Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179980 | sp|Q9MA90|PNC1_ARATH | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 8.91e-158 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179980 | G7IE57 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0179980 | Msa0688810 | 0.821506 | 3.894208e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179980 | MtrunA17_Chr1g0205941 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| Msa0179980 | MtrunA17_Chr5g0416661 | 69.032 | 310 | 94 | 2 | 1 | 310 | 1 | 308 | 1.20e-151 | 428 |
| Msa0179980 | MtrunA17_Chr7g0231821 | 68.199 | 261 | 81 | 2 | 1 | 261 | 1 | 259 | 1.08e-122 | 352 |
| Msa0179980 | MtrunA17_Chr5g0436571 | 26.899 | 316 | 182 | 6 | 24 | 303 | 21 | 323 | 1.91e-27 | 109 |
| Msa0179980 | MtrunA17_Chr8g0372531 | 23.860 | 285 | 196 | 7 | 25 | 297 | 28 | 303 | 3.50e-19 | 86.3 |
| Msa0179980 | MtrunA17_Chr8g0385571 | 29.097 | 299 | 173 | 13 | 13 | 298 | 229 | 501 | 1.02e-18 | 86.7 |
| Msa0179980 | MtrunA17_Chr1g0163521 | 24.198 | 343 | 185 | 10 | 26 | 302 | 25 | 358 | 1.66e-17 | 82.4 |
| Msa0179980 | MtrunA17_Chr7g0269701 | 25.000 | 304 | 196 | 8 | 8 | 297 | 19 | 304 | 6.56e-14 | 71.2 |
| Msa0179980 | MtrunA17_Chr3g0135801 | 21.895 | 306 | 189 | 12 | 13 | 293 | 36 | 316 | 9.42e-13 | 67.8 |
| Msa0179980 | MtrunA17_Chr7g0252401 | 27.181 | 298 | 177 | 14 | 13 | 298 | 209 | 478 | 1.28e-12 | 68.2 |
| Msa0179980 | MtrunA17_Chr1g0149111 | 23.232 | 297 | 191 | 10 | 7 | 293 | 135 | 404 | 9.73e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179980 | AT3G05290.1 | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 9.06e-159 | 446 |
| Msa0179980 | AT5G27520.1 | 69.551 | 312 | 91 | 3 | 1 | 310 | 3 | 312 | 1.47e-156 | 441 |
| Msa0179980 | AT2G39970.1 | 24.522 | 314 | 190 | 6 | 26 | 303 | 23 | 325 | 4.91e-26 | 105 |
| Msa0179980 | AT5G66380.1 | 23.411 | 299 | 209 | 6 | 10 | 297 | 9 | 298 | 1.63e-19 | 87.8 |
| Msa0179980 | AT5G07320.1 | 27.178 | 287 | 172 | 13 | 20 | 298 | 218 | 475 | 1.96e-12 | 68.2 |
| Msa0179980 | AT4G32400.1 | 22.667 | 300 | 197 | 8 | 7 | 297 | 110 | 383 | 2.21e-12 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 1_4:-67760062 | None:intergenic |
| CTACTTTAAGAGACTGTATT+TGG | 0.163762 | 1_4:+67758592 | Msa0179980:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 1_4:+67759882 | Msa0179980:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 1_4:-67760061 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 1_4:-67757541 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 1_4:+67758563 | Msa0179980:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 1_4:+67759144 | Msa0179980:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 1_4:+67759248 | Msa0179980:CDS |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 1_4:-67759124 | None:intergenic |
| TCATTGTCTGAAGCTACTTC+TGG | 0.274841 | 1_4:+67757462 | Msa0179980:CDS |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 1_4:+67758515 | Msa0179980:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 1_4:-67759458 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 1_4:-67759258 | None:intergenic |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 1_4:-67759232 | None:intergenic |
| GAAGCTACTTCTGGGGCTAT+TGG | 0.386853 | 1_4:+67757471 | Msa0179980:CDS |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 1_4:+67759522 | Msa0179980:CDS |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 1_4:+67759799 | Msa0179980:intron |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 1_4:-67759533 | None:intergenic |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 1_4:+67759902 | Msa0179980:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 1_4:+67758514 | Msa0179980:CDS |
| CATTGTCTGAAGCTACTTCT+GGG | 0.446171 | 1_4:+67757463 | Msa0179980:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 1_4:+67760016 | Msa0179980:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 1_4:+67758653 | Msa0179980:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 1_4:-67759457 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 1_4:+67759901 | Msa0179980:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 1_4:+67759863 | Msa0179980:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 1_4:+67759400 | Msa0179980:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 1_4:-67758555 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 1_4:+67759204 | Msa0179980:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 1_4:+67759967 | Msa0179980:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 1_4:+67759187 | Msa0179980:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 1_4:-67759190 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 1_4:+67759163 | Msa0179980:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 1_4:+67759401 | Msa0179980:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 1_4:+67758490 | Msa0179980:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 1_4:-67759172 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 1_4:+67759844 | Msa0179980:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 1_4:+67757565 | Msa0179980:CDS |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 1_4:-67759441 | None:intergenic |
| ATAAGACGGTGGTGCTAACA+AGG | 0.533763 | 1_4:-67757497 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 1_4:+67759973 | Msa0179980:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 1_4:-67758550 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 1_4:-67760060 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 1_4:-67760058 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 1_4:-67759123 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 1_4:+67758617 | Msa0179980:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 1_4:-67759139 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 1_4:+67759155 | Msa0179980:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 1_4:+67759439 | Msa0179980:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 1_4:-67759205 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 1_4:-67759532 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 1_4:+67759893 | Msa0179980:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 1_4:+67758516 | Msa0179980:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 1_4:-67760059 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 1_4:+67759124 | Msa0179980:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 1_4:+67759156 | Msa0179980:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 1_4:+67759996 | Msa0179980:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 1_4:+67758509 | Msa0179980:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 1_4:+67759180 | Msa0179980:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 1_4:+67759852 | Msa0179980:CDS |
| AGTATCAAGTGGGTATAAGA+CGG | 0.645303 | 1_4:-67757511 | None:intergenic |
| CTGTACAATACTAATAACAC+AGG | 0.650569 | 1_4:+67758679 | Msa0179980:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 1_4:-67759456 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 1_4:-67759257 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 1_4:+67759179 | Msa0179980:CDS |
| ATTGTCTGAAGCTACTTCTG+GGG | 0.678769 | 1_4:+67757464 | Msa0179980:CDS |
| TATTAGTATTGTACAGACGC+CGG | 0.694097 | 1_4:-67758672 | None:intergenic |
| ATCAAGTGGGTATAAGACGG+TGG | 0.699563 | 1_4:-67757508 | None:intergenic |
| TAAGACGGTGGTGCTAACAA+GGG | 0.700229 | 1_4:-67757496 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 1_4:-67758660 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTCATGAAACAATTT+AGG | + | chr1_4:67757629-67757648 | Msa0179980:intron | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | + | chr1_4:67758395-67758414 | Msa0179980:intron | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | - | chr1_4:67758798-67758817 | None:intergenic | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | - | chr1_4:67758799-67758818 | None:intergenic | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | + | chr1_4:67758807-67758826 | Msa0179980:intron | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | + | chr1_4:67758856-67758875 | Msa0179980:intron | 15.0% |
| !! | AATCTAGAGATAAATAATTT+AGG | - | chr1_4:67759559-67759578 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | - | chr1_4:67759631-67759650 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | + | chr1_4:67759630-67759649 | Msa0179980:intron | 15.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | - | chr1_4:67757611-67757630 | None:intergenic | 20.0% |
| !! | TTTAAGAACATCTTGTATTT+GGG | + | chr1_4:67757808-67757827 | Msa0179980:intron | 20.0% |
| !! | ATGTAGTTTATGAAAAAAAC+AGG | + | chr1_4:67758021-67758040 | Msa0179980:intron | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | + | chr1_4:67758045-67758064 | Msa0179980:intron | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | - | chr1_4:67758373-67758392 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | + | chr1_4:67758806-67758825 | Msa0179980:intron | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | - | chr1_4:67759235-67759254 | None:intergenic | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | + | chr1_4:67759586-67759605 | Msa0179980:intron | 20.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | - | chr1_4:67757572-67757591 | None:intergenic | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | + | chr1_4:67757583-67757602 | Msa0179980:intron | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | + | chr1_4:67757584-67757603 | Msa0179980:intron | 25.0% |
| !!! | ATTTTTTACCAAATACAGAC+AGG | - | chr1_4:67757681-67757700 | None:intergenic | 25.0% |
| !! | AGGAAAACAAATGATAATGT+CGG | + | chr1_4:67757773-67757792 | Msa0179980:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | + | chr1_4:67757807-67757826 | Msa0179980:intron | 25.0% |
| ! | TTTATCACAATAACTACTCT+AGG | + | chr1_4:67757903-67757922 | Msa0179980:intron | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | + | chr1_4:67758129-67758148 | Msa0179980:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | - | chr1_4:67758247-67758266 | None:intergenic | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | - | chr1_4:67758345-67758364 | None:intergenic | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | + | chr1_4:67758469-67758488 | Msa0179980:CDS | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | - | chr1_4:67758558-67758577 | None:intergenic | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | + | chr1_4:67758563-67758582 | Msa0179980:CDS | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | + | chr1_4:67758743-67758762 | Msa0179980:intron | 25.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | + | chr1_4:67759014-67759033 | Msa0179980:intron | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | + | chr1_4:67759311-67759330 | Msa0179980:intron | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | + | chr1_4:67759585-67759604 | Msa0179980:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | - | chr1_4:67759623-67759642 | None:intergenic | 25.0% |
| !!! | TAAATTTTTTCACAGATCTG+TGG | + | chr1_4:67759670-67759689 | Msa0179980:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | + | chr1_4:67759780-67759799 | Msa0179980:intron | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | + | chr1_4:67759893-67759912 | Msa0179980:CDS | 25.0% |
| !! | TGGTTTTACAAGTATCAAGT+GGG | - | chr1_4:67757524-67757543 | None:intergenic | 30.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | - | chr1_4:67757525-67757544 | None:intergenic | 30.0% |
| TTGAACTTCAGCTTGATATT+TGG | - | chr1_4:67757544-67757563 | None:intergenic | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | - | chr1_4:67757598-67757617 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | + | chr1_4:67757601-67757620 | Msa0179980:intron | 30.0% | |
| ! | ATTTAGGTTAAGTGTGTGTT+TGG | + | chr1_4:67757645-67757664 | Msa0179980:intron | 30.0% |
| ACGAAAACATCTTACAGTTT+AGG | + | chr1_4:67758207-67758226 | Msa0179980:intron | 30.0% | |
| ! | GGAGAATTTCTGATGTTTTA+TGG | + | chr1_4:67758468-67758487 | Msa0179980:intron | 30.0% |
| ! | CTACTTTAAGAGACTGTATT+TGG | + | chr1_4:67758592-67758611 | Msa0179980:CDS | 30.0% |
| AGACTGTATTTGGAAAAAAG+TGG | + | chr1_4:67758602-67758621 | Msa0179980:CDS | 30.0% | |
| AAAAGTGGAAACAAGAACAT+TGG | + | chr1_4:67758617-67758636 | Msa0179980:CDS | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | + | chr1_4:67758679-67758698 | Msa0179980:CDS | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | - | chr1_4:67758843-67758862 | None:intergenic | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | + | chr1_4:67759155-67759174 | Msa0179980:CDS | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | + | chr1_4:67759156-67759175 | Msa0179980:CDS | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | - | chr1_4:67759327-67759346 | None:intergenic | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | - | chr1_4:67759798-67759817 | None:intergenic | 30.0% | |
| AGTATCAAGTGGGTATAAGA+CGG | - | chr1_4:67757514-67757533 | None:intergenic | 35.0% | |
| ! | CACTATCAAGTATTGTTCAG+TGG | + | chr1_4:67757750-67757769 | Msa0179980:intron | 35.0% |
| ! | TATCAAGTATTGTTCAGTGG+AGG | + | chr1_4:67757753-67757772 | Msa0179980:intron | 35.0% |
| ! | CAAATGATAATGTCGGTGTT+TGG | + | chr1_4:67757780-67757799 | Msa0179980:intron | 35.0% |
| AGAACATCTTGTATTTGGGT+TGG | + | chr1_4:67757812-67757831 | Msa0179980:intron | 35.0% | |
| TGACATACATCCGTTTGTAT+TGG | - | chr1_4:67758142-67758161 | None:intergenic | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | + | chr1_4:67758177-67758196 | Msa0179980:intron | 35.0% | |
| ! | GATGTTTTCGTAAACTATCC+TGG | - | chr1_4:67758198-67758217 | None:intergenic | 35.0% |
| TTATTGTGGCAAGATTAGCA+AGG | + | chr1_4:67758409-67758428 | Msa0179980:intron | 35.0% | |
| GTTGTTGCTCTATCTTATGT+AGG | + | chr1_4:67758447-67758466 | Msa0179980:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | - | chr1_4:67758553-67758572 | None:intergenic | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | - | chr1_4:67758675-67758694 | None:intergenic | 35.0% | |
| TTAATGTCATGTTTGCAGGA+CGG | - | chr1_4:67758839-67758858 | None:intergenic | 35.0% | |
| ATCTTTAGCAGAACTAGGTA+CGG | + | chr1_4:67758906-67758925 | Msa0179980:intron | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | + | chr1_4:67758955-67758974 | Msa0179980:intron | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | - | chr1_4:67759064-67759083 | None:intergenic | 35.0% | |
| !! | CTCATTATTTCCTTGCTGTT+AGG | + | chr1_4:67759066-67759085 | Msa0179980:intron | 35.0% |
| AACAACAAACCCATCTATTC+AGG | + | chr1_4:67759248-67759267 | Msa0179980:CDS | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | - | chr1_4:67759260-67759279 | None:intergenic | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | - | chr1_4:67759261-67759280 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | + | chr1_4:67759401-67759420 | Msa0179980:CDS | 35.0% | |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | + | chr1_4:67759472-67759491 | Msa0179980:CDS | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | + | chr1_4:67759473-67759492 | Msa0179980:CDS | 35.0% |
| AAACATCTTTCATCAGCATG+TGG | - | chr1_4:67759768-67759787 | None:intergenic | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | + | chr1_4:67759799-67759818 | Msa0179980:intron | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | + | chr1_4:67759973-67759992 | Msa0179980:CDS | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | - | chr1_4:67760062-67760081 | None:intergenic | 35.0% | |
| ! | TCATTGTCTGAAGCTACTTC+TGG | + | chr1_4:67757462-67757481 | Msa0179980:CDS | 40.0% |
| ! | CATTGTCTGAAGCTACTTCT+GGG | + | chr1_4:67757463-67757482 | Msa0179980:CDS | 40.0% |
| ! | ATTGTCTGAAGCTACTTCTG+GGG | + | chr1_4:67757464-67757483 | Msa0179980:CDS | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | - | chr1_4:67757568-67757587 | None:intergenic | 40.0% |
| CCAGCCATCAAAGAAAATAC+AGG | + | chr1_4:67757565-67757584 | Msa0179980:CDS | 40.0% | |
| TAGAGACTCCTGTCTGTATT+TGG | + | chr1_4:67757670-67757689 | Msa0179980:intron | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | + | chr1_4:67758490-67758509 | Msa0179980:CDS | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | + | chr1_4:67758515-67758534 | Msa0179980:CDS | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | + | chr1_4:67758516-67758535 | Msa0179980:CDS | 40.0% | |
| ACTCGATCTTTAGCAGAACT+AGG | + | chr1_4:67758901-67758920 | Msa0179980:intron | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | - | chr1_4:67758960-67758979 | None:intergenic | 40.0% |
| AGATTATGCACCTAACAGCA+AGG | - | chr1_4:67759079-67759098 | None:intergenic | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | - | chr1_4:67759126-67759145 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | + | chr1_4:67759144-67759163 | Msa0179980:CDS | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | - | chr1_4:67759379-67759398 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | + | chr1_4:67759400-67759419 | Msa0179980:CDS | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | - | chr1_4:67759460-67759479 | None:intergenic | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | - | chr1_4:67759461-67759480 | None:intergenic | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | - | chr1_4:67759535-67759554 | None:intergenic | 40.0% | |
| ! | TTGATAATCCACCTGATAGC+TGG | - | chr1_4:67759536-67759555 | None:intergenic | 40.0% |
| TGGTTTCTGCAGATGTATCT+TGG | + | chr1_4:67759690-67759709 | Msa0179980:intron | 40.0% | |
| GGTTTCTGCAGATGTATCTT+GGG | + | chr1_4:67759691-67759710 | Msa0179980:intron | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | + | chr1_4:67759844-67759863 | Msa0179980:CDS | 40.0% | |
| ! | CTGGAGCACTCTATACTATT+TGG | + | chr1_4:67759882-67759901 | Msa0179980:CDS | 40.0% |
| !! | GCCTCTTGGGATTTTTCAAT+GGG | + | chr1_4:67759915-67759934 | Msa0179980:CDS | 40.0% |
| ACCCATTGAAAAATCCCAAG+AGG | - | chr1_4:67759919-67759938 | None:intergenic | 40.0% | |
| AGAAGATCACAAAGTCGACA+TGG | + | chr1_4:67759996-67760015 | Msa0179980:CDS | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | + | chr1_4:67760016-67760035 | Msa0179980:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | - | chr1_4:67760061-67760080 | None:intergenic | 40.0% | |
| ! | TAAGACGGTGGTGCTAACAA+GGG | - | chr1_4:67757499-67757518 | None:intergenic | 45.0% |
| ! | ATAAGACGGTGGTGCTAACA+AGG | - | chr1_4:67757500-67757519 | None:intergenic | 45.0% |
| ATCAAGTGGGTATAAGACGG+TGG | - | chr1_4:67757511-67757530 | None:intergenic | 45.0% | |
| TTACCATTTGGCATCGTGTG+CGG | - | chr1_4:67758333-67758352 | None:intergenic | 45.0% | |
| CAGGTGCTTTCATTGTACCA+AGG | + | chr1_4:67758509-67758528 | Msa0179980:CDS | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | + | chr1_4:67758514-67758533 | Msa0179980:CDS | 45.0% | |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | - | chr1_4:67758529-67758548 | None:intergenic | 45.0% |
| TTGATTGCCGCTACTATGTC+CGG | + | chr1_4:67758653-67758672 | Msa0179980:CDS | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | - | chr1_4:67759127-67759146 | None:intergenic | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | + | chr1_4:67759124-67759143 | Msa0179980:CDS | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | - | chr1_4:67759142-67759161 | None:intergenic | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | + | chr1_4:67759163-67759182 | Msa0179980:CDS | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | + | chr1_4:67759204-67759223 | Msa0179980:CDS | 45.0% | |
| ACCATCAAATGCATCACTCC+AGG | - | chr1_4:67759208-67759227 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | - | chr1_4:67759376-67759395 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | - | chr1_4:67759459-67759478 | None:intergenic | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | + | chr1_4:67759901-67759920 | Msa0179980:CDS | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | + | chr1_4:67759902-67759921 | Msa0179980:CDS | 45.0% | |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | + | chr1_4:67759914-67759933 | Msa0179980:CDS | 45.0% |
| !!! | GGGATTTTTCAATGGGTTGC+AGG | + | chr1_4:67759922-67759941 | Msa0179980:CDS | 45.0% |
| CAGCTCTGCATTACTTCTGA+TGG | + | chr1_4:67759967-67759986 | Msa0179980:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | - | chr1_4:67760056-67760075 | None:intergenic | 45.0% | |
| !! | GAAGCTACTTCTGGGGCTAT+TGG | + | chr1_4:67757471-67757490 | Msa0179980:CDS | 50.0% |
| ACTCTGGCAGACCTTATCAG+AGG | + | chr1_4:67759179-67759198 | Msa0179980:CDS | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | + | chr1_4:67759180-67759199 | Msa0179980:CDS | 50.0% | |
| !! | AGACCTTATCAGAGGGTACC+TGG | + | chr1_4:67759187-67759206 | Msa0179980:CDS | 50.0% |
| ACTCCAGGTACCCTCTGATA+AGG | - | chr1_4:67759193-67759212 | None:intergenic | 50.0% | |
| AACCGATGCAAAGTCATCCC+CGG | + | chr1_4:67759439-67759458 | Msa0179980:CDS | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | - | chr1_4:67759444-67759463 | None:intergenic | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | + | chr1_4:67759522-67759541 | Msa0179980:CDS | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | + | chr1_4:67759525-67759544 | Msa0179980:intron | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | + | chr1_4:67759852-67759871 | Msa0179980:CDS | 50.0% |
| CATCAGCGCAGCACGTGTTT+GGG | + | chr1_4:67757835-67757854 | Msa0179980:intron | 55.0% | |
| CATTTGGCATCGTGTGCGGT+TGG | - | chr1_4:67758329-67758348 | None:intergenic | 55.0% | |
| CAACCGCACACGATGCCAAA+TGG | + | chr1_4:67758327-67758346 | Msa0179980:intron | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | - | chr1_4:67758663-67758682 | None:intergenic | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | - | chr1_4:67759175-67759194 | None:intergenic | 55.0% | |
| AAGGCGCAGAGGACAATCTC+TGG | + | chr1_4:67759863-67759882 | Msa0179980:CDS | 55.0% | |
| GCATCAGCGCAGCACGTGTT+TGG | + | chr1_4:67757834-67757853 | Msa0179980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67757444 | 67760081 | 67757444 | ID=Msa0179980;Name=Msa0179980 |
| chr1_4 | mRNA | 67757444 | 67760081 | 67757444 | ID=Msa0179980-mRNA-1;Parent=Msa0179980;Name=Msa0179980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|320 |
| chr1_4 | exon | 67757444 | 67757586 | 67757444 | ID=Msa0179980-mRNA-1:exon:22316;Parent=Msa0179980-mRNA-1 |
| chr1_4 | exon | 67758469 | 67758700 | 67758469 | ID=Msa0179980-mRNA-1:exon:22317;Parent=Msa0179980-mRNA-1 |
| chr1_4 | exon | 67759123 | 67759269 | 67759123 | ID=Msa0179980-mRNA-1:exon:22318;Parent=Msa0179980-mRNA-1 |
| chr1_4 | exon | 67759383 | 67759543 | 67759383 | ID=Msa0179980-mRNA-1:exon:22319;Parent=Msa0179980-mRNA-1 |
| chr1_4 | exon | 67759802 | 67760081 | 67759802 | ID=Msa0179980-mRNA-1:exon:22320;Parent=Msa0179980-mRNA-1 |
| chr1_4 | CDS | 67757444 | 67757586 | 67757444 | ID=Msa0179980-mRNA-1:cds;Parent=Msa0179980-mRNA-1 |
| chr1_4 | CDS | 67758469 | 67758700 | 67758469 | ID=Msa0179980-mRNA-1:cds;Parent=Msa0179980-mRNA-1 |
| chr1_4 | CDS | 67759123 | 67759269 | 67759123 | ID=Msa0179980-mRNA-1:cds;Parent=Msa0179980-mRNA-1 |
| chr1_4 | CDS | 67759383 | 67759543 | 67759383 | ID=Msa0179980-mRNA-1:cds;Parent=Msa0179980-mRNA-1 |
| chr1_4 | CDS | 67759802 | 67760081 | 67759802 | ID=Msa0179980-mRNA-1:cds;Parent=Msa0179980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
