TGG 0.583683 3_1:+85403214 Msa0382660:CDS
GAGTCTAAGTGTAAAACTGT+TGG 0.586868 3_1:+85403388 Msa0382660:CDS
TCAGAGCCATGATGATGGAA+AGG 0.586889 3_1:+85403219 Msa0382660:CDS
TACATCACCACACATGGGTA+GGG 0.587144 3_1:-85405180 None:intergenic
GAACTGGTATCAACCCTGCT+AGG 0.594160 3_1:+85404692 Msa0382660:CDS
GCAAGTGCTGCACCAATGAA+TGG 0.597918 3_1:-85404890 None:intergenic
GATGTACAAGAACAGAAAAG+TGG 0.604407 3_1:-85403332 None:intergenic
TCAACAAAGAGAGTGAGCTA+TGG 0.609619 3_1:+85403126 Msa0382660:exon
GGCTCAAACAATGGTGCTGG+TGG 0.611815 3_1:-85403256 None:intergenic
GCTACGCTTGGCATCAGTGG+CGG 0.612401 3_1:-85404403 None:intergenic
TACATGGTGATGCAAACCCT+TGG 0.617795 3_1:+85404222 Msa0382660:CDS
ACAAACCGAATGTCACTGCT+GGG 0.620561 3_1:-85404161 None:intergenic
TGATGATGGAAAGGACTACA+AGG 0.623530 3_1:+85403228 Msa0382660:CDS
CATCACCTTTAGTGTAACCA+GGG 0.631898 3_1:-85404329 None:intergenic
AGCACCACAGATAGCACCAA+GGG 0.640603 3_1:-85404238 None:intergenic
TACACTAAAGGTGATGGACT+TGG 0.640675 3_1:+85404336 Msa0382660:CDS
CAGCACCAAGACTCCTAGCA+GGG 0.643712 3_1:-85404705 None:intergenic
GACGGTGTAGACAAGAACAA+AGG 0.671387 3_1:-85404376 None:intergenic
AACAATACATCACCACACAT+GGG 0.672623 3_1:-85405185 None:intergenic
GTTAGGGACATACAGGAACG+TGG 0.684093 3_1:-85404437 None:intergenic
TTAGGGACATACAGGAACGT+GGG 0.697760 3_1:-85404436 None:intergenic
TCACAAACCCTACCCATGTG+TGG 0.706621 3_1:+85405173 Msa0382660:three_prime_UTR
ATCACCTTTAGTGTAACCAG+GGG 0.709414 3_1:-85404328 None:intergenic
CAGCACCACAGATAGCACCA+AGG 0.733918 3_1:-85404239 None:intergenic
TGGCTCTGATCACAACTGTG+TGG 0.744394 3_1:-85404922 None:intergenic
ATACATACCAGAGATACCAG+CGG 0.782739 3_1:-85403467 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGTAATACTAATTATTT+AGG + chr3_1:85403558-85403577 Msa0382660:intron 10.0%
!! ATATATTTCAATTTCAATTA+GGG - chr3_1:85404549-85404568 None:intergenic 10.0%
!! AATATATTTCAATTTCAATT+AGG - chr3_1:85404550-85404569 None:intergenic 10.0%
!! TATAGTAATACTAATTATTT+AGG + chr3_1:85403558-85403577 Msa0382660:intron 10.0%
!! ATATATTTCAATTTCAATTA+GGG - chr3_1:85404549-85404568 None:intergenic 10.0%
!! AATATATTTCAATTTCAATT+AGG - chr3_1:85404550-85404569 None:intergenic 10.0%
!!! AATTTTGTTACTAAATTTCA+TGG - chr3_1:85403515-85403534 None:intergenic 15.0%
!! AAGTAATTAATTTAATCCAA+CGG + chr3_1:85404958-85404977 Msa0382660:exon 15.0%
!! GTGTAATGATTATTATTATT+AGG + chr3_1:85405093-85405112 Msa0382660:three_prime_UTR 15.0%
!! TAATGATTATTATTATTAGG+TGG + chr3_1:85405096-85405115 Msa0382660:three_prime_UTR 15.0%
!!! AATTTTGTTACTAAATTTCA+TGG - chr3_1:85403515-85403534 None:intergenic 15.0%
!! AAGTAATTAATTTAATCCAA+CGG + chr3_1:85404958-85404977 Msa0382660:exon 15.0%
!! GTGTAATGATTATTATTATT+AGG + chr3_1:85405093-85405112 Msa0382660:three_prime_UTR 15.0%
!! TAATGATTATTATTATTAGG+TGG + chr3_1:85405096-85405115 Msa0382660:three_prime_UTR 15.0%
!!! GTAACTTTGTTTTTTTTCTT+TGG + chr3_1:85403580-85403599 Msa0382660:intron 20.0%
!!! AACACTAAATATTTTTGATG+TGG - chr3_1:85404058-85404077 None:intergenic 20.0%
!! GTAACAGTAATGATTTATTA+TGG + chr3_1:85404098-85404117 Msa0382660:intron 20.0%
!!! TTTTCTGCATTATTAGATTT+TGG + chr3_1:85404609-85404628 Msa0382660:intron 20.0%
!!! AATTAATTACTTGACTTGAA+AGG - chr3_1:85404950-85404969 None:intergenic 20.0%
!!! TATTTTATTTGATCCTTATC+TGG + chr3_1:85405023-85405042 Msa0382660:three_prime_UTR 20.0%
!! GAAATAATTAAAACCAGATA+AGG - chr3_1:85405039-85405058 None:intergenic 20.0%
!! ATATTCCAACTTAAAAGTAA+TGG - chr3_1:85405150-85405169 None:intergenic 20.0%
!!! ATTACTTTTAAGTTGGAATA+TGG + chr3_1:85405149-85405168 Msa0382660:three_prime_UTR 20.0%
!!! GTAACTTTGTTTTTTTTCTT+TGG + chr3_1:85403580-85403599 Msa0382660:intron 20.0%
!!! AACACTAAATATTTTTGATG+TGG - chr3_1:85404058-85404077 None:intergenic 20.0%
!! GTAACAGTAATGATTTATTA+TGG + chr3_1:85404098-85404117 Msa0382660:intron 20.0%
!!! TTTTCTGCATTATTAGATTT+TGG + chr3_1:85404609-85404628 Msa0382660:intron 20.0%
!!! AATTAATTACTTGACTTGAA+AGG - chr3_1:85404950-85404969 None:intergenic 20.0%
!!! TATTTTATTTGATCCTTATC+TGG + chr3_1:85405023-85405042 Msa0382660:three_prime_UTR 20.0%
!! GAAATAATTAAAACCAGATA+AGG - chr3_1:85405039-85405058 None:intergenic 20.0%
!! ATATTCCAACTTAAAAGTAA+TGG - chr3_1:85405150-85405169 None:intergenic 20.0%
!!! ATTACTTTTAAGTTGGAATA+TGG + chr3_1:85405149-85405168 Msa0382660:three_prime_UTR 20.0%
! ATATGAATATTAAGTGGTTG+AGG - chr3_1:85403086-85403105 None:intergenic 25.0%
! TGCTGAATATGAATATTAAG+TGG - chr3_1:85403092-85403111 None:intergenic 25.0%
! TAAAGAACAAGATGTTTCAT+TGG + chr3_1:85403153-85403172 Msa0382660:CDS 25.0%
! AAAGAACAAGATGTTTCATT+GGG + chr3_1:85403154-85403173 Msa0382660:CDS 25.0%
!!! CTTTAGAACAAATTAGTACT+AGG - chr3_1:85403613-85403632 None:intergenic 25.0%
! ATTACCATAATACATGATGA+AGG + chr3_1:85403861-85403880 Msa0382660:intron 25.0%
! AATTCCTTCATCATGTATTA+TGG - chr3_1:85403868-85403887 None:intergenic 25.0%
! GGTACTAATATGTAATGTTA+TGG + chr3_1:85404119-85404138 Msa0382660:intron 25.0%
! ATTATCTTCAACAAAGATCT+TGG + chr3_1:85404730-85404749 Msa0382660:CDS 25.0%
! ACTGCACATAAAAAATGATA+AGG - chr3_1:85404853-85404872 None:intergenic 25.0%
!!! TTATCATTTTTTATGTGCAG+TGG + chr3_1:85404852-85404871 Msa0382660:intron 25.0%
! TAAAATAAAACCCACAAAGT+TGG - chr3_1:85405010-85405029 None:intergenic 25.0%
!! ATTTCCCTTTTTGTATGTAA+AGG + chr3_1:85405054-85405073 Msa0382660:three_prime_UTR 25.0%
! ACATCCTTTACATACAAAAA+GGG - chr3_1:85405061-85405080 None:intergenic 25.0%
! AACATCCTTTACATACAAAA+AGG - chr3_1:85405062-85405081 None:intergenic 25.0%
!!! GTTTTCCATTACTTTTAAGT+TGG + chr3_1:85405142-85405161 Msa0382660:three_prime_UTR 25.0%
! ATATGAATATTAAGTGGTTG+AGG - chr3_1:85403086-85403105 None:intergenic 25.0%
! TGCTGAATATGAATATTAAG+TGG - chr3_1:85403092-85403111 None:intergenic 25.0%
! TAAAGAACAAGATGTTTCAT+TGG + chr3_1:85403153-85403172 Msa0382660:CDS 25.0%
! AAAGAACAAGATGTTTCATT+GGG + chr3_1:85403154-85403173 Msa0382660:CDS 25.0%
!!! CTTTAGAACAAATTAGTACT+AGG - chr3_1:85403613-85403632 None:intergenic 25.0%
! ATTACCATAATACATGATGA+AGG + chr3_1:85403861-85403880 Msa0382660:intron 25.0%
! AATTCCTTCATCATGTATTA+TGG - chr3_1:85403868-85403887 None:intergenic 25.0%
! GGTACTAATATGTAATGTTA+TGG + chr3_1:85404119-85404138 Msa0382660:intron 25.0%
! ATTATCTTCAACAAAGATCT+TGG + chr3_1:85404730-85404749 Msa0382660:CDS 25.0%
! ACTGCACATAAAAAATGATA+AGG - chr3_1:85404853-85404872 None:intergenic 25.0%
!!! TTATCATTTTTTATGTGCAG+TGG + chr3_1:85404852-85404871 Msa0382660:intron 25.0%
! TAAAATAAAACCCACAAAGT+TGG - chr3_1:85405010-85405029 None:intergenic 25.0%
!! ATTTCCCTTTTTGTATGTAA+AGG + chr3_1:85405054-85405073 Msa0382660:three_prime_UTR 25.0%
! ACATCCTTTACATACAAAAA+GGG - chr3_1:85405061-85405080 None:intergenic 25.0%
! AACATCCTTTACATACAAAA+AGG - chr3_1:85405062-85405081 None:intergenic 25.0%
!!! GTTTTCCATTACTTTTAAGT+TGG + chr3_1:85405142-85405161 Msa0382660:three_prime_UTR 25.0%
TGTAAAACTGTTGGTATTCA+AGG + chr3_1:85403397-85403416 Msa0382660:CDS 30.0%
ATATGTAATGTTATGGATGC+AGG + chr3_1:85404126-85404145 Msa0382660:intron 30.0%
TATGTAATGTTATGGATGCA+GGG + chr3_1:85404127-85404146 Msa0382660:intron 30.0%
ACTTTCTACACCAACAAAAA+TGG + chr3_1:85404288-85404307 Msa0382660:CDS 30.0%
AAACATGAACTCAACAGTTA+GGG - chr3_1:85404456-85404475 None:intergenic 30.0%
TAAACATGAACTCAACAGTT+AGG - chr3_1:85404457-85404476 None:intergenic 30.0%
ATGGTAGTTTATCGAAATCA+CGG - chr3_1:85404513-85404532 None:intergenic 30.0%
! ATTACTTGACTTGAAAGGAA+TGG - chr3_1:85404945-85404964 None:intergenic 30.0%
TGTAAAACTGTTGGTATTCA+AGG + chr3_1:85403397-85403416 Msa0382660:CDS 30.0%
ATATGTAATGTTATGGATGC+AGG + chr3_1:85404126-85404145 Msa0382660:intron 30.0%
TATGTAATGTTATGGATGCA+GGG + chr3_1:85404127-85404146 Msa0382660:intron 30.0%
ACTTTCTACACCAACAAAAA+TGG + chr3_1:85404288-85404307 Msa0382660:CDS 30.0%
AAACATGAACTCAACAGTTA+GGG - chr3_1:85404456-85404475 None:intergenic 30.0%
TAAACATGAACTCAACAGTT+AGG - chr3_1:85404457-85404476 None:intergenic 30.0%
ATGGTAGTTTATCGAAATCA+CGG - chr3_1:85404513-85404532 None:intergenic 30.0%
! ATTACTTGACTTGAAAGGAA+TGG - chr3_1:85404945-85404964 None:intergenic 30.0%
GATGTACAAGAACAGAAAAG+TGG - chr3_1:85403335-85403354 None:intergenic 35.0%
ATCACCATCTTGACTGTTAT+GGG + chr3_1:85403352-85403371 Msa0382660:CDS 35.0%
GAGTCTAAGTGTAAAACTGT+TGG + chr3_1:85403388-85403407 Msa0382660:CDS 35.0%
TTGGTATTCAAGGAATTGCT+TGG + chr3_1:85403407-85403426 Msa0382660:CDS 35.0%
ATTCCACTAAGAATCGAACT+CGG + chr3_1:85403746-85403765 Msa0382660:intron 35.0%
! GATGAAGGAATTGATAACCT+AGG + chr3_1:85403876-85403895 Msa0382660:intron 35.0%
TTTAGCAACTAGACAAACCT+AGG - chr3_1:85403896-85403915 None:intergenic 35.0%
TTTGTCTAGTTGCTAAAGAC+CGG + chr3_1:85403899-85403918 Msa0382660:intron 35.0%
TCAACGTTCTTTGAATCTTG+AGG + chr3_1:85403987-85404006 Msa0382660:intron 35.0%
AGTTGAGTCTCAGCTAATTA+AGG - chr3_1:85404022-85404041 None:intergenic 35.0%
ATGTAATGTTATGGATGCAG+GGG + chr3_1:85404128-85404147 Msa0382660:intron 35.0%
TTCTACACCAACAAAAATGG+TGG + chr3_1:85404291-85404310 Msa0382660:CDS 35.0%
!! TTAGGGCATGTTTGTTATCA+TGG - chr3_1:85404532-85404551 None:intergenic 35.0%
AAAAATACAGCGAACCCAAT+TGG - chr3_1:85404643-85404662 None:intergenic 35.0%
! AATTGGGTTCGCTGTATTTT+TGG + chr3_1:85404642-85404661 Msa0382660:CDS 35.0%
TCTTCAACAAAGATCTTGGT+TGG + chr3_1:85404734-85404753 Msa0382660:CDS 35.0%
!! TTTATGTGCAGTGGATTTTC+TGG + chr3_1:85404861-85404880 Msa0382660:intron 35.0%
!! TTATGTGCAGTGGATTTTCT+GGG + chr3_1:85404862-85404881 Msa0382660:intron 35.0%
AACAATACATCACCACACAT+GGG - chr3_1:85405188-85405207 None:intergenic 35.0%
GATGTACAAGAACAGAAAAG+TGG - chr3_1:85403335-85403354 None:intergenic 35.0%
ATCACCATCTTGACTGTTAT+GGG + chr3_1:85403352-85403371 Msa0382660:CDS 35.0%
GAGTCTAAGTGTAAAACTGT+TGG + chr3_1:85403388-85403407 Msa0382660:CDS 35.0%
TTGGTATTCAAGGAATTGCT+TGG + chr3_1:85403407-85403426 Msa0382660:CDS 35.0%
ATTCCACTAAGAATCGAACT+CGG + chr3_1:85403746-85403765 Msa0382660:intron 35.0%
! GATGAAGGAATTGATAACCT+AGG + chr3_1:85403876-85403895 Msa0382660:intron 35.0%
TTTAGCAACTAGACAAACCT+AGG - chr3_1:85403896-85403915 None:intergenic 35.0%
TTTGTCTAGTTGCTAAAGAC+CGG + chr3_1:85403899-85403918 Msa0382660:intron 35.0%
TCAACGTTCTTTGAATCTTG+AGG + chr3_1:85403987-85404006 Msa0382660:intron 35.0%
AGTTGAGTCTCAGCTAATTA+AGG - chr3_1:85404022-85404041 None:intergenic 35.0%
ATGTAATGTTATGGATGCAG+GGG + chr3_1:85404128-85404147 Msa0382660:intron 35.0%
TTCTACACCAACAAAAATGG+TGG + chr3_1:85404291-85404310 Msa0382660:CDS 35.0%
!! TTAGGGCATGTTTGTTATCA+TGG - chr3_1:85404532-85404551 None:intergenic 35.0%
AAAAATACAGCGAACCCAAT+TGG - chr3_1:85404643-85404662 None:intergenic 35.0%
! AATTGGGTTCGCTGTATTTT+TGG + chr3_1:85404642-85404661 Msa0382660:CDS 35.0%
TCTTCAACAAAGATCTTGGT+TGG + chr3_1:85404734-85404753 Msa0382660:CDS 35.0%
!! TTTATGTGCAGTGGATTTTC+TGG + chr3_1:85404861-85404880 Msa0382660:intron 35.0%
!! TTATGTGCAGTGGATTTTCT+GGG + chr3_1:85404862-85404881 Msa0382660:intron 35.0%
AACAATACATCACCACACAT+GGG - chr3_1:85405188-85405207 None:intergenic 35.0%
TCAACAAAGAGAGTGAGCTA+TGG + chr3_1:85403126-85403145 Msa0382660:exon 40.0%
TACCAATTGGTTGTCTCTCT+GGG - chr3_1:85403192-85403211 None:intergenic 40.0%
ATACCAATTGGTTGTCTCTC+TGG - chr3_1:85403193-85403212 None:intergenic 40.0%
TGTAGTCCTTTCCATCATCA+TGG - chr3_1:85403228-85403247 None:intergenic 40.0%
!! TGATGATGGAAAGGACTACA+AGG + chr3_1:85403228-85403247 Msa0382660:CDS 40.0%
CATCACCATCTTGACTGTTA+TGG + chr3_1:85403351-85403370 Msa0382660:CDS 40.0%
AACACCCATAACAGTCAAGA+TGG - chr3_1:85403359-85403378 None:intergenic 40.0%
!! CAAGGAATTGCTTGGTCTTT+TGG + chr3_1:85403415-85403434 Msa0382660:CDS 40.0%
ATACATACCAGAGATACCAG+CGG - chr3_1:85403470-85403489 None:intergenic 40.0%
AATCCGAGTTCGATTCTTAG+TGG - chr3_1:85403752-85403771 None:intergenic 40.0%
GAGTTGAACTCAAACCCTTA+TGG - chr3_1:85403933-85403952 None:intergenic 40.0%
TTTGAATCTTGAGGTCTGAC+TGG + chr3_1:85403996-85404015 Msa0382660:intron 40.0%
TGTAATGTTATGGATGCAGG+GGG + chr3_1:85404129-85404148 Msa0382660:intron 40.0%
ATAAACCCAGCAGTGACATT+CGG + chr3_1:85404156-85404175 Msa0382660:CDS 40.0%
! AGTGACATTCGGTTTGTTCT+TGG + chr3_1:85404167-85404186 Msa0382660:CDS 40.0%
!! AACCAGAGCTTTGTTCTACA+TGG + chr3_1:85404206-85404225 Msa0382660:CDS 40.0%
!! GTTAGCACCACCATTTTTGT+TGG - chr3_1:85404301-85404320 None:intergenic 40.0%
ATCACCTTTAGTGTAACCAG+GGG - chr3_1:85404331-85404350 None:intergenic 40.0%
CATCACCTTTAGTGTAACCA+GGG - chr3_1:85404332-85404351 None:intergenic 40.0%
!! TACACTAAAGGTGATGGACT+TGG + chr3_1:85404336-85404355 Msa0382660:CDS 40.0%
!!! CGCTGTATTTTTGGTGCATT+TGG + chr3_1:85404651-85404670 Msa0382660:CDS 40.0%
TGATACCAGTTCCAGTGATT+GGG - chr3_1:85404684-85404703 None:intergenic 40.0%
TTGATACCAGTTCCAGTGAT+TGG - chr3_1:85404685-85404704 None:intergenic 40.0%
CATCAAAGATCACAAACCGT+TGG - chr3_1:85404977-85404996 None:intergenic 40.0%
CAAAACCAAGCCAACTTTGT+GGG + chr3_1:85404997-85405016 Msa0382660:three_prime_UTR 40.0%
TAAAACCCACAAAGTTGGCT+TGG - chr3_1:85405005-85405024 None:intergenic 40.0%
CAACAATACATCACCACACA+TGG - chr3_1:85405189-85405208 None:intergenic 40.0%
TCAACAAAGAGAGTGAGCTA+TGG + chr3_1:85403126-85403145 Msa0382660:exon 40.0%
TACCAATTGGTTGTCTCTCT+GGG - chr3_1:85403192-85403211 None:intergenic 40.0%
ATACCAATTGGTTGTCTCTC+TGG - chr3_1:85403193-85403212 None:intergenic 40.0%
TGTAGTCCTTTCCATCATCA+TGG - chr3_1:85403228-85403247 None:intergenic 40.0%
!! TGATGATGGAAAGGACTACA+AGG + chr3_1:85403228-85403247 Msa0382660:CDS 40.0%
CATCACCATCTTGACTGTTA+TGG + chr3_1:85403351-85403370 Msa0382660:CDS 40.0%
AACACCCATAACAGTCAAGA+TGG - chr3_1:85403359-85403378 None:intergenic 40.0%
!! CAAGGAATTGCTTGGTCTTT+TGG + chr3_1:85403415-85403434 Msa0382660:CDS 40.0%
ATACATACCAGAGATACCAG+CGG - chr3_1:85403470-85403489 None:intergenic 40.0%
AATCCGAGTTCGATTCTTAG+TGG - chr3_1:85403752-85403771 None:intergenic 40.0%
GAGTTGAACTCAAACCCTTA+TGG - chr3_1:85403933-85403952 None:intergenic 40.0%
TTTGAATCTTGAGGTCTGAC+TGG + chr3_1:85403996-85404015 Msa0382660:intron 40.0%
TGTAATGTTATGGATGCAGG+GGG + chr3_1:85404129-85404148 Msa0382660:intron 40.0%
ATAAACCCAGCAGTGACATT+CGG + chr3_1:85404156-85404175 Msa0382660:CDS 40.0%
! AGTGACATTCGGTTTGTTCT+TGG + chr3_1:85404167-85404186 Msa0382660:CDS 40.0%
!! AACCAGAGCTTTGTTCTACA+TGG + chr3_1:85404206-85404225 Msa0382660:CDS 40.0%
!! GTTAGCACCACCATTTTTGT+TGG - chr3_1:85404301-85404320 None:intergenic 40.0%
ATCACCTTTAGTGTAACCAG+GGG - chr3_1:85404331-85404350 None:intergenic 40.0%
CATCACCTTTAGTGTAACCA+GGG - chr3_1:85404332-85404351 None:intergenic 40.0%
!! TACACTAAAGGTGATGGACT+TGG + chr3_1:85404336-85404355 Msa0382660:CDS 40.0%
!!! CGCTGTATTTTTGGTGCATT+TGG + chr3_1:85404651-85404670 Msa0382660:CDS 40.0%
TGATACCAGTTCCAGTGATT+GGG - chr3_1:85404684-85404703 None:intergenic 40.0%
TTGATACCAGTTCCAGTGAT+TGG - chr3_1:85404685-85404704 None:intergenic 40.0%
CATCAAAGATCACAAACCGT+TGG - chr3_1:85404977-85404996 None:intergenic 40.0%
CAAAACCAAGCCAACTTTGT+GGG + chr3_1:85404997-85405016 Msa0382660:three_prime_UTR 40.0%
TAAAACCCACAAAGTTGGCT+TGG - chr3_1:85405005-85405024 None:intergenic 40.0%
CAACAATACATCACCACACA+TGG - chr3_1:85405189-85405208 None:intergenic 40.0%
ACAAAGAGAGTGAGCTATGG+AGG + chr3_1:85403129-85403148 Msa0382660:exon 45.0%
TTCCCAGAGAGACAACCAAT+TGG + chr3_1:85403187-85403206 Msa0382660:CDS 45.0%
CTCTGAGCTGCAATACCAAT+TGG - chr3_1:85403205-85403224 None:intergenic 45.0%
!! TCAGAGCCATGATGATGGAA+AGG + chr3_1:85403219-85403238 Msa0382660:CDS 45.0%
AGCTCAGAAGGCTCAAACAA+TGG - chr3_1:85403268-85403287 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG + chr3_1:85403292-85403311 Msa0382660:CDS 45.0%
CATGGTCTTTCTACAGAGCT+GGG + chr3_1:85403293-85403312 Msa0382660:CDS 45.0%
!! GGAATTGCTTGGTCTTTTGG+TGG + chr3_1:85403418-85403437 Msa0382660:CDS 45.0%
AACCCTTATGGAGTATGAGC+CGG - chr3_1:85403921-85403940 None:intergenic 45.0%
CAACTCTTGCTCATAGAGCA+AGG + chr3_1:85403947-85403966 Msa0382660:intron 45.0%
ACAAACCGAATGTCACTGCT+GGG - chr3_1:85404164-85404183 None:intergenic 45.0%
AACAAACCGAATGTCACTGC+TGG - chr3_1:85404165-85404184 None:intergenic 45.0%
! CATTCGGTTTGTTCTTGGCA+AGG + chr3_1:85404172-85404191 Msa0382660:CDS 45.0%
CACCATGTAGAACAAAGCTC+TGG - chr3_1:85404211-85404230 None:intergenic 45.0%
! TACATGGTGATGCAAACCCT+TGG + chr3_1:85404222-85404241 Msa0382660:CDS 45.0%
! TGGTGTGGTTAAGGGTTTTG+AGG + chr3_1:85404260-85404279 Msa0382660:CDS 45.0%
!! GGTGTGGTTAAGGGTTTTGA+GGG + chr3_1:85404261-85404280 Msa0382660:CDS 45.0%
CCATCACCTTTAGTGTAACC+AGG - chr3_1:85404333-85404352 None:intergenic 45.0%
CCTGGTTACACTAAAGGTGA+TGG + chr3_1:85404330-85404349 Msa0382660:CDS 45.0%
GACGGTGTAGACAAGAACAA+AGG - chr3_1:85404379-85404398 None:intergenic 45.0%
TTAGGGACATACAGGAACGT+GGG - chr3_1:85404439-85404458 None:intergenic 45.0%
CTCAACAGTTAGGGACATAC+AGG - chr3_1:85404447-85404466 None:intergenic 45.0%
!!! ATTTTGGCTCCACTGCCAAT+TGG + chr3_1:85404625-85404644 Msa0382660:CDS 45.0%
!!! TTTTGGCTCCACTGCCAATT+GGG + chr3_1:85404626-85404645 Msa0382660:CDS 45.0%
AGTTCCAGTGATTGGGATAG+TGG - chr3_1:85404677-85404696 None:intergenic 45.0%
ACTATCCCAATCACTGGAAC+TGG + chr3_1:85404676-85404695 Msa0382660:CDS 45.0%
! TTCTGGGTTGGACCATTCAT+TGG + chr3_1:85404878-85404897 Msa0382660:CDS 45.0%
GCAAAACCAAGCCAACTTTG+TGG + chr3_1:85404996-85405015 Msa0382660:three_prime_UTR 45.0%
TTATTAGGTGGTGAGTGCGT+TGG + chr3_1:85405108-85405127 Msa0382660:three_prime_UTR 45.0%
TATTAGGTGGTGAGTGCGTT+GGG + chr3_1:85405109-85405128 Msa0382660:three_prime_UTR 45.0%
TACATCACCACACATGGGTA+GGG - chr3_1:85405183-85405202 None:intergenic 45.0%
ATACATCACCACACATGGGT+AGG - chr3_1:85405184-85405203 None:intergenic 45.0%
ACAAAGAGAGTGAGCTATGG+AGG + chr3_1:85403129-85403148 Msa0382660:exon 45.0%
TTCCCAGAGAGACAACCAAT+TGG + chr3_1:85403187-85403206 Msa0382660:CDS 45.0%
CTCTGAGCTGCAATACCAAT+TGG - chr3_1:85403205-85403224 None:intergenic 45.0%
!! TCAGAGCCATGATGATGGAA+AGG + chr3_1:85403219-85403238 Msa0382660:CDS 45.0%
AGCTCAGAAGGCTCAAACAA+TGG - chr3_1:85403268-85403287 None:intergenic 45.0%
TCATGGTCTTTCTACAGAGC+TGG + chr3_1:85403292-85403311 Msa0382660:CDS 45.0%
CATGGTCTTTCTACAGAGCT+GGG + chr3_1:85403293-85403312 Msa0382660:CDS 45.0%
!! GGAATTGCTTGGTCTTTTGG+TGG + chr3_1:85403418-85403437 Msa0382660:CDS 45.0%
AACCCTTATGGAGTATGAGC+CGG - chr3_1:85403921-85403940 None:intergenic 45.0%
CAACTCTTGCTCATAGAGCA+AGG + chr3_1:85403947-85403966 Msa0382660:intron 45.0%
ACAAACCGAATGTCACTGCT+GGG - chr3_1:85404164-85404183 None:intergenic 45.0%
AACAAACCGAATGTCACTGC+TGG - chr3_1:85404165-85404184 None:intergenic 45.0%
! CATTCGGTTTGTTCTTGGCA+AGG + chr3_1:85404172-85404191 Msa0382660:CDS 45.0%
CACCATGTAGAACAAAGCTC+TGG - chr3_1:85404211-85404230 None:intergenic 45.0%
! TACATGGTGATGCAAACCCT+TGG + chr3_1:85404222-85404241 Msa0382660:CDS 45.0%
! TGGTGTGGTTAAGGGTTTTG+AGG + chr3_1:85404260-85404279 Msa0382660:CDS 45.0%
!! GGTGTGGTTAAGGGTTTTGA+GGG + chr3_1:85404261-85404280 Msa0382660:CDS 45.0%
CCATCACCTTTAGTGTAACC+AGG - chr3_1:85404333-85404352 None:intergenic 45.0%
CCTGGTTACACTAAAGGTGA+TGG + chr3_1:85404330-85404349 Msa0382660:CDS 45.0%
GACGGTGTAGACAAGAACAA+AGG - chr3_1:85404379-85404398 None:intergenic 45.0%
TTAGGGACATACAGGAACGT+GGG - chr3_1:85404439-85404458 None:intergenic 45.0%
CTCAACAGTTAGGGACATAC+AGG - chr3_1:85404447-85404466 None:intergenic 45.0%
!!! ATTTTGGCTCCACTGCCAAT+TGG + chr3_1:85404625-85404644 Msa0382660:CDS 45.0%
!!! TTTTGGCTCCACTGCCAATT+GGG + chr3_1:85404626-85404645 Msa0382660:CDS 45.0%
AGTTCCAGTGATTGGGATAG+TGG - chr3_1:85404677-85404696 None:intergenic 45.0%
ACTATCCCAATCACTGGAAC+TGG + chr3_1:85404676-85404695 Msa0382660:CDS 45.0%
! TTCTGGGTTGGACCATTCAT+TGG + chr3_1:85404878-85404897 Msa0382660:CDS 45.0%
GCAAAACCAAGCCAACTTTG+TGG + chr3_1:85404996-85405015 Msa0382660:three_prime_UTR 45.0%
TTATTAGGTGGTGAGTGCGT+TGG + chr3_1:85405108-85405127 Msa0382660:three_prime_UTR 45.0%
TATTAGGTGGTGAGTGCGTT+GGG + chr3_1:85405109-85405128 Msa0382660:three_prime_UTR 45.0%
TACATCACCACACATGGGTA+GGG - chr3_1:85405183-85405202 None:intergenic 45.0%
ATACATCACCACACATGGGT+AGG - chr3_1:85405184-85405203 None:intergenic 45.0%
!!! TTAATTATAATACTTTTATT+TGG + chr3_1:85404076-85404095 Msa0382660:intron 5.0%
!!! TTAATTATAATACTTTTATT+TGG + chr3_1:85404076-85404095 Msa0382660:intron 5.0%
!! TCAAACAATGGTGCTGGTGG+TGG - chr3_1:85403256-85403275 None:intergenic 50.0%
GAAGGCTCAAACAATGGTGC+TGG - chr3_1:85403262-85403281 None:intergenic 50.0%
AGCCTTCTGAGCTCACTTCA+TGG + chr3_1:85403275-85403294 Msa0382660:CDS 50.0%
GACCATGAAGTGAGCTCAGA+AGG - chr3_1:85403280-85403299 None:intergenic 50.0%
AGCTGGGATAGCTGAGTTTG+TGG + chr3_1:85403309-85403328 Msa0382660:CDS 50.0%
! GCTCTTGTTTACTGTACCGC+TGG + chr3_1:85403451-85403470 Msa0382660:CDS 50.0%
TACTGTACCGCTGGTATCTC+TGG + chr3_1:85403460-85403479 Msa0382660:CDS 50.0%
! AGACCGGCTCATACTCCATA+AGG + chr3_1:85403915-85403934 Msa0382660:intron 50.0%
! GACCGGCTCATACTCCATAA+GGG + chr3_1:85403916-85403935 Msa0382660:intron 50.0%
!! CAAACCCTTGGTGCTATCTG+TGG + chr3_1:85404234-85404253 Msa0382660:CDS 50.0%
AGCACCACAGATAGCACCAA+GGG - chr3_1:85404241-85404260 None:intergenic 50.0%
!! TGTGGTGCTGGTGTGGTTAA+GGG + chr3_1:85404252-85404271 Msa0382660:CDS 50.0%
GTTGCCCCTGGTTACACTAA+AGG + chr3_1:85404324-85404343 Msa0382660:CDS 50.0%
!! GGACTTGGTGCTGAGATTGT+TGG + chr3_1:85404351-85404370 Msa0382660:CDS 50.0%
GTTAGGGACATACAGGAACG+TGG - chr3_1:85404440-85404459 None:intergenic 50.0%
TTGGCCACTATCCCAATCAC+TGG + chr3_1:85404670-85404689 Msa0382660:CDS 50.0%
GAACTGGTATCAACCCTGCT+AGG + chr3_1:85404692-85404711 Msa0382660:CDS 50.0%
ATCAACCCTGCTAGGAGTCT+TGG + chr3_1:85404700-85404719 Msa0382660:CDS 50.0%
!! GTGCAGTGGATTTTCTGGGT+TGG + chr3_1:85404866-85404885 Msa0382660:intron 50.0%
! GCAAGTGCTGCACCAATGAA+TGG - chr3_1:85404893-85404912 None:intergenic 50.0%
!! TGGCTCTGATCACAACTGTG+TGG - chr3_1:85404925-85404944 None:intergenic 50.0%
TCACAAACCCTACCCATGTG+TGG + chr3_1:85405173-85405192 Msa0382660:three_prime_UTR 50.0%
!! TCAAACAATGGTGCTGGTGG+TGG - chr3_1:85403256-85403275 None:intergenic 50.0%
GAAGGCTCAAACAATGGTGC+TGG - chr3_1:85403262-85403281 None:intergenic 50.0%
AGCCTTCTGAGCTCACTTCA+TGG + chr3_1:85403275-85403294 Msa0382660:CDS 50.0%
GACCATGAAGTGAGCTCAGA+AGG - chr3_1:85403280-85403299 None:intergenic 50.0%
AGCTGGGATAGCTGAGTTTG+TGG + chr3_1:85403309-85403328 Msa0382660:CDS 50.0%
! GCTCTTGTTTACTGTACCGC+TGG + chr3_1:85403451-85403470 Msa0382660:CDS 50.0%
TACTGTACCGCTGGTATCTC+TGG + chr3_1:85403460-85403479 Msa0382660:CDS 50.0%
! AGACCGGCTCATACTCCATA+AGG + chr3_1:85403915-85403934 Msa0382660:intron 50.0%
! GACCGGCTCATACTCCATAA+GGG + chr3_1:85403916-85403935 Msa0382660:intron 50.0%
!! CAAACCCTTGGTGCTATCTG+TGG + chr3_1:85404234-85404253 Msa0382660:CDS 50.0%
AGCACCACAGATAGCACCAA+GGG - chr3_1:85404241-85404260 None:intergenic 50.0%
!! TGTGGTGCTGGTGTGGTTAA+GGG + chr3_1:85404252-85404271 Msa0382660:CDS 50.0%
GTTGCCCCTGGTTACACTAA+AGG + chr3_1:85404324-85404343 Msa0382660:CDS 50.0%
!! GGACTTGGTGCTGAGATTGT+TGG + chr3_1:85404351-85404370 Msa0382660:CDS 50.0%
GTTAGGGACATACAGGAACG+TGG - chr3_1:85404440-85404459 None:intergenic 50.0%
TTGGCCACTATCCCAATCAC+TGG + chr3_1:85404670-85404689 Msa0382660:CDS 50.0%
GAACTGGTATCAACCCTGCT+AGG + chr3_1:85404692-85404711 Msa0382660:CDS 50.0%
ATCAACCCTGCTAGGAGTCT+TGG + chr3_1:85404700-85404719 Msa0382660:CDS 50.0%
!! GTGCAGTGGATTTTCTGGGT+TGG + chr3_1:85404866-85404885 Msa0382660:intron 50.0%
! GCAAGTGCTGCACCAATGAA+TGG - chr3_1:85404893-85404912 None:intergenic 50.0%
!! TGGCTCTGATCACAACTGTG+TGG - chr3_1:85404925-85404944 None:intergenic 50.0%
TCACAAACCCTACCCATGTG+TGG + chr3_1:85405173-85405192 Msa0382660:three_prime_UTR 50.0%
GCAGCTCAGAGCCATGATGA+TGG + chr3_1:85403214-85403233 Msa0382660:CDS 55.0%
! GGCTCAAACAATGGTGCTGG+TGG - chr3_1:85403259-85403278 None:intergenic 55.0%
CAGCACCACAGATAGCACCA+AGG - chr3_1:85404242-85404261 None:intergenic 55.0%
!! CTTGGTGCTATCTGTGGTGC+TGG + chr3_1:85404240-85404259 Msa0382660:CDS 55.0%
!! TGCTATCTGTGGTGCTGGTG+TGG + chr3_1:85404245-85404264 Msa0382660:CDS 55.0%
!! CTGTGGTGCTGGTGTGGTTA+AGG + chr3_1:85404251-85404270 Msa0382660:CDS 55.0%
GGTGCTAACTTTGTTGCCCC+TGG + chr3_1:85404312-85404331 Msa0382660:CDS 55.0%
TACAGGAACGTGGGAGTCTC+TGG - chr3_1:85404430-85404449 None:intergenic 55.0%
ACAGCGAACCCAATTGGCAG+TGG - chr3_1:85404637-85404656 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCA+GGG - chr3_1:85404708-85404727 None:intergenic 55.0%
TGGTGAGTGCGTTGGGTGAT+GGG + chr3_1:85405116-85405135 Msa0382660:three_prime_UTR 55.0%
GCAGCTCAGAGCCATGATGA+TGG + chr3_1:85403214-85403233 Msa0382660:CDS 55.0%
! GGCTCAAACAATGGTGCTGG+TGG - chr3_1:85403259-85403278 None:intergenic 55.0%
CAGCACCACAGATAGCACCA+AGG - chr3_1:85404242-85404261 None:intergenic 55.0%
!! CTTGGTGCTATCTGTGGTGC+TGG + chr3_1:85404240-85404259 Msa0382660:CDS 55.0%
!! TGCTATCTGTGGTGCTGGTG+TGG + chr3_1:85404245-85404264 Msa0382660:CDS 55.0%
!! CTGTGGTGCTGGTGTGGTTA+AGG + chr3_1:85404251-85404270 Msa0382660:CDS 55.0%
GGTGCTAACTTTGTTGCCCC+TGG + chr3_1:85404312-85404331 Msa0382660:CDS 55.0%
TACAGGAACGTGGGAGTCTC+TGG - chr3_1:85404430-85404449 None:intergenic 55.0%
ACAGCGAACCCAATTGGCAG+TGG - chr3_1:85404637-85404656 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCA+GGG - chr3_1:85404708-85404727 None:intergenic 55.0%
TGGTGAGTGCGTTGGGTGAT+GGG + chr3_1:85405116-85405135 Msa0382660:three_prime_UTR 55.0%
! GGCATCAGTGGCGGAGAAGA+CGG - chr3_1:85404397-85404416 None:intergenic 60.0%
GCTACGCTTGGCATCAGTGG+CGG - chr3_1:85404406-85404425 None:intergenic 60.0%
GCAGCACCAAGACTCCTAGC+AGG - chr3_1:85404709-85404728 None:intergenic 60.0%
GTGGTGAGTGCGTTGGGTGA+TGG + chr3_1:85405115-85405134 Msa0382660:three_prime_UTR 60.0%
! GGCATCAGTGGCGGAGAAGA+CGG - chr3_1:85404397-85404416 None:intergenic 60.0%
GCTACGCTTGGCATCAGTGG+CGG - chr3_1:85404406-85404425 None:intergenic 60.0%
GCAGCACCAAGACTCCTAGC+AGG - chr3_1:85404709-85404728 None:intergenic 60.0%
GTGGTGAGTGCGTTGGGTGA+TGG + chr3_1:85405115-85405134 Msa0382660:three_prime_UTR 60.0%
GGCGCTACGCTTGGCATCAG+TGG - chr3_1:85404409-85404428 None:intergenic 65.0%
GGAGTCTCTGGCGCTACGCT+TGG - chr3_1:85404418-85404437 None:intergenic 65.0%
GGCGCTACGCTTGGCATCAG+TGG - chr3_1:85404409-85404428 None:intergenic 65.0%
GGAGTCTCTGGCGCTACGCT+TGG - chr3_1:85404418-85404437 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85403075 85405256 85403075 ID=Msa0382660;Name=Msa0382660
chr3_1 mRNA 85403075 85405256 85403075 ID=Msa0382660-mRNA-1;Parent=Msa0382660;Name=Msa0382660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=70|1|1|1|1|1|4|289|290
chr3_1 exon 85403075 85403481 85403075 ID=Msa0382660-mRNA-1:exon:22366;Parent=Msa0382660-mRNA-1
chr3_1 exon 85404148 85404446 85404148 ID=Msa0382660-mRNA-1:exon:22367;Parent=Msa0382660-mRNA-1
chr3_1 exon 85404625 85404765 85404625 ID=Msa0382660-mRNA-1:exon:22368;Parent=Msa0382660-mRNA-1
chr3_1 exon 85404872 85405256 85404872 ID=Msa0382660-mRNA-1:exon:22369;Parent=Msa0382660-mRNA-1
chr3_1 five_prime_UTR 85403075 85403144 85403075 ID=Msa0382660-mRNA-1:five_prime_utr;Parent=Msa0382660-mRNA-1
chr3_1 CDS 85403145 85403481 85403145 ID=Msa0382660-mRNA-1:cds;Parent=Msa0382660-mRNA-1
chr3_1 CDS 85404148 85404446 85404148 ID=Msa0382660-mRNA-1:cds;Parent=Msa0382660-mRNA-1
chr3_1 CDS 85404625 85404765 85404625 ID=Msa0382660-mRNA-1:cds;Parent=Msa0382660-mRNA-1
chr3_1 CDS 85404872 85404967 85404872 ID=Msa0382660-mRNA-1:cds;Parent=Msa0382660-mRNA-1
chr3_1 three_prime_UTR 85404968 85405256 85404968 ID=Msa0382660-mRNA-1:three_prime_utr;Parent=Msa0382660-mRNA-1
Gene Sequence

>Msa0382660

ATGGAGGCTAAAGAACAAGATGTTTCATTGGGAGCTAACAAATTCCCAGAGAGACAACCAATTGGTATTGCAGCTCAGAGCCATGATGATGGAAAGGACTACAAGGAACCACCACCAGCACCATTGTTTGAGCCTTCTGAGCTCACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTTGTGGCCACTTTTCTGTTCTTGTACATCACCATCTTGACTGTTATGGGTGTTAACAGATCTGAGTCTAAGTGTAAAACTGTTGGTATTCAAGGAATTGCTTGGTCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACCGCTGGTATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCAAGGAAATTGTCATTAACCAGAGCTTTGTTCTACATGGTGATGCAAACCCTTGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTTGAGGGAAAGACTTTCTACACCAACAAAAATGGTGGTGCTAACTTTGTTGCCCCTGGTTACACTAAAGGTGATGGACTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACTGATGCCAAGCGTAGCGCCAGAGACTCCCACGTTCCTATTTTGGCTCCACTGCCAATTGGGTTCGCTGTATTTTTGGTGCATTTGGCCACTATCCCAATCACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAAGATCTTGGTTGGAATGATCACTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCTCTTTACCACACAGTTGTGATCAGAGCCATTCCTTTCAAGTCAAGTAATTAA
Protein sequence

>Msa0382660

MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSESKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQTLGAICGAGVVKGFEGKTFYTNKNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWNDHWIFWVGPFIGAALAALYHTVVIRAIPFKSSN*