Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179990 | sp|Q84MC0|UGPI4_ARATH | 58.101 | 179 | 71 | 2 | 25 | 199 | 21 | 199 | 1.35e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179990 | A0A072VQ56 | 93.467 | 199 | 13 | 0 | 1 | 199 | 1 | 199 | 1.65e-132 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0179990 | Msa0184680 | 0.823766 | 1.160836e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179990 | MtrunA17_Chr1g0205951 | 93.467 | 199 | 13 | 0 | 1 | 199 | 1 | 199 | 3.18e-136 | 379 |
| Msa0179990 | MtrunA17_Chr5g0394151 | 63.415 | 205 | 65 | 2 | 1 | 199 | 1 | 201 | 2.14e-95 | 276 |
| Msa0179990 | MtrunA17_Chr1g0191761 | 36.306 | 157 | 97 | 3 | 20 | 173 | 26 | 182 | 2.78e-31 | 113 |
| Msa0179990 | MtrunA17_Chr7g0272941 | 38.194 | 144 | 85 | 3 | 19 | 159 | 17 | 159 | 1.13e-30 | 111 |
| Msa0179990 | MtrunA17_Chr1g0191781 | 32.121 | 165 | 106 | 3 | 11 | 169 | 6 | 170 | 4.97e-27 | 102 |
| Msa0179990 | MtrunA17_Chr1g0191771 | 33.582 | 134 | 88 | 1 | 31 | 163 | 46 | 179 | 1.38e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179990 | AT3G06035.1 | 58.101 | 179 | 71 | 2 | 25 | 199 | 21 | 199 | 1.37e-71 | 216 |
| Msa0179990 | AT5G19250.1 | 60.479 | 167 | 64 | 1 | 24 | 188 | 19 | 185 | 6.98e-68 | 206 |
| Msa0179990 | AT1G54860.1 | 43.353 | 173 | 80 | 4 | 5 | 168 | 6 | 169 | 1.67e-47 | 154 |
| Msa0179990 | AT5G19240.1 | 44.767 | 172 | 89 | 3 | 23 | 192 | 20 | 187 | 7.88e-46 | 150 |
| Msa0179990 | AT5G19230.2 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 1.87e-41 | 139 |
| Msa0179990 | AT5G19230.1 | 45.562 | 169 | 80 | 3 | 1 | 169 | 1 | 157 | 1.87e-41 | 139 |
Find 43 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTGGCATTTAGCTAAA+AGG | 0.201639 | 1_4:+67760956 | None:intergenic |
| CCAAGTTCTCTCTATTCTTC+TGG | 0.209568 | 1_4:-67761778 | Msa0179990:CDS |
| GTTATGCCTGCCTGTGTTCC+TGG | 0.264326 | 1_4:-67760907 | Msa0179990:CDS |
| TCCAACTTTGGAAATCAAAT+TGG | 0.265283 | 1_4:+67760714 | None:intergenic |
| TGAGAGAGATAATCTTTATC+AGG | 0.299934 | 1_4:-67761148 | Msa0179990:CDS |
| AGCTAAAAGGTTTGGGTAGT+TGG | 0.318984 | 1_4:+67760969 | None:intergenic |
| TGGCATTTAGCTAAAAGGTT+TGG | 0.327003 | 1_4:+67760961 | None:intergenic |
| GTATTGGCTCAGAAGATAAC+TGG | 0.333128 | 1_4:-67760801 | Msa0179990:CDS |
| CCAGAAGAATAGAGAGAACT+TGG | 0.347419 | 1_4:+67761778 | None:intergenic |
| GGCATTTAGCTAAAAGGTTT+GGG | 0.356285 | 1_4:+67760962 | None:intergenic |
| GCAATAAATCATTCCAACTT+TGG | 0.358521 | 1_4:+67760702 | None:intergenic |
| TACATGGTTGATTCTTGAAT+TGG | 0.360348 | 1_4:+67761040 | None:intergenic |
| ATTGGCAGCATTAGAACTAT+AGG | 0.374058 | 1_4:+67760732 | None:intergenic |
| GCCAATTTGATTTCCAAAGT+TGG | 0.375408 | 1_4:-67760715 | Msa0179990:CDS |
| TTGGCAGCATTAGAACTATA+GGG | 0.380106 | 1_4:+67760733 | None:intergenic |
| CATCCTCTAGGTATCATAAC+AGG | 0.398840 | 1_4:+67760650 | None:intergenic |
| TCACCGTCATCACATTTAAC+TGG | 0.400596 | 1_4:+67761716 | None:intergenic |
| GACACACAGTATACAGGAAT+TGG | 0.421140 | 1_4:-67760823 | Msa0179990:CDS |
| TGCTCAATTCTCTTGTTAGC+TGG | 0.427277 | 1_4:-67760682 | Msa0179990:CDS |
| CTCAACGACACACAGTATAC+AGG | 0.481619 | 1_4:-67760829 | Msa0179990:CDS |
| TTGACCACTGACACTCCAAC+AGG | 0.483770 | 1_4:-67760766 | Msa0179990:CDS |
| TTTGGGTAGTTGGAGAATTG+AGG | 0.485525 | 1_4:+67760979 | None:intergenic |
| ATTGGCTATTTCTGATACAA+AGG | 0.496882 | 1_4:-67760938 | Msa0179990:CDS |
| ACGAGGCTTGAAGCTAGGCC+AGG | 0.504069 | 1_4:+67760889 | None:intergenic |
| TGAAGCTAGGCCAGGAACAC+AGG | 0.509872 | 1_4:+67760897 | None:intergenic |
| GCTAGGCCAGGAACACAGGC+AGG | 0.513127 | 1_4:+67760901 | None:intergenic |
| GAGAATTGAGGTTCAGTACC+TGG | 0.522201 | 1_4:+67760991 | None:intergenic |
| GCTATTTCTGATACAAAGGA+TGG | 0.531181 | 1_4:-67760934 | Msa0179990:CDS |
| CAGTATACAGGAATTGGTAT+TGG | 0.536270 | 1_4:-67760817 | Msa0179990:CDS |
| GCACCTGTGGTATTTGTACA+TGG | 0.542966 | 1_4:+67761024 | None:intergenic |
| TTGTATCAGAAATAGCCAAT+TGG | 0.558276 | 1_4:+67760941 | None:intergenic |
| TCGTGAAGTTAGTGAGGACG+AGG | 0.562843 | 1_4:+67760872 | None:intergenic |
| TGAGGACGAGGCTTGAAGCT+AGG | 0.566605 | 1_4:+67760884 | None:intergenic |
| GTTTCCTGTTGGAGTGTCAG+TGG | 0.576612 | 1_4:+67760762 | None:intergenic |
| GAGATTTCGTGAAGTTAGTG+AGG | 0.582648 | 1_4:+67760866 | None:intergenic |
| GAGAGAGATAATCTTTATCA+GGG | 0.592178 | 1_4:-67761147 | Msa0179990:CDS |
| TATCCAGTTAAATGTGATGA+CGG | 0.600716 | 1_4:-67761719 | Msa0179990:intron |
| TGGTACTGTATTAGCACCTG+TGG | 0.607702 | 1_4:+67761011 | None:intergenic |
| TGGCAGCATTAGAACTATAG+GGG | 0.612217 | 1_4:+67760734 | None:intergenic |
| ACAGGTGCTAATACAGTACC+AGG | 0.621692 | 1_4:-67761009 | Msa0179990:CDS |
| CAGAAGAATAGAGAGAACTT+GGG | 0.624874 | 1_4:+67761779 | None:intergenic |
| CAACCATGTACAAATACCAC+AGG | 0.631778 | 1_4:-67761027 | Msa0179990:CDS |
| GGCAGCATTAGAACTATAGG+GGG | 0.666389 | 1_4:+67760735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGACCAATTCAAAATA+TGG | + | chr1_4:67760816-67760835 | None:intergenic | 20.0% |
| !!! | ATTTTGACCAATTCAAAATA+TGG | + | chr1_4:67760816-67760835 | None:intergenic | 20.0% |
| !!! | TCTTAGACCATATTTTGAAT+TGG | - | chr1_4:67760806-67760825 | Msa0179990:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_4:67760881-67760900 | Msa0179990:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_4:67760881-67760900 | Msa0179990:CDS | 25.0% |
| !!! | TCTTAGACCATATTTTGAAT+TGG | - | chr1_4:67760806-67760825 | Msa0179990:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_4:67760881-67760900 | Msa0179990:CDS | 25.0% |
| ! | ATTCATGAGATTAATGTCAT+TGG | - | chr1_4:67760881-67760900 | Msa0179990:CDS | 25.0% |
| TATCCAGTTAAATGTGATGA+CGG | - | chr1_4:67760732-67760751 | Msa0179990:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr1_4:67761175-67761194 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr1_4:67761241-67761260 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr1_4:67761281-67761300 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr1_4:67761303-67761322 | Msa0179990:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr1_4:67761304-67761323 | Msa0179990:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr1_4:67761414-67761433 | None:intergenic | 30.0% |
| TTGTATCAGAAATAGCCAAT+TGG | + | chr1_4:67761513-67761532 | None:intergenic | 30.0% | |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr1_4:67761513-67761532 | Msa0179990:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr1_4:67761740-67761759 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr1_4:67761752-67761771 | None:intergenic | 30.0% | |
| TATCCAGTTAAATGTGATGA+CGG | - | chr1_4:67760732-67760751 | Msa0179990:CDS | 30.0% | |
| TGTCAGTGAACAAAATGATT+TGG | + | chr1_4:67761175-67761194 | None:intergenic | 30.0% | |
| TTTCAGCTTCATTGTGTATA+TGG | + | chr1_4:67761241-67761260 | None:intergenic | 30.0% | |
| TGCAGAAAAAACATTGAACA+GGG | + | chr1_4:67761281-67761300 | None:intergenic | 30.0% | |
| TGAGAGAGATAATCTTTATC+AGG | - | chr1_4:67761303-67761322 | Msa0179990:intron | 30.0% | |
| GAGAGAGATAATCTTTATCA+GGG | - | chr1_4:67761304-67761323 | Msa0179990:intron | 30.0% | |
| ! | TACATGGTTGATTCTTGAAT+TGG | + | chr1_4:67761414-67761433 | None:intergenic | 30.0% |
| TTGTATCAGAAATAGCCAAT+TGG | + | chr1_4:67761513-67761532 | None:intergenic | 30.0% | |
| !! | ATTGGCTATTTCTGATACAA+AGG | - | chr1_4:67761513-67761532 | Msa0179990:intron | 30.0% |
| ! | TCCAACTTTGGAAATCAAAT+TGG | + | chr1_4:67761740-67761759 | None:intergenic | 30.0% |
| GCAATAAATCATTCCAACTT+TGG | + | chr1_4:67761752-67761771 | None:intergenic | 30.0% | |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr1_4:67760675-67760694 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr1_4:67760954-67760973 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr1_4:67761074-67761093 | Msa0179990:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr1_4:67761080-67761099 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr1_4:67761282-67761301 | None:intergenic | 35.0% | |
| GGCATTTAGCTAAAAGGTTT+GGG | + | chr1_4:67761492-67761511 | None:intergenic | 35.0% | |
| TGGCATTTAGCTAAAAGGTT+TGG | + | chr1_4:67761493-67761512 | None:intergenic | 35.0% | |
| CCAATTGGCATTTAGCTAAA+AGG | + | chr1_4:67761498-67761517 | None:intergenic | 35.0% | |
| !! | CCTTTTAGCTAAATGCCAAT+TGG | - | chr1_4:67761495-67761514 | Msa0179990:intron | 35.0% |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr1_4:67761517-67761536 | Msa0179990:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr1_4:67761634-67761653 | Msa0179990:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr1_4:67761721-67761740 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr1_4:67761722-67761741 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr1_4:67761736-67761755 | Msa0179990:CDS | 35.0% |
| CAGAAGAATAGAGAGAACTT+GGG | + | chr1_4:67760675-67760694 | None:intergenic | 35.0% | |
| CTAAGCTTGAAATGAGTCAT+GGG | + | chr1_4:67760954-67760973 | None:intergenic | 35.0% | |
| ATGCCTCTTAAAACATTCAC+TGG | - | chr1_4:67761074-67761093 | Msa0179990:CDS | 35.0% | |
| !! | TGTCCAGTGAATGTTTTAAG+AGG | + | chr1_4:67761080-67761099 | None:intergenic | 35.0% |
| CTGCAGAAAAAACATTGAAC+AGG | + | chr1_4:67761282-67761301 | None:intergenic | 35.0% | |
| GGCATTTAGCTAAAAGGTTT+GGG | + | chr1_4:67761492-67761511 | None:intergenic | 35.0% | |
| TGGCATTTAGCTAAAAGGTT+TGG | + | chr1_4:67761493-67761512 | None:intergenic | 35.0% | |
| CCAATTGGCATTTAGCTAAA+AGG | + | chr1_4:67761498-67761517 | None:intergenic | 35.0% | |
| !! | CCTTTTAGCTAAATGCCAAT+TGG | - | chr1_4:67761495-67761514 | Msa0179990:intron | 35.0% |
| !! | GCTATTTCTGATACAAAGGA+TGG | - | chr1_4:67761517-67761536 | Msa0179990:intron | 35.0% |
| CAGTATACAGGAATTGGTAT+TGG | - | chr1_4:67761634-67761653 | Msa0179990:intron | 35.0% | |
| TTGGCAGCATTAGAACTATA+GGG | + | chr1_4:67761721-67761740 | None:intergenic | 35.0% | |
| ATTGGCAGCATTAGAACTAT+AGG | + | chr1_4:67761722-67761741 | None:intergenic | 35.0% | |
| ! | GCCAATTTGATTTCCAAAGT+TGG | - | chr1_4:67761736-67761755 | Msa0179990:CDS | 35.0% |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr1_4:67760676-67760695 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr1_4:67760673-67760692 | Msa0179990:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr1_4:67760738-67760757 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr1_4:67760955-67760974 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr1_4:67761105-67761124 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr1_4:67761196-67761215 | Msa0179990:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr1_4:67761264-67761283 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr1_4:67761393-67761412 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr1_4:67761424-67761443 | Msa0179990:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr1_4:67761475-67761494 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | + | chr1_4:67761485-67761504 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr1_4:67761588-67761607 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr1_4:67761628-67761647 | Msa0179990:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr1_4:67761650-67761669 | Msa0179990:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr1_4:67761720-67761739 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr1_4:67761769-67761788 | Msa0179990:CDS | 40.0% | |
| CCAGAAGAATAGAGAGAACT+TGG | + | chr1_4:67760676-67760695 | None:intergenic | 40.0% | |
| CCAAGTTCTCTCTATTCTTC+TGG | - | chr1_4:67760673-67760692 | Msa0179990:CDS | 40.0% | |
| TCACCGTCATCACATTTAAC+TGG | + | chr1_4:67760738-67760757 | None:intergenic | 40.0% | |
| GCTAAGCTTGAAATGAGTCA+TGG | + | chr1_4:67760955-67760974 | None:intergenic | 40.0% | |
| TTGAGTAATGCACAGATGAC+AGG | + | chr1_4:67761105-67761124 | None:intergenic | 40.0% | |
| ! | TCTCAGTTGTGACCTTTTTC+TGG | - | chr1_4:67761196-67761215 | Msa0179990:intron | 40.0% |
| ACAGGGTAAGTGTAGTGTAA+TGG | + | chr1_4:67761264-67761283 | None:intergenic | 40.0% | |
| !! | GGTCAGCTATTTTATCAGCA+AGG | + | chr1_4:67761393-67761412 | None:intergenic | 40.0% |
| CAACCATGTACAAATACCAC+AGG | - | chr1_4:67761424-67761443 | Msa0179990:intron | 40.0% | |
| TTTGGGTAGTTGGAGAATTG+AGG | + | chr1_4:67761475-67761494 | None:intergenic | 40.0% | |
| AGCTAAAAGGTTTGGGTAGT+TGG | + | chr1_4:67761485-67761504 | None:intergenic | 40.0% | |
| GAGATTTCGTGAAGTTAGTG+AGG | + | chr1_4:67761588-67761607 | None:intergenic | 40.0% | |
| GACACACAGTATACAGGAAT+TGG | - | chr1_4:67761628-67761647 | Msa0179990:intron | 40.0% | |
| !! | GTATTGGCTCAGAAGATAAC+TGG | - | chr1_4:67761650-67761669 | Msa0179990:intron | 40.0% |
| TGGCAGCATTAGAACTATAG+GGG | + | chr1_4:67761720-67761739 | None:intergenic | 40.0% | |
| TGCTCAATTCTCTTGTTAGC+TGG | - | chr1_4:67761769-67761788 | Msa0179990:CDS | 40.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr1_4:67761211-67761230 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr1_4:67761430-67761449 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr1_4:67761443-67761462 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr1_4:67761442-67761461 | Msa0179990:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr1_4:67761463-67761482 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr1_4:67761622-67761641 | Msa0179990:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr1_4:67761719-67761738 | None:intergenic | 45.0% | |
| TGTGCATGTGTGCCAGAAAA+AGG | + | chr1_4:67761211-67761230 | None:intergenic | 45.0% | |
| GCACCTGTGGTATTTGTACA+TGG | + | chr1_4:67761430-67761449 | None:intergenic | 45.0% | |
| TGGTACTGTATTAGCACCTG+TGG | + | chr1_4:67761443-67761462 | None:intergenic | 45.0% | |
| ACAGGTGCTAATACAGTACC+AGG | - | chr1_4:67761442-67761461 | Msa0179990:intron | 45.0% | |
| GAGAATTGAGGTTCAGTACC+TGG | + | chr1_4:67761463-67761482 | None:intergenic | 45.0% | |
| CTCAACGACACACAGTATAC+AGG | - | chr1_4:67761622-67761641 | Msa0179990:intron | 45.0% | |
| GGCAGCATTAGAACTATAGG+GGG | + | chr1_4:67761719-67761738 | None:intergenic | 45.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr1_4:67761028-67761047 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr1_4:67761029-67761048 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr1_4:67761582-67761601 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr1_4:67761685-67761704 | Msa0179990:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr1_4:67761692-67761711 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr1_4:67761703-67761722 | None:intergenic | 50.0% | |
| TCATCGCAGTCGCGAGATTA+GGG | + | chr1_4:67761028-67761047 | None:intergenic | 50.0% | |
| TTCATCGCAGTCGCGAGATT+AGG | + | chr1_4:67761029-67761048 | None:intergenic | 50.0% | |
| TCGTGAAGTTAGTGAGGACG+AGG | + | chr1_4:67761582-67761601 | None:intergenic | 50.0% | |
| TTGACCACTGACACTCCAAC+AGG | - | chr1_4:67761685-67761704 | Msa0179990:intron | 50.0% | |
| ! | GTTTCCTGTTGGAGTGTCAG+TGG | + | chr1_4:67761692-67761711 | None:intergenic | 50.0% |
| TAGGGGGCAAAGTTTCCTGT+TGG | + | chr1_4:67761703-67761722 | None:intergenic | 50.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr1_4:67761544-67761563 | Msa0179990:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr1_4:67761557-67761576 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr1_4:67761570-67761589 | None:intergenic | 55.0% | |
| GTTATGCCTGCCTGTGTTCC+TGG | - | chr1_4:67761544-67761563 | Msa0179990:intron | 55.0% | |
| TGAAGCTAGGCCAGGAACAC+AGG | + | chr1_4:67761557-67761576 | None:intergenic | 55.0% | |
| TGAGGACGAGGCTTGAAGCT+AGG | + | chr1_4:67761570-67761589 | None:intergenic | 55.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr1_4:67761565-67761584 | None:intergenic | 60.0% | |
| ACGAGGCTTGAAGCTAGGCC+AGG | + | chr1_4:67761565-67761584 | None:intergenic | 60.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr1_4:67761553-67761572 | None:intergenic | 65.0% | |
| GCTAGGCCAGGAACACAGGC+AGG | + | chr1_4:67761553-67761572 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67760663 | 67761810 | 67760663 | ID=Msa0179990;Name=Msa0179990 |
| chr1_4 | mRNA | 67760663 | 67761810 | 67760663 | ID=Msa0179990-mRNA-1;Parent=Msa0179990;Name=Msa0179990-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|199 |
| chr1_4 | exon | 67761720 | 67761810 | 67761720 | ID=Msa0179990-mRNA-1:exon:22323;Parent=Msa0179990-mRNA-1 |
| chr1_4 | exon | 67760663 | 67761171 | 67760663 | ID=Msa0179990-mRNA-1:exon:22322;Parent=Msa0179990-mRNA-1 |
| chr1_4 | CDS | 67761720 | 67761810 | 67761720 | ID=Msa0179990-mRNA-1:cds;Parent=Msa0179990-mRNA-1 |
| chr1_4 | CDS | 67760663 | 67761171 | 67760663 | ID=Msa0179990-mRNA-1:cds;Parent=Msa0179990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
