Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688810 | XP_003592476.2 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688810 | sp|Q9MA90|PNC1_ARATH | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 8.91e-158 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688810 | G7IE57 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027030 | Msa0688810 | 0.803269 | 3.778245e-49 | -8.615850e-47 |
| Msa0029280 | Msa0688810 | 0.802108 | 6.560521e-49 | -8.615850e-47 |
| Msa0039140 | Msa0688810 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0042500 | Msa0688810 | 0.834907 | 2.284937e-56 | -8.615850e-47 |
| Msa0075990 | Msa0688810 | 0.803142 | 4.014657e-49 | -8.615850e-47 |
| Msa0079320 | Msa0688810 | 0.836161 | 1.100488e-56 | -8.615850e-47 |
| Msa0079570 | Msa0688810 | 0.835130 | 2.007630e-56 | -8.615850e-47 |
| Msa0082340 | Msa0688810 | 0.802041 | 6.771173e-49 | -8.615850e-47 |
| Msa0084330 | Msa0688810 | 0.808809 | 2.580015e-50 | -8.615850e-47 |
| Msa0097470 | Msa0688810 | 0.825763 | 3.925748e-54 | -8.615850e-47 |
| Msa0614060 | Msa0688810 | 0.806117 | 9.610377e-50 | -8.615850e-47 |
| Msa0616890 | Msa0688810 | 0.801489 | 8.788079e-49 | -8.615850e-47 |
| Msa0619450 | Msa0688810 | 0.807137 | 5.854781e-50 | -8.615850e-47 |
| Msa0619460 | Msa0688810 | 0.804544 | 2.053359e-49 | -8.615850e-47 |
| Msa0619530 | Msa0688810 | 0.802288 | 6.023916e-49 | -8.615850e-47 |
| Msa0634900 | Msa0688810 | 0.803833 | 2.886112e-49 | -8.615850e-47 |
| Msa0638550 | Msa0688810 | 0.806218 | 9.153287e-50 | -8.615850e-47 |
| Msa0646030 | Msa0688810 | 0.808003 | 3.833287e-50 | -8.615850e-47 |
| Msa0648410 | Msa0688810 | 0.801663 | 8.098142e-49 | -8.615850e-47 |
| Msa0652220 | Msa0688810 | 0.805905 | 1.065082e-49 | -8.615850e-47 |
| Msa0659580 | Msa0688810 | 0.802715 | 4.918942e-49 | -8.615850e-47 |
| Msa0660160 | Msa0688810 | 0.808200 | 3.481694e-50 | -8.615850e-47 |
| Msa0662230 | Msa0688810 | 0.806153 | 9.444667e-50 | -8.615850e-47 |
| Msa0677160 | Msa0688810 | 0.800484 | 1.410183e-48 | -8.615850e-47 |
| Msa0688810 | Msa0690920 | 0.803854 | 2.857044e-49 | -8.615850e-47 |
| Msa0688810 | Msa0694800 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
| Msa0688810 | Msa0703620 | 0.805495 | 1.298822e-49 | -8.615850e-47 |
| Msa0688810 | Msa0708380 | 0.811064 | 8.439482e-51 | -8.615850e-47 |
| Msa0688810 | Msa0708450 | 0.809591 | 1.754300e-50 | -8.615850e-47 |
| Msa0688810 | Msa0712100 | 0.800804 | 1.213475e-48 | -8.615850e-47 |
| Msa0688810 | Msa0717540 | 0.803809 | 2.919331e-49 | -8.615850e-47 |
| Msa0688810 | Msa0730250 | 0.801048 | 1.081936e-48 | -8.615850e-47 |
| Msa0688810 | Msa0733460 | 0.805642 | 1.209686e-49 | -8.615850e-47 |
| Msa0688810 | Msa0752490 | 0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa0688810 | Msa0752770 | 0.830632 | 2.632630e-55 | -8.615850e-47 |
| Msa0688810 | Msa0768240 | 0.811722 | 6.074357e-51 | -8.615850e-47 |
| Msa0688810 | Msa0830830 | 0.818025 | 2.431033e-52 | -8.615850e-47 |
| Msa0688810 | Msa0833360 | 0.805560 | 1.258486e-49 | -8.615850e-47 |
| Msa0688810 | Msa0842370 | 0.800039 | 1.737836e-48 | -8.615850e-47 |
| Msa0688810 | Msa0871790 | 0.812800 | 3.532897e-51 | -8.615850e-47 |
| Msa0688810 | Msa0929440 | 0.803836 | 2.882436e-49 | -8.615850e-47 |
| Msa0688810 | Msa0968060 | 0.804961 | 1.680194e-49 | -8.615850e-47 |
| Msa0688810 | Msa1020160 | 0.817144 | 3.839434e-52 | -8.615850e-47 |
| Msa0688810 | Msa1031620 | 0.812463 | 4.187269e-51 | -8.615850e-47 |
| Msa0688810 | Msa1033460 | 0.807692 | 4.463908e-50 | -8.615850e-47 |
| Msa0688810 | Msa1038040 | 0.822075 | 2.876028e-53 | -8.615850e-47 |
| Msa0688810 | Msa1056790 | 0.804885 | 1.742641e-49 | -8.615850e-47 |
| Msa0688810 | Msa1066790 | 0.800191 | 1.617966e-48 | -8.615850e-47 |
| Msa0688810 | Msa1078210 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0688810 | Msa1083620 | 0.816938 | 4.272155e-52 | -8.615850e-47 |
| Msa0688810 | Msa1113780 | 0.808532 | 2.956799e-50 | -8.615850e-47 |
| Msa0688810 | Msa1118870 | 0.804085 | 2.558321e-49 | -8.615850e-47 |
| Msa0688810 | Msa1118890 | 0.809593 | 1.752234e-50 | -8.615850e-47 |
| Msa0688810 | Msa1136770 | 0.823074 | 1.684204e-53 | -8.615850e-47 |
| Msa0688810 | Msa1160470 | 0.803387 | 3.571103e-49 | -8.615850e-47 |
| Msa0688810 | Msa1165330 | 0.815972 | 7.028214e-52 | -8.615850e-47 |
| Msa0688810 | Msa1206510 | 0.818105 | 2.331134e-52 | -8.615850e-47 |
| Msa0688810 | Msa1223600 | 0.809438 | 1.892052e-50 | -8.615850e-47 |
| Msa0688810 | Msa1229880 | 0.816507 | 5.336508e-52 | -8.615850e-47 |
| Msa0688810 | Msa1263460 | 0.802091 | 6.611583e-49 | -8.615850e-47 |
| Msa0688810 | Msa1267390 | 0.826141 | 3.192776e-54 | -8.615850e-47 |
| Msa0688810 | Msa1269370 | 0.800041 | 1.735789e-48 | -8.615850e-47 |
| Msa0688810 | Msa1298170 | 0.816843 | 4.485899e-52 | -8.615850e-47 |
| Msa0688810 | Msa1310620 | 0.808803 | 2.587679e-50 | -8.615850e-47 |
| Msa0688810 | Msa1317340 | 0.800464 | 1.423986e-48 | -8.615850e-47 |
| Msa0688810 | Msa1320660 | 0.802462 | 5.547266e-49 | -8.615850e-47 |
| Msa0688810 | Msa1345540 | 0.821398 | 4.125028e-53 | -8.615850e-47 |
| Msa0688810 | Msa1346220 | 0.802277 | 6.056371e-49 | -8.615850e-47 |
| Msa0688810 | Msa1346340 | 0.807216 | 5.632565e-50 | -8.615850e-47 |
| Msa0688810 | Msa1348180 | 0.805250 | 1.461500e-49 | -8.615850e-47 |
| Msa0688810 | Msa1357090 | 0.836026 | 1.190693e-56 | -8.615850e-47 |
| Msa0688810 | Msa1360070 | 0.841312 | 5.128208e-58 | -8.615850e-47 |
| Msa0688810 | Msa1367690 | 0.804920 | 1.713627e-49 | -8.615850e-47 |
| Msa0688810 | Msa1371540 | 0.803657 | 3.139925e-49 | -8.615850e-47 |
| Msa0688810 | Msa1374610 | 0.803214 | 3.879256e-49 | -8.615850e-47 |
| Msa0688810 | Msa1375980 | 0.819252 | 1.280758e-52 | -8.615850e-47 |
| Msa0688810 | Msa1381340 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0688810 | Msa1387650 | 0.802651 | 5.071373e-49 | -8.615850e-47 |
| Msa0688810 | Msa1398150 | 0.819970 | 8.781676e-53 | -8.615850e-47 |
| Msa0688810 | Msa1401640 | 0.825034 | 5.841667e-54 | -8.615850e-47 |
| Msa0688810 | Msa1403820 | 0.815235 | 1.025627e-51 | -8.615850e-47 |
| Msa0688810 | Msa1414000 | 0.809897 | 1.507400e-50 | -8.615850e-47 |
| Msa0688810 | Msa1416850 | 0.814151 | 1.782586e-51 | -8.615850e-47 |
| Msa0688810 | Msa1419620 | 0.806755 | 7.052640e-50 | -8.615850e-47 |
| Msa0688810 | Msa1424250 | 0.819184 | 1.327251e-52 | -8.615850e-47 |
| Msa0688810 | Msa1425600 | 0.810296 | 1.237157e-50 | -8.615850e-47 |
| Msa0688810 | Msa1426690 | 0.810381 | 1.185658e-50 | -8.615850e-47 |
| Msa0688810 | Msa1428050 | 0.818428 | 1.970525e-52 | -8.615850e-47 |
| Msa0688810 | Msa1432100 | 0.802442 | 5.599218e-49 | -8.615850e-47 |
| Msa0688810 | Msa1433060 | 0.805921 | 1.056674e-49 | -8.615850e-47 |
| Msa0688810 | Msa1449510 | 0.808767 | 2.634652e-50 | -8.615850e-47 |
| Msa0688810 | Msa1451200 | 0.805424 | 1.343946e-49 | -8.615850e-47 |
| Msa0688810 | Msa1452230 | 0.800657 | 1.300467e-48 | -8.615850e-47 |
| Msa0688810 | Msa1457390 | 0.812288 | 4.571629e-51 | -8.615850e-47 |
| Msa0688810 | Msa1462210 | 0.834533 | 2.837738e-56 | -8.615850e-47 |
| Msa0688810 | Msa1463890 | 0.831493 | 1.617576e-55 | -8.615850e-47 |
| Msa0127240 | Msa0688810 | 0.824535 | 7.658324e-54 | -8.615850e-47 |
| Msa0138340 | Msa0688810 | 0.806482 | 8.052240e-50 | -8.615850e-47 |
| Msa0147960 | Msa0688810 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0159240 | Msa0688810 | 0.801162 | 1.025509e-48 | -8.615850e-47 |
| Msa0164580 | Msa0688810 | 0.815476 | 9.066734e-52 | -8.615850e-47 |
| Msa0165820 | Msa0688810 | 0.808474 | 3.042200e-50 | -8.615850e-47 |
| Msa0172110 | Msa0688810 | 0.811626 | 6.373820e-51 | -8.615850e-47 |
| Msa0172290 | Msa0688810 | 0.825234 | 5.239650e-54 | -8.615850e-47 |
| Msa0179980 | Msa0688810 | 0.821506 | 3.894208e-53 | -8.615850e-47 |
| Msa0184690 | Msa0688810 | 0.967976 | 5.030629e-128 | -8.615850e-47 |
| Msa0186380 | Msa0688810 | 0.811961 | 5.388696e-51 | -8.615850e-47 |
| Msa0186400 | Msa0688810 | 0.814946 | 1.189171e-51 | -8.615850e-47 |
| Msa0194750 | Msa0688810 | 0.815647 | 8.305380e-52 | -8.615850e-47 |
| Msa0195810 | Msa0688810 | 0.821050 | 4.961014e-53 | -8.615850e-47 |
| Msa0208710 | Msa0688810 | 0.801095 | 1.058257e-48 | -8.615850e-47 |
| Msa0212290 | Msa0688810 | 0.813099 | 3.037963e-51 | -8.615850e-47 |
| Msa0225080 | Msa0688810 | 0.807338 | 5.306613e-50 | -8.615850e-47 |
| Msa0365350 | Msa0688810 | 0.802996 | 4.303841e-49 | -8.615850e-47 |
| Msa0382060 | Msa0688810 | 0.816336 | 5.828658e-52 | -8.615850e-47 |
| Msa0385850 | Msa0688810 | 0.803328 | 3.673366e-49 | -8.615850e-47 |
| Msa0385870 | Msa0688810 | 0.815628 | 8.386249e-52 | -8.615850e-47 |
| Msa0431560 | Msa0688810 | 0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0433890 | Msa0688810 | 0.809496 | 1.838872e-50 | -8.615850e-47 |
| Msa0434820 | Msa0688810 | 0.800738 | 1.251708e-48 | -8.615850e-47 |
| Msa0450890 | Msa0688810 | 0.809255 | 2.071442e-50 | -8.615850e-47 |
| Msa0469770 | Msa0688810 | 0.802162 | 6.395137e-49 | -8.615850e-47 |
| Msa0476570 | Msa0688810 | 0.811749 | 5.991740e-51 | -8.615850e-47 |
| Msa0478730 | Msa0688810 | 0.804512 | 2.084739e-49 | -8.615850e-47 |
| Msa0246510 | Msa0688810 | 0.801910 | 7.205061e-49 | -8.615850e-47 |
| Msa0259450 | Msa0688810 | 0.803795 | 2.938735e-49 | -8.615850e-47 |
| Msa0259570 | Msa0688810 | 0.802476 | 5.510916e-49 | -8.615850e-47 |
| Msa0266150 | Msa0688810 | 0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0275250 | Msa0688810 | 0.827291 | 1.696736e-54 | -8.615850e-47 |
| Msa0285510 | Msa0688810 | 0.804804 | 1.811627e-49 | -8.615850e-47 |
| Msa0297320 | Msa0688810 | 0.806998 | 6.263730e-50 | -8.615850e-47 |
| Msa0305630 | Msa0688810 | 0.802556 | 5.304049e-49 | -8.615850e-47 |
| Msa0315720 | Msa0688810 | 0.830061 | 3.629305e-55 | -8.615850e-47 |
| Msa0327990 | Msa0688810 | 0.819877 | 9.222774e-53 | -8.615850e-47 |
| Msa0491160 | Msa0688810 | 0.816223 | 6.178980e-52 | -8.615850e-47 |
| Msa0504640 | Msa0688810 | 0.802689 | 4.980209e-49 | -8.615850e-47 |
| Msa0522810 | Msa0688810 | 0.807892 | 4.048884e-50 | -8.615850e-47 |
| Msa0523400 | Msa0688810 | 0.812422 | 4.274806e-51 | -8.615850e-47 |
| Msa0523420 | Msa0688810 | 0.804643 | 1.957524e-49 | -8.615850e-47 |
| Msa0527210 | Msa0688810 | 0.807188 | 5.709201e-50 | -8.615850e-47 |
| Msa0541700 | Msa0688810 | 0.800875 | 1.173592e-48 | -8.615850e-47 |
| Msa0552660 | Msa0688810 | 0.801742 | 7.800560e-49 | -8.615850e-47 |
| Msa0554700 | Msa0688810 | 0.800356 | 1.497761e-48 | -8.615850e-47 |
| Msa0560010 | Msa0688810 | 0.809318 | 2.007567e-50 | -8.615850e-47 |
| Msa0567190 | Msa0688810 | 0.804572 | 2.025244e-49 | -8.615850e-47 |
| Msa0578400 | Msa0688810 | 0.811203 | 7.873174e-51 | -8.615850e-47 |
| Msa0580410 | Msa0688810 | 0.800787 | 1.223571e-48 | -8.615850e-47 |
| Msa0585810 | Msa0688810 | 0.800021 | 1.752003e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688810 | MtrunA17_Chr1g0205941 | 99.065 | 321 | 2 | 1 | 1 | 320 | 1 | 321 | 0.0 | 645 |
| Msa0688810 | MtrunA17_Chr5g0416661 | 69.032 | 310 | 94 | 2 | 1 | 310 | 1 | 308 | 1.20e-151 | 428 |
| Msa0688810 | MtrunA17_Chr7g0231821 | 68.199 | 261 | 81 | 2 | 1 | 261 | 1 | 259 | 1.08e-122 | 352 |
| Msa0688810 | MtrunA17_Chr5g0436571 | 26.899 | 316 | 182 | 6 | 24 | 303 | 21 | 323 | 1.91e-27 | 109 |
| Msa0688810 | MtrunA17_Chr8g0372531 | 23.860 | 285 | 196 | 7 | 25 | 297 | 28 | 303 | 3.50e-19 | 86.3 |
| Msa0688810 | MtrunA17_Chr8g0385571 | 29.097 | 299 | 173 | 13 | 13 | 298 | 229 | 501 | 1.02e-18 | 86.7 |
| Msa0688810 | MtrunA17_Chr1g0163521 | 24.198 | 343 | 185 | 10 | 26 | 302 | 25 | 358 | 1.66e-17 | 82.4 |
| Msa0688810 | MtrunA17_Chr7g0269701 | 25.000 | 304 | 196 | 8 | 8 | 297 | 19 | 304 | 6.56e-14 | 71.2 |
| Msa0688810 | MtrunA17_Chr3g0135801 | 21.895 | 306 | 189 | 12 | 13 | 293 | 36 | 316 | 9.42e-13 | 67.8 |
| Msa0688810 | MtrunA17_Chr7g0252401 | 27.181 | 298 | 177 | 14 | 13 | 298 | 209 | 478 | 1.28e-12 | 68.2 |
| Msa0688810 | MtrunA17_Chr1g0149111 | 23.232 | 297 | 191 | 10 | 7 | 293 | 135 | 404 | 9.73e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0688810 | AT3G05290.1 | 69.903 | 309 | 91 | 2 | 1 | 308 | 1 | 308 | 9.06e-159 | 446 |
| Msa0688810 | AT5G27520.1 | 69.551 | 312 | 91 | 3 | 1 | 310 | 3 | 312 | 1.47e-156 | 441 |
| Msa0688810 | AT2G39970.1 | 24.522 | 314 | 190 | 6 | 26 | 303 | 23 | 325 | 4.91e-26 | 105 |
| Msa0688810 | AT5G66380.1 | 23.411 | 299 | 209 | 6 | 10 | 297 | 9 | 298 | 1.63e-19 | 87.8 |
| Msa0688810 | AT5G07320.1 | 27.178 | 287 | 172 | 13 | 20 | 298 | 218 | 475 | 1.96e-12 | 68.2 |
| Msa0688810 | AT4G32400.1 | 22.667 | 300 | 197 | 8 | 7 | 297 | 110 | 383 | 2.21e-12 | 67.8 |
Find 70 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 4_4:-55078807 | None:intergenic |
| CTACTTTAAGAGACTATATT+TGG | 0.166458 | 4_4:+55077337 | Msa0688810:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 4_4:+55078627 | Msa0688810:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 4_4:-55078806 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 4_4:-55076298 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 4_4:+55077308 | Msa0688810:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 4_4:+55077889 | Msa0688810:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 4_4:+55077993 | Msa0688810:CDS |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 4_4:-55077869 | None:intergenic |
| TCATTGTCTGAAGCTACTTC+TGG | 0.274841 | 4_4:+55076219 | Msa0688810:CDS |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 4_4:+55077260 | Msa0688810:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 4_4:-55078203 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 4_4:-55078003 | None:intergenic |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 4_4:-55077977 | None:intergenic |
| GAAGCTACTTCTGGGGCTAT+TGG | 0.386853 | 4_4:+55076228 | Msa0688810:CDS |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 4_4:+55078267 | Msa0688810:CDS |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 4_4:+55078544 | Msa0688810:intron |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 4_4:-55078278 | None:intergenic |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 4_4:+55078647 | Msa0688810:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 4_4:+55077259 | Msa0688810:CDS |
| CATTGTCTGAAGCTACTTCT+GGG | 0.446171 | 4_4:+55076220 | Msa0688810:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 4_4:+55078761 | Msa0688810:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 4_4:+55077398 | Msa0688810:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 4_4:-55078202 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 4_4:+55078646 | Msa0688810:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 4_4:+55078608 | Msa0688810:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 4_4:+55078145 | Msa0688810:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 4_4:-55077300 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 4_4:+55077949 | Msa0688810:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 4_4:+55078712 | Msa0688810:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 4_4:+55077932 | Msa0688810:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 4_4:-55077935 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 4_4:+55077908 | Msa0688810:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 4_4:+55078146 | Msa0688810:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 4_4:+55077235 | Msa0688810:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 4_4:-55077917 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 4_4:+55078589 | Msa0688810:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 4_4:+55076322 | Msa0688810:CDS |
| ACAAGACGGTGGTGCTAACA+AGG | 0.523486 | 4_4:-55076254 | None:intergenic |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 4_4:-55078186 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 4_4:+55078718 | Msa0688810:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 4_4:-55077295 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 4_4:-55078805 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 4_4:-55078803 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 4_4:-55077868 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 4_4:+55077362 | Msa0688810:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 4_4:-55077884 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 4_4:+55077900 | Msa0688810:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 4_4:+55078184 | Msa0688810:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 4_4:-55077950 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 4_4:-55078277 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 4_4:+55078638 | Msa0688810:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 4_4:+55077261 | Msa0688810:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 4_4:-55078804 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 4_4:+55077869 | Msa0688810:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 4_4:+55077901 | Msa0688810:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 4_4:+55078741 | Msa0688810:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 4_4:+55077254 | Msa0688810:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 4_4:+55077925 | Msa0688810:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 4_4:+55078597 | Msa0688810:CDS |
| CTGTACAATACTAATAACAC+AGG | 0.650569 | 4_4:+55077424 | Msa0688810:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 4_4:-55078201 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 4_4:-55078002 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 4_4:+55077924 | Msa0688810:CDS |
| ATTGTCTGAAGCTACTTCTG+GGG | 0.678769 | 4_4:+55076221 | Msa0688810:CDS |
| AGTATCAAGTGGATACAAGA+CGG | 0.683516 | 4_4:-55076268 | None:intergenic |
| TATTAGTATTGTACAGACGC+CGG | 0.694097 | 4_4:-55077417 | None:intergenic |
| CAAGACGGTGGTGCTAACAA+GGG | 0.715250 | 4_4:-55076253 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 4_4:-55077405 | None:intergenic |
| ATCAAGTGGATACAAGACGG+TGG | 0.749245 | 4_4:-55076265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTCATGAAACAATTT+AGG | + | chr4_4:55076386-55076405 | Msa0688810:intron | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | + | chr4_4:55077140-55077159 | Msa0688810:intron | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | - | chr4_4:55077543-55077562 | None:intergenic | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | - | chr4_4:55077544-55077563 | None:intergenic | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | + | chr4_4:55077552-55077571 | Msa0688810:intron | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | + | chr4_4:55077601-55077620 | Msa0688810:intron | 15.0% |
| !! | AATCTAGAGATAAATAATTT+AGG | - | chr4_4:55078304-55078323 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | - | chr4_4:55078376-55078395 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | + | chr4_4:55078375-55078394 | Msa0688810:intron | 15.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | - | chr4_4:55076368-55076387 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCAAATACAAAC+AGG | - | chr4_4:55076438-55076457 | None:intergenic | 20.0% |
| !! | ATGTAGTTTATGAAAAAAAC+AGG | + | chr4_4:55076765-55076784 | Msa0688810:intron | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | + | chr4_4:55076789-55076808 | Msa0688810:intron | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | - | chr4_4:55077118-55077137 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | + | chr4_4:55077551-55077570 | Msa0688810:intron | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | - | chr4_4:55077980-55077999 | None:intergenic | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | + | chr4_4:55078331-55078350 | Msa0688810:intron | 20.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | - | chr4_4:55076329-55076348 | None:intergenic | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | + | chr4_4:55076340-55076359 | Msa0688810:intron | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | + | chr4_4:55076341-55076360 | Msa0688810:intron | 25.0% |
| !! | AGAAAACCAAATGATAATGT+CGG | + | chr4_4:55076530-55076549 | Msa0688810:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | + | chr4_4:55076564-55076583 | Msa0688810:intron | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | + | chr4_4:55076874-55076893 | Msa0688810:intron | 25.0% |
| !! | ACGAAAACATTTTACAGTTT+AGG | + | chr4_4:55076952-55076971 | Msa0688810:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | - | chr4_4:55076992-55077011 | None:intergenic | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | - | chr4_4:55077090-55077109 | None:intergenic | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | + | chr4_4:55077214-55077233 | Msa0688810:CDS | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | - | chr4_4:55077303-55077322 | None:intergenic | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | + | chr4_4:55077308-55077327 | Msa0688810:CDS | 25.0% |
| !! | CTACTTTAAGAGACTATATT+TGG | + | chr4_4:55077337-55077356 | Msa0688810:CDS | 25.0% |
| ! | AGACTATATTTGGAAAAAAG+TGG | + | chr4_4:55077347-55077366 | Msa0688810:CDS | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | + | chr4_4:55077488-55077507 | Msa0688810:intron | 25.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | + | chr4_4:55077759-55077778 | Msa0688810:intron | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | + | chr4_4:55078056-55078075 | Msa0688810:intron | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | + | chr4_4:55078330-55078349 | Msa0688810:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | - | chr4_4:55078368-55078387 | None:intergenic | 25.0% |
| !!! | TAAATTTTTTCACAGATCTG+TGG | + | chr4_4:55078415-55078434 | Msa0688810:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | + | chr4_4:55078525-55078544 | Msa0688810:intron | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | + | chr4_4:55078638-55078657 | Msa0688810:CDS | 25.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | - | chr4_4:55076282-55076301 | None:intergenic | 30.0% |
| TTGAACTTCAGCTTGATATT+TGG | - | chr4_4:55076301-55076320 | None:intergenic | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | - | chr4_4:55076355-55076374 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | + | chr4_4:55076358-55076377 | Msa0688810:intron | 30.0% | |
| ! | ATTTAGGTTAAGTGTGTGTT+TGG | + | chr4_4:55076402-55076421 | Msa0688810:intron | 30.0% |
| AGAACATCTTGTATTTGGAT+TGG | + | chr4_4:55076569-55076588 | Msa0688810:intron | 30.0% | |
| CTTATCACAATAACTACTCT+AGG | + | chr4_4:55076647-55076666 | Msa0688810:intron | 30.0% | |
| ! | AATGTTTTCGTAAACTATCC+TGG | - | chr4_4:55076943-55076962 | None:intergenic | 30.0% |
| TTATTGTGGCAAGATTAACA+AGG | + | chr4_4:55077154-55077173 | Msa0688810:intron | 30.0% | |
| AATTCTCCTACATAAGATAG+AGG | - | chr4_4:55077201-55077220 | None:intergenic | 30.0% | |
| ! | GGAGAATTTCTGATGTTTTA+TGG | + | chr4_4:55077213-55077232 | Msa0688810:intron | 30.0% |
| AAAAGTGGAAACAAGAACAT+TGG | + | chr4_4:55077362-55077381 | Msa0688810:CDS | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | + | chr4_4:55077424-55077443 | Msa0688810:CDS | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | - | chr4_4:55077588-55077607 | None:intergenic | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | + | chr4_4:55077900-55077919 | Msa0688810:CDS | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | + | chr4_4:55077901-55077920 | Msa0688810:CDS | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | - | chr4_4:55078072-55078091 | None:intergenic | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | - | chr4_4:55078543-55078562 | None:intergenic | 30.0% | |
| AGTATCAAGTGGATACAAGA+CGG | - | chr4_4:55076271-55076290 | None:intergenic | 35.0% | |
| TAGAGACTCCTGTTTGTATT+TGG | + | chr4_4:55076427-55076446 | Msa0688810:intron | 35.0% | |
| CAAACACCGACATTATCATT+TGG | - | chr4_4:55076539-55076558 | None:intergenic | 35.0% | |
| ! | CAAATGATAATGTCGGTGTT+TGG | + | chr4_4:55076537-55076556 | Msa0688810:intron | 35.0% |
| TGACATACATCCGTTTGTAT+TGG | - | chr4_4:55076887-55076906 | None:intergenic | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | + | chr4_4:55076922-55076941 | Msa0688810:intron | 35.0% | |
| GTTGTTCCTCTATCTTATGT+AGG | + | chr4_4:55077192-55077211 | Msa0688810:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | - | chr4_4:55077298-55077317 | None:intergenic | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | - | chr4_4:55077420-55077439 | None:intergenic | 35.0% | |
| TTAATGTCATGTTTGCAGGA+CGG | - | chr4_4:55077584-55077603 | None:intergenic | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | + | chr4_4:55077700-55077719 | Msa0688810:intron | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | - | chr4_4:55077809-55077828 | None:intergenic | 35.0% | |
| !! | CTCATTATTTCCTTGCTGTT+AGG | + | chr4_4:55077811-55077830 | Msa0688810:intron | 35.0% |
| AACAACAAACCCATCTATTC+AGG | + | chr4_4:55077993-55078012 | Msa0688810:CDS | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | - | chr4_4:55078005-55078024 | None:intergenic | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | - | chr4_4:55078006-55078025 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | + | chr4_4:55078146-55078165 | Msa0688810:CDS | 35.0% | |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | + | chr4_4:55078217-55078236 | Msa0688810:CDS | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | + | chr4_4:55078218-55078237 | Msa0688810:CDS | 35.0% |
| AAACATCTTTCATCAGCATG+TGG | - | chr4_4:55078513-55078532 | None:intergenic | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | + | chr4_4:55078544-55078563 | Msa0688810:intron | 35.0% | |
| ATCCATTGAAAAATCCCAAG+AGG | - | chr4_4:55078664-55078683 | None:intergenic | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | + | chr4_4:55078718-55078737 | Msa0688810:CDS | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | - | chr4_4:55078807-55078826 | None:intergenic | 35.0% | |
| ! | TCATTGTCTGAAGCTACTTC+TGG | + | chr4_4:55076219-55076238 | Msa0688810:CDS | 40.0% |
| ! | CATTGTCTGAAGCTACTTCT+GGG | + | chr4_4:55076220-55076239 | Msa0688810:CDS | 40.0% |
| ! | ATTGTCTGAAGCTACTTCTG+GGG | + | chr4_4:55076221-55076240 | Msa0688810:CDS | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | - | chr4_4:55076325-55076344 | None:intergenic | 40.0% |
| CCAGCCATCAAAGAAAATAC+AGG | + | chr4_4:55076322-55076341 | Msa0688810:CDS | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | + | chr4_4:55077235-55077254 | Msa0688810:CDS | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | + | chr4_4:55077260-55077279 | Msa0688810:CDS | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | + | chr4_4:55077261-55077280 | Msa0688810:CDS | 40.0% | |
| ACTCGATCTTTAGCAGAACT+AGG | + | chr4_4:55077646-55077665 | Msa0688810:intron | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | - | chr4_4:55077705-55077724 | None:intergenic | 40.0% |
| AGATTATGCACCTAACAGCA+AGG | - | chr4_4:55077824-55077843 | None:intergenic | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | - | chr4_4:55077871-55077890 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | + | chr4_4:55077889-55077908 | Msa0688810:CDS | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | - | chr4_4:55078124-55078143 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | + | chr4_4:55078145-55078164 | Msa0688810:CDS | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | - | chr4_4:55078205-55078224 | None:intergenic | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | - | chr4_4:55078206-55078225 | None:intergenic | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | - | chr4_4:55078280-55078299 | None:intergenic | 40.0% | |
| ! | TTGATAATCCACCTGATAGC+TGG | - | chr4_4:55078281-55078300 | None:intergenic | 40.0% |
| TGGTTTCTGCAGATGTATCT+TGG | + | chr4_4:55078435-55078454 | Msa0688810:intron | 40.0% | |
| GGTTTCTGCAGATGTATCTT+GGG | + | chr4_4:55078436-55078455 | Msa0688810:intron | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | + | chr4_4:55078589-55078608 | Msa0688810:CDS | 40.0% | |
| ! | CTGGAGCACTCTATACTATT+TGG | + | chr4_4:55078627-55078646 | Msa0688810:CDS | 40.0% |
| !!! | GGGATTTTTCAATGGATTGC+AGG | + | chr4_4:55078667-55078686 | Msa0688810:CDS | 40.0% |
| AGAAGATCACAAAGTCGACA+TGG | + | chr4_4:55078741-55078760 | Msa0688810:CDS | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | + | chr4_4:55078761-55078780 | Msa0688810:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | - | chr4_4:55078806-55078825 | None:intergenic | 40.0% | |
| ATCAAGTGGATACAAGACGG+TGG | - | chr4_4:55076268-55076287 | None:intergenic | 45.0% | |
| CAGGTGCTTTCATTGTACCA+AGG | + | chr4_4:55077254-55077273 | Msa0688810:CDS | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | + | chr4_4:55077259-55077278 | Msa0688810:CDS | 45.0% | |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | - | chr4_4:55077274-55077293 | None:intergenic | 45.0% |
| TTGATTGCCGCTACTATGTC+CGG | + | chr4_4:55077398-55077417 | Msa0688810:CDS | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | - | chr4_4:55077872-55077891 | None:intergenic | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | + | chr4_4:55077869-55077888 | Msa0688810:CDS | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | - | chr4_4:55077887-55077906 | None:intergenic | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | + | chr4_4:55077908-55077927 | Msa0688810:CDS | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | + | chr4_4:55077949-55077968 | Msa0688810:CDS | 45.0% | |
| ACCATCAAATGCATCACTCC+AGG | - | chr4_4:55077953-55077972 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | - | chr4_4:55078121-55078140 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | - | chr4_4:55078204-55078223 | None:intergenic | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | + | chr4_4:55078646-55078665 | Msa0688810:CDS | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | + | chr4_4:55078647-55078666 | Msa0688810:CDS | 45.0% | |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | + | chr4_4:55078659-55078678 | Msa0688810:CDS | 45.0% |
| CAGCTCTGCATTACTTCTGA+TGG | + | chr4_4:55078712-55078731 | Msa0688810:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | - | chr4_4:55078801-55078820 | None:intergenic | 45.0% | |
| !! | GAAGCTACTTCTGGGGCTAT+TGG | + | chr4_4:55076228-55076247 | Msa0688810:CDS | 50.0% |
| ! | CAAGACGGTGGTGCTAACAA+GGG | - | chr4_4:55076256-55076275 | None:intergenic | 50.0% |
| ! | ACAAGACGGTGGTGCTAACA+AGG | - | chr4_4:55076257-55076276 | None:intergenic | 50.0% |
| CATCAGCGCAGCATGTGTTT+GGG | + | chr4_4:55076592-55076611 | Msa0688810:intron | 50.0% | |
| CATTTGGCATCGTGTGCGTT+TGG | - | chr4_4:55077074-55077093 | None:intergenic | 50.0% | |
| CAAACGCACACGATGCCAAA+TGG | + | chr4_4:55077072-55077091 | Msa0688810:intron | 50.0% | |
| ACTCTGGCAGACCTTATCAG+AGG | + | chr4_4:55077924-55077943 | Msa0688810:CDS | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | + | chr4_4:55077925-55077944 | Msa0688810:CDS | 50.0% | |
| !! | AGACCTTATCAGAGGGTACC+TGG | + | chr4_4:55077932-55077951 | Msa0688810:CDS | 50.0% |
| ACTCCAGGTACCCTCTGATA+AGG | - | chr4_4:55077938-55077957 | None:intergenic | 50.0% | |
| AACCGATGCAAAGTCATCCC+CGG | + | chr4_4:55078184-55078203 | Msa0688810:CDS | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | - | chr4_4:55078189-55078208 | None:intergenic | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | + | chr4_4:55078267-55078286 | Msa0688810:CDS | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | + | chr4_4:55078270-55078289 | Msa0688810:intron | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | + | chr4_4:55078597-55078616 | Msa0688810:CDS | 50.0% |
| GCATCAGCGCAGCATGTGTT+TGG | + | chr4_4:55076591-55076610 | Msa0688810:intron | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | - | chr4_4:55077408-55077427 | None:intergenic | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | - | chr4_4:55077920-55077939 | None:intergenic | 55.0% | |
| AAGGCGCAGAGGACAATCTC+TGG | + | chr4_4:55078608-55078627 | Msa0688810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 55076201 | 55078826 | 55076201 | ID=Msa0688810;Name=Msa0688810 |
| chr4_4 | mRNA | 55076201 | 55078826 | 55076201 | ID=Msa0688810-mRNA-1;Parent=Msa0688810;Name=Msa0688810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|320 |
| chr4_4 | exon | 55076201 | 55076343 | 55076201 | ID=Msa0688810-mRNA-1:exon:14519;Parent=Msa0688810-mRNA-1 |
| chr4_4 | exon | 55077214 | 55077445 | 55077214 | ID=Msa0688810-mRNA-1:exon:14520;Parent=Msa0688810-mRNA-1 |
| chr4_4 | exon | 55077868 | 55078014 | 55077868 | ID=Msa0688810-mRNA-1:exon:14521;Parent=Msa0688810-mRNA-1 |
| chr4_4 | exon | 55078128 | 55078288 | 55078128 | ID=Msa0688810-mRNA-1:exon:14522;Parent=Msa0688810-mRNA-1 |
| chr4_4 | exon | 55078547 | 55078826 | 55078547 | ID=Msa0688810-mRNA-1:exon:14523;Parent=Msa0688810-mRNA-1 |
| chr4_4 | CDS | 55076201 | 55076343 | 55076201 | ID=Msa0688810-mRNA-1:cds;Parent=Msa0688810-mRNA-1 |
| chr4_4 | CDS | 55077214 | 55077445 | 55077214 | ID=Msa0688810-mRNA-1:cds;Parent=Msa0688810-mRNA-1 |
| chr4_4 | CDS | 55077868 | 55078014 | 55077868 | ID=Msa0688810-mRNA-1:cds;Parent=Msa0688810-mRNA-1 |
| chr4_4 | CDS | 55078128 | 55078288 | 55078128 | ID=Msa0688810-mRNA-1:cds;Parent=Msa0688810-mRNA-1 |
| chr4_4 | CDS | 55078547 | 55078826 | 55078547 | ID=Msa0688810-mRNA-1:cds;Parent=Msa0688810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
